Psyllid ID: psy15469

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRASDDANECR
ccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEEEEEccccEEEEEEEEEEcccccccEEEEEEcccccccEEEEEEHHHHHHHcccccccccccccccccEEEccccccccccccccEEEEccccccccccccccHHHHHHHHHcccEEEEccccccccccccccccccccEEEEEEEEEEEEEEEcccccccccccccccccccEEEccccccccccccccccccccccccccccccccc
cccccccHHHHHHcccEEEEEcccccccccccccHcEEcccccccccEEcccccccccHHHHccccccccEEEccccccccccccEEEEEEEcccEEEEEEEEEEEcccccccEEEEEEcccccccEEEEEEcHHHHHHccccccccccccccccEEEEcccccccccccccEEEEEEcccccccccccccHHHHHHHccccEEEEEEcccccccccccccHHcEEEEEEEEcEEEccEEEEccccccccccccccccccEEEEEccccccccHHHccccccccccccccccccccc
mdnrcippfenaafsasvestntcgyqngvpqptrfcvqsgthvtantcdycyedthpvryltdlsntttwwqsttmydgvqwpnqvnitlkfgktfDVTYVRLLfwsprpesFAIYKKtyensswtpfqfysascqetyglpddnsgkandsdtrvfctseysdlspltggavpfatlegryraktfsynlNLQEFVTATEIRITLDRLNTfydelfldpsvlrSYFYAIADisvgarckcnghasecpyvrqsdgstrrvcrcehntagpdcnecapfyndapwrrasddanecr
MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTseysdlspltggAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCKCNGHASecpyvrqsdgstrRVCRCEhntagpdcnecapfyndapwrrasddanecr
MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRASDDANECR
********************TNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGL*************RVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAP************
*DNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDD******DSDTRVFCTSE***********VPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDA*************
MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCKCNGHASECPY*********RVCRCEHNTAGPDCNECAPFYNDAPWRR*********
***RCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWR**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRASDDANECR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query297 2.2.26 [Sep-21-2011]
Q18823 1633 Laminin-like protein lam- yes N/A 0.969 0.176 0.563 2e-92
P15215 1639 Laminin subunit gamma-1 O yes N/A 0.973 0.176 0.542 1e-91
A0JP86 1592 Laminin subunit gamma-1 O yes N/A 0.956 0.178 0.523 5e-85
Q1LVF0 1593 Laminin subunit gamma-1 O no N/A 0.956 0.178 0.523 2e-84
P11047 1609 Laminin subunit gamma-1 O yes N/A 0.956 0.176 0.516 2e-83
Q9R0B6 1581 Laminin subunit gamma-3 O no N/A 0.956 0.179 0.509 9e-83
P02468 1607 Laminin subunit gamma-1 O yes N/A 0.946 0.174 0.510 2e-82
Q9Y6N6 1575 Laminin subunit gamma-3 O no N/A 0.959 0.180 0.498 3e-81
Q90922 606 Netrin-1 OS=Gallus gallus no N/A 0.952 0.466 0.449 1e-64
O95631 604 Netrin-1 OS=Homo sapiens no N/A 0.942 0.463 0.456 7e-64
>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis elegans GN=lam-2 PE=1 SV=3 Back     alignment and function desciption
 Score =  339 bits (869), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 169/300 (56%), Positives = 208/300 (69%), Gaps = 12/300 (4%)

Query: 4   RCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYED----THPV 59
           RC+P F NAAF+  V+ TNTCG +    +PT+FCVQSG     + C+ C +     +HP 
Sbjct: 50  RCVPDFVNAAFNLEVQVTNTCGTK----RPTKFCVQSGHTGQRSVCETCDDRHEGFSHPA 105

Query: 60  RYLTD--LSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIY 117
           +YLTD  + N  TWWQS TM +G Q+P   N+TL  GK+FD+TYVRL F SPRPESF IY
Sbjct: 106 KYLTDFNVGNNETWWQSDTMQEGQQYPTTTNLTLVLGKSFDITYVRLKFISPRPESFTIY 165

Query: 118 KKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFA 177
           KKT+ +S W P+QFYS SC+ TYGL D       +  T   CT E+SD+SP+TGG + F+
Sbjct: 166 KKTHTDSEWEPWQFYSGSCRATYGLSDRAPILPGNEAT-AQCTKEFSDISPITGGNIAFS 224

Query: 178 TLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVG 237
           TLEGR  A  F  +  LQ++VTA+ IRI+L+R+NTF DE+F DP VLRSY+YAI+D +VG
Sbjct: 225 TLEGRPSAHAFEESEVLQKWVTASAIRISLNRMNTFGDEVFKDPQVLRSYYYAISDFAVG 284

Query: 238 ARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRA-SDDANEC 296
            RCKCNGHASEC      DG  R VCRCEHNT G DCNEC PFYND PWR   S +ANEC
Sbjct: 285 GRCKCNGHASECVGSSSVDGENRLVCRCEHNTQGADCNECLPFYNDRPWRSGTSVEANEC 344

Caenorhabditis elegans (taxid: 6239)
>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2 SV=2 Back     alignment and function description
>sp|A0JP86|LAMC1_XENTR Laminin subunit gamma-1 OS=Xenopus tropicalis GN=lamc1 PE=2 SV=1 Back     alignment and function description
>sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio GN=lamc1 PE=2 SV=2 Back     alignment and function description
>sp|P11047|LAMC1_HUMAN Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3 Back     alignment and function description
>sp|Q9R0B6|LAMC3_MOUSE Laminin subunit gamma-3 OS=Mus musculus GN=Lamc3 PE=2 SV=2 Back     alignment and function description
>sp|P02468|LAMC1_MOUSE Laminin subunit gamma-1 OS=Mus musculus GN=Lamc1 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens GN=LAMC3 PE=1 SV=3 Back     alignment and function description
>sp|Q90922|NET1_CHICK Netrin-1 OS=Gallus gallus GN=NTN1 PE=1 SV=1 Back     alignment and function description
>sp|O95631|NET1_HUMAN Netrin-1 OS=Homo sapiens GN=NTN1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
328717115 1631 PREDICTED: laminin subunit gamma-1-like 0.976 0.177 0.649 1e-111
91092436 1615 PREDICTED: similar to laminin gamma 1 ch 0.973 0.178 0.629 1e-105
270004765 1635 hypothetical protein TcasGA2_TC010540 [T 0.973 0.176 0.629 1e-105
383858273 1652 PREDICTED: LOW QUALITY PROTEIN: laminin 0.966 0.173 0.622 1e-101
350426806 1620 PREDICTED: laminin subunit gamma-1-like 0.966 0.177 0.622 1e-101
340716935 1620 PREDICTED: laminin subunit gamma-1-like 0.966 0.177 0.622 1e-101
380016777 1621 PREDICTED: LOW QUALITY PROTEIN: laminin 0.966 0.177 0.612 1e-100
307203704 1646 Laminin subunit gamma-1 [Harpegnathos sa 0.966 0.174 0.616 1e-100
157109051 1624 laminin gamma 1 chain [Aedes aegypti] gi 0.973 0.177 0.589 1e-100
156547421 1617 PREDICTED: laminin subunit gamma-1-like 0.969 0.178 0.602 4e-98
>gi|328717115|ref|XP_001944333.2| PREDICTED: laminin subunit gamma-1-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/297 (64%), Positives = 234/297 (78%), Gaps = 7/297 (2%)

Query: 4   RCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLT 63
           RCIP FENAAF   VE+TNTCG Q+G   PT FCVQSG+ VT  TCD C E +H   Y+T
Sbjct: 52  RCIPGFENAAFGLEVEATNTCG-QSG---PTEFCVQSGSQVTKKTCDVCTESSHSPYYMT 107

Query: 64  DLSN--TTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTY 121
           D S+    TWWQS TMY+ VQ+PNQVN+TL FGK FD+TY+RLLF+SPRPESFA+YKK+ 
Sbjct: 108 DFSSYANRTWWQSETMYESVQYPNQVNLTLHFGKAFDITYIRLLFYSPRPESFAMYKKST 167

Query: 122 ENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFATLEG 181
           E+  W P+QFYS SC++TYGLPD N  +  + +TR FCTSE+SD+SPLTGG+VPF+TLEG
Sbjct: 168 EDGPWIPYQFYSGSCRDTYGLPDLNYIRLGEQETRAFCTSEFSDISPLTGGSVPFSTLEG 227

Query: 182 RYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCK 241
           R  AK +       ++VTAT++RITLDRLNTF DE+F DP VL+SYFYAIAD +VGARCK
Sbjct: 228 RPSAKFYDTKSEFWDWVTATDVRITLDRLNTFGDEVFGDPQVLKSYFYAIADFAVGARCK 287

Query: 242 CNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRA-SDDANECR 297
           CNGHASEC      +G++RRVCRCEHNTAGPDCNEC PF+NDAPW RA + +A+EC+
Sbjct: 288 CNGHASECVKSTSINGTSRRVCRCEHNTAGPDCNECLPFFNDAPWSRATATNAHECK 344

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91092436|ref|XP_968632.1| PREDICTED: similar to laminin gamma 1 chain [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270004765|gb|EFA01213.1| hypothetical protein TcasGA2_TC010540 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383858273|ref|XP_003704626.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit gamma-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350426806|ref|XP_003494547.1| PREDICTED: laminin subunit gamma-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340716935|ref|XP_003396946.1| PREDICTED: laminin subunit gamma-1-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|380016777|ref|XP_003692349.1| PREDICTED: LOW QUALITY PROTEIN: laminin subunit gamma-1-like [Apis florea] Back     alignment and taxonomy information
>gi|307203704|gb|EFN82670.1| Laminin subunit gamma-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|157109051|ref|XP_001650503.1| laminin gamma 1 chain [Aedes aegypti] gi|108879155|gb|EAT43380.1| AAEL005187-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|156547421|ref|XP_001604560.1| PREDICTED: laminin subunit gamma-1-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
WB|WBGene00016913 1633 lam-2 [Caenorhabditis elegans 0.966 0.175 0.564 3.6e-88
FB|FBgn0002528 1639 LanB2 "Laminin B2" [Drosophila 0.969 0.175 0.546 7.1e-87
UNIPROTKB|F1MAA7 1607 Lamc1 "Protein Lamc1" [Rattus 0.956 0.176 0.53 9.3e-82
ZFIN|ZDB-GENE-021226-3 1593 lamc1 "laminin, gamma 1" [Dani 0.956 0.178 0.53 2.4e-81
UNIPROTKB|F1S663 1606 LAMC1 "Uncharacterized protein 0.956 0.176 0.526 6.7e-81
UNIPROTKB|F1MD77 1608 LAMC1 "Uncharacterized protein 0.959 0.177 0.524 8.6e-81
UNIPROTKB|P11047 1609 LAMC1 "Laminin subunit gamma-1 0.956 0.176 0.523 2.3e-80
MGI|MGI:1344394 1581 Lamc3 "laminin gamma 3" [Mus m 0.952 0.179 0.514 2.6e-79
MGI|MGI:99914 1607 Lamc1 "laminin, gamma 1" [Mus 0.952 0.176 0.528 2.7e-79
UNIPROTKB|F1NK49 1608 LAMC1 "Uncharacterized protein 0.952 0.175 0.528 6.7e-78
WB|WBGene00016913 lam-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 891 (318.7 bits), Expect = 3.6e-88, P = 3.6e-88
 Identities = 170/301 (56%), Positives = 210/301 (69%)

Query:     4 RCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHV----TANTCDYCYED-THP 58
             RC+P F NAAF+  V+ TNTCG +    +PT+FCVQSG H        TCD  +E  +HP
Sbjct:    50 RCVPDFVNAAFNLEVQVTNTCGTK----RPTKFCVQSG-HTGQRSVCETCDDRHEGFSHP 104

Query:    59 VRYLTDLS--NTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAI 116
              +YLTD +  N  TWWQS TM +G Q+P   N+TL  GK+FD+TYVRL F SPRPESF I
Sbjct:   105 AKYLTDFNVGNNETWWQSDTMQEGQQYPTTTNLTLVLGKSFDITYVRLKFISPRPESFTI 164

Query:   117 YKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPF 176
             YKKT+ +S W P+QFYS SC+ TYGL  D +     ++    CT E+SD+SP+TGG + F
Sbjct:   165 YKKTHTDSEWEPWQFYSGSCRATYGL-SDRAPILPGNEATAQCTKEFSDISPITGGNIAF 223

Query:   177 ATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISV 236
             +TLEGR  A  F  +  LQ++VTA+ IRI+L+R+NTF DE+F DP VLRSY+YAI+D +V
Sbjct:   224 STLEGRPSAHAFEESEVLQKWVTASAIRISLNRMNTFGDEVFKDPQVLRSYYYAISDFAV 283

Query:   237 GARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRASD-DANE 295
             G RCKCNGHASEC      DG  R VCRCEHNT G DCNEC PFYND PWR  +  +ANE
Sbjct:   284 GGRCKCNGHASECVGSSSVDGENRLVCRCEHNTQGADCNECLPFYNDRPWRSGTSVEANE 343

Query:   296 C 296
             C
Sbjct:   344 C 344
GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP
GO:0002119 "nematode larval development" evidence=IMP
GO:0008340 "determination of adult lifespan" evidence=IMP
GO:0040011 "locomotion" evidence=IMP
GO:0000003 "reproduction" evidence=IMP
GO:0010171 "body morphogenesis" evidence=IMP
GO:0040017 "positive regulation of locomotion" evidence=IMP
FB|FBgn0002528 LanB2 "Laminin B2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1MAA7 Lamc1 "Protein Lamc1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021226-3 lamc1 "laminin, gamma 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S663 LAMC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MD77 LAMC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P11047 LAMC1 "Laminin subunit gamma-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1344394 Lamc3 "laminin gamma 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:99914 Lamc1 "laminin, gamma 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK49 LAMC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P02468LAMC1_MOUSENo assigned EC number0.51010.94610.1748yesN/A
Q18823LAM2_CAEELNo assigned EC number0.56330.96960.1763yesN/A
P11047LAMC1_HUMANNo assigned EC number0.51660.95620.1765yesN/A
P15215LAMC1_DROMENo assigned EC number0.54200.97300.1763yesN/A
A0JP86LAMC1_XENTRNo assigned EC number0.52330.95620.1783yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
smart00136238 smart00136, LamNT, Laminin N-terminal domain (doma 4e-83
pfam00055237 pfam00055, Laminin_N, Laminin N-terminal (Domain V 1e-72
cd0005550 cd00055, EGF_Lam, Laminin-type epidermal growth fa 5e-09
pfam0005349 pfam00053, Laminin_EGF, Laminin EGF-like (Domains 2e-07
smart0018046 smart00180, EGF_Lam, Laminin-type epidermal growth 6e-05
>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI) Back     alignment and domain information 
 Score =  249 bits (639), Expect = 4e-83
 Identities = 109/242 (45%), Positives = 138/242 (57%), Gaps = 18/242 (7%)

Query: 4   RCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYC----YEDTHPV 59
            C PPF N AF   V +T+TCG     P P R+C   G       CDYC       +HP 
Sbjct: 6   SCYPPFVNLAFGREVTATSTCG----EPGPERYCKLVGHTEQGKKCDYCDARNPRRSHPA 61

