Psyllid ID: psy15273

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
MKNNVTLRGTFVNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLARNNEFASTDDETY
ccccEEEccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEccEEEEEEccccccccccccccccccEEEEccccEEEEEEEEcccccccEEEEEEEEEEEEEEcccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHcccEEcccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHccccccccccccc
ccccccEEEEEEEcccccEEcccccccccccccHHHHHcccEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEccccEEEEEEEEEccccccEEEEEccccEEEEccccccEEEEcccccccccEEEEccccHHHEEEEEEHHHHHHHHHHHHHcccEEccHHHHHHccHHHHHHHHHccccccHHHHHHccEEccccccHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHcHcccEEEEEEcccccccccEEEHHHcEEEccccccHHHHHHHHHHHHHHHccccccHcEccccccccccccccc
mknnvtlrgtFVNKLSYKLISFHigvncspvpskvdsftgaqqvvcgQNCTFVLQVNgsvlscgegsygrlgqghsddlhtPSIISALLGFIIIKVAtscgsdghslglaesgevfswgdgdfgklghgnsdrqrrPRQIEALQGQHAVDVHYRLHEMDTAVACIREGMARIIPVpllslmtsshleqlvcgephiSLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVsgrsrlpanLADLSQRFQVMKVdrcidglptaqtcffqlrlpnysskEVMAEKLRYAINncksidmdnYMLARnnefastddety
mknnvtlrgTFVNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLARNnefastddety
MKNNVTLRGTFVNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLARNNEFASTDDETY
*****TLRGTFVNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGK*****************LQGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLA*************
**NNVTLRGTFVNKLSYKLI*********PVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLA*************
MKNNVTLRGTFVNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLARNNEF********
**NNVTLRGTFVNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLA*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKNNVTLRGTFVNKLSYKLISFHIGVNCSPVPSKVDSFTGAQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIISALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQHAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLARNNEFASTDDETY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query324 2.2.26 [Sep-21-2011]
Q157514861 Probable E3 ubiquitin-pro yes N/A 0.533 0.035 0.689 3e-70
Q4U2R14836 E3 ubiquitin-protein liga no N/A 0.524 0.035 0.514 1e-45
O957144834 E3 ubiquitin-protein liga no N/A 0.487 0.032 0.524 6e-45
Q9VR914912 Probable E3 ubiquitin-pro yes N/A 0.527 0.034 0.451 5e-42
Q3U487861 E3 ubiquitin-protein liga no N/A 0.459 0.173 0.379 1e-27
Q5T447861 E3 ubiquitin-protein liga no N/A 0.459 0.173 0.379 2e-27
P51593322 E3 ubiquitin-protein liga no N/A 0.429 0.431 0.393 7e-22
Q7Z6Z74374 E3 ubiquitin-protein liga no N/A 0.429 0.031 0.393 8e-22
Q7TMY84377 E3 ubiquitin-protein liga no N/A 0.429 0.031 0.393 9e-22
C6KTB710287 Putative E3 ubiquitin-pro yes N/A 0.472 0.014 0.358 8e-20
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  265 bits (678), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 120/174 (68%), Positives = 144/174 (82%)

Query: 151  VHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDL 210
            + YRLHEMD  VA +REGM+ I+PVPLLSL+T+  LEQ+VCG P IS+ +LK++VRYR++
Sbjct: 4688 IEYRLHEMDRQVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPEISVEVLKKVVRYREV 4747

Query: 211  DENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPT 270
            DE H LV+W W  L+ FS+ ERVLFMRFVSGRSRLPAN AD+SQRFQ+MKVDR  D LPT
Sbjct: 4748 DEQHQLVQWFWHTLEEFSNEERVLFMRFVSGRSRLPANTADISQRFQIMKVDRPYDSLPT 4807

Query: 271  AQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLARNNEFASTDDETY 324
            +QTCFFQLRLP YSS+ VMAE+LRYAINNC+SIDMDNYML+RN + A   D  Y
Sbjct: 4808 SQTCFFQLRLPPYSSQLVMAERLRYAINNCRSIDMDNYMLSRNVDNAEGSDTDY 4861
Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q3U487|HECD3_MOUSE E3 ubiquitin-protein ligase HECTD3 OS=Mus musculus GN=Hectd3 PE=1 SV=2 Back     alignment and function description
>sp|Q5T447|HECD3_HUMAN E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1 Back     alignment and function description
>sp|P51593|HUWE1_RAT E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus GN=Huwe1 PE=1 SV=2 Back     alignment and function description
>sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3 Back     alignment and function description
>sp|Q7TMY8|HUWE1_MOUSE E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=5 Back     alignment and function description
>sp|C6KTB7|ALTH1_PLAF7 Putative E3 ubiquitin-protein ligase protein PFF1365c OS=Plasmodium falciparum (isolate 3D7) GN=PFF1365c PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
270002031 4191 hypothetical protein TcasGA2_TC000971 [T 0.530 0.041 0.729 2e-72
390358768 4631 PREDICTED: probable E3 ubiquitin-protein 0.509 0.035 0.692 6e-69
327286813 4963 PREDICTED: LOW QUALITY PROTEIN: probable 0.530 0.034 0.689 7e-69
344293366 4858 PREDICTED: probable E3 ubiquitin-protein 0.533 0.035 0.689 7e-69
301610125 4842 PREDICTED: probable E3 ubiquitin-protein 0.533 0.035 0.695 1e-68
431895932 4850 Putative E3 ubiquitin-protein ligase HER 0.533 0.035 0.695 1e-68
125821491 4846 PREDICTED: probable E3 ubiquitin-protein 0.533 0.035 0.689 1e-68
426379401 4502 PREDICTED: probable E3 ubiquitin-protein 0.533 0.038 0.689 1e-68
395502621 4865 PREDICTED: probable E3 ubiquitin-protein 0.533 0.035 0.689 2e-68
334314433 4790 PREDICTED: probable E3 ubiquitin-protein 0.533 0.036 0.689 2e-68
>gi|270002031|gb|EEZ98478.1| hypothetical protein TcasGA2_TC000971 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 148/174 (85%)

Query: 151  VHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDL 210
            V +RL E D  +  IREGMA I+PVPLLSLMT+ +LEQLVCG  HIS+ +LK+I+RYR+L
Sbjct: 4017 VKFRLEEFDLQITSIREGMAGIVPVPLLSLMTADYLEQLVCGMTHISIPILKKIIRYREL 4076

Query: 211  DENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPT 270
            DENH LVRW+W +L+ FS  ERVLFMRFVSGRSRLPANLADLSQRFQVMKVD+ ++GLPT
Sbjct: 4077 DENHNLVRWLWNILEGFSDAERVLFMRFVSGRSRLPANLADLSQRFQVMKVDKAVNGLPT 4136

Query: 271  AQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLARNNEFASTDDETY 324
            AQTCFFQLRLP Y+S+E+MAE+LRYAINNCKSIDMDNYMLARN +     DE Y
Sbjct: 4137 AQTCFFQLRLPPYTSQEIMAERLRYAINNCKSIDMDNYMLARNTDQGVVSDEEY 4190

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|390358768|ref|XP_796864.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|327286813|ref|XP_003228124.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|344293366|ref|XP_003418394.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Loxodonta africana] Back     alignment and taxonomy information
>gi|301610125|ref|XP_002934599.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|431895932|gb|ELK05350.1| Putative E3 ubiquitin-protein ligase HERC1 [Pteropus alecto] Back     alignment and taxonomy information
>gi|125821491|ref|XP_698091.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Danio rerio] Back     alignment and taxonomy information
>gi|426379401|ref|XP_004056386.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Gorilla gorilla gorilla] Back     alignment and taxonomy information
>gi|395502621|ref|XP_003755677.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|334314433|ref|XP_003340037.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Monodelphis domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query324
UNIPROTKB|J9NWD84118 HERC1 "Uncharacterized protein 0.537 0.042 0.689 2.3e-111
UNIPROTKB|Q157514861 HERC1 "Probable E3 ubiquitin-p 0.537 0.035 0.689 2.6e-111
UNIPROTKB|F1S0984859 HERC1 "Uncharacterized protein 0.537 0.035 0.689 4.3e-111
UNIPROTKB|E1C4H74863 HERC1 "Uncharacterized protein 0.537 0.035 0.683 8.9e-111
UNIPROTKB|F1MNS04857 HERC1 "Uncharacterized protein 0.537 0.035 0.685 3.8e-110
UNIPROTKB|E2QYQ54863 HERC1 "Uncharacterized protein 0.537 0.035 0.685 3.8e-110
UNIPROTKB|D4ACN34779 Herc2 "Protein Herc2" [Rattus 0.524 0.035 0.514 5.5e-62
UNIPROTKB|O957144834 HERC2 "E3 ubiquitin-protein li 0.524 0.035 0.508 5.7e-62
MGI|MGI:1032344836 Herc2 "hect (homologous to the 0.524 0.035 0.514 5.7e-62
UNIPROTKB|E2RDC24837 HERC2 "Uncharacterized protein 0.524 0.035 0.508 5.7e-62
UNIPROTKB|J9NWD8 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 645 (232.1 bits), Expect = 2.3e-111, Sum P(3) = 2.3e-111
 Identities = 120/174 (68%), Positives = 144/174 (82%)

Query:   151 VHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDL 210
             + YRLHEMD  VA +REGM+ I+PVPLLSL+T+  LEQ+VCG P IS+ +LK++VRYR++
Sbjct:  3945 IEYRLHEMDRQVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPEISVEVLKKVVRYREV 4004

Query:   211 DENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPANLADLSQRFQVMKVDRCIDGLPT 270
             DE H LV+W W  L+ FS+ ERVLFMRFVSGRSRLPAN AD+SQRFQ+MKVDR  D LPT
Sbjct:  4005 DEQHQLVQWFWHTLEEFSNEERVLFMRFVSGRSRLPANTADISQRFQIMKVDRPYDSLPT 4064

Query:   271 AQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSIDMDNYMLARNNEFASTDDETY 324
             +QTCFFQLRLP YSS+ VMAE+LRYAINNC+SIDMDNYML+RN + A   D  Y
Sbjct:  4065 SQTCFFQLRLPPYSSQLVMAERLRYAINNCRSIDMDNYMLSRNVDNAEGSDTDY 4118
GO:0005622 "intracellular" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q15751HERC1_HUMAN6, ., 3, ., 2, ., -0.68960.53390.0355yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-54
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 2e-52
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 2e-48
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 3e-27
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-09
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-07
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-07
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-06
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-06
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-04
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  181 bits (462), Expect = 1e-54
 Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 3/157 (1%)

Query: 151 VHYRLH-EMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRD 209
           V YRL+  ++  V   R+G + +IP  LLSL T   LE L+CG   I L  LK+   Y+ 
Sbjct: 196 VDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKG 255

Query: 210 LDE-NHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN-LADLSQRFQVMKVDRCIDG 267
               +   ++W WEVL+SF++ ER  F++FV+G SRLP    ADL+ +F + +V    D 
Sbjct: 256 GYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGSPDDR 315

Query: 268 LPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKSID 304
           LPTA TCF  L+LP YSSKE++ EKL YAIN      
Sbjct: 316 LPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG 352

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 324
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0942|consensus1001 100.0
KOG0941|consensus850 100.0
KOG0939|consensus720 100.0
KOG0170|consensus621 100.0
KOG4427|consensus1096 99.97
KOG1427|consensus443 99.89
KOG1427|consensus443 99.89
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 99.86
KOG0940|consensus358 99.82
KOG0943|consensus3015 99.81
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 99.8
KOG0783|consensus 1267 99.7
KOG1428|consensus 3738 99.54
KOG1428|consensus 3738 99.51
KOG0783|consensus 1267 99.45
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.45
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.36
KOG0941|consensus 850 99.16
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.1
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 98.79
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information 
Probab=100.00  E-value=1.3e-40  Score=308.47  Aligned_cols=160  Identities=42%  Similarity=0.746  Sum_probs=148.1

Q ss_pred             ceeeeeeeec-ccchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeec-CCCCCCHHHHHHHHH
Q psy15273        146 QHAVDVHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYR-DLDENHILVRWMWEV  223 (324)
Q Consensus       146 ~~iv~v~~~l-~~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~-g~~~~~~~i~~fw~~  223 (324)
                      +.-..+.+.+ +++..|+.+|++||..++|...+.+|++.|+++++||..+||+++|++++.|. ||+.+++.|+|||++
T Consensus       173 Yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~~~~~i~~Fw~v  252 (336)
T smart00119      173 YVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYSENSQTIKWFWEV  252 (336)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCCCCCHHHHHHHHH
Confidence            3334455666 57899999999999999999999999999999999999999999999999998 799999999999999


Q ss_pred             HhcCCHHHHhheeeeecCCCCCCCCC-cCCCcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHHhCcc
Q psy15273        224 LDSFSHNERVLFMRFVSGRSRLPANL-ADLSQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCKS  302 (324)
Q Consensus       224 ~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~~~~~  302 (324)
                      +++|++++|++||+|+||++|+|++| ..+.++|+|.+.+.++++||+||||||+|+||+|+|+|+|++||++||++|++
T Consensus       253 l~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~~~~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~~~~g  332 (336)
T smart00119      253 VESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKAGSDDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKG  332 (336)
T ss_pred             HHHCCHHHHHHhheeccCCCCCCCCchhhcCCceEEEECCCCCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999965 56678999998877889999999999999999999999999999999999999


Q ss_pred             ccc
Q psy15273        303 IDM  305 (324)
Q Consensus       303 ~~~  305 (324)
                      |++
T Consensus       333 F~l  335 (336)
T smart00119      333 FGL  335 (336)
T ss_pred             CCC
Confidence            986

E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 5e-23
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 4e-22
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 4e-18
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 1e-16
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 1e-15
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 3e-14
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 3e-14
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-13
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-04
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-13
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-13
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 4e-04
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-13
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-04
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 2e-13
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 3e-13
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 7e-13
3jvz_C385 E2~ubiquitin-Hect Length = 385 8e-13
3jw0_C385 E2~ubiquitin-Hect Length = 385 9e-13
3pt3_A118 Crystal Structure Of The C-Terminal Lobe Of The Hum 1e-06
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-04
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 4e-04
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 5e-04
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 162 VACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMW 221
           +A   EG   IIP  L+S+ T   LE L+ G P I +  LK    Y     N I ++W W
Sbjct: 237 LAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHKYQSNSIQIQWFW 296
Query: 222 EVLDSFSHNERVLFMRFVSGRSRLP----ANLADLS--QRFQVMKVDRCIDGLPTAQTCF 275
             L SF   +R  F++FV+G S++P    A L  ++  Q+FQ+ + DR  D LP+A TCF
Sbjct: 297 RALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCF 356
Query: 276 FQLRLPNYSSKEVMAEKLRYAINNC 300
            QL LP Y S E +   L  AI  C
Sbjct: 357 NQLDLPAYESFEKLRHMLLLAIQEC 381
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5 Hect Domain Length = 118 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query324
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-40
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-33
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 8e-33
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-32
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-30
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 7e-29
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-14
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 8e-40
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-39
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-39
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 3e-38
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-37
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 2e-36
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 4e-35
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-35
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-33
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-33
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-32
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-31
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-30
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-16
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-30
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-26
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-25
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-24
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-23
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-14
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-29
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-26
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-26
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 4e-25
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-24
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 4e-16
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-09
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-27
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-25
3of7_A 473 Regulator of chromosome condensation; beta-propell 3e-24
3of7_A473 Regulator of chromosome condensation; beta-propell 4e-23
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-23
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-22
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-15
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-12
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-09
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-09
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-08
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  143 bits (363), Expect = 6e-40
 Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)

Query: 29  SPVPSKVDSFTG--AQQVVCGQNCTFVLQVNGSVLSCGEGSYGRLGQGHSDDLHTPSIIS 86
             VP+  ++       Q++ G+   F +  +G + + G G+ GRLG G ++ + TP+++ 
Sbjct: 41  VKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLE 100

Query: 87  ALLGFIIIKVATSCGSDGHSLGLAESGEVFSWGDGDFGKLGHGNSDRQRRPRQIEALQGQ 146
           ++    I KVA + G   H L L+  GEV+SWG+ + GKLGHGN     RPR IE+L+G 
Sbjct: 101 SIQHVFIKKVAVNSGGK-HCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI 159

Query: 147 HAVDV 151
             VDV
Sbjct: 160 EVVDV 164
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 99.96
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 99.96
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 99.96
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 99.96
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 99.95
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 99.94
3of7_A473 Regulator of chromosome condensation; beta-propell 99.94
3mvd_K423 Regulator of chromosome condensation; protein-DNA 99.93
3mvd_K423 Regulator of chromosome condensation; protein-DNA 99.93
3of7_A473 Regulator of chromosome condensation; beta-propell 99.93
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 99.89
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 99.86
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.25
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.7e-42  Score=324.04  Aligned_cols=168  Identities=27%  Similarity=0.557  Sum_probs=145.2

Q ss_pred             cccccccceeeeeeeec-ccchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCCCCCCHHH
Q psy15273        139 QIEALQGQHAVDVHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILV  217 (324)
Q Consensus       139 ~V~~l~~~~iv~v~~~l-~~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~~~~i  217 (324)
                      ..++...+.-..+.+++ .++..|+.||++||++++|...+.+|+++|++.++||..++|+++|++++.|.||+.++++|
T Consensus       206 T~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~gy~~~~~~i  285 (380)
T 1zvd_A          206 NEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIV  285 (380)
T ss_dssp             TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEESSCTTSHHH
T ss_pred             ccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEecCCCCCcchh
Confidence            33344444445556776 47899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHhheeeeecCCCCCCCCC-cCC-----CcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHH
Q psy15273        218 RWMWEVLDSFSHNERVLFMRFVSGRSRLPANL-ADL-----SQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAE  291 (324)
Q Consensus       218 ~~fw~~~~~ls~~~~~~fL~F~TG~~~lP~~~-~~~-----~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~  291 (324)
                      +|||+++++|++++|++||+|+|||+|+|++| +.+     +++|+|.+.+.++++||+||||||+|+||+|+|+|+|++
T Consensus       286 ~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~  365 (380)
T 1zvd_A          286 KWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYE  365 (380)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCEETTEECCEEEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHH
T ss_pred             hhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhccccCCCCceEEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHH
Confidence            99999999999999999999999999999965 444     247999877778899999999999999999999999999


Q ss_pred             HHHHHHHhCcccccc
Q psy15273        292 KLRYAINNCKSIDMD  306 (324)
Q Consensus       292 kL~~Ai~~~~~~~~d  306 (324)
                      ||++||++++||++.
T Consensus       366 kL~~AI~~~~GF~l~  380 (380)
T 1zvd_A          366 KLLTAIEETCGFAVE  380 (380)
T ss_dssp             HHHHHHCC-------
T ss_pred             HHHHHHHhCCCcCcC
Confidence            999999999999874
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 324
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 2e-38
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 1e-36
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-14
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-13
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-13
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 7e-07
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-06
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-05
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 2e-38
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 7/160 (4%)

Query: 147 HAVDVHYRLHEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVR 206
             +        +        +G   ++P+  L       LE ++CG   + L+  ++   
Sbjct: 215 GLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTV 274

Query: 207 YRDLDENHILVRWMWEVLDSFSHNERVLFMRFVSGRSRLPAN------LADLSQRFQVMK 260
           YR    N   + W W+ +    +  R+  ++FV+G  RLP         ++  Q+F + K
Sbjct: 275 YRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEK 334

Query: 261 VDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNC 300
           V      LP + TCF +L LP Y S E + EKL +AI   
Sbjct: 335 VG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 373
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query324
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 99.89
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 99.86
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.74
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.64
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-38  Score=292.26  Aligned_cols=152  Identities=28%  Similarity=0.567  Sum_probs=138.0

Q ss_pred             eeeeeec-ccchhhHHHHhcCceeeecccccccccccccceEEeCCCccchhhhhcceeecCCCCCCHHHHHHHHHHhcC
Q psy15273        149 VDVHYRL-HEMDTAVACIREGMARIIPVPLLSLMTSSHLEQLVCGEPHISLSLLKQIVRYRDLDENHILVRWMWEVLDSF  227 (324)
Q Consensus       149 v~v~~~l-~~i~~ql~a~~~Gf~~vip~~~l~~f~~~el~~l~cG~~~i~v~~l~~~~~y~g~~~~~~~i~~fw~~~~~l  227 (324)
                      ..+.+.+ .++..++.+|++||..++|...+.+|++.|++.++||...+|+++|++++.|.+|+.+++.|+|||+++++|
T Consensus       216 ~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~  295 (374)
T d1nd7a_         216 LMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKET  295 (374)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHS
T ss_pred             HHHHHHHhccHHHHHHHHHHhHHHhCCHHHHhhCCHHHHHHhhCCCCCCCHHHHhhheeeccCCCCCHHHHHHHHHHHhc
Confidence            3345555 468999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhheeeeecCCCCCCCCC-cCC-----CcceEEeeeCCCCCCCceeccccceeecCCCCCHHHHHHHHHHHHHhCc
Q psy15273        228 SHNERVLFMRFVSGRSRLPANL-ADL-----SQRFQVMKVDRCIDGLPTAQTCFFQLRLPNYSSKEVMAEKLRYAINNCK  301 (324)
Q Consensus       228 s~~~~~~fL~F~TG~~~lP~~~-~~~-----~~~~~i~~~~~~~~~LP~a~TCf~~L~LP~Y~s~~~l~~kL~~Ai~~~~  301 (324)
                      ++++|++||+|+||++|+|++| ..+     +.++.|.+.+ ++++||+||||||+|+||+|+|+|+|++||++||+||+
T Consensus       296 t~ee~~~fL~FvTGs~rlP~~G~~~l~~~~~~~~~~i~~~~-~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e  374 (374)
T d1nd7a_         296 DNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVG-KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             CHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCEEEECCS-CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHhheeecCCCCCCCcchhhhcccCCCCceeeccCC-CCCCCCchhhhhcEeeCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999975 333     3467776554 56799999999999999999999999999999999985
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure