Psyllid ID: psy15410

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MTTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEVD
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHcccHHHHEEEEEccEEEEEEccccHHHHHHHHHccccccccEEcccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHcccHEEEEEEEcccEEEEEEcccccEEEEHHEcccccHHEEEEEEEEEEccccccccEEEc
Coil and Loop (DISEMBL)
MTTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQitsgdelelliipegvvpvLQFLKDHHTAQFVSLVdiagmdvpsrpnrfevd
Flexible Loop (DISEMBL)
mttirkpidevarshlVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVdiagmdvpsrpnrfevd
Low Complexity Region (SEG)
MTTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEVD
Disordered region (IsUnstruct)
**********VARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM************
Disordered Region (DISOPRED)
*TTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRF***
Disordered Region (DISEMBL)
MTTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEVD
Disordered Region (DISPRO)
*****KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEVD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q0MQG8	264	NADH dehydrogenase [ubiqu	yes	N/A	0.931	0.306	0.555	2e-21
O75489	264	NADH dehydrogenase [ubiqu	yes	N/A	0.931	0.306	0.555	2e-21
Q0MQG7	263	NADH dehydrogenase [ubiqu	N/A	N/A	0.931	0.307	0.555	2e-21
Q0MQG6	263	NADH dehydrogenase [ubiqu	N/A	N/A	0.931	0.307	0.555	2e-21
P23709	266	NADH dehydrogenase [ubiqu	yes	N/A	0.931	0.304	0.530	9e-21
Q9DCT2	263	NADH dehydrogenase [ubiqu	yes	N/A	0.931	0.307	0.530	2e-20
Q00673	276	Probable NADH-ubiquinone	N/A	N/A	0.873	0.275	0.402	2e-10
P23710	283	NADH-ubiquinone oxidoredu	N/A	N/A	0.816	0.250	0.388	2e-08
O21271	204	NADH-ubiquinone oxidoredu	N/A	N/A	0.804	0.343	0.380	1e-07
P34944	195	NADH dehydrogenase [ubiqu	N/A	N/A	0.770	0.343	0.455	2e-07

>sp|Q0MQG8|NDUS3_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Pan troglodytes GN=NDUFS3 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 6   KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
           +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct: 48  RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 107

Query: 66  FVSLVDIAGMDVPSRPNRFEV 86
           F SLVD+  +DVP+R NRFE+
Sbjct: 108 FKSLVDLTAVDVPTRQNRFEI 128

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Pan troglodytes (taxid: 9598)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: 3

>sp|O75489|NDUS3_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Homo sapiens GN=NDUFS3 PE=1 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 6   KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
           +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct: 48  RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 107

Query: 66  FVSLVDIAGMDVPSRPNRFEV 86
           F SLVD+  +DVP+R NRFE+
Sbjct: 108 FKSLVDLTAVDVPTRQNRFEI 128

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQG7|NDUS3_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS3 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 6   KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
           +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct: 47  RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 106

Query: 66  FVSLVDIAGMDVPSRPNRFEV 86
           F SLVD+  +DVP+R NRFE+
Sbjct: 107 FKSLVDLTAVDVPTRQNRFEI 127

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q0MQG6|NDUS3_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Pongo pygmaeus GN=NDUFS3 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/81 (55%), Positives = 63/81 (77%)

Query: 6   KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
           +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct: 47  RPRNDVAHQQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQ 106

Query: 66  FVSLVDIAGMDVPSRPNRFEV 86
           F SLVD+  +DVP+R NRFE+
Sbjct: 107 FKSLVDLTAVDVPTRQNRFEI 127

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P23709|NDUS3_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Bos taurus GN=NDUFS3 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 62/81 (76%)

Query: 6   KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
           +P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH  AQ
Sbjct: 50  RPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHSNAQ 109

Query: 66  FVSLVDIAGMDVPSRPNRFEV 86
           F SL D+  +D+P+R NRFE+
Sbjct: 110 FKSLADLTAVDIPTRQNRFEI 130

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q9DCT2|NDUS3_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial OS=Mus musculus GN=Ndufs3 PE=1 SV=2

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 59/81 (72%)

Query: 6   KPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQ 65
           +P  +V    L  FG+Y AEILPKY+++VQ++  DELE+ I P+GV+P L FL+DH  AQ
Sbjct: 47  RPRSDVTHKQLSAFGEYVAEILPKYVQQVQVSCLDELEICIHPDGVIPTLTFLRDHTNAQ 106

Query: 66  FVSLVDIAGMDVPSRPNRFEV 86
           F SL D+  +DVP+R NRFE+
Sbjct: 107 FKSLADLTAVDVPTRQNRFEI 127

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|Q00673|NDUS3_CANMA Probable NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial OS=Candida maltosa GN=ALI1 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 10  EVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSL 69
           +V    L  FG Y    LPKYI++  +   DEL + + P  + PV+ +LK+H + QF ++
Sbjct: 60  KVQIEELHKFGTYIMSCLPKYIQQFSVWK-DELTIYVAPSAIRPVMSYLKNHTSCQFKAV 118

Query: 70  VDIAGMDVPSRPNRFEV 86
           +DI   D PSR NRF+V
Sbjct: 119 MDITAADYPSRTNRFDV 135

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Candida maltosa (taxid: 5479)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P23710|NDUS3_NEUCR NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-31 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 15  HLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAG 74
           +L  +G +    LPKYI++  +   DEL + I P GV+PV  FLK +  A++  + DI  
Sbjct: 72  NLHKYGSWLMGCLPKYIQQFSVWK-DELTIYISPAGVIPVFSFLKYNTAAEYTQVSDITA 130

Query: 75  MDVPSRPNRFEV 86
           +D P++  RFEV
Sbjct: 131 VDFPTKDQRFEV 142

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|O21271|NDUS3_RECAM NADH-ubiquinone oxidoreductase subunit 9 OS=Reclinomonas americana GN=NAD9 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
          L +FG    ++ PKYI+K  I S  EL L + P  ++ +++ LK+H   QF SL D+  +
Sbjct: 10 LKEFGISLIKMFPKYIDKA-IYSKGELTLHVKPTNLIALMKILKNHTNCQFKSLSDLCAV 68

Query: 76 DVPSRPNRFEV 86
          D P +  RFE+
Sbjct: 69 DFPEKKERFEI 79

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Reclinomonas americana (taxid: 48483)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

>sp|P34944|NDUS3_MARPO NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Marchantia polymorpha GN=NAD9 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 19 FGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVP 78
          F K     LPK+I K Q TS  E  L   P  +  +L FLK H   +F  L+DI G+D P
Sbjct: 6  FFKSLIATLPKWIHKCQ-TSKHENILYTNPNSLFQLLYFLKYHTNTRFKVLIDICGVDYP 64

Query: 79 SRPNRFEV 86
          SR  RFEV
Sbjct: 65 SRKRRFEV 72

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Marchantia polymorpha (taxid: 3197)

EC: 1

EC: .

EC: 6

EC: .

EC: 9

EC: 9

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
91079210	257	PREDICTED: similar to AGAP006456-PA [Tri	0.954	0.322	0.785	4e-31
58388728	262	AGAP006456-PA [Anopheles gambiae str. PE	0.954	0.316	0.761	2e-30
194749201	261	GF10219 [Drosophila ananassae] gi|190624	0.954	0.318	0.773	7e-30
195587367	265	GD13354 [Drosophila simulans] gi|1941954	0.954	0.313	0.761	9e-30
195337045	265	GM14080 [Drosophila sechellia] gi|194128	0.954	0.313	0.761	9e-30
170055789	491	NADH dehydrogenase iron-sulfur protein 3	0.965	0.171	0.752	1e-29
195492783	265	GE21665 [Drosophila yakuba] gi|194180240	0.954	0.313	0.761	1e-29
194865281	265	GG14478 [Drosophila erecta] gi|190653134	0.954	0.313	0.761	1e-29
24656494	265	CG12079 [Drosophila melanogaster] gi|729	0.954	0.313	0.761	1e-29
195376229	267	GJ12236 [Drosophila virilis] gi|19415405	0.954	0.310	0.75	3e-29

>gi|91079210|ref|XP_966588.1| PREDICTED: similar to AGAP006456-PA [Tribolium castaneum] gi|270004834|gb|EFA01282.1| hypothetical protein TcasGA2_TC002817 [Tribolium castaneum]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 74/84 (88%), Gaps = 1/84 (1%)

Query: 3   TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
           T+RKP D +ARS L DFGKYCAE LPKYI+KVQIT+GDELELLI+PEGV+PVLQFLKDHH
Sbjct: 42  TVRKP-DLLARSQLKDFGKYCAECLPKYIQKVQITAGDELELLIVPEGVLPVLQFLKDHH 100

Query: 63  TAQFVSLVDIAGMDVPSRPNRFEV 86
            AQF ++ DIAGMDVPSR  RFEV
Sbjct: 101 NAQFANITDIAGMDVPSREYRFEV 124

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58388728|ref|XP_316497.2| AGAP006456-PA [Anopheles gambiae str. PEST] gi|55239226|gb|EAA11886.2| AGAP006456-PA [Anopheles gambiae str. PEST]

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/84 (76%), Positives = 73/84 (86%), Gaps = 1/84 (1%)

Query: 3   TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
           T+RKP D  ARS L +FGKY AE +PKY++KVQ+TSGDELE+LI PEGVVPVLQFLKDHH
Sbjct: 46  TVRKP-DAAARSELSEFGKYVAECMPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHH 104

Query: 63  TAQFVSLVDIAGMDVPSRPNRFEV 86
            AQF +LVDIAGMDVPSRP RFE+
Sbjct: 105 NAQFANLVDIAGMDVPSRPYRFEI 128

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194749201|ref|XP_001957028.1| GF10219 [Drosophila ananassae] gi|190624310|gb|EDV39834.1| GF10219 [Drosophila ananassae]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 74/84 (88%), Gaps = 1/84 (1%)

Query: 3   TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
           TIRKP D VAR+HL DFG+Y AE LPKY++KVQ+TSGDELE+LI PEGVVPVLQFLKDHH
Sbjct: 45  TIRKP-DAVARTHLSDFGRYVAECLPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHH 103

Query: 63  TAQFVSLVDIAGMDVPSRPNRFEV 86
            AQF +LVDIAG+DVP R +RFEV
Sbjct: 104 QAQFTNLVDIAGVDVPCRKHRFEV 127

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195587367|ref|XP_002083436.1| GD13354 [Drosophila simulans] gi|194195445|gb|EDX09021.1| GD13354 [Drosophila simulans]

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/84 (76%), Positives = 74/84 (88%), Gaps = 1/84 (1%)

Query: 3   TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
           T+R+P D VARSHL DFG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH
Sbjct: 48  TVRQP-DAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHH 106

Query: 63  TAQFVSLVDIAGMDVPSRPNRFEV 86
            AQF +LVDIAG+DVP R NRFEV
Sbjct: 107 QAQFTNLVDIAGVDVPCRKNRFEV 130

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195337045|ref|XP_002035143.1| GM14080 [Drosophila sechellia] gi|194128236|gb|EDW50279.1| GM14080 [Drosophila sechellia]

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/84 (76%), Positives = 74/84 (88%), Gaps = 1/84 (1%)

Query: 3   TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
           T+R+P D VARSHL DFG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH
Sbjct: 48  TVRQP-DAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHH 106

Query: 63  TAQFVSLVDIAGMDVPSRPNRFEV 86
            AQF +LVDIAG+DVP R NRFEV
Sbjct: 107 QAQFTNLVDIAGVDVPCRKNRFEV 130

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055789|ref|XP_001863738.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial [Culex quinquefasciatus] gi|167875613|gb|EDS38996.1| NADH dehydrogenase iron-sulfur protein 3, mitochondrial [Culex quinquefasciatus]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 72/85 (84%), Gaps = 1/85 (1%)

Query: 2   TTIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDH 61
            T+RKP D  AR+ L DFGKY AE +PKY++KVQ+TSGDELE+LI PEGVVPVLQFLKDH
Sbjct: 21  ATVRKP-DAAARADLSDFGKYVAECMPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDH 79

Query: 62  HTAQFVSLVDIAGMDVPSRPNRFEV 86
           H AQF +LVDIAGMDVPSR  RFEV
Sbjct: 80  HQAQFANLVDIAGMDVPSRQYRFEV 104

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195492783|ref|XP_002094139.1| GE21665 [Drosophila yakuba] gi|194180240|gb|EDW93851.1| GE21665 [Drosophila yakuba]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/84 (76%), Positives = 74/84 (88%), Gaps = 1/84 (1%)

Query: 3   TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
           T+R+P D VARSHL DFG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH
Sbjct: 48  TVRQP-DAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHH 106

Query: 63  TAQFVSLVDIAGMDVPSRPNRFEV 86
            AQF +LVDIAG+DVP R NRFEV
Sbjct: 107 QAQFTNLVDIAGVDVPCRKNRFEV 130

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865281|ref|XP_001971351.1| GG14478 [Drosophila erecta] gi|190653134|gb|EDV50377.1| GG14478 [Drosophila erecta]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/84 (76%), Positives = 74/84 (88%), Gaps = 1/84 (1%)

Query: 3   TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
           T+R+P D VARSHL DFG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH
Sbjct: 48  TVRQP-DAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHH 106

Query: 63  TAQFVSLVDIAGMDVPSRPNRFEV 86
            AQF +LVDIAG+DVP R NRFEV
Sbjct: 107 QAQFTNLVDIAGVDVPCRKNRFEV 130

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24656494|ref|NP_647775.1| CG12079 [Drosophila melanogaster] gi|7292316|gb|AAF47723.1| CG12079 [Drosophila melanogaster] gi|21428482|gb|AAM49901.1| LD25561p [Drosophila melanogaster] gi|40882445|gb|AAR96134.1| RH59487p [Drosophila melanogaster] gi|220944318|gb|ACL84702.1| CG12079-PA [synthetic construct] gi|220954090|gb|ACL89588.1| CG12079-PA [synthetic construct]

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/84 (76%), Positives = 74/84 (88%), Gaps = 1/84 (1%)

Query: 3   TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
           T+R+P D VARSHL DFG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH
Sbjct: 48  TVRQP-DAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHH 106

Query: 63  TAQFVSLVDIAGMDVPSRPNRFEV 86
            AQF +LVDIAG+DVP R NRFEV
Sbjct: 107 QAQFTNLVDIAGVDVPCRKNRFEV 130

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195376229|ref|XP_002046899.1| GJ12236 [Drosophila virilis] gi|194154057|gb|EDW69241.1| GJ12236 [Drosophila virilis]

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/84 (75%), Positives = 72/84 (85%), Gaps = 1/84 (1%)

Query: 3   TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
           T+RKP D  AR+ L DFG+Y AE LPKY++KVQ+TSGDELE+LI PEGVVPVLQFLKDHH
Sbjct: 47  TVRKP-DAAARTSLSDFGRYVAECLPKYVQKVQLTSGDELEVLIAPEGVVPVLQFLKDHH 105

Query: 63  TAQFVSLVDIAGMDVPSRPNRFEV 86
            AQF +LVDIAG+DVP R NRFEV
Sbjct: 106 QAQFTNLVDIAGLDVPCRKNRFEV 129

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
FB|FBgn0035404	265	CG12079 [Drosophila melanogast	0.954	0.313	0.761	2.3e-30
WB|WBGene00020417	445	nuo-2 [Caenorhabditis elegans	0.954	0.186	0.642	2.6e-22
ZFIN|ZDB-GENE-050417-274	255	ndufs3 "NADH dehydrogenase (ub	0.954	0.325	0.547	7e-22
UNIPROTKB|F1ND23	237	NDUFS3 "Uncharacterized protei	0.954	0.350	0.583	3e-21
UNIPROTKB|O75489	264	NDUFS3 "NADH dehydrogenase [ub	0.954	0.314	0.559	6.3e-21
UNIPROTKB|Q0MQG6	263	NDUFS3 "NADH dehydrogenase [ub	0.954	0.315	0.559	6.3e-21
UNIPROTKB|Q0MQG7	263	NDUFS3 "NADH dehydrogenase [ub	0.954	0.315	0.559	6.3e-21
UNIPROTKB|Q0MQG8	264	NDUFS3 "NADH dehydrogenase [ub	0.954	0.314	0.559	6.3e-21
RGD|1309406	264	Ndufs3 "NADH dehydrogenase (ub	0.954	0.314	0.547	8e-21
UNIPROTKB|P23709	266	NDUFS3 "NADH dehydrogenase [ub	0.954	0.312	0.535	1.3e-20

FB|FBgn0035404 CG12079 [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/84 (76%), Positives = 74/84 (88%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             T+R+P D VARSHL DFG+Y AE LPKY++KVQ+T+GDELE+LI PEGVVPVLQFLKDHH
Sbjct:    48 TVRQP-DAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQFLKDHH 106

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
              AQF +LVDIAG+DVP R NRFEV
Sbjct:   107 QAQFTNLVDIAGVDVPCRKNRFEV 130

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

WB|WBGene00020417 nuo-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 263 (97.6 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 54/84 (64%), Positives = 63/84 (75%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             TI K IDE  R  L +FGKY AE LPK+++KVQ  +GDELELLI P GVVPVL FLK +H
Sbjct:   220 TIWK-IDEHKRERLANFGKYAAECLPKFVQKVQFAAGDELELLIHPSGVVPVLSFLKGNH 278

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
             +AQF +L  I GMDVP+R NR EV
Sbjct:   279 SAQFTNLTFITGMDVPTRKNRLEV 302

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-050417-274 ndufs3 "NADH dehydrogenase (ubiquinone) Fe-S protein 3, (NADH-coenzyme Q reductase)" [Danio rerio (taxid:7955)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 46/84 (54%), Positives = 65/84 (77%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             T+R P D V  S L +FG+Y AEILPKY+++VQ+T  +ELE+++ PEG++PVL FLKDH 
Sbjct:    39 TVR-PKDPVTHSQLSEFGEYVAEILPKYVQQVQVTCFNELEIMVHPEGIIPVLTFLKDHT 97

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
              AQF +L D+  +D+PS+ NRFE+
Sbjct:    98 NAQFRNLADLTAVDIPSKQNRFEI 121

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1ND23 NDUFS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             T+R P +EV +  L  FG+Y AEILPKYI++VQ+T  +ELELLI P+G++PVL FL+DH 
Sbjct:    19 TVR-PKNEVEQKQLCAFGEYVAEILPKYIQQVQVTCFNELELLIHPDGIIPVLTFLRDHT 77

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
              AQF SL D+  +DVPSR  RFE+
Sbjct:    78 NAQFKSLADLTAVDVPSRQYRFEI 101

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

UNIPROTKB|O75489 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 47/84 (55%), Positives = 65/84 (77%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             T+R P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH 
Sbjct:    46 TVR-PRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHT 104

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
              AQF SLVD+  +DVP+R NRFE+
Sbjct:   105 NAQFKSLVDLTAVDVPTRQNRFEI 128

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0009055 "electron carrier activity" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0003954 "NADH dehydrogenase activity" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0005739 "mitochondrion" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q0MQG6 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Pongo pygmaeus (taxid:9600)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 47/84 (55%), Positives = 65/84 (77%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             T+R P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH 
Sbjct:    45 TVR-PRNDVAHQQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHT 103

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
              AQF SLVD+  +DVP+R NRFE+
Sbjct:   104 NAQFKSLVDLTAVDVPTRQNRFEI 127

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

UNIPROTKB|Q0MQG7 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 47/84 (55%), Positives = 65/84 (77%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             T+R P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH 
Sbjct:    45 TVR-PRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHT 103

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
              AQF SLVD+  +DVP+R NRFE+
Sbjct:   104 NAQFKSLVDLTAVDVPTRQNRFEI 127

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

UNIPROTKB|Q0MQG8 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Pan troglodytes (taxid:9598)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 47/84 (55%), Positives = 65/84 (77%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             T+R P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH 
Sbjct:    46 TVR-PRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHT 104

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
              AQF SLVD+  +DVP+R NRFE+
Sbjct:   105 NAQFKSLVDLTAVDVPTRQNRFEI 128

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

RGD|1309406 Ndufs3 "NADH dehydrogenase (ubiquinone) Fe-S protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 46/84 (54%), Positives = 61/84 (72%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             T+R P  +V    L  FG+Y AEILPKY+++VQ+T  DELE+ I P+GV+P + FLKDH 
Sbjct:    46 TVR-PSSDVTHKRLSAFGEYVAEILPKYVQQVQVTCFDELEICIHPDGVIPTITFLKDHT 104

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
              AQF SL D+  +DVP+R NRFE+
Sbjct:   105 NAQFKSLADLTAVDVPTRQNRFEI 128

GO:0003674 "molecular_function" evidence=ND

GO:0003954 "NADH dehydrogenase activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030308 "negative regulation of cell growth" evidence=IEA;ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA;ISO

UNIPROTKB|P23709 NDUFS3 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 45/84 (53%), Positives = 64/84 (76%)

Query:     3 TIRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHH 62
             T+R P ++VA   L  FG+Y AEILPKY+++VQ++  +ELE+ I P+GV+PVL FL+DH 
Sbjct:    48 TVR-PRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEICIHPDGVIPVLTFLRDHS 106

Query:    63 TAQFVSLVDIAGMDVPSRPNRFEV 86
              AQF SL D+  +D+P+R NRFE+
Sbjct:   107 NAQFKSLADLTAVDIPTRQNRFEI 130

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0072593 "reactive oxygen species metabolic process" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0MQG8	NDUS3_PANTR	1, ., 6, ., 9, 9, ., 3	0.5555	0.9310	0.3068	yes	N/A
O75489	NDUS3_HUMAN	1, ., 6, ., 9, 9, ., 3	0.5555	0.9310	0.3068	yes	N/A
Q9DCT2	NDUS3_MOUSE	1, ., 6, ., 9, 9, ., 3	0.5308	0.9310	0.3079	yes	N/A
P23709	NDUS3_BOVIN	1, ., 6, ., 9, 9, ., 3	0.5308	0.9310	0.3045	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.99	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
PRK06074	189	PRK06074, PRK06074, NADH dehydrogenase subunit C;	4e-12
COG0852	176	COG0852, NuoC, NADH:ubiquinone oxidoreductase 27 k	3e-06
TIGR01961	121	TIGR01961, NuoC_fam, NADH (or F420H2) dehydrogenas	1e-04

>gnl|CDD|235691 PRK06074, PRK06074, NADH dehydrogenase subunit C; Provisional

 Score = 58.0 bits (141), Expect = 4e-12
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGM 75
          L +      E LP  I KV +  G EL L +  E ++ VL FL+D    +F  L+D+ G+
Sbjct: 4  LEELVAKLLEKLPDAIGKVTVAFG-ELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGV 62

Query: 76 DVPSRPNRFEV 86
          D P R  RFEV
Sbjct: 63 DYPERGKRFEV 73

Length = 189

>gnl|CDD|223921 COG0852, NuoC, NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 27 LPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV 86
          L   IE V + +  EL L + P+ ++ VL+ LKD     F  L+D+ G+D P    RFEV
Sbjct: 17 LSTVIETV-VVAEGELTLKVPPDELIDVLKALKDE---GFDHLLDLTGVDYPQETERFEV 72

Length = 176

>gnl|CDD|233657 TIGR01961, NuoC_fam, NADH (or F420H2) dehydrogenase, subunit C

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 46 IIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV 86
          I  E ++ VL FLKD     F  L D++G+D P    RFEV
Sbjct: 5  IKKEQLLEVLTFLKDPA-LGFELLTDVSGVDYPKE-KRFEV 43

This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
PRK07785	235	NADH dehydrogenase subunit C; Provisional	99.5
PRK07735	430	NADH dehydrogenase subunit C; Validated	99.44
PRK06074	189	NADH dehydrogenase subunit C; Provisional	99.25
PRK13292	788	trifunctional NADH dehydrogenase I subunit B/C/D;	99.23
PRK08491	263	NADH dehydrogenase subunit C; Provisional	98.97
COG0852	176	NuoC NADH:ubiquinone oxidoreductase 27 kD subunit	98.93
PRK11742	575	bifunctional NADH:ubiquinone oxidoreductase subuni	98.93
KOG1713|consensus	191		98.91
CHL00012	158	ndhJ NADH dehydrogenase subunit J	98.74
PRK12494	172	NADH dehydrogenase subunit J; Provisional	98.35
TIGR01961	121	NuoC_fam NADH (or F420H2) dehydrogenase, subunit C	97.9
PF00329	103	Complex1_30kDa: Respiratory-chain NADH dehydrogena	97.36
COG3262	165	HycE Ni,Fe-hydrogenase III component G [Energy pro	86.23
PF04446	135	Thg1: tRNAHis guanylyltransferase; InterPro: IPR00	81.97

>PRK07785 NADH dehydrogenase subunit C; Provisional

Probab=99.50  E-value=7.4e-14  Score=100.15  Aligned_cols=70  Identities=21%  Similarity=0.288  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCC-Cceee
Q psy15410         15 HLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRP-NRFEV   86 (87)
Q Consensus        15 ~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~-~RFeV   86 (87)
                      -.+.+.+.| +.|+++|.++.+. .+++++.|+++.+.+++++||++++++|++|+||||||||... .||+|
T Consensus        66 ~~~~l~~~~-~~f~~ai~~~~~~-~~~~~~~V~~e~l~~v~~~Lkd~~~l~F~~l~~vtgVDyp~~~g~~f~v  136 (235)
T PRK07785         66 VADRLEEAL-PEFADAIERVVVD-RGELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHDTGRELHA  136 (235)
T ss_pred             HHHHHHHHH-HhhhhheeEEEEe-CCeEEEEEcHHHHHHHHHHHHhCccCCcceEeeEEEEecCCCCCCEEEE
Confidence            344556666 7899999999888 7999999999999999999999999999999999999999764 68886

>PRK07735 NADH dehydrogenase subunit C; Validated

Probab=99.44  E-value=8.9e-14  Score=105.96  Aligned_cols=68  Identities=24%  Similarity=0.286  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhcCCceeEEEE----eeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCCCceee
Q psy15410         15 HLVDFGKYCAEILPKYIEKVQI----TSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV   86 (87)
Q Consensus        15 ~l~~i~~~L~~~fp~~i~~~~~----~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV   86 (87)
                      +|+.+.+.|.+.||+.|.....    . .++++|+|+++.|.+||.|||+++.++|++|+||||||||.   ||+|
T Consensus       277 ~l~~l~~~L~e~fg~~i~~~~~i~~~~-~d~lti~V~~e~L~eV~~~Lrd~~~l~Fd~LsdLtGVDy~~---rFeV  348 (430)
T PRK07735        277 YLNKYVEVIKEKLGEDVLEDSYINKLS-KDVPTLVVEPEKYYEVAELLRFHEQLAFDYLSELHGTDFVT---HMEV  348 (430)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccc-CCceEEEEcHHHHHHHHHHHHhCcccCCCeeeeEEeEecCC---cEEE
Confidence            5888999999999998876543    3 58999999999999999999999999999999999999984   8987

>PRK06074 NADH dehydrogenase subunit C; Provisional

Probab=99.25  E-value=2.6e-11  Score=84.44  Aligned_cols=71  Identities=38%  Similarity=0.582  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCCCceee
Q psy15410         15 HLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV   86 (87)
Q Consensus        15 ~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV   86 (87)
                      ..+++.+.|+++||+.+.+.... .+.+++.|+++.+.+++.+||++.+++|.+|+++||||||+.+++|+|
T Consensus         3 ~~~~~~~~l~~~f~~~~~~~~~~-~~~~~~~v~~~~l~~v~~~L~~~~~~~f~~L~~l~avD~~~~~~~f~v   73 (189)
T PRK06074          3 KLEELVAKLLEKLPDAIGKVTVA-FGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEV   73 (189)
T ss_pred             cHHHHHHHHHHHccccEEEEEEe-CCeEEEEEcHHHHHHHHHHHHhCcccCCCeEEEEEEEecCCCCCcEEE
Confidence            35778999999999999888776 689999999999999999999986689999999999999987778886

>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional

Probab=99.23  E-value=2.2e-11  Score=99.19  Aligned_cols=69  Identities=25%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCC-----CCceee
Q psy15410         17 VDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSR-----PNRFEV   86 (87)
Q Consensus        17 ~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~-----~~RFeV   86 (87)
                      .++.+.|+++||+.+...... .+++++.|+++.+.++++|||++++++|++|+|+||||||.+     .+||+|
T Consensus       222 ~~l~~~l~~~f~~~v~~~~~~-~~~~~~~v~~e~l~~v~~~Lk~~~~~~f~~L~ditaVD~~~~~~~~~~~~f~v  295 (788)
T PRK13292        222 FGLAGELEGAFGDDVRLDEGA-TDMLTYRCPPELVPEVLRHLKKRASSPFRRLEDLAAVDESCRRDREKFPDFTV  295 (788)
T ss_pred             HHHHHHHHHHcccceEeeeec-CCcEEEEEcHHHHHHHHHHHHhCcCCCCceeeeEEEEeCCcccccCcCCcEEE
Confidence            347888999999877655555 689999999999999999999999999999999999999863     468987

>PRK08491 NADH dehydrogenase subunit C; Provisional

Probab=98.97  E-value=1.3e-09  Score=79.47  Aligned_cols=72  Identities=21%  Similarity=0.187  Sum_probs=58.0

Q ss_pred             CHHHhhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCCCceee
Q psy15410          9 DEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV   86 (87)
Q Consensus         9 ~~~~~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV   86 (87)
                      .++..+.+....+.|...+  .|...... .+++++.|+++.+.+++.+||   +++|++|+++|||||+...++|+|
T Consensus        29 ~~~~~~~~~~~l~~l~~~~--~i~~~~~~-~~~~~i~V~~e~l~~V~~~Lk---~~gf~~L~~itaVD~~~~~~~FeV  100 (263)
T PRK08491         29 SYVEGSVFEKDLNHLSYKV--EILESYIE-LDQAVIWIKKDDNFKVLKILK---HLGYECLSEMSAIDFLAKKGGFEV  100 (263)
T ss_pred             cccchhHHHHHHHHhcCCe--EEEEEEee-CCcEEEEEcHHHHHHHHHHHH---HcCCCeEEEEEeEecCCCCCcEEE
Confidence            3444556666666666665  35555555 799999999999999999999   488999999999999988889987

>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]

Probab=98.93  E-value=8.6e-10  Score=76.33  Aligned_cols=67  Identities=36%  Similarity=0.563  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCCCceee
Q psy15410         16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV   86 (87)
Q Consensus        16 l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV   86 (87)
                      +.+....+.+.++..+...... .+++++.+.++.+..+|++||++.   |.+|.|+||||||++.+||+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~Lk~~~---f~~l~d~~gvD~~~~~~~Fev   72 (176)
T COG0852           6 LAELLERLLAELSTVIETVVVA-EGELTLKVPPDELIDVLKALKDEG---FDHLLDLTGVDYPQETERFEV   72 (176)
T ss_pred             hHHHHHhhhhhhhheeeeecee-eeeEEEecCHHHHHHHHHHHhhhh---HHHHHHhhcccccccCCcEEE
Confidence            4556677777888777777665 679999999999999999999975   999999999999999999987

>PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional

Probab=98.93  E-value=1.9e-09  Score=85.53  Aligned_cols=66  Identities=24%  Similarity=0.251  Sum_probs=54.8

Q ss_pred             HHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCC-------CCceee
Q psy15410         20 GKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSR-------PNRFEV   86 (87)
Q Consensus        20 ~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~-------~~RFeV   86 (87)
                      ++.|+++||+++........++++++|+++.+.+++.+||+ .+++|++|+|+|||||+.+       .+||+|
T Consensus         2 ~~~l~~~f~~~~~~~~~~~~~~~~~~v~~e~l~~v~~~Lk~-~~~~f~~L~~lt~vD~~~~~~~~~~~~~~fev   74 (575)
T PRK11742          2 IGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRK-LPKPYVMLFDLHGIDERLRTHREGLPAADFTV   74 (575)
T ss_pred             hHHHHhhcccceeeeEeccCCcEEEEEcHHHHHHHHHHHhc-cCCCCceEEEEEEEecCcccccccCCCCceEE
Confidence            46789999998776554435889999999999999999994 4679999999999999842       457886

>KOG1713|consensus

Probab=98.91  E-value=1.3e-10  Score=79.73  Aligned_cols=72  Identities=64%  Similarity=1.003  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCCCceeeC
Q psy15410         16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEVD   87 (87)
Q Consensus        16 l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV~   87 (87)
                      +.....+..+.+|+.++++.....+++.+.+++++.++|+.|||.+..++|+.+.||||||-|.+++||||.
T Consensus         4 ~~~fg~ya~e~Lpk~~~k~~~~~~~~lei~~~~~~~i~vl~flk~h~y~r~q~~~Diagvdvp~rk~rfevv   75 (191)
T KOG1713|consen    4 LTLFGKYAAECLPKRVQKVQYQAGDELEILIHPDGVIPVLLFLKGHTYARFQNLYDIAGVDVPTRKNRFEVV   75 (191)
T ss_pred             hhHHHHHHHHhhhHHHHhhhhhcccceeeecCCCceeEEEeeeecccceeeeEeEeecCCCcccccceeEEe
Confidence            344567788889998888877656889999999999999999999999999999999999999999999983

>CHL00012 ndhJ NADH dehydrogenase subunit J

Probab=98.74  E-value=9.1e-09  Score=70.21  Aligned_cols=54  Identities=17%  Similarity=0.043  Sum_probs=44.4

Q ss_pred             cCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCCCceee
Q psy15410         27 LPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV   86 (87)
Q Consensus        27 fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV   86 (87)
                      |-..+.+++.  .++++++|+++.+.+++.+||+   .+|++|+|+|||||+. ++||+|
T Consensus        14 ~~~~~~~~~~--~~~~~~~V~~~~l~~v~~~Lk~---~gf~~L~~lt~vD~~~-~~~fev   67 (158)
T CHL00012         14 LVHRSLGFDY--QGIETLQIKPEDWHSIAVILYV---YGYNYLRSQCAYDVAP-GGLLAS   67 (158)
T ss_pred             CCcccCCCCC--CCCEEEEEcHHHHHHHHHHHHH---cCCCceeEEEEEEcCC-CCeEEE
Confidence            3344555444  4899999999999999999995   6899999999999976 567987

>PRK12494 NADH dehydrogenase subunit J; Provisional

Probab=98.35  E-value=7.9e-07  Score=61.27  Aligned_cols=63  Identities=13%  Similarity=0.040  Sum_probs=54.1

Q ss_pred             HHHHHHHHh-cCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCCCceee
Q psy15410         18 DFGKYCAEI-LPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV   86 (87)
Q Consensus        18 ~i~~~L~~~-fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV   86 (87)
                      .+++.|++. |+..+.....  .+...+.|+++.+.+++++||+   .+|++|++++||||+. ++||++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~V~~~~l~~v~~~L~~---~g~~~l~~~~~vD~~~-~~~~~v   81 (172)
T PRK12494         18 PVSQWLTENGFEHESLGPDH--LGVEIIKVEPDFLLPIATALYA---YGFNYLQCQGGYDEGP-GKELVS   81 (172)
T ss_pred             hHHHHHHHcCCCcccccccc--CCCEEEEEcHHHHHHHHHHHHH---CCCCEEEEEEeEccCC-CCEEEE
Confidence            477899999 9998887764  5889999999999999999996   4799999999999975 557765

>TIGR01961 NuoC_fam NADH (or F420H2) dehydrogenase, subunit C

Probab=97.90  E-value=1.2e-05  Score=51.92  Aligned_cols=43  Identities=44%  Similarity=0.688  Sum_probs=36.8

Q ss_pred             EEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCCCCceee
Q psy15410         42 LELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV   86 (87)
Q Consensus        42 l~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV   86 (87)
                      +++.|+++.+.+++..||++ ..+|.+|++++|+|+|+.. +|++
T Consensus         1 ~~~~v~~~~l~~v~~~l~~~-~~~~~~l~~i~a~D~~~~~-~~~~   43 (121)
T TIGR01961         1 LVIWIKKEQLLEVLTFLKDP-ALGFELLTDVSGVDYPKEK-RFEV   43 (121)
T ss_pred             CEEEEeHHHHHHHHHHHHhc-cCCCCeEeEEEEEecCCCC-eEEE
Confidence            36789999999999999976 6789999999999998654 5765

This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and

>PF00329 Complex1_30kDa: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; InterPro: IPR001268 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=97.36  E-value=0.00018  Score=45.25  Aligned_cols=30  Identities=47%  Similarity=0.658  Sum_probs=23.6

Q ss_pred             HHHHHhhcCccCCccccccceeeeCCCCCCceee
Q psy15410         53 PVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFEV   86 (87)
Q Consensus        53 ~vl~fLKdd~~l~F~~L~DItgVDyp~~~~RFeV   86 (87)
                      +++++||++   +|..|+++||+|+++++ +|+|
T Consensus         1 e~~~~L~~~---~~~~l~~i~~~D~~~~~-~~~v   30 (103)
T PF00329_consen    1 EVAKFLKDE---GGARLVTITAVDYPEEG-RFEV   30 (103)
T ss_dssp             -HHHHHHHT---T--EEEEEEEEE-TTST-SEEE
T ss_pred             CHHHHHHHC---CCCeEEEEEEEECCCCC-eEEE
Confidence            589999996   79999999999999987 7886

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. The 30 kDa subunit from NADH:ubiquinone oxidoreductase is found in both eukaryotes and prokaryotes. In mammals and in Neurospora crassa, it is nuclear-encoded as a precursor form with a transit peptide, while in Paramecium (protein P1), in the Dictyostelium discoideum (Slime mold) it is mitochondrial-encoded and it is chloroplast-encoded in various higher plants. It is also present in bacteria.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 2YBB_5 3IAS_E 2FUG_E 3I9V_5 3M9S_E 3IAM_5 3MCR_A.

>COG3262 HycE Ni,Fe-hydrogenase III component G [Energy production and conversion]

Probab=86.23  E-value=0.72  Score=31.77  Aligned_cols=45  Identities=16%  Similarity=0.106  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhc
Q psy15410         16 LVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKD   60 (87)
Q Consensus        16 l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKd   60 (87)
                      -+.+...|.++||+.|.+-.-....+++++|..+.+.++++||+.
T Consensus         6 ~e~~~~el~~~fpg~i~~e~~~~~~~~~~~V~~~~l~~~~e~l~~   50 (165)
T COG3262           6 GEEILAELNERFPGVVLDEERQTRSQLTVTVKREYLPDVVEFLYY   50 (165)
T ss_pred             HHHHHHHHHHhCcchhhhhhhhchhheeEEeeHhhhHHHHHHHHH
Confidence            346778899999996654443336899999999999999999995

>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His []

Probab=81.97  E-value=8.2  Score=25.59  Aligned_cols=44  Identities=20%  Similarity=0.234  Sum_probs=33.7

Q ss_pred             ccCCCCHHHhhHHHHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCC
Q psy15410          4 IRKPIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPE   49 (87)
Q Consensus         4 ~~~~~~~~~~~~l~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e   49 (87)
                      ..||-|.-..+.+.+.+..|.+.+++.+.....  .+|.++...+.
T Consensus        40 f~KP~D~r~~~~M~~aa~~l~~~~~~~~~aY~~--SDEiSfvf~~~   83 (135)
T PF04446_consen   40 FEKPNDERFLKAMNEAAKALMEEFPDIVLAYGQ--SDEISFVFRKS   83 (135)
T ss_dssp             --SS--HHHHHHHHHHHHHHHHHSSSEEEEEEE--TTEEEEEE-TT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEc--CCeeEEEECCC
Confidence            469999999999999999999999986666665  49999998763

; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
3mcr_A	213	NADH dehydrogenase, subunit C; structural genomics	1e-18
3i9v_5	207	NADH-quinone oxidoreductase subunit 5; electron tr	1e-10

>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca} Length = 213

 Score = 75.6 bits (186), Expect = 1e-18
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 3/81 (3%)

Query: 7   PIDEVARSHLVDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQF 66
             DEVA + L    K         I +V +  G E+   +  E ++ V   L+D    +F
Sbjct: 76  YFDEVADA-LERSLKEIGTPYDTAISRVVVDRG-EITFHVQREHLLDVATRLRDDPALRF 133

Query: 67  VSLVDIAGMDVPSRP-NRFEV 86
              + + G+  P    N    
Sbjct: 134 ELCLGVTGVHYPEDEGNELHA 154

>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5* Length = 207

 Score = 54.0 bits (130), Expect = 1e-10
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 17 VDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMD 76
          +   +   E   K    ++      L +++  E     +   K      F  L DI G+D
Sbjct: 1  MRLERVLEEARAKGY-PIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLD 56

Query: 77 VPS----RPNRFEV 86
            +    RP RF V
Sbjct: 57 YLTYPDPRPERFAV 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
3mcr_A	213	NADH dehydrogenase, subunit C; structural genomics	99.56
3i9v_5	207	NADH-quinone oxidoreductase subunit 5; electron tr	98.8

>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca}

Probab=99.56  E-value=7.2e-15  Score=103.08  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHh-------cCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCCC-CCcee
Q psy15410         14 SHLVDFGKYCAEI-------LPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSR-PNRFE   85 (87)
Q Consensus        14 ~~l~~i~~~L~~~-------fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~~-~~RFe   85 (87)
                      .+++++++.|.+.       ||++|.++.+. .+++++.|+++.|.+++++||++++++|++|+||||||||+. ..||+
T Consensus        75 ~~~d~v~d~L~e~l~~~~~~f~~~i~~~~~~-~~eltl~V~~e~l~~v~~~Lkd~~~~~F~~L~dltgVDy~~~~g~rFe  153 (213)
T 3mcr_A           75 AYFDEVADALERSLKEIGTPYDTAISRVVVD-RGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELH  153 (213)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHEEEEEEE-TTEEEEEECGGGHHHHHHHHHHCTTTCCCEEEEEEEEECTTSTTCCEE
T ss_pred             ccHHHHHHHHHHHHhhcccccccceeEEEEE-CCEEEEEEcHHHHHHHHHHHHhCcCCCcceEEEEEeecccccCCCeeE
Confidence            3567777777776       55789999888 899999999999999999999999999999999999999984 56898


Q ss_pred             e
Q psy15410         86 V   86 (87)
Q Consensus        86 V   86 (87)
                      |
T Consensus       154 V  154 (213)
T 3mcr_A          154 A  154 (213)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5*

Probab=98.80  E-value=1.2e-09  Score=76.23  Aligned_cols=63  Identities=22%  Similarity=0.216  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCC----CCCceee
Q psy15410         17 VDFGKYCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPS----RPNRFEV   86 (87)
Q Consensus        17 ~~i~~~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~----~~~RFeV   86 (87)
                      ..+.+.++++-.+    ++....+++++.|+++.+.+++++||+   ++|++|+|+|||||+.    +.+||+|
T Consensus         4 ~~~~~~~~~~~~~----~~~~~~g~~~v~V~~e~l~~v~~~Lk~---~gf~~L~~l~gvD~~~~~~~~~~~f~v   70 (207)
T 3i9v_5            4 ERVLEEARAKGYP----IEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAV   70 (207)
T ss_dssp             HHHHHHHHHTTCC----CCBCTTSCBEEECCHHHHHHHHHHHHH---TTCCCEEEEEEEECTTCSSCCSSSEEE
T ss_pred             HHHHHHHHhcCCc----eeeccCCcEEEEEcHHHHHHHHHHHHH---CCCCeEEEEEeEECCccCCCCCCeEEE
Confidence            4455566666432    232214899999999999999999996   7899999999999964    4678987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	87
d2fug51	196	d.307.1.1 (5:1-196) NADH-quinone oxidoreductase ch	0.001

>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus thermophilus [TaxId: 274]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nqo5-like
superfamily: Nqo5-like
family: Nqo5-like
domain: NADH-quinone oxidoreductase chain 5, Nqo5
species: Thermus thermophilus [TaxId: 274]

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 33 KVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPSRPNRFE 85
           ++      L +++  E     +   K      F  L DI G+D  + P+   
Sbjct: 16 PIEDNGLGNLWVVLPRERFKEEMAHYKAM---GFNFLADIVGLDYLTYPDPRP 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d2fug51	196	NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus	99.11

>d2fug51 d.307.1.1 (5:1-196) NADH-quinone oxidoreductase chain 5, Nqo5 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nqo5-like
superfamily: Nqo5-like
family: Nqo5-like
domain: NADH-quinone oxidoreductase chain 5, Nqo5
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=8.8e-11  Score=79.75  Aligned_cols=61  Identities=26%  Similarity=0.254  Sum_probs=46.6

Q ss_pred             HHHHhcCCceeEEEEeeCCeEEEEEcCCChHHHHHHhhcCccCCccccccceeeeCCC----CCCceee
Q psy15410         22 YCAEILPKYIEKVQITSGDELELLIIPEGVVPVLQFLKDHHTAQFVSLVDIAGMDVPS----RPNRFEV   86 (87)
Q Consensus        22 ~L~~~fp~~i~~~~~~~~~el~i~i~~e~l~~vl~fLKdd~~l~F~~L~DItgVDyp~----~~~RFeV   86 (87)
                      .|++...+.+..-... .++++|.|+++.+.+++++||+   ++|++|+|||||||+.    +.+||+|
T Consensus         6 ~Le~a~~~g~~ve~~~-~g~l~I~V~~e~l~evl~~LKe---~gF~~L~dITaVD~~~~~e~~~~rfev   70 (196)
T d2fug51           6 VLEEARAKGYPIEDNG-LGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAV   70 (196)
T ss_dssp             HHHHHHTTTCCEEECS-SSCEEEECCSTTHHHHHHHTTT---TTCCCCCCEEEEECTTCSSCCSSSEEE
T ss_pred             HHHHhHhcCCeeeecc-CCcEEEEEcHHHHHHHHHHHHh---CCCCceeEEEeEcCCCcCcCccceeEE
Confidence            3444444433222223 5899999999999999999994   7899999999999974    5678987