Query: 60  RYLTDLSNT--TTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIY 117
             LTD +N    TWWQS  + +G Q    VN+TL  GK F VTYV L F SPRP S  I 
Sbjct: 62  ENLTDGNNPNNPTWWQSEPLSNGPQN---VNLTLDLGKEFHVTYVILKFCSPRP-SLWIL 117

Query: 118 KKTYENSSWTPFQFYSASCQETYGLPDDNS-GKANDSDTRVFCTSEYSDLSPLTGGAVPF 176
           +++    +W P+Q++S+ C+ T+G P      K N+ +  V CTSEYSD+ PL GG + F
Sbjct: 118 ERSDFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNEDE--VICTSEYSDIVPLEGGEIAF 175

Query: 177 ATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELF-LDPSVLRSYFYAIADIS 235
           + LEGR  A  F  +  LQE+VTAT IR+ L RL T  DEL    P V R Y+YAI+DI+
Sbjct: 176 SLLEGRPSATDFDNSPVLQEWVTATNIRVRLTRLRTLGDELMDDRPEVTRRYYYAISDIA 235

Query: 236 VG 237
           VG
Sbjct: 236 VG 237

N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins. Length = 238
>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI) Back     alignment and domain information
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies Back     alignment and domain information
>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V) Back     alignment and domain information
>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like domai Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 297
KOG3512|consensus 592 100.0
smart00136238 LamNT Laminin N-terminal domain (domain VI). N-ter 100.0
PF00055237 Laminin_N: Laminin N-terminal (Domain VI); InterPr 100.0
KOG0994|consensus 1758 100.0
KOG1836|consensus 1705 100.0
KOG0994|consensus 1758 98.8
cd0005550 EGF_Lam Laminin-type epidermal growth factor-like 98.35
KOG3512|consensus 592 98.29
PF0005349 Laminin_EGF: Laminin EGF-like (Domains III and V); 98.14
smart0018046 EGF_Lam Laminin-type epidermal growth factor-like 97.93
PF00754129 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000 97.37
KOG1836|consensus 1705 97.08
cd00057143 FA58C Substituted updates: Jan 31, 2002 96.67
PF0201212 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe 93.83
cd08366139 APC10 APC10 subunit of the anaphase-promoting comp 93.79
cd08667131 APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri 93.3
cd08666134 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H 92.96
cd08365131 APC10-like1 APC10-like DOC1 domains of E3 ubiquiti 92.7
KOG3437|consensus184 91.57
cd08159129 APC10-like APC10-like DOC1 domains in E3 ubiquitin 91.56
cd08665131 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit 90.95
PF03256193 APC10: Anaphase-promoting complex, subunit 10 (APC 90.69
KOG3509|consensus 964 88.12
KOG1388|consensus 217 86.16
COG5156189 DOC1 Anaphase-promoting complex (APC), subunit 10 84.62
cd08664152 APC10-HERC2 APC10-like DOC1 domain present in HERC 83.55
>KOG3512|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.5e-87  Score=633.83  Aligned_cols=281  Identities=44%  Similarity=0.793  Sum_probs=258.8

Q ss_pred             CCCcCCCCccccccCCeeEEeccccCCCCCCCCCcceeecCCccCCcccc-cccCCC----CCCceeccCCCC--ceeEe
Q psy15469          1 MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCD-YCYEDT----HPVRYLTDLSNT--TTWWQ   73 (297)
Q Consensus         1 ~~~~c~P~~~n~a~~~~~~a~sTCG~~~~~~~~e~yC~~~~~~~~~~~C~-~Cd~~~----Hp~~~~~D~~~~--~twWQ   73 (297)
                      .|.+|.|.|+|+|+|++|.|++|||.     +||.||.+.+..    .|. .|||++    |||++|+|.+++  .|+||
T Consensus        43 ~p~~C~P~~vnaa~g~~V~as~TCGd-----rPe~~c~~~~~~----~~~~eCdAs~p~~AHpPalltD~n~~~n~TcWq  113 (592)
T KOG3512|consen   43 EPRACQPEFVNAAFGKKVPASSTCGD-----RPETFCSVENPY----LCSNECDASNPDLAHPPALLTDLNGPGNATCWQ  113 (592)
T ss_pred             CeeecChhhhhhhhCCccCCccccCC-----CccceeeecCCC----cccccccCCCccccCChHHhcCCCCCCCcceee
Confidence            47899999999999999999999995     999999998654    353 667763    999999998866  99999


Q ss_pred             ccccCCCCCCCCeeeEEEecCceEEEEEEEEEEeCCCCCcEEEEEecCCCCCCeechhhHhhhhhhcCC-CCCCCCCCCC
Q psy15469         74 STTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGL-PDDNSGKAND  152 (297)
Q Consensus        74 S~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~sprP~sm~ieks~d~G~tW~p~qyfa~~C~~~f~~-~~~~~~~~~~  152 (297)
                      |++|+. .+.|.+|||||+|+|.||||||+|+|+|+||++|+||||+|+|+||+||||||++|++.||| +....+... 
T Consensus       114 S~tw~~-~~~PlnVtlTLSlgKkfELT~Vsl~FcS~rPdsmaL~KS~D~GrTWqPfQFYss~C~~~fgr~~~~a~isk~-  191 (592)
T KOG3512|consen  114 SETWSR-YPSPLNVTLTLSLGKKFELTYVSLTFCSGRPDSMALEKSLDYGRTWQPFQFYSSDCRKAFGRSPRRADISKS-  191 (592)
T ss_pred             ccccCC-CCCCceEEEEEecCcEEEEEEEEEEEecCCCceeeeeeccccCCcccccchhHHHHHHHhCCCCcccccccC-
Confidence            999875 47789999999999999999999999999999999999999999999999999999999999 666667665 


Q ss_pred             CCCceeeecCCCCCCCCCCCceeEEecCCCCCcCCCCCcHhhHhhhhcceeEEEEeecccCcccccCCccccceeeeeee
Q psy15469        153 SDTRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIA  232 (297)
Q Consensus       153 ~~~~v~Ct~~ys~~~p~~~g~V~f~~l~~rp~~~~~~~s~~lqd~~tat~iRi~l~~~~~~~~~~~~~~~~~~~~yYai~  232 (297)
                      +++|++||++|+...+..++.|+|..|++||++.++++|++||||||||||||+|+|++++|++. .|...+.+|||||+
T Consensus       192 n~~Ea~Ct~s~~~~~~~~~~~~af~~l~~Rps~~dldss~vLqDwvTaTDiRvvl~Rp~s~G~~~-dde~~l~rYfYAis  270 (592)
T KOG3512|consen  192 NEQEALCTESYSDGAGSGGGKIAFFELEDRPSAFDLDSSPVLQDWVTATDIRVVLLRPASLGEEY-DDEANLARYFYAIS  270 (592)
T ss_pred             CccceeeccccccCCCCCCceEEeeeecCCccccccccchhhhhheeeeeeEEEEechhhcCCcc-hhhhhhhhhheecc
Confidence            89999999999999999999999999999999999999999999999999999999999988754 46667788999999


Q ss_pred             ceeecccccCCCCCCCCCCcccCCCCcceEecCCCCCCCCCCCcCCccCCCCCCCCCC-CCCCCCC
Q psy15469        233 DISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRAS-DDANECR  297 (297)
Q Consensus       233 ~i~v~g~C~CnGHA~~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~p~y~~~Pw~~a~-~~~n~C~  297 (297)
                      ||.|+|||+|||||++|+++    .+++++|+|+|||+|+.|++|+|+|+++||++|+ ..+|+|+
T Consensus       271 dl~VgGRCKCNgHAs~Cv~d----~~~~ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~  332 (592)
T KOG3512|consen  271 DLAVGGRCKCNGHASRCVMD----ESSHLTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECV  332 (592)
T ss_pred             cceeeeeeeecCccceeeec----cCCceEEecccCCCCCCcccccccccCCCccccccCCCcccc
Confidence            99999999999999999975    3567999999999999999999999999999999 9999884

>smart00136 LamNT Laminin N-terminal domain (domain VI) Back     alignment and domain information
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies Back     alignment and domain information
>KOG3512|consensus Back     alignment and domain information
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation Back     alignment and domain information
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai Back     alignment and domain information
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information
>cd00057 FA58C Substituted updates: Jan 31, 2002 Back     alignment and domain information
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes Back     alignment and domain information
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination Back     alignment and domain information
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs Back     alignment and domain information
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination Back     alignment and domain information
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>KOG3437|consensus Back     alignment and domain information
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination Back     alignment and domain information
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase Back     alignment and domain information
>KOG3509|consensus Back     alignment and domain information
>KOG1388|consensus Back     alignment and domain information
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
4aqt_A375 Laminin Gamma1 Ln-Le1-2 Structure Length = 375 4e-83
2y38_A403 Laminin Alpha5 Chain N-Terminal Fragment Length = 4 3e-44
3zyj_B426 Netring1 In Complex With Ngl1 Length = 426 6e-31
3tbd_A338 Crystal Structure Of Domain Vi And Le1 Of Human Net 1e-28
3zyg_A353 Netring2 Lam And Egf1 Domains Length = 353 1e-28
4aqs_A 525 Laminin Beta1 Ln-Le1-4 Structure Length = 525 1e-27
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  304 bits (778), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 154/300 (51%), Positives = 200/300 (66%), Gaps = 16/300 (5%)
Query: 4   RCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYC----YEDTHPV 59
           RC+P F NAAF+ +V +TNTCG       P  +CVQ+G      +C  C        H  
Sbjct: 18  RCMPEFVNAAFNVTVVATNTCG-----TPPEEYCVQTGVTGVTKSCHLCDAGQQHLQHGA 72
Query: 60  RYLTDLSNT--TTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIY 117
            +LTD +N   TTWWQS TM  GVQ+PN +N+TL  GK FD+TYVRL F + RPESFAIY
Sbjct: 73  AFLTDYNNQADTTWWQSQTMLAGVQYPNSINLTLHLGKAFDITYVRLKFHTSRPESFAIY 132
Query: 118 KKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFA 177
           K+T E+  W P+Q+YS SC+ TY   +    +    + +  CT E+SD+SPLTGG V F+
Sbjct: 133 KRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFS 192
Query: 178 TLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVG 237
           TLEGR  A  F  +  LQE+VTAT+IR+TL+RLNTF DE+F +P VL+SY+YAI+D +VG
Sbjct: 193 TLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVG 252
Query: 238 ARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRA-SDDANEC 296
            RCKCNGHASEC      +   + +C C+HNT G DC +C PF+ND PWRRA ++ A+EC
Sbjct: 253 GRCKCNGHASEC----VKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASEC 308
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment Length = 403 Back     alignment and structure
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1 Length = 426 Back     alignment and structure
>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2 Length = 338 Back     alignment and structure
>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains Length = 353 Back     alignment and structure
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure Length = 525 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 4e-82
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 5e-06
4aqs_A 525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 8e-73
4aqs_A 525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 1e-05
2y38_A403 Laminin subunit alpha-5; structural protein, cell 1e-72
3zyj_B426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 1e-64
3tbd_A338 Netrin-G2, laminet-2; laminin N-terminal domain, d 2e-63
1klo_A 162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 2e-09
1klo_A162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 2e-05
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375 Back     alignment and structure
 Score =  251 bits (642), Expect = 4e-82
 Identities = 154/301 (51%), Positives = 200/301 (66%), Gaps = 16/301 (5%)

Query: 4   RCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCY----EDTHPV 59
           RC+P F NAAF+ +V +TNTCG       P  +CVQ+G      +C  C        H  
Sbjct: 18  RCMPEFVNAAFNVTVVATNTCGTP-----PEEYCVQTGVTGVTKSCHLCDAGQQHLQHGA 72

Query: 60  RYLTDLSNT--TTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIY 117
            +LTD +N   TTWWQS TM  GVQ+PN +N+TL  GK FD+TYVRL F + RPESFAIY
Sbjct: 73  AFLTDYNNQADTTWWQSQTMLAGVQYPNSINLTLHLGKAFDITYVRLKFHTSRPESFAIY 132

Query: 118 KKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFA 177
           K+T E+  W P+Q+YS SC+ TY   +    +    + +  CT E+SD+SPLTGG V F+
Sbjct: 133 KRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFS 192

Query: 178 TLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVG 237
           TLEGR  A  F  +  LQE+VTAT+IR+TL+RLNTF DE+F +P VL+SY+YAI+D +VG
Sbjct: 193 TLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVG 252

Query: 238 ARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRA-SDDANEC 296
            RCKCNGHASEC      +   + +C C+HNT G DC +C PF+ND PWRRA ++ A+EC
Sbjct: 253 GRCKCNGHASECVK----NEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASEC 308

Query: 297 R 297
            
Sbjct: 309 L 309
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375 Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403 Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426 Back     alignment and structure
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Length = 338 Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162 Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 100.0
2y38_A403 Laminin subunit alpha-5; structural protein, cell 100.0
3tbd_A338 Netrin-G2, laminet-2; laminin N-terminal domain, d 100.0
3zyj_B426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 100.0
4aqs_A 525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 100.0
4a3z_A161 GH89_CBM32, alpha-N-acetylglucosaminidase family p 98.53
2y38_A403 Laminin subunit alpha-5; structural protein, cell 98.51
3lei_A153 Platelet aggregation factor SM-HPAF; lectin domain 97.87
4gwi_A153 Lectinolysin, platelet aggregation factor SM-HPAF; 97.73
3eyp_A469 Putative alpha-L-fucosidase; structural genomics, 97.65
4a42_A149 GH89_CBM32-4, alpha-N-acetylglucosaminidase family 97.62
4a4a_A 914 Alpha-N-acetylglucosaminidase family protein; hydr 97.55
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 97.49
3f2z_A159 Uncharacterized protein BF3579; the present C-term 97.48
2yc2_A139 IFT25, intraflagellar transport protein 25; transp 97.44
2jda_A145 Yecbm32; hypothetical protein, carbohydrate- bindi 97.43
4a41_A161 GH89_CBM32-5, alpha-N-acetylglucosaminidase family 97.43
1klo_A 162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 97.37
3hnm_A172 Putative chitobiase; PSI-2, protein structure init 97.29
3ggl_A169 Putative chitobiase; X-RAY, structure genomics, NE 97.23
1tvg_A153 LOC51668 protein; cell cycle, structural genomics, 97.22
2j1a_A150 Hyaluronidase, CBM32; protein-carbohydrate interac 97.2
1k12_A158 Lectin; beta barrel, protein carbohydrate complex, 97.02
2j1v_A151 Fucolectin-related protein; carbohydrate-binding p 96.94
1klo_A162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 96.74
3cqo_A293 FBP32; F-lectin, fucolectin, sugar binding protein 96.67
2j22_A148 Fucolectin-related protein; carbohydrate-binding p 96.34
3cqo_A293 FBP32; F-lectin, fucolectin, sugar binding protein 96.29
1w8o_A601 Bacterial sialidase; 3D-structure, glycosidase, hy 95.6
2v72_A143 CBM32, EXO-alpha-sialidase; galactose, bacterial p 95.24
3ues_A478 Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr 94.75
2v5d_A737 O-GLCNACASE NAGJ; family 32 carbohydrate binding m 94.54
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 94.4
3bn6_A158 Lactadherin; anticoagulation, anti-coagulation, an 94.36
2w1s_A192 Hyaluronoglucosaminidase; hexosaminidase, family 3 93.19
1jhj_A171 APC10; beta sandwich, jellyroll, cell cycle; 1.60A 93.09
1czt_A160 Protein (coagulation factor V); membrane-binding, 92.59
4aqs_A 525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 91.5
2qqi_A318 Neuropilin-1; VEGF receptor, semaphorin receptor, 91.11
1gqp_A221 DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, 90.04
2zxq_A1376 Endo-alpha-N-acetylgalactosaminidase; broken TIM b 89.24
2cho_A716 Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro 88.71
2wuh_A178 Discoidin domain receptor 2; receptor-peptide comp 88.55
2qqi_A318 Neuropilin-1; VEGF receptor, semaphorin receptor, 88.51
4deq_A218 Neuropilin-1, vascular endothelial growth factor; 87.87
2qqj_A325 Neuropilin-2; VEGF receptor, semaphorin receptor, 87.48
2qqm_A450 Neuropilin-1; VEGF receptor, semaphorin receptor, 86.02
2vm9_A257 Discoidin-2, discoidin II; DDR, lectin, aggregatio 85.98
2qqk_A579 Neuropilin-2; VEGF receptor, semaphorin receptor, 81.68
2qqj_A325 Neuropilin-2; VEGF receptor, semaphorin receptor, 81.33
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=2.2e-91  Score=671.38  Aligned_cols=288  Identities=53%  Similarity=1.023  Sum_probs=267.9

Q ss_pred             CCCcCCCCccccccCCeeEEeccccCCCCCCCCCcceeecCCccCCcccccccCCC----CCCceeccCCCC--ceeEec
Q psy15469          1 MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDT----HPVRYLTDLSNT--TTWWQS   74 (297)
Q Consensus         1 ~~~~c~P~~~n~a~~~~~~a~sTCG~~~~~~~~e~yC~~~~~~~~~~~C~~Cd~~~----Hp~~~~~D~~~~--~twWQS   74 (297)
                      +||+|+|+|+|||+||+|+||||||+     +||+||++++..+..++|++||+++    ||+++|+|+++.  .|||||
T Consensus        15 ~p~~C~P~~~N~a~~~~i~assTCG~-----~pe~yC~~~~~~~~~~~C~~Cda~~p~~~Hp~~~~~D~~~~~~~TwWQS   89 (375)
T 4aqt_A           15 RPQRCMPEFVNAAFNVTVVATNTCGT-----PPEEYCVQTGVTGVTKSCHLCDAGQQHLQHGAAFLTDYNNQADTTWWQS   89 (375)
T ss_dssp             CBCCCCCCCEETTTTCCCEESCCTTS-----SCEEEECCC----CCCCEEEECSSSTTTCCCGGGGSSCCCSSSCCCEEC
T ss_pred             CcCccCCchhhhccCCeeeEecCCCC-----CCcCeEEecCCcccCCcCCccCCCChhhhCCHhheeccCCCCCCceEEC
Confidence            58999999999999999999999996     8999999998776678899999984    999999997643  899999


Q ss_pred             cccCCCCCCCCeeeEEEecCceEEEEEEEEEEeCCCCCcEEEEEecCCCCCCeechhhHhhhhhhcCCCCCCCCCCCCCC
Q psy15469         75 TTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSD  154 (297)
Q Consensus        75 ~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~sprP~sm~ieks~d~G~tW~p~qyfa~~C~~~f~~~~~~~~~~~~~~  154 (297)
                      +++++|.++|++|||||||+++|||+||+|+|+++||++|+||||+|+|+||+||||||.||.+.|+|++++.+....++
T Consensus        90 ~~~~~~~~~~~~VtitLdL~~~f~~t~v~i~F~~~rP~~m~Iers~d~G~tw~p~qyfa~~C~~~f~~~~~~~~~~~~~~  169 (375)
T 4aqt_A           90 QTMLAGVQYPNSINLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDE  169 (375)
T ss_dssp             CCGGGTCSSSCCEEEEEEEEEEEEEEEEEEEESSSCCSEEEEEEESSSSSCCEEEEEEETTHHHHHSCCTTCCCCTTSCT
T ss_pred             CCccccCCCCcceEEEEcCCCeEEEEEEEEEecCCCCCcEEEEEecCCCCCccceeeeecchhHhcCCCCCCCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998877655578


Q ss_pred             CceeeecCCCCCCCCCCCceeEEecCCCCCcCCCCCcHhhHhhhhcceeEEEEeecccCcccccCCccccceeeeeeece
Q psy15469        155 TRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADI  234 (297)
Q Consensus       155 ~~v~Ct~~ys~~~p~~~g~V~f~~l~~rp~~~~~~~s~~lqd~~tat~iRi~l~~~~~~~~~~~~~~~~~~~~yYai~~i  234 (297)
                      ++||||++||++.|+++|+|+|++|+|||++.+|++|++||||++||||||+|+|+++++++++.++.++++|||||+||
T Consensus       170 ~~viCt~~ys~~~p~~~g~v~~~~l~~rp~~~~~~~s~~lq~~~~at~iRi~l~~~~~~~~~~~~~~~~~~~yyYai~di  249 (375)
T 4aqt_A          170 QQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISDF  249 (375)
T ss_dssp             TCCEEESTTCSCCSSSCEEEEEETTTTCTTGGGGGGCHHHHHHTEEEEEEEEEEECCCCSGGGSCCHHHHTTCCCEEEEE
T ss_pred             CeeEeCCcCCCCcCCcCCeEEEEeccCCCCcccCCcCHHHhhhhhheeeeeeecccccCcccccccccccccceeeeccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccCCCCCCCCCCcccCCCCcceEecCCCCCCCCCCCcCCccCCCCCCCCCC-CCCCCCC
Q psy15469        235 SVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRAS-DDANECR  297 (297)
Q Consensus       235 ~v~g~C~CnGHA~~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~p~y~~~Pw~~a~-~~~n~C~  297 (297)
                      .|+|+|.||||++.|...    ....+.|.|+|||+|.+|++|+++|++.||++|+ ..++.|+
T Consensus       250 ~v~g~C~Cngh~s~c~~~----~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~  309 (375)
T 4aqt_A          250 AVGGRCKCNGHASECVKN----EFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECL  309 (375)
T ss_dssp             EEEEEECCTTSCSCEEEC----TTSCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCC
T ss_pred             ccCceecCCCCCcccCCC----CCCCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCC
Confidence            999999999999999743    3456788999999999999999999999999999 8888874
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Back     alignment and structure
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Back     alignment and structure
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A* Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Back     alignment and structure
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens} Back     alignment and structure
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Back     alignment and structure
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Back     alignment and structure
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A Back     alignment and structure
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A Back     alignment and structure
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A Back     alignment and structure
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A* Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Back     alignment and structure
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A Back     alignment and structure
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A* Back     alignment and structure
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15 Back     alignment and structure
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A* Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae} Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens} Back     alignment and structure
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* Back     alignment and structure
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A Back     alignment and structure
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A* Back     alignment and structure
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 Back     alignment and structure
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Back     alignment and structure
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Back     alignment and structure
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 Back     alignment and structure
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} Back     alignment and structure
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A* Back     alignment and structure
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A Back     alignment and structure
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Back     alignment and structure
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A Back     alignment and structure
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} Back     alignment and structure
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Back     alignment and structure
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A* Back     alignment and structure
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Back     alignment and structure
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 297
d1kloa155 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mu 1e-06
d1kloa256 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (M 1e-06
d1gqpa_194 b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-p 0.002
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 55 Back     information, alignment and structure

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 14/58 (24%), Positives = 16/58 (27%), Gaps = 4/58 (6%)

Query: 240 CKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRASDDANECR 297
           C C G +S                 C   TAG  C  C   Y   P    +     CR
Sbjct: 1   CPCPGGSSCA---IVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGS-NGPVRLCR 54
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 Back     information, alignment and structure
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
d1kloa256 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 98.56
d1kloa155 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 98.39
d1gqpa_194 APC10/DOC1 subunit of the anaphase-promoting compl 97.98
d1jhja_161 APC10/DOC1 subunit of the anaphase-promoting compl 97.58
d1w8oa2142 Sialidase, C-terminal domain {Micromonospora virid 97.49
d1tvga_136 Placental protein 25, pp25 {Human (Homo sapiens) [ 97.47
d1kloa351 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 97.3
d1k3ia2162 Galactose oxidase, N-terminal domain {Fungi (Fusar 97.22
d1k12a_158 Fucose binding lectin {European eel (Anguilla angu 97.13
d2qqia1156 C2 domain of factor VIII {Human (Homo sapiens) [Ta 88.63
d2qqia2155 B1 domain of neuropilin-1 {Human (Homo sapiens) [T 81.96
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=7.1e-09  Score=71.42  Aligned_cols=47  Identities=26%  Similarity=0.511  Sum_probs=35.5

Q ss_pred             ccCCCCCCCCCCcccCCCCcceEe-cCCCCCCCCCCCcCCccCCCCCCCC
Q psy15469        240 CKCNGHASECPYVRQSDGSTRRVC-RCEHNTAGPDCNECAPFYNDAPWRR  288 (297)
Q Consensus       240 C~CnGHA~~C~~~~~~~~~~~~~C-~C~HnT~G~~Ce~C~p~y~~~Pw~~  288 (297)
                      |.||+|++......  -...+|+| .|+|||+|.+|++|+++|++.|..+
T Consensus         1 C~Cn~~~~~~~~~~--Cd~~tG~C~~C~~nt~G~~Cd~C~~G~yg~~~~~   48 (56)
T d1kloa2           1 CQCNDNIDPNAVGN--CNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAP   48 (56)
T ss_dssp             CCSTTCBCTTCSCC--BCTTTCCBCCBCTTEETTTTCEECTTEEECTTCS
T ss_pred             CcCCCCCCCcccCc--cCCCCCCCCCCCCCCCCCCcCcccCCcccCCCCC
Confidence            78999987543211  12346899 5999999999999999999876543
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]} Back     information, alignment and structure
>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure