Psyllid ID: psy15473

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MFRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSPGAQ
Secondary Structure (PSIPRED)
ccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHccccccccccccccccccccccccccccccccccccccEEEccccccccccccccc
Coil and Loop (DISEMBL)
mfrrcicqdntggdncercargyygnalegavtdckqcpcpnqgpcvqldddqvsnlgnrtRIRIKsalggnrtrglaLTRQTHYQltgyhheptsggafsrcvpcncnghadicdaesgrcicqdntggdncercargyygnalegavtdckqcpcpnqgpcvqldddqvvcsecprgyggekmspgaq
Flexible Loop (DISEMBL)
mfrrcicqdntggdncercARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRtririksalggnrtrglALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPrgyggekmspgaq
Low Complexity Region (SEG)
MFRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSPGAQ
Disordered region (IsUnstruct)
***RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSEC**************
Disordered Region (DISOPRED)
MFRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSPGA*
Disordered Region (DISEMBL)
MFRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGY**********
Disordered Region (DISPRO)
MFRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSPG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSPGAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
P15215	1639	Laminin subunit gamma-1 O	yes	N/A	0.389	0.045	0.625	1e-33
Q18823	1633	Laminin-like protein lam-	yes	N/A	0.384	0.044	0.546	4e-28
A0JP86	1592	Laminin subunit gamma-1 O	yes	N/A	0.505	0.060	0.505	6e-20
P02468	1607	Laminin subunit gamma-1 O	yes	N/A	0.515	0.060	0.464	2e-19
P11047	1609	Laminin subunit gamma-1 O	yes	N/A	0.515	0.060	0.464	6e-19
Q1LVF0	1593	Laminin subunit gamma-1 O	yes	N/A	0.447	0.053	0.511	1e-17
Q9Y6N6	1575	Laminin subunit gamma-3 O	no	N/A	0.5	0.060	0.443	3e-17
Q9R0B6	1581	Laminin subunit gamma-3 O	no	N/A	0.5	0.060	0.443	6e-17
P19137	3084	Laminin subunit alpha-1 O	no	N/A	0.494	0.030	0.449	2e-15
P24043	3122	Laminin subunit alpha-2 O	no	N/A	0.489	0.029	0.476	6e-15

>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2 SV=2

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 78/96 (81%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY H P  GG F  C+PC+C+GHADICD+E+GRCICQ NT GDNC++CA+G+YGNAL G 
Sbjct: 727 GYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQCAKGFYGNALGGT 786

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
             DCK+CPCPN G C+Q+++D V+C+ECP+GY G +
Sbjct: 787 PNDCKRCPCPNDGACLQINEDTVICTECPKGYFGSR 822

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
Drosophila melanogaster (taxid: 7227)

>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis elegans GN=lam-2 PE=1 SV=3

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 71/97 (73%)

Query: 88  TGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEG 147
           +G+  E   GG F+ C+ C+C+ H++ C+AESG CIC+ NT GD CERCARGYYG+AL+G
Sbjct: 718 SGFRRETKFGGPFNHCIKCDCHNHSNSCEAESGSCICEHNTAGDTCERCARGYYGDALQG 777

Query: 148 AVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
              DC++CPCPN GPC+   D  V+C+ECP GY G +
Sbjct: 778 TEEDCQKCPCPNDGPCILHADGDVICTECPNGYTGRR 814

Caenorhabditis elegans (taxid: 6239)

>sp|A0JP86|LAMC1_XENTR Laminin subunit gamma-1 OS=Xenopus tropicalis GN=lamc1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 62/97 (63%), Gaps = 1/97 (1%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY  E  S G +S CV C CNGH+D CD ESG C CQ NT G +CERC+ GYYG++  G+
Sbjct: 690 GYRRENPSQGPYSPCVLCTCNGHSDTCDPESGVCDCQHNTAGPHCERCSEGYYGDSTTGS 749

Query: 149 VTDCKQCPCPNQGPC-VQLDDDQVVCSECPRGYGGEK 184
            +DC+ CPCP    C V     +VVC+ CP G  G++
Sbjct: 750 ASDCQPCPCPGGSSCAVVPRTKEVVCTNCPLGTTGKR 786

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Xenopus tropicalis (taxid: 8364)

>sp|P02468|LAMC1_MOUSE Laminin subunit gamma-1 OS=Mus musculus GN=Lamc1 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 1/99 (1%)

Query: 87  LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE 146
           L GY  E  S G +S CV C CNGH++ CD E+G C C+DNT G +CE+C+ GYYG++  
Sbjct: 703 LPGYRRETPSLGPYSPCVLCTCNGHSETCDPETGVCDCRDNTAGPHCEKCSDGYYGDSTL 762

Query: 147 GAVTDCKQCPCPNQGPCVQL-DDDQVVCSECPRGYGGEK 184
           G  +DC+ CPCP    C  +    +VVC+ CP G  G++
Sbjct: 763 GTSSDCQPCPCPGGSSCAIVPKTKEVVCTHCPTGTAGKR 801

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Mus musculus (taxid: 10090)

>sp|P11047|LAMC1_HUMAN Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3

 Score = 94.0 bits (232), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)

Query: 87  LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE 146
           L+GY  E  + G +S CV C CNGH++ CD E+G C C+DNT G +CE+C+ GYYG++  
Sbjct: 705 LSGYRRETPNLGPYSPCVLCACNGHSETCDPETGVCNCRDNTAGPHCEKCSDGYYGDSTA 764

Query: 147 GAVTDCKQCPCPNQGPC-VQLDDDQVVCSECPRGYGGEK 184
           G  +DC+ CPCP    C V     +VVC+ CP G  G++
Sbjct: 765 GTSSDCQPCPCPGGSSCAVVPKTKEVVCTNCPTGTTGKR 803

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Homo sapiens (taxid: 9606)

>sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio GN=lamc1 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 100 FSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPN 159
           FS C  CNCNGH+D CD E+G C CQ NT G +CERC  G+YG++  G+ +DCK CPCP 
Sbjct: 702 FSTCERCNCNGHSDTCDPETGMCNCQHNTAGLSCERCKDGFYGDSTVGSSSDCKACPCPA 761

Query: 160 QGPC-VQLDDDQVVCSECPRGYGGEK 184
              C V    ++VVC+ CP G  G++
Sbjct: 762 GATCAVVPKTNEVVCTNCPTGTTGKR 787

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Danio rerio (taxid: 7955)

>sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens GN=LAMC3 PE=1 SV=3

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY  E   GG ++ CVPC CN H   CD  +G C+C  +T G +CERC  G+YGN   G 
Sbjct: 690 GYKREMPQGGPYASCVPCTCNQHG-TCDPNTGICVCSHHTEGPSCERCLPGFYGNPFAGQ 748

Query: 149 VTDCKQCPCPNQGPCVQLDDD-QVVCSECPRGYGGEK 184
             DC+ CPCP Q  C  + +  +VVC+ CP G  G +
Sbjct: 749 ADDCQPCPCPGQSACTTIPESREVVCTHCPPGQRGRR 785

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Homo sapiens (taxid: 9606)

>sp|Q9R0B6|LAMC3_MOUSE Laminin subunit gamma-3 OS=Mus musculus GN=Lamc3 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY  E   GG ++ C+PC CN H   CD  +G C+C  +T G +CERC  G+YGNA  G 
Sbjct: 702 GYKREIPHGGPYANCIPCTCNQHG-TCDPNTGICLCGHHTEGPSCERCMPGFYGNAFSGR 760

Query: 149 VTDCKQCPCPNQGPCVQLDDD-QVVCSECPRGYGGEK 184
             DC+ CPCP Q  C  + +   VVC+ CP G  G +
Sbjct: 761 ADDCQPCPCPGQSACATIPESGDVVCTHCPPGQRGRR 797

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Mus musculus (taxid: 10090)

>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/109 (44%), Positives = 63/109 (57%), Gaps = 15/109 (13%)

Query: 89   GYHHE--PTSGG-----AFSRCVPCNCNGHADICDAESGRCI-CQDNTGGDNCERCARGY 140
            GY+ E  P SGG       + CVPCNCN H+D+CD E+G+C+ C+D+T GD+CE CA GY
Sbjct: 1386 GYYREKLPESGGRGPRPLLAPCVPCNCNNHSDVCDPETGKCLSCRDHTSGDHCELCASGY 1445

Query: 141  YGNALEGAVTDCKQCPCPNQGP------CVQLDDDQVVCSECPRGYGGE 183
            YG  + G   DC  C CP+  P      CV   D    C+ C  GY G+
Sbjct: 1446 YGK-VTGLPGDCTPCTCPHHPPFSFSPTCVVEGDSDFRCNACLPGYEGQ 1493

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Mus musculus (taxid: 10090)

>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4

 Score = 80.5 bits (197), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 60/105 (57%), Gaps = 12/105 (11%)

Query: 95   TSGGAFSRCVPCNCNGHADICDAESGRCI-CQDNTGGDNCERCARGYYGNALEGAVTDCK 153
            T G     CVPC CNGH+ +CD E+  C  CQ +T GD CERCA GYYG  ++G   DC+
Sbjct: 1409 TPGPTLGTCVPCQCNGHSSLCDPETSICQNCQHHTAGDFCERCALGYYG-IVKGLPNDCQ 1467

Query: 154  QCPCP------NQGP-CVQLDDDQVVCSECPRGYGG---EKMSPG 188
            QC CP      N  P CV    D   C+ CPRGY G   E+ +PG
Sbjct: 1468 QCACPLISSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPG 1512

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
321466184	1626	hypothetical protein DAPPUDRAFT_321711 [	0.226	0.026	0.718	1e-35
328717117	1319	PREDICTED: laminin subunit gamma-1-like	0.378	0.054	0.702	2e-34
328717115	1631	PREDICTED: laminin subunit gamma-1-like	0.378	0.044	0.702	2e-34
194868030	1639	laminin B2 [Drosophila erecta] gi|190653	0.389	0.045	0.625	3e-32
195326389	1639	LanB2 [Drosophila sechellia] gi|19411885	0.389	0.045	0.625	5e-32
195490762	1639	laminin B2 [Drosophila yakuba] gi|194179	0.389	0.045	0.625	6e-32
17737557	1639	laminin B2 [Drosophila melanogaster] gi|	0.389	0.045	0.625	6e-32
157804	1639	laminin B2 chain [Drosophila melanogaste	0.389	0.045	0.625	6e-32
226113	1296	laminin B2	0.389	0.057	0.625	6e-32
195428901	1645	GK16620 [Drosophila willistoni] gi|19415	0.389	0.044	0.635	3e-31

>gi|321466184|gb|EFX77181.1| hypothetical protein DAPPUDRAFT_321711 [Daphnia pulex]

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 79/96 (82%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           G+ HEP +GG F+RCVPCNCNGHADICDAESGRCICQ NT GDNCERCARG+YGNAL+G+
Sbjct: 715 GFRHEPANGGPFARCVPCNCNGHADICDAESGRCICQHNTAGDNCERCARGFYGNALQGS 774

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
             DC  CPCPN G C++L D+ VVC ECP GY G +
Sbjct: 775 PNDCNPCPCPNGGACIELADETVVCLECPVGYAGPR 810

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717117|ref|XP_003246126.1| PREDICTED: laminin subunit gamma-1-like isoform 2 [Acyrthosiphon pisum]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 78/94 (82%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           G  HEPTSGG FS CVPCNC+GHA ICDA++GRCICQ NT G+NC+RCA+GYYGNA++G 
Sbjct: 404 GSRHEPTSGGPFSPCVPCNCHGHASICDADTGRCICQHNTAGENCDRCAKGYYGNAMQGT 463

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGG 182
             DCK CPCPNQG CV + +D V+C ECP+GYGG
Sbjct: 464 ALDCKLCPCPNQGSCVLIGEDTVICLECPKGYGG 497

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717115|ref|XP_001944333.2| PREDICTED: laminin subunit gamma-1-like isoform 3 [Acyrthosiphon pisum]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/94 (70%), Positives = 78/94 (82%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           G  HEPTSGG FS CVPCNC+GHA ICDA++GRCICQ NT G+NC+RCA+GYYGNA++G 
Sbjct: 716 GSRHEPTSGGPFSPCVPCNCHGHASICDADTGRCICQHNTAGENCDRCAKGYYGNAMQGT 775

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGG 182
             DCK CPCPNQG CV + +D V+C ECP+GYGG
Sbjct: 776 ALDCKLCPCPNQGSCVLIGEDTVICLECPKGYGG 809

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194868030|ref|XP_001972200.1| laminin B2 [Drosophila erecta] gi|190653983|gb|EDV51226.1| laminin B2 [Drosophila erecta]

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY H P  GG F  C+PC+C+GHADICD+E+GRCICQ NT GDNC++CA+G+YGNAL G 
Sbjct: 727 GYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQCAKGFYGNALGGT 786

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
            +DCK+CPCPN G C+Q+++D V+C+ECP+GY G +
Sbjct: 787 PSDCKRCPCPNDGACLQINEDTVICTECPKGYFGSR 822

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326389|ref|XP_002029911.1| LanB2 [Drosophila sechellia] gi|194118854|gb|EDW40897.1| LanB2 [Drosophila sechellia]

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 78/96 (81%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY H P  GG F  C+PC+C+GHADICD+E+GRCICQ NT GDNC++CA+G+YGNAL G 
Sbjct: 727 GYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQCAKGFYGNALGGT 786

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
             DCK+CPCPN G C+Q+++D V+C+ECP+GY G +
Sbjct: 787 PNDCKRCPCPNDGACLQINEDTVICTECPKGYFGSR 822

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490762|ref|XP_002093277.1| laminin B2 [Drosophila yakuba] gi|194179378|gb|EDW92989.1| laminin B2 [Drosophila yakuba]

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 78/96 (81%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY H P  GG F  C+PC+C+GHADICD+E+GRCICQ NT GDNC++CA+G+YGNAL G 
Sbjct: 727 GYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQCAKGFYGNALGGT 786

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
             DCK+CPCPN G C+Q+++D V+C+ECP+GY G +
Sbjct: 787 PNDCKRCPCPNDGACLQINEDTVICTECPKGYFGSR 822

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17737557|ref|NP_524006.1| laminin B2 [Drosophila melanogaster] gi|2506807|sp|P15215.2|LAMC1_DROME RecName: Full=Laminin subunit gamma-1; AltName: Full=Laminin B2 chain; Flags: Precursor gi|157806|gb|AAA28665.1| laminin B2 chain [Drosophila melanogaster] gi|7294908|gb|AAF50238.1| laminin B2 [Drosophila melanogaster] gi|60678071|gb|AAX33542.1| LD15803p [Drosophila melanogaster]

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 78/96 (81%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY H P  GG F  C+PC+C+GHADICD+E+GRCICQ NT GDNC++CA+G+YGNAL G 
Sbjct: 727 GYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQCAKGFYGNALGGT 786

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
             DCK+CPCPN G C+Q+++D V+C+ECP+GY G +
Sbjct: 787 PNDCKRCPCPNDGACLQINEDTVICTECPKGYFGSR 822

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157804|gb|AAA28664.1| laminin B2 chain [Drosophila melanogaster]

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 78/96 (81%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY H P  GG F  C+PC+C+GHADICD+E+GRCICQ NT GDNC++CA+G+YGNAL G 
Sbjct: 727 GYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQCAKGFYGNALGGT 786

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
             DCK+CPCPN G C+Q+++D V+C+ECP+GY G +
Sbjct: 787 PNDCKRCPCPNDGACLQINEDTVICTECPKGYFGSR 822

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|226113|prf||1410326A laminin B2

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 78/96 (81%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY H P  GG F  C+PC+C+GHADICD+E+GRCICQ NT GDNC++CA+G+YGNAL G 
Sbjct: 384 GYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQCAKGFYGNALGGT 443

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
             DCK+CPCPN G C+Q+++D V+C+ECP+GY G +
Sbjct: 444 PNDCKRCPCPNDGACLQINEDTVICTECPKGYFGSR 479

Source: Drosophila sp.

Species: Drosophila sp.

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428901|ref|XP_002062504.1| GK16620 [Drosophila willistoni] gi|194158589|gb|EDW73490.1| GK16620 [Drosophila willistoni]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 76/96 (79%)

Query: 89  GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
           GY H P  GG F  C+PC+C+GHADICD+E+GRCICQ NT GDNC++CA+GYYGNAL G 
Sbjct: 733 GYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTFGDNCDQCAKGYYGNALGGT 792

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
             DCK+CPCPN G C+Q++ D V+C+ECP GY G +
Sbjct: 793 PYDCKRCPCPNDGACLQINGDTVICTECPVGYFGSR 828

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
FB|FBgn0002528	1639	LanB2 "Laminin B2" [Drosophila	0.505	0.058	0.625	8.6e-42
WB|WBGene00016913	1633	lam-2 [Caenorhabditis elegans	0.510	0.059	0.546	2.4e-35
UNIPROTKB|F1MD77	1608	LAMC1 "Uncharacterized protein	0.515	0.060	0.494	1.1e-30
UNIPROTKB|F1PHK9	1487	LAMC1 "Uncharacterized protein	0.515	0.065	0.474	2.4e-30
UNIPROTKB|F1S663	1606	LAMC1 "Uncharacterized protein	0.515	0.061	0.474	4.7e-30
MGI|MGI:99914	1607	Lamc1 "laminin, gamma 1" [Mus	0.515	0.060	0.464	1.6e-29
UNIPROTKB|P11047	1609	LAMC1 "Laminin subunit gamma-1	0.515	0.060	0.454	2.6e-29
UNIPROTKB|F1MAA7	1607	Lamc1 "Protein Lamc1" [Rattus	0.515	0.060	0.464	5.3e-29
UNIPROTKB|F1NI05	1007	LAMC1 "Uncharacterized protein	0.505	0.095	0.463	1.2e-28
MGI|MGI:99892	3084	Lama1 "laminin, alpha 1" [Mus	0.494	0.030	0.458	2.6e-28

FB|FBgn0002528 LanB2 "Laminin B2" [Drosophila melanogaster (taxid:7227)]

 Score = 406 (148.0 bits), Expect = 8.6e-42, Sum P(2) = 8.6e-42
 Identities = 60/96 (62%), Positives = 78/96 (81%)

Query:    89 GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
             GY H P  GG F  C+PC+C+GHADICD+E+GRCICQ NT GDNC++CA+G+YGNAL G 
Sbjct:   727 GYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQCAKGFYGNALGGT 786

Query:   149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
               DCK+CPCPN G C+Q+++D V+C+ECP+GY G +
Sbjct:   787 PNDCKRCPCPNDGACLQINEDTVICTECPKGYFGSR 822

GO:0005604 "basement membrane" evidence=ISS;NAS;IDA

GO:0031012 "extracellular matrix" evidence=IDA

GO:0005605 "basal lamina" evidence=IDA

GO:0009887 "organ morphogenesis" evidence=NAS

GO:0009888 "tissue development" evidence=NAS

GO:0048598 "embryonic morphogenesis" evidence=NAS

WB|WBGene00016913 lam-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 355 (130.0 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 53/97 (54%), Positives = 71/97 (73%)

Query:    88 TGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEG 147
             +G+  E   GG F+ C+ C+C+ H++ C+AESG CIC+ NT GD CERCARGYYG+AL+G
Sbjct:   718 SGFRRETKFGGPFNHCIKCDCHNHSNSCEAESGSCICEHNTAGDTCERCARGYYGDALQG 777

Query:   148 AVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184
                DC++CPCPN GPC+   D  V+C+ECP GY G +
Sbjct:   778 TEEDCQKCPCPNDGPCILHADGDVICTECPNGYTGRR 814

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

UNIPROTKB|F1MD77 LAMC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 292 (107.8 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
 Identities = 49/99 (49%), Positives = 62/99 (62%)

Query:    87 LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE 146
             L+GY  E  S G +S CV C CNGH++ CD ESG C C+DNT G NCE+C+ GYYG++  
Sbjct:   704 LSGYRRETPSLGPYSPCVLCTCNGHSETCDPESGVCNCRDNTAGPNCEKCSDGYYGDSTA 763

Query:   147 GAVTDCKQCPCPNQGPCVQLDDDQ-VVCSECPRGYGGEK 184
             G   DC+ CPCP    C  +   Q VVC+ CP G  G +
Sbjct:   764 GTSLDCQPCPCPGGSSCAVVPKTQEVVCTNCPTGTTGRR 802

GO:0043259 "laminin-10 complex" evidence=IEA

GO:0043208 "glycosphingolipid binding" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0031581 "hemidesmosome assembly" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0022617 "extracellular matrix disassembly" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

UNIPROTKB|F1PHK9 LAMC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 288 (106.4 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
 Identities = 47/99 (47%), Positives = 65/99 (65%)

Query:    87 LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE 146
             L+GY  E  S G +S CV C CNGH++ CD E+G C C+DNT G +CE+C+ GYYG++  
Sbjct:   583 LSGYRRETPSLGPYSPCVLCTCNGHSETCDPETGVCDCRDNTAGPHCEKCSDGYYGDSTT 642

Query:   147 GAVTDCKQCPCPNQGPCVQLDDDQ-VVCSECPRGYGGEK 184
             G+ +DC+ CPCP    C  +   Q VVC+ CP G  G++
Sbjct:   643 GSSSDCQPCPCPGGSSCAVVPKTQEVVCTNCPTGTTGKR 681

GO:0043259 "laminin-10 complex" evidence=IEA

GO:0043208 "glycosphingolipid binding" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0031581 "hemidesmosome assembly" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0022617 "extracellular matrix disassembly" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

UNIPROTKB|F1S663 LAMC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 286 (105.7 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
 Identities = 47/99 (47%), Positives = 64/99 (64%)

Query:    87 LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE 146
             L+GY  E  S G +S CV C CNGH++ CD E+G C C+DNT G +CE+C+ GYYG++  
Sbjct:   704 LSGYRRETPSLGPYSPCVLCTCNGHSETCDPETGVCNCRDNTAGPHCEKCSDGYYGDSTV 763

Query:   147 GAVTDCKQCPCPNQGPCVQLDDDQ-VVCSECPRGYGGEK 184
             G  +DC+ CPCP    C  +   Q VVC+ CP G  G++
Sbjct:   764 GTSSDCQPCPCPGGSSCAVVPKTQEVVCTNCPTGTTGKR 802

GO:0043259 "laminin-10 complex" evidence=IEA

GO:0043208 "glycosphingolipid binding" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0031581 "hemidesmosome assembly" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0022617 "extracellular matrix disassembly" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

MGI|MGI:99914 Lamc1 "laminin, gamma 1" [Mus musculus (taxid:10090)]

 Score = 281 (104.0 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
 Identities = 46/99 (46%), Positives = 63/99 (63%)

Query:    87 LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE 146
             L GY  E  S G +S CV C CNGH++ CD E+G C C+DNT G +CE+C+ GYYG++  
Sbjct:   703 LPGYRRETPSLGPYSPCVLCTCNGHSETCDPETGVCDCRDNTAGPHCEKCSDGYYGDSTL 762

Query:   147 GAVTDCKQCPCPNQGPCVQLDDD-QVVCSECPRGYGGEK 184
             G  +DC+ CPCP    C  +    +VVC+ CP G  G++
Sbjct:   763 GTSSDCQPCPCPGGSSCAIVPKTKEVVCTHCPTGTAGKR 801

GO:0005201 "extracellular matrix structural constituent" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=ISO

GO:0005604 "basement membrane" evidence=ISO;IDA

GO:0005605 "basal lamina" evidence=IDA

GO:0005606 "laminin-1 complex" evidence=ISO

GO:0006461 "protein complex assembly" evidence=ISO

GO:0007155 "cell adhesion" evidence=ISO

GO:0016477 "cell migration" evidence=ISO

GO:0022617 "extracellular matrix disassembly" evidence=ISO

GO:0031012 "extracellular matrix" evidence=ISO

GO:0031175 "neuron projection development" evidence=IDA

GO:0031581 "hemidesmosome assembly" evidence=ISO

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=ISO

GO:0043208 "glycosphingolipid binding" evidence=IDA

GO:0043259 "laminin-10 complex" evidence=IPI

GO:0070062 "extracellular vesicular exosome" evidence=ISO

UNIPROTKB|P11047 LAMC1 "Laminin subunit gamma-1" [Homo sapiens (taxid:9606)]

 Score = 279 (103.3 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
 Identities = 45/99 (45%), Positives = 64/99 (64%)

Query:    87 LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE 146
             L+GY  E  + G +S CV C CNGH++ CD E+G C C+DNT G +CE+C+ GYYG++  
Sbjct:   705 LSGYRRETPNLGPYSPCVLCACNGHSETCDPETGVCNCRDNTAGPHCEKCSDGYYGDSTA 764

Query:   147 GAVTDCKQCPCPNQGPCVQLDDD-QVVCSECPRGYGGEK 184
             G  +DC+ CPCP    C  +    +VVC+ CP G  G++
Sbjct:   765 GTSSDCQPCPCPGGSSCAVVPKTKEVVCTNCPTGTTGKR 803

GO:0043208 "glycosphingolipid binding" evidence=IEA

GO:0005606 "laminin-1 complex" evidence=NAS;TAS

GO:0005615 "extracellular space" evidence=NAS

GO:0005604 "basement membrane" evidence=IDA

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0007492 "endoderm development" evidence=TAS

GO:0016477 "cell migration" evidence=IMP

GO:0022617 "extracellular matrix disassembly" evidence=IMP

GO:0006461 "protein complex assembly" evidence=IDA

GO:0031581 "hemidesmosome assembly" evidence=IMP

GO:0005201 "extracellular matrix structural constituent" evidence=IMP

GO:0007155 "cell adhesion" evidence=IDA

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0031012 "extracellular matrix" evidence=ISS;IDA

GO:0043260 "laminin-11 complex" evidence=TAS

GO:0043259 "laminin-10 complex" evidence=TAS

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IDA

UNIPROTKB|F1MAA7 Lamc1 "Protein Lamc1" [Rattus norvegicus (taxid:10116)]

 Score = 281 (104.0 bits), Expect = 5.3e-29, Sum P(2) = 5.3e-29
 Identities = 46/99 (46%), Positives = 63/99 (63%)

Query:    87 LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE 146
             L GY  E  S G +S CV C CNGH++ CD E+G C C+DNT G +CE+C+ GYYG++  
Sbjct:   703 LPGYRRETPSLGPYSPCVLCTCNGHSETCDPETGVCDCRDNTAGPHCEKCSDGYYGDSTL 762

Query:   147 GAVTDCKQCPCPNQGPCVQLDDD-QVVCSECPRGYGGEK 184
             G  +DC+ CPCP    C  +    +VVC+ CP G  G++
Sbjct:   763 GTSSDCQPCPCPGGSSCAIVPKTKEVVCTHCPTGTAGKR 801

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0022617 "extracellular matrix disassembly" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0031581 "hemidesmosome assembly" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0043208 "glycosphingolipid binding" evidence=IEA

GO:0043259 "laminin-10 complex" evidence=IEA

UNIPROTKB|F1NI05 LAMC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 283 (104.7 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 45/97 (46%), Positives = 60/97 (61%)

Query:    89 GYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA 148
             GY  E    G +S CVPC CNGH++ CD E+G C C+DNT G +CE+C+ GYYG+A  G 
Sbjct:   462 GYRRETPGLGPYSPCVPCTCNGHSETCDPETGMCDCRDNTAGSHCEKCSDGYYGDATAGT 521

Query:   149 VTDCKQCPCPNQGPCVQLD-DDQVVCSECPRGYGGEK 184
               DC+ CPCP    C  +    +VVC+ C  G  G++
Sbjct:   522 ALDCQPCPCPGGSSCAVVPRTKEVVCTSCQTGTTGKR 558

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0022617 "extracellular matrix disassembly" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0031581 "hemidesmosome assembly" evidence=IEA

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=IEA

GO:0043208 "glycosphingolipid binding" evidence=IEA

GO:0043259 "laminin-10 complex" evidence=IEA

MGI|MGI:99892 Lama1 "laminin, alpha 1" [Mus musculus (taxid:10090)]

 Score = 254 (94.5 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
 Identities = 50/109 (45%), Positives = 63/109 (57%)

Query:    89 GYHHE--PTSGGAFSR-----CVPCNCNGHADICDAESGRCI-CQDNTGGDNCERCARGY 140
             GY+ E  P SGG   R     CVPCNCN H+D+CD E+G+C+ C+D+T GD+CE CA GY
Sbjct:  1386 GYYREKLPESGGRGPRPLLAPCVPCNCNNHSDVCDPETGKCLSCRDHTSGDHCELCASGY 1445

Query:   141 YGNALEGAVTDCKQCPCPNQGP------CVQLDDDQVVCSECPRGYGGE 183
             YG  + G   DC  C CP+  P      CV   D    C+ C  GY G+
Sbjct:  1446 YGK-VTGLPGDCTPCTCPHHPPFSFSPTCVVEGDSDFRCNACLPGYEGQ 1493

GO:0002011 "morphogenesis of an epithelial sheet" evidence=IMP

GO:0005102 "receptor binding" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0005604 "basement membrane" evidence=ISO;IDA

GO:0005605 "basal lamina" evidence=TAS

GO:0005606 "laminin-1 complex" evidence=ISO;IDA

GO:0005608 "laminin-3 complex" evidence=ISO

GO:0005615 "extracellular space" evidence=ISO

GO:0005911 "cell-cell junction" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IDA

GO:0009888 "tissue development" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IDA

GO:0031175 "neuron projection development" evidence=IDA

GO:0043208 "glycosphingolipid binding" evidence=IDA

GO:0043256 "laminin complex" evidence=IDA

GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IMP

GO:0045995 "regulation of embryonic development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0060441 "epithelial tube branching involved in lung morphogenesis" evidence=IMP

GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IMP

GO:0061304 "retinal blood vessel morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1LVF0	LAMC1_DANRE	No assigned EC number	0.5116	0.4473	0.0533	yes	N/A
A0JP86	LAMC1_XENTR	No assigned EC number	0.5051	0.5052	0.0603	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	190
cd00055	50	cd00055, EGF_Lam, Laminin-type epidermal growth fa	3e-09
pfam00053	49	pfam00053, Laminin_EGF, Laminin EGF-like (Domains	2e-07
smart00180	46	smart00180, EGF_Lam, Laminin-type epidermal growth	1e-06
cd00055	50	cd00055, EGF_Lam, Laminin-type epidermal growth fa	0.001

>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 105 PCNCNGHADI---CDAESGRCICQDNTGGDNCERCARGYYGNALEG 147
           PC+CNGH  +   CD  +G+C C+ NT G  C+RCA GYYG   +G
Sbjct: 1   PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQG 46

Length = 50

>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V)

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 106 CNCNGHA---DICDAESGRCICQDNTGGDNCERCARGYYGNA 144
           C+CN H    D CD E+G+C+C+    G +C+RC  GYYG  
Sbjct: 1   CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLP 42

This family is like pfam00008 but has 8 conserved cysteines instead of six. Length = 49

>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like domai

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 106 CNCNG---HADICDAESGRCICQDNTGGDNCERCARGYYGNALEG 147
           C+C+     +  CD ++G+C C+ N  G  C+RCA GYYG+   G
Sbjct: 1   CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPPG 45

Length = 46

>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 4  RCICQDNTGGDNCERCARGYYGNALEG 30
          +C C+ NT G  C+RCA GYYG   +G
Sbjct: 20 QCECKPNTTGRRCDRCAPGYYGLPSQG 46

Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
KOG0994|consensus	1758		99.9
KOG0994|consensus	1758		99.82
KOG3512|consensus	592		99.71
KOG1836|consensus	1705		99.7
KOG1836|consensus	1705		99.54
KOG3512|consensus	592		99.36
KOG1219|consensus	4289		99.23
KOG4289|consensus	2531		99.03
KOG4289|consensus	2531		98.93
KOG1225|consensus	525		98.85
KOG1226|consensus	783		98.59
KOG1219|consensus	4289		98.57
KOG1225|consensus	525		98.52
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	98.51
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	98.37
KOG1214|consensus	1289		98.34
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	98.32
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	98.07
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.03
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	98.02
KOG4260|consensus	350		98.02
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	97.92
KOG1217|consensus	487		97.91
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.61
KOG1217|consensus	487		97.48
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.32
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.21
KOG4260|consensus	350		97.21
KOG3509|consensus	964		97.15
KOG1226|consensus	783		96.79
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.72
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.67
smart00051	63	DSL delta serrate ligand.	96.56
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.53
KOG3509|consensus	964		96.51
smart00181	35	EGF Epidermal growth factor-like domain.	96.47
smart00051	63	DSL delta serrate ligand.	96.45
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.34
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	96.14
KOG1214|consensus	1289		96.02
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	95.98
KOG1388|consensus	217		95.3
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	95.05
KOG1218|consensus	316		94.65
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	94.2
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	93.65
KOG1218|consensus	316		93.55
cd00053	36	EGF Epidermal growth factor domain, found in epide	92.66
smart00181	35	EGF Epidermal growth factor-like domain.	90.6
KOG0196|consensus	996		88.15
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	88.0
PHA02887	126	EGF-like protein; Provisional	87.12
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	86.63
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	85.14
KOG0196|consensus	996		83.38
KOG1388|consensus	217		83.21
KOG3514|consensus	1591		80.67

>KOG0994|consensus

Probab=99.90  E-value=6e-24  Score=184.88  Aligned_cols=162  Identities=38%  Similarity=0.854  Sum_probs=132.2

Q ss_pred             CceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccC
Q psy15473          2 FRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTR   81 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~   81 (190)
                      .|+|+|++|..|..|++|+||+||..-++    |.++.|+.-|+-..+-+..      ..+|.|.++.-         ++
T Consensus       781 GGqCqCkPnVVGR~CdqCApGtyGFGPsG----Ck~CdC~~~Gs~~~~Cd~~------tGQC~C~~g~y---------gr  841 (1758)
T KOG0994|consen  781 GGQCQCKPNVVGRRCDQCAPGTYGFGPSG----CKACDCNSIGSLDKYCDKI------TGQCQCRPGTY---------GR  841 (1758)
T ss_pred             CceecccCccccccccccCCcccCcCCcc----Ccccccccccccccccccc------ccceeeccccc---------hh
Confidence            47899999999999999999999998554    9999999877644433221      14566665544         46


Q ss_pred             CCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCee-eCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCC
Q psy15473         82 QTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRC-ICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQ  160 (190)
Q Consensus        82 ~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C-~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~  160 (190)
                      +|..|.|||||.       ++|.+|+|++|+++|++++|.| .|+..++|..|+.|+.||||++--..-..|.|+||..+
T Consensus       842 qCnqCqpG~WgF-------PeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~g  914 (1758)
T KOG0994|consen  842 QCNQCQPGYWGF-------PECRPCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDG  914 (1758)
T ss_pred             hccccCCCccCC-------CcCccccccCcccccCccccccccccccccccchhhhhccccCCcccCCCCCCCCCCCCCC
Confidence            678899999984       6799999999999999999999 59999999999999999999987665566999999765


Q ss_pred             C--------Cceec-CCCCeeeCCCCCCCCCCCCCCCCC
Q psy15473        161 G--------PCVQL-DDDQVVCSECPRGYGGEKMSPGAQ  190 (190)
Q Consensus       161 g--------~C~~~-~~~~~~C~~C~~G~~G~~C~~c~~  190 (190)
                      .        +|+.. ....-.| .|++||.|.+|+.||+
T Consensus       915 p~Sg~~~A~sC~~d~~t~~ivC-~C~~GY~G~RCe~CA~  952 (1758)
T KOG0994|consen  915 PASGRQHADSCYLDTRTQQIVC-HCQEGYSGSRCEICAD  952 (1758)
T ss_pred             Cccchhccccccccccccceee-ecccCccccchhhhcc
Confidence            2        46543 2234799 9999999999999985

>KOG0994|consensus

Probab=99.82  E-value=2.7e-20  Score=162.39  Aligned_cols=177  Identities=26%  Similarity=0.618  Sum_probs=136.2

Q ss_pred             CCceeecCCCCCCCCCccCCCCcccCCCCC----CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCC--CCC
Q psy15473          1 MFRRCICQDNTGGDNCERCARGYYGNALEG----AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG--NRT   74 (190)
Q Consensus         1 ~~~~C~C~~g~~G~~C~~C~~g~~g~~c~~----~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g--~~c   74 (190)
                      |+|+|+|+|||.|.+||+|++.|...+|..    ..|+|+.|.|+.|+.-..|+....-..++.        ++|  ..|
T Consensus       298 VHG~C~C~HNT~G~nCE~C~~fYnDlPWrpAeG~~~neCrkC~CNgHa~sCHFD~aV~~ASG~v--------SGGVCDdC  369 (1758)
T KOG0994|consen  298 VHGRCMCKHNTAGLNCEHCAPFYNDLPWRPAEGKTSNECRKCECNGHADTCHFDMAVYEASGNV--------SGGVCDDC  369 (1758)
T ss_pred             ecceeEeccCCCCCChHHhhHhhcCCCCCccCCCCcccccccCCCCCcccccccHHHHhhcCCc--------ccccCccc
Confidence            689999999999999999999999999984    568999999999987555543322222222        222  235


Q ss_pred             CCccccCCCccCCCCcccCCC-CCCCCCCcccCCCcCCCC--------CccCCC----CeeeCCCCCCCCCCccCCCCcc
Q psy15473         75 RGLALTRQTHYQLTGYHHEPT-SGGAFSRCVPCNCNGHAD--------ICDAES----GRCICQDNTGGDNCERCARGYY  141 (190)
Q Consensus        75 ~~~~~~~~~~~C~~G~~g~~~-~~~~~~~C~~c~C~~~~~--------~C~~~~----g~C~C~~g~~G~~C~~C~~G~~  141 (190)
                      +..+.++.|..|+|.|+..+. .......|++|.|+..+.        .+++.+    |+|.|++++.|.+|++|++|||
T Consensus       370 qHNT~G~~CE~CkP~fYRdprr~i~~p~vC~pC~CdP~GS~~~g~cds~~Dp~~GlvaGqC~CK~~V~G~RCd~Ck~Gyw  449 (1758)
T KOG0994|consen  370 QHNTEGQNCERCKPFFYRDPRRDISDPDVCKPCECDPAGSQDGGICDSFCDPSTGLVAGQCRCKEHVAGRRCDRCKDGYW  449 (1758)
T ss_pred             cccccccchhhcCcccccCCCCCCCCccccccccCCCCcCcCCCccccccCccccccccccccccCcCccccchhccCcc
Confidence            555666677889999998764 333457899999987652        255555    8999999999999999999999


Q ss_pred             cCCCCCCCCCCcCCCCCCCCC-----ceecCCCCeeeCCCCCCCCCCCCCCCCC
Q psy15473        142 GNALEGAVTDCKQCPCPNQGP-----CVQLDDDQVVCSECPRGYGGEKMSPGAQ  190 (190)
Q Consensus       142 g~~c~~~~~~C~~~~C~~~g~-----C~~~~~~~~~C~~C~~G~~G~~C~~c~~  190 (190)
                      |..-+ ++..|.+|.|+..||     |+..   ++.| .|++-.+|+.|++|+|
T Consensus       450 gl~~~-dp~GC~~C~CN~lGT~~~s~CD~~---TG~C-~ckrlvTg~~cdqclP  498 (1758)
T KOG0994|consen  450 GLTSA-DPYGCRPCDCNPLGTRNGSGCDPE---TGDC-YCKRLVTGIDCDQCLP  498 (1758)
T ss_pred             cCccC-CCCCccccccccccccCCCCCCCC---CCce-EeeccccCCCccccCc
Confidence            97643 567799999976654     5543   4899 8999999999999986

>KOG3512|consensus

Probab=99.71  E-value=5e-17  Score=131.50  Aligned_cols=171  Identities=24%  Similarity=0.559  Sum_probs=117.8

Q ss_pred             ceeecCCCCCCCCCccCCCCcccCCCCC----CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCcc
Q psy15473          3 RRCICQDNTGGDNCERCARGYYGNALEG----AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLA   78 (190)
Q Consensus         3 ~~C~C~~g~~G~~C~~C~~g~~g~~c~~----~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~   78 (190)
                      ..|.|+|||+|+.|++|++.|++.+|..    ++++|..+.|+.|++-..+........+....-+|      .+|...+
T Consensus       295 ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvC------lnCrHnT  368 (592)
T KOG3512|consen  295 LTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELYRLSGRRSGGVC------LNCRHNT  368 (592)
T ss_pred             eEEecccCCCCCCcccccccccCCCccccccCCCccccccccchhhhhcccchhhhcccCccccceE------eecccCC
Confidence            4799999999999999999999999984    67899999999988732232222111221110011      2345555


Q ss_pred             ccCCCccCCCCcccCCC-CCCCCCCcccCCCcCCC---CCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcC
Q psy15473         79 LTRQTHYQLTGYHHEPT-SGGAFSRCVPCNCNGHA---DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ  154 (190)
Q Consensus        79 ~~~~~~~C~~G~~g~~~-~~~~~~~C~~c~C~~~~---~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~  154 (190)
                      .++.|++|.+||+...- +......|..|.|+..+   .+|+..+|+|.|++|.+|..|..|.+||+...-.  +--|..
T Consensus       369 aGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCnrCa~gyqqsrs~--vapcik  446 (592)
T KOG3512|consen  369 AGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCNRCAPGYQQSRSP--VAPCIK  446 (592)
T ss_pred             CCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCCcccCCCCCcccccccccchhhcccCC--CcCcee
Confidence            56777999999998654 33334689999998654   5899999999999999999999999999864321  111322


Q ss_pred             CC------CCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        155 CP------CPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       155 ~~------C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      .|      +.++++  .   ....+ .|+.++.|.++++
T Consensus       447 ~p~~~~~~~~s~ve--~---qd~~s-~Ck~~~~~~r~n~  479 (592)
T KOG3512|consen  447 IPTDAPTLGSSGVE--P---QDQCS-KCKASPGGKRLNQ  479 (592)
T ss_pred             cCCCCccccCCCCc--c---hhccc-cCCCCCcceeccc
Confidence            22      222222  1   22455 8999998888764

>KOG1836|consensus

Probab=99.70  E-value=1.3e-16  Score=147.84  Aligned_cols=180  Identities=26%  Similarity=0.620  Sum_probs=140.8

Q ss_pred             CCceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEe-ecCCCCCCCCCCc--
Q psy15473          1 MFRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIR-IKSALGGNRTRGL--   77 (190)
Q Consensus         1 ~~~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~-c~~~~~g~~c~~~--   77 (190)
                      .+|+|.|++++.|..|++|.+||||..-....++|++++|++.+.|.......      ...|. |+++|.|.+|+.-  
T Consensus       743 ~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~------~~iCk~Cp~gytG~rCe~c~d  816 (1705)
T KOG1836|consen  743 RTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEIL------EVVCKNCPPGYTGLRCEECAD  816 (1705)
T ss_pred             CCCceecccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCccc------ceecCCCCCCCcccccccCCC
Confidence            47899999999999999999999999988888789999999999888776421      13455 7778777655411  


Q ss_pred             ----------------------------------------------cccCCCccCCCCcccCCCCCCCCCCcccCCCcCC
Q psy15473         78 ----------------------------------------------ALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGH  111 (190)
Q Consensus        78 ----------------------------------------------~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~  111 (190)
                                                                    ..+..++.|.+||||+.-...+.+.|..+.|+..
T Consensus       817 gyfg~p~~~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~  896 (1705)
T KOG1836|consen  817 GYFGNPLGHDGDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPA  896 (1705)
T ss_pred             ccccCCCCCCCCcccCccceeccccCccccccccccccceeeccCCcccccccccccCccccccCCCcCCccccccCccC
Confidence                                                          0122345588999998754345577888888765


Q ss_pred             C-----CCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceec-CCCCeeeCCCCCCCCCCCC
Q psy15473        112 A-----DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQL-DDDQVVCSECPRGYGGEKM  185 (190)
Q Consensus       112 ~-----~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C  185 (190)
                      +     .+|++.+|+|.|+++..|..|..|.+|||+..-.   ..|.++.|...|+-... ..+++.| .|++|.+|.+|
T Consensus       897 gs~~~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s~---~gC~~c~c~~~gs~~~~c~~~tGqc-~c~~gVtgqrc  972 (1705)
T KOG1836|consen  897 GSELPSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLNSG---VGCEPCNCDPTGSESSDCDVGTGQC-YCRPGVTGQRC  972 (1705)
T ss_pred             CcccccccCCCcccceeccCCCCccccccccccccccCCC---CCcccccccccccccccccccCCce-eeecCcccccc
Confidence            4     2599999999999999999999999999998732   56899999887753222 2355899 99999999999


Q ss_pred             CCCCC
Q psy15473        186 SPGAQ  190 (190)
Q Consensus       186 ~~c~~  190 (190)
                      ++|+.
T Consensus       973 ~qc~~  977 (1705)
T KOG1836|consen  973 DQCET  977 (1705)
T ss_pred             Ccccc
Confidence            99863

>KOG1836|consensus

Probab=99.54  E-value=2e-14  Score=133.55  Aligned_cols=119  Identities=38%  Similarity=0.881  Sum_probs=104.0

Q ss_pred             eEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcc
Q psy15473         62 RIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYY  141 (190)
Q Consensus        62 ~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~  141 (190)
                      .|.|+.+|.|..|         ..|++||+...-...++..|.+|+|+++..+|++.+|+|.|++++.|.+|++|..|||
T Consensus       696 ~c~C~~g~tG~~C---------e~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfY  766 (1705)
T KOG1836|consen  696 QCTCPVGYTGQFC---------ESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQCVDGFY  766 (1705)
T ss_pred             hccCCCCcccchh---------hhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhhhcCCCC
Confidence            4889999998776         5699999998776656678888999988889999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcCCCCCCCCCceecC-CCCeeeCCCCCCCCCCCCCCCC
Q psy15473        142 GNALEGAVTDCKQCPCPNQGPCVQLD-DDQVVCSECPRGYGGEKMSPGA  189 (190)
Q Consensus       142 g~~c~~~~~~C~~~~C~~~g~C~~~~-~~~~~C~~C~~G~~G~~C~~c~  189 (190)
                      |.+-.....+|++++|.+.+.|.... ...+.|.+|++||+|.+|+.|+
T Consensus       767 g~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~  815 (1705)
T KOG1836|consen  767 GLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECA  815 (1705)
T ss_pred             CccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCC
Confidence            99877766779999999998887653 4568996699999999999986

>KOG3512|consensus

Probab=99.36  E-value=3.1e-12  Score=104.05  Aligned_cols=134  Identities=30%  Similarity=0.641  Sum_probs=102.9

Q ss_pred             CCCCCCCCC-ceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCC---CCCCCcccCCCcCCC
Q psy15473         37 QCPCPNQGP-CVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSG---GAFSRCVPCNCNGHA  112 (190)
Q Consensus        37 ~~~C~~~g~-C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~---~~~~~C~~c~C~~~~  112 (190)
                      .|.|+.|++ |+....+       +..|.|+.+..|+-|         ..|++-|++.++..   .+.+.|..+.|+.|+
T Consensus       277 RCKCNgHAs~Cv~d~~~-------~ltCdC~HNTaGPdC---------grCKpfy~dRPW~raT~~~a~~c~ac~Cn~ha  340 (592)
T KOG3512|consen  277 RCKCNGHASRCVMDESS-------HLTCDCEHNTAGPDC---------GRCKPFYYDRPWGRATALPANECVACNCNGHA  340 (592)
T ss_pred             eeeecCccceeeeccCC-------ceEEecccCCCCCCc---------ccccccccCCCccccccCCCccccccccchhh
Confidence            367888877 6655433       257999999888665         67999999887643   245789999999887


Q ss_pred             CCccCC-----------CCee-eCCCCCCCCCCccCCCCcccCCCCC--CCCCCcCCCCCCCCC----ceecCCCCeeeC
Q psy15473        113 DICDAE-----------SGRC-ICQDNTGGDNCERCARGYYGNALEG--AVTDCKQCPCPNQGP----CVQLDDDQVVCS  174 (190)
Q Consensus       113 ~~C~~~-----------~g~C-~C~~g~~G~~C~~C~~G~~g~~c~~--~~~~C~~~~C~~~g~----C~~~~~~~~~C~  174 (190)
                      ..|-..           .|.| .|++++.|.+|+.|++|||.+.-..  ...+|..|.|+..|+    |...   +++| 
T Consensus       341 rrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~---tGqC-  416 (592)
T KOG3512|consen  341 RRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQT---TGQC-  416 (592)
T ss_pred             hhcccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCccccccccccccc---CCcc-
Confidence            645321           2477 6999999999999999999876542  235699999998874    5543   3899 


Q ss_pred             CCCCCCCCCCCCCCCC
Q psy15473        175 ECPRGYGGEKMSPGAQ  190 (190)
Q Consensus       175 ~C~~G~~G~~C~~c~~  190 (190)
                      .|++|.+|..|++||+
T Consensus       417 pCkeGvtG~tCnrCa~  432 (592)
T KOG3512|consen  417 PCKEGVTGLTCNRCAP  432 (592)
T ss_pred             cCCCCCcccccccccc
Confidence            9999999999999986

>KOG1219|consensus

Probab=99.23  E-value=2.2e-11  Score=113.14  Aligned_cols=120  Identities=22%  Similarity=0.543  Sum_probs=87.8

Q ss_pred             CCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccC
Q psy15473         27 ALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPC  106 (190)
Q Consensus        27 ~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c  106 (190)
                      .|....+.|...||+|+|+|.....+       .+.|.|++.|.|.+                     |+. ....|.+.
T Consensus      3859 gC~l~~d~C~~npCqhgG~C~~~~~g-------gy~CkCpsqysG~~---------------------CEi-~~epC~sn 3909 (4289)
T KOG1219|consen 3859 GCSLLTDPCNDNPCQHGGTCISQPKG-------GYKCKCPSQYSGNH---------------------CEI-DLEPCASN 3909 (4289)
T ss_pred             cccccccccccCcccCCCEecCCCCC-------ceEEeCcccccCcc---------------------ccc-ccccccCC
Confidence            34444578999999999999876643       25666665555544                     443 35678888


Q ss_pred             CCcCCCCCccCCC--CeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCC
Q psy15473        107 NCNGHADICDAES--GRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK  184 (190)
Q Consensus       107 ~C~~~~~~C~~~~--g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~  184 (190)
                      +|.. +.+|.+..  ..|.|+.+|+|.+|+.  .|         +++|...+|.++|.|.... +++.| +|.+||.|+.
T Consensus      3910 PC~~-GgtCip~~n~f~CnC~~gyTG~~Ce~--~G---------i~eCs~n~C~~gg~C~n~~-gsf~C-ncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3910 PCLT-GGTCIPFYNGFLCNCPNGYTGKRCEA--RG---------ISECSKNVCGTGGQCINIP-GSFHC-NCTPGILGRT 3975 (4289)
T ss_pred             CCCC-CCEEEecCCCeeEeCCCCccCceeec--cc---------ccccccccccCCceeeccC-CceEe-ccChhHhccc
Confidence            9985 44887643  3677777777777742  11         5789999999999999875 77999 9999999999


Q ss_pred             CCCCC
Q psy15473        185 MSPGA  189 (190)
Q Consensus       185 C~~c~  189 (190)
                      |.-.+
T Consensus      3976 c~~~~ 3980 (4289)
T KOG1219|consen 3976 CCAEK 3980 (4289)
T ss_pred             Ccccc
Confidence            86444

>KOG4289|consensus

Probab=99.03  E-value=7.3e-10  Score=100.09  Aligned_cols=118  Identities=25%  Similarity=0.544  Sum_probs=89.4

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccCCCcCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHA  112 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~  112 (190)
                      +.|..+||.+.|+|+..++..      -+.|.|+++|.|++|+...    ...|+.||||.       +.|.+|.|.-+.
T Consensus      1717 ~vC~lnpc~~~g~Cv~sp~a~------GY~C~C~~g~~G~~Ce~~~----dq~CPrGWWG~-------P~CgpC~CavsK 1779 (2531)
T KOG4289|consen 1717 DVCSLNPCENQGTCVRSPGAH------GYTCECPPGYTGPYCELRA----DQPCPRGWWGF-------PTCGPCNCAVSK 1779 (2531)
T ss_pred             chhcccccccCceeecCCCCC------ceeEECCCcccCcchhhhc----cCCCCCcccCC-------CCccCccccccC
Confidence            357889999999998877652      2789999999999997655    35699999994       468888887443


Q ss_pred             ---CCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCC---CceecCCCCeeeCCCCCCCCCCCCC
Q psy15473        113 ---DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQG---PCVQLDDDQVVCSECPRGYGGEKMS  186 (190)
Q Consensus       113 ---~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g---~C~~~~~~~~~C~~C~~G~~G~~C~  186 (190)
                         ..|+..+|+|+||++.            |.     .+..|.+|.|..+.   +|.    ..++| .|++|.+|++|+
T Consensus      1780 gfdp~CnKt~G~CqCKe~h------------y~-----~~~~Cl~CdC~~Gs~Sr~C~----adGqC-~C~pgaiGRqCd 1837 (2531)
T KOG4289|consen 1780 GFDPDCNKTNGQCQCKENH------------YR-----PIGSCLPCDCYFGSDSRECD----ADGQC-PCKPGAIGRQCD 1837 (2531)
T ss_pred             CCCCCccccCcceeecccc------------cc-----CCCcceeeccccCCCccccc----CCCcC-CCCCcccccccc
Confidence               3799999999988653            21     12337788887433   243    23799 999999999999


Q ss_pred             CCC
Q psy15473        187 PGA  189 (190)
Q Consensus       187 ~c~  189 (190)
                      +|.
T Consensus      1838 rCd 1840 (2531)
T KOG4289|consen 1838 RCD 1840 (2531)
T ss_pred             ccC
Confidence            984

>KOG4289|consensus

Probab=98.93  E-value=3.2e-09  Score=96.09  Aligned_cols=55  Identities=25%  Similarity=0.614  Sum_probs=47.2

Q ss_pred             CCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         12 GGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        12 ~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      .|..| +||+||+|+.|+..++.|-+.||.++|+|....++        ++|.|.++|.|.+|+
T Consensus      1220 nglrC-rCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEgg--------YtCeCrpg~tGehCE 1274 (2531)
T KOG4289|consen 1220 NGLRC-RCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGG--------YTCECRPGFTGEHCE 1274 (2531)
T ss_pred             CceeE-eCCCCCCcccccchhHhhhcCCCCCCCceEEecCc--------eeEEecCCcccccee
Confidence            35667 89999999999999999999999999999998876        578888887777764

>KOG1225|consensus

Probab=98.85  E-value=1e-08  Score=86.42  Aligned_cols=67  Identities=25%  Similarity=0.557  Sum_probs=39.7

Q ss_pred             eEeecCCCCCCCCCCccccCC----------CccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCC
Q psy15473         62 RIRIKSALGGNRTRGLALTRQ----------THYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGD  131 (190)
Q Consensus        62 ~c~c~~~~~g~~c~~~~~~~~----------~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~  131 (190)
                      .|.|+++|.|..|........          -..|.+||+|+.|+.   ..|. -+|.+++ .|.  .|+|.|.+||+|.
T Consensus       266 ~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g~CiC~~g~~G~dCs~---~~cp-adC~g~G-~Ci--~G~C~C~~Gy~G~  338 (525)
T KOG1225|consen  266 RCICPPGFTGDDCDELVCPVDCSGGGVCVDGECICNPGYSGKDCSI---RRCP-ADCSGHG-KCI--DGECLCDEGYTGE  338 (525)
T ss_pred             eEeCCCCCcCCCCCcccCCcccCCCceecCCEeecCCCcccccccc---ccCC-ccCCCCC-ccc--CCceEeCCCCcCC
Confidence            566666666655544222111          123777888877754   2233 5677666 775  6788877777777


Q ss_pred             CCcc
Q psy15473        132 NCER  135 (190)
Q Consensus       132 ~C~~  135 (190)
                      .|++
T Consensus       339 ~C~~  342 (525)
T KOG1225|consen  339 LCIQ  342 (525)
T ss_pred             cccc
Confidence            6653

>KOG1226|consensus

Probab=98.59  E-value=2.3e-07  Score=80.19  Aligned_cols=134  Identities=25%  Similarity=0.625  Sum_probs=75.3

Q ss_pred             ceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcC----CCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCcc
Q psy15473          3 RRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ----CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLA   78 (190)
Q Consensus         3 ~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~----~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~   78 (190)
                      |+|.|.+||.|..| .|+..-+... + ..+.|+.    .+|.+.|.|.-            .+|.|.....+       
T Consensus       478 G~C~C~~G~~G~~C-EC~~~~~ss~-~-~~~~Cr~~~~~~vCSgrG~C~C------------GqC~C~~~~~~-------  535 (783)
T KOG1226|consen  478 GQCRCDEGWLGKKC-ECSTDELSSS-E-EEDKCRENSDSPVCSGRGDCVC------------GQCVCHKPDNG-------  535 (783)
T ss_pred             cceecCCCCCCCcc-cCCccccCcH-h-HHhhccCCCCCCCcCCCCcEeC------------CceEecCCCCC-------
Confidence            56777777777777 4554433321 0 1234542    26777766643            24555433321       


Q ss_pred             ccCCCccCCCCcccCCCCCCCCCCccc---CCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCC
Q psy15473         79 LTRQTHYQLTGYHHEPTSGGAFSRCVP---CNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQC  155 (190)
Q Consensus        79 ~~~~~~~C~~G~~g~~~~~~~~~~C~~---c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~  155 (190)
                                -++|..|+-+. ..|..   .-|.+++ .|.  -|+|+|.+||+|..| .|.         .+.+.|.+.
T Consensus       536 ----------~i~G~fCECDn-fsC~r~~g~lC~g~G-~C~--CG~CvC~~GwtG~~C-~C~---------~std~C~~~  591 (783)
T KOG1226|consen  536 ----------KIYGKFCECDN-FSCERHKGVLCGGHG-RCE--CGRCVCNPGWTGSAC-NCP---------LSTDTCESS  591 (783)
T ss_pred             ----------ceeeeeeeccC-cccccccCcccCCCC-eEe--CCcEEcCCCCccCCC-CCC---------CCCccccCC
Confidence                      13344443211 12221   1255555 453  478899999999988 454         233445543


Q ss_pred             ---CCCCCCCceecCCCCeeeCCCCCC-CCCCCCCCC
Q psy15473        156 ---PCPNQGPCVQLDDDQVVCSECPRG-YGGEKMSPG  188 (190)
Q Consensus       156 ---~C~~~g~C~~~~~~~~~C~~C~~G-~~G~~C~~c  188 (190)
                         -|...|+|.-     ++| .|... |.|..||.|
T Consensus       592 ~G~iCSGrG~C~C-----g~C-~C~~~~~sG~~CE~c  622 (783)
T KOG1226|consen  592 DGQICSGRGTCEC-----GRC-KCTDPPYSGEFCEKC  622 (783)
T ss_pred             CCceeCCCceeeC-----Cce-EcCCCCcCcchhhcC
Confidence               2777777765     567 77665 899999876

>KOG1219|consensus

Probab=98.57  E-value=6.4e-08  Score=91.09  Aligned_cols=92  Identities=26%  Similarity=0.603  Sum_probs=72.6

Q ss_pred             CCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcc
Q psy15473         12 GGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYH   91 (190)
Q Consensus        12 ~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~   91 (190)
                      .|..| +|++-|.|..|+.+...|.++||..+|+|+.+.+++        .|.|+                     .||+
T Consensus      3884 ggy~C-kCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f--------~CnC~---------------------~gyT 3933 (4289)
T KOG1219|consen 3884 GGYKC-KCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGF--------LCNCP---------------------NGYT 3933 (4289)
T ss_pred             CceEE-eCcccccCcccccccccccCCCCCCCCEEEecCCCe--------eEeCC---------------------CCcc
Confidence            45667 899999999999999999999999999999987663        45555                     4555


Q ss_pred             cCCCCCCCCCCcccCCCcCCCCCccCCCC--eeeCCCCCCCCCCc
Q psy15473         92 HEPTSGGAFSRCVPCNCNGHADICDAESG--RCICQDNTGGDNCE  134 (190)
Q Consensus        92 g~~~~~~~~~~C~~c~C~~~~~~C~~~~g--~C~C~~g~~G~~C~  134 (190)
                      |..|+...+++|....|. ++..|..+-|  .|.|.+++.|+.|.
T Consensus      3934 G~~Ce~~Gi~eCs~n~C~-~gg~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3934 GKRCEARGISECSKNVCG-TGGQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred             Cceeeccccccccccccc-CCceeeccCCceEeccChhHhcccCc
Confidence            555544335778888888 4558987766  89999999999885

>KOG1225|consensus

Probab=98.52  E-value=3.8e-07  Score=77.10  Aligned_cols=102  Identities=24%  Similarity=0.573  Sum_probs=66.9

Q ss_pred             eEeecCCCCCCCCCCccccCC----------CccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCC
Q psy15473         62 RIRIKSALGGNRTRGLALTRQ----------THYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGD  131 (190)
Q Consensus        62 ~c~c~~~~~g~~c~~~~~~~~----------~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~  131 (190)
                      .|.|..+|.|..|........          -..|++||+|..|+.   ..|..- |+.+. .+  +.+.|+|+++|.|.
T Consensus       235 ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e---~~Cp~~-cs~~g-~~--~~g~CiC~~g~~G~  307 (525)
T KOG1225|consen  235 ICECPEGYFGPLCSTIYCPGGCTGRGQCVEGRCICPPGFTGDDCDE---LVCPVD-CSGGG-VC--VDGECICNPGYSGK  307 (525)
T ss_pred             eeecCCceeCCccccccCCCCCcccceEeCCeEeCCCCCcCCCCCc---ccCCcc-cCCCc-ee--cCCEeecCCCcccc
Confidence            466666666655543222111          134999999999864   234422 55443 33  35799999999999


Q ss_pred             CCc-------------------cCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCC
Q psy15473        132 NCE-------------------RCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK  184 (190)
Q Consensus       132 ~C~-------------------~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~  184 (190)
                      .|+                   .|.+||+|..|...       +|.+++.|.+     + | .|..||.|++
T Consensus       308 dCs~~~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~~-------~C~~~g~cv~-----g-C-~C~~Gw~G~d  365 (525)
T KOG1225|consen  308 DCSIRRCPADCSGHGKCIDGECLCDEGYTGELCIQR-------ACSGGGQCVN-----G-C-KCKKGWRGPD  365 (525)
T ss_pred             ccccccCCccCCCCCcccCCceEeCCCCcCCccccc-------ccCCCceecc-----C-c-eeccCccCCC
Confidence            885                   46778888777632       3777777765     4 7 7888888877

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=98.51  E-value=1.8e-07  Score=54.58  Aligned_cols=40  Identities=53%  Similarity=1.288  Sum_probs=33.9

Q ss_pred             CCCcCCCC---CccCCCCeeeCCCCCCCCCCccCCCCcccCCC
Q psy15473        106 CNCNGHAD---ICDAESGRCICQDNTGGDNCERCARGYYGNAL  145 (190)
Q Consensus       106 c~C~~~~~---~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c  145 (190)
                      +.|+.++.   .|+..+|+|.|+++|+|.+|++|++|||+.+-
T Consensus         2 C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~   44 (50)
T cd00055           2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS   44 (50)
T ss_pred             CcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCCC
Confidence            45665554   69888999999999999999999999999753

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=98.37  E-value=5.8e-07  Score=51.44  Aligned_cols=30  Identities=50%  Similarity=1.325  Sum_probs=28.3

Q ss_pred             CCccCCCCeeeCCCCCCCCCCccCCCCccc
Q psy15473        113 DICDAESGRCICQDNTGGDNCERCARGYYG  142 (190)
Q Consensus       113 ~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g  142 (190)
                      ..|++.+|+|.|+++|+|.+|++|++||||
T Consensus        11 ~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g   40 (46)
T smart00180       11 GTCDPDTGQCECKPNVTGRRCDRCAPGYYG   40 (46)
T ss_pred             CcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence            478888999999999999999999999999

>KOG1214|consensus

Probab=98.34  E-value=1.8e-06  Score=75.45  Aligned_cols=135  Identities=20%  Similarity=0.540  Sum_probs=86.5

Q ss_pred             cCCCCcccCCCC-CCCCCCcCC--CCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccC-
Q psy15473         18 RCARGYYGNALE-GAVTDCKQC--PCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHE-   93 (190)
Q Consensus        18 ~C~~g~~g~~c~-~~~~~C~~~--~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~-   93 (190)
                      .|..||.|..-. .++++|..+  .|..++.|++.+++        ++|.|..+|.                   |.+. 
T Consensus       719 ecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~--------~rceC~~gy~-------------------F~dd~  771 (1289)
T KOG1214|consen  719 ECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGS--------YRCECRSGYE-------------------FADDR  771 (1289)
T ss_pred             EEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCc--------eeEEEeecce-------------------eccCC
Confidence            477777765322 345688765  59999999998876        4566655542                   1111 


Q ss_pred             -CCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCC-CCCCCccCCCCcccCCCC-CCCCCCcCCCCCCCCCceecCCCC
Q psy15473         94 -PTSGGAFSRCVPCNCNGHADICDAESGRCICQDNT-GGDNCERCARGYYGNALE-GAVTDCKQCPCPNQGPCVQLDDDQ  170 (190)
Q Consensus        94 -~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~-~G~~C~~C~~G~~g~~c~-~~~~~C~~~~C~~~g~C~~~~~~~  170 (190)
                       .|.. ..+.=.+..|......|.. .+++.|...= .-..| +|+|||.|+.-. .+.++|.+..|+..++|+... ++
T Consensus       772 ~tCV~-i~~pap~n~Ce~g~h~C~i-~g~a~c~~hGgs~y~C-~CLPGfsGDG~~c~dvDeC~psrChp~A~Cyntp-gs  847 (1289)
T KOG1214|consen  772 HTCVL-ITPPAPANPCEDGSHTCAI-AGQARCVHHGGSTYSC-ACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTP-GS  847 (1289)
T ss_pred             cceEE-ecCCCCCCccccCccccCc-CCceEEEecCCceEEE-eecCCccCCccccccccccCccccCCCceEecCC-Cc
Confidence             0100 0011122345433346643 5677666433 33466 799999887533 355889999999999999876 77


Q ss_pred             eeeCCCCCCCCCCC
Q psy15473        171 VVCSECPRGYGGEK  184 (190)
Q Consensus       171 ~~C~~C~~G~~G~~  184 (190)
                      +.| .|++||.|.-
T Consensus       848 fsC-~C~pGy~GDG  860 (1289)
T KOG1214|consen  848 FSC-RCQPGYYGDG  860 (1289)
T ss_pred             cee-ecccCccCCC
Confidence            999 9999999864

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=98.32  E-value=1.9e-07  Score=54.22  Aligned_cols=33  Identities=36%  Similarity=1.097  Sum_probs=28.6

Q ss_pred             CCccCCCCeeeCCCCCCCCCCccCCCCcccCCC
Q psy15473        113 DICDAESGRCICQDNTGGDNCERCARGYYGNAL  145 (190)
Q Consensus       113 ~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c  145 (190)
                      ..|++.+|+|.|+++|+|.+|++|+++||+.+.
T Consensus        11 ~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~   43 (49)
T PF00053_consen   11 QTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS   43 (49)
T ss_dssp             SSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred             CcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence            589889999999999999999999999999764

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=98.07  E-value=5.4e-06  Score=48.27  Aligned_cols=29  Identities=45%  Similarity=0.980  Sum_probs=26.1

Q ss_pred             CCceeecCCCCCCCCCccCCCCcccCCCC
Q psy15473          1 MFRRCICQDNTGGDNCERCARGYYGNALE   29 (190)
Q Consensus         1 ~~~~C~C~~g~~G~~C~~C~~g~~g~~c~   29 (190)
                      .+|+|.|+++|+|++|++|++||++....
T Consensus        17 ~~G~C~C~~~~~G~~C~~C~~g~~~~~~~   45 (50)
T cd00055          17 GTGQCECKPNTTGRRCDRCAPGYYGLPSQ   45 (50)
T ss_pred             CCCEEeCCCcCCCCCCCCCCCCCccCCCC
Confidence            36899999999999999999999998653

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.03  E-value=1.8e-06  Score=45.41  Aligned_cols=32  Identities=44%  Similarity=1.169  Sum_probs=27.2

Q ss_pred             CcCCCCCCCCCceecCCCCeeeCCCCCCCCCCC
Q psy15473        152 CKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK  184 (190)
Q Consensus       152 C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~  184 (190)
                      |.+.+|.++|+|++.....++| .|++||+|++
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C-~C~~G~~G~~   32 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTC-ECPPGYTGKR   32 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEE-EEBTTEESTT
T ss_pred             CCCCcCCCCeEEEeCCCCCEEe-ECCCCCccCC
Confidence            4566999999999876566999 9999999975

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=98.02  E-value=4.5e-06  Score=47.70  Aligned_cols=25  Identities=48%  Similarity=1.151  Sum_probs=23.6

Q ss_pred             CCceeecCCCCCCCCCccCCCCccc
Q psy15473          1 MFRRCICQDNTGGDNCERCARGYYG   25 (190)
Q Consensus         1 ~~~~C~C~~g~~G~~C~~C~~g~~g   25 (190)
                      ++|+|.|+++|+|++|++|++||||
T Consensus        16 ~~G~C~C~~~~~G~~C~~C~~g~~g   40 (46)
T smart00180       16 DTGQCECKPNVTGRRCDRCAPGYYG   40 (46)
T ss_pred             CCCEEECCCCCCCCCCCcCCCCcCC
Confidence            3689999999999999999999998

>KOG4260|consensus

Probab=98.02  E-value=1.1e-05  Score=62.31  Aligned_cols=135  Identities=24%  Similarity=0.574  Sum_probs=77.5

Q ss_pred             cCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccC
Q psy15473          7 CQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQ   86 (190)
Q Consensus         7 C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C   86 (190)
                      |++|+.|++|..|+-|.             .-||..+|.|.....     ......|.|.++|+|+.|         .+|
T Consensus       132 Cp~gtyGpdCl~Cpggs-------------er~C~GnG~C~GdGs-----R~GsGkCkC~~GY~Gp~C---------~~C  184 (350)
T KOG4260|consen  132 CPDGTYGPDCLQCPGGS-------------ERPCFGNGSCHGDGS-----REGSGKCKCETGYTGPLC---------RYC  184 (350)
T ss_pred             cCCCCcCCccccCCCCC-------------cCCcCCCCcccCCCC-----CCCCCcccccCCCCCccc---------ccc
Confidence            44555555555554442             246777787754321     223468999999999887         458


Q ss_pred             CCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCC-CCCCCCc--CCCCCCCCCc
Q psy15473         87 LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE-GAVTDCK--QCPCPNQGPC  163 (190)
Q Consensus        87 ~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~-~~~~~C~--~~~C~~~g~C  163 (190)
                      -++|+-..... ..-.|..|  ..   .|.   +.  | .+-....|.+|+.||.=+.-. .++++|.  +.+|...-.|
T Consensus       185 g~eyfes~Rne-~~lvCt~C--h~---~C~---~~--C-sg~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfC  252 (350)
T KOG4260|consen  185 GIEYFESSRNE-QHLVCTAC--HE---GCL---GV--C-SGESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFC  252 (350)
T ss_pred             chHHHHhhccc-ccchhhhh--hh---hhh---cc--c-CCCCCCChhhhcccceecccccccHHHHhcCCCCCChhhee
Confidence            88888654321 01223322  10   111   01  1 122234566777777543211 2566775  5677777788


Q ss_pred             eecCCCCeeeCCCCCCCCC
Q psy15473        164 VQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       164 ~~~~~~~~~C~~C~~G~~G  182 (190)
                      ++.. ++|.| ..++||.+
T Consensus       253 vNte-GSf~C-~dk~Gy~~  269 (350)
T KOG4260|consen  253 VNTE-GSFKC-EDKEGYKK  269 (350)
T ss_pred             ecCC-CceEe-cccccccC
Confidence            8865 77999 78999876

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=97.92  E-value=3.9e-06  Score=48.64  Aligned_cols=28  Identities=32%  Similarity=0.940  Sum_probs=23.8

Q ss_pred             CCceeecCCCCCCCCCccCCCCcccCCC
Q psy15473          1 MFRRCICQDNTGGDNCERCARGYYGNAL   28 (190)
Q Consensus         1 ~~~~C~C~~g~~G~~C~~C~~g~~g~~c   28 (190)
                      ++|+|+|+++|+|++|++|++|||+...
T Consensus        16 ~~G~C~C~~~~~G~~C~~C~~g~~~~~~   43 (49)
T PF00053_consen   16 STGQCVCKPGTTGPRCDQCKPGYFGLPS   43 (49)
T ss_dssp             TCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred             CCCEEeccccccCCcCcCCCCccccccC
Confidence            4789999999999999999999999865

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>KOG1217|consensus

Probab=97.91  E-value=0.00013  Score=61.29  Aligned_cols=142  Identities=24%  Similarity=0.538  Sum_probs=84.4

Q ss_pred             cCCCCcccCCCCCCCCCCc--CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCc-----cccCCCccCCCCc
Q psy15473         18 RCARGYYGNALEGAVTDCK--QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGL-----ALTRQTHYQLTGY   90 (190)
Q Consensus        18 ~C~~g~~g~~c~~~~~~C~--~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~-----~~~~~~~~C~~G~   90 (190)
                      .|..||.+..+....++|.  ..+|.++++|.+....        +.|.|..+|.+..++..     ........+.+++
T Consensus       155 ~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~--------~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~  226 (487)
T KOG1217|consen  155 SCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGS--------YLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGA  226 (487)
T ss_pred             eeCCCcccccccccccccccCCCCcCCCcccccCCCC--------eeEeCCCCccCCcCcCCCCCceEecceeccCCCCC
Confidence            4666666666665546777  4468888888887654        57889989888766533     1111113456666


Q ss_pred             ccCCCCCCCCCCcccCCCcCCCCCccCCC--CeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCC-CCCCCCceecC
Q psy15473         91 HHEPTSGGAFSRCVPCNCNGHADICDAES--GRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCP-CPNQGPCVQLD  167 (190)
Q Consensus        91 ~g~~~~~~~~~~C~~c~C~~~~~~C~~~~--g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~-C~~~g~C~~~~  167 (190)
                      .+..+.. ....|..-    . ..|....  ..|.++++|.+..+          ....+++.|.... |.++++|+...
T Consensus       227 ~~~~c~~-~~~~~~~~----~-~~c~~~~~~~~C~~~~g~~~~~~----------~~~~~~~~C~~~~~c~~~~~C~~~~  290 (487)
T KOG1217|consen  227 RGPECEV-SIVECASG----D-GTCVNTVGSYTCRCPEGYTGDAC----------VTCVDVDSCALIASCPNGGTCVNVP  290 (487)
T ss_pred             CCCCccc-ccccccCC----C-CcccccCCceeeeCCCCcccccc----------ceeeeccccCCCCccCCCCeeecCC
Confidence            6655542 11222211    1 1332221  24555555444432          0123446677653 88899999875


Q ss_pred             CCCeeeCCCCCCCCCCCC
Q psy15473        168 DDQVVCSECPRGYGGEKM  185 (190)
Q Consensus       168 ~~~~~C~~C~~G~~G~~C  185 (190)
                       +.+.| .|++||.|..|
T Consensus       291 -~~~~C-~C~~g~~g~~~  306 (487)
T KOG1217|consen  291 -GSYRC-TCPPGFTGRLC  306 (487)
T ss_pred             -Cccee-eCCCCCCCCCC
Confidence             44899 89999999997

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.61  E-value=8.4e-05  Score=40.39  Aligned_cols=36  Identities=39%  Similarity=0.981  Sum_probs=29.3

Q ss_pred             CCCCcC-CCCCCCCCceecCCCCeeeCCCCCCCC-CCCCC
Q psy15473        149 VTDCKQ-CPCPNQGPCVQLDDDQVVCSECPRGYG-GEKMS  186 (190)
Q Consensus       149 ~~~C~~-~~C~~~g~C~~~~~~~~~C~~C~~G~~-G~~C~  186 (190)
                      +++|.. .+|.++++|++.. +.+.| .|++||. |.+|+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~-g~~~C-~C~~g~~~g~~C~   39 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTV-GSYRC-ECPPGYTDGRNCE   39 (39)
T ss_pred             cccCcCCCCcCCCCEeECCC-CCeEe-ECCCCCccCCcCC
Confidence            355766 6898889999875 56999 8999999 98885

>KOG1217|consensus

Probab=97.48  E-value=0.0016  Score=54.65  Aligned_cols=56  Identities=32%  Similarity=0.840  Sum_probs=36.6

Q ss_pred             CCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCC
Q psy15473        126 DNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE  183 (190)
Q Consensus       126 ~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~  183 (190)
                      ..+....| .|..+|.|..|+...++|...++..++.|.....+.+.| .|+.+|.+.
T Consensus       334 ~~~~~~~C-~c~~~~~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c-~~~~~~~~~  389 (487)
T KOG1217|consen  334 GSFGGFRC-ACGPGFTGRRCEDSNDECASSPCCPGGTCVNETPGSYRC-ACPAGFAGK  389 (487)
T ss_pred             CCCCCCCc-CCCCCCCCCccccCCccccCCccccCCEeccCCCCCeEe-cCCCccccC
Confidence            33444445 455566666665332467777788889998732356899 899998874

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.32  E-value=0.00032  Score=37.59  Aligned_cols=35  Identities=37%  Similarity=0.947  Sum_probs=28.0

Q ss_pred             CCCcC-CCCCCCCCceecCCCCeeeCCCCCCCCCCCCC
Q psy15473        150 TDCKQ-CPCPNQGPCVQLDDDQVVCSECPRGYGGEKMS  186 (190)
Q Consensus       150 ~~C~~-~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~  186 (190)
                      ++|.. .+|.++++|.+.. +.+.| .|++||.|.+|+
T Consensus         3 ~~C~~~~~C~~~~~C~~~~-~~~~C-~C~~g~~g~~C~   38 (38)
T cd00054           3 DECASGNPCQNGGTCVNTV-GSYRC-SCPPGYTGRNCE   38 (38)
T ss_pred             ccCCCCCCcCCCCEeECCC-CCeEe-ECCCCCcCCcCC
Confidence            45665 6788888998765 55899 899999998874

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.21  E-value=0.00023  Score=37.23  Aligned_cols=31  Identities=26%  Similarity=0.636  Sum_probs=23.3

Q ss_pred             CcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCC
Q psy15473         35 CKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGN   72 (190)
Q Consensus        35 C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~   72 (190)
                      |.+.||+|+|+|++....       .+.|.|+++|.|.
T Consensus         1 C~~~~C~n~g~C~~~~~~-------~y~C~C~~G~~G~   31 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGG-------GYTCECPPGYTGK   31 (32)
T ss_dssp             TTTTSSTTTEEEEEESTS-------EEEEEEBTTEEST
T ss_pred             CCCCcCCCCeEEEeCCCC-------CEEeECCCCCccC
Confidence            567799999999998722       2678887777663

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>KOG4260|consensus

Probab=97.21  E-value=0.00025  Score=54.90  Aligned_cols=26  Identities=23%  Similarity=0.703  Sum_probs=23.1

Q ss_pred             CceeecCCCCCCCCCccCCCCcccCC
Q psy15473          2 FRRCICQDNTGGDNCERCARGYYGNA   27 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~~C~~g~~g~~   27 (190)
                      +|.|.|..||+|+.|..|-++|+-..
T Consensus       167 sGkCkC~~GY~Gp~C~~Cg~eyfes~  192 (350)
T KOG4260|consen  167 SGKCKCETGYTGPLCRYCGIEYFESS  192 (350)
T ss_pred             CCcccccCCCCCccccccchHHHHhh
Confidence            57899999999999999999998543

>KOG3509|consensus

Probab=97.15  E-value=0.0058  Score=55.53  Aligned_cols=136  Identities=27%  Similarity=0.588  Sum_probs=78.9

Q ss_pred             CceeecCCCCCCCCCccCCCCcccCCCC-CCCCCCcCCCCCCCCC-ceecCCcccccCCCceeEeecCCCCCCCCCCccc
Q psy15473          2 FRRCICQDNTGGDNCERCARGYYGNALE-GAVTDCKQCPCPNQGP-CVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLAL   79 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~~C~~g~~g~~c~-~~~~~C~~~~C~~~g~-C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~   79 (190)
                      +.+|+|+.++.|..|+.|.++|.-.... .....+..+.|..|+. |.+...         ..-.|...+.         
T Consensus       717 ~~~C~c~~g~~G~~ce~c~e~~~ls~t~~~~~~~~~~c~~~~h~~~c~~~~~---------~nt~~q~~~~---------  778 (964)
T KOG3509|consen  717 VEQCQCPKGLVGTSCEDCAEGYTLSTTGGLYPGLCEDCECNSHISQCEDDLG---------YNTDCQNNTE---------  778 (964)
T ss_pred             ccccccCccccCcccccccccccccccCCcCcccCcccccCCCccccccccc---------ccccccccCc---------
Confidence            3579999999999999999998755422 1233455677776654 332211         0111222222         


Q ss_pred             cCCCccCCCCcccCCCCCCCCCCccc-----CCCcCCCCC---ccCCCCee-eCCCCCCCCCCccCCCCcccCCCCCCCC
Q psy15473         80 TRQTHYQLTGYHHEPTSGGAFSRCVP-----CNCNGHADI---CDAESGRC-ICQDNTGGDNCERCARGYYGNALEGAVT  150 (190)
Q Consensus        80 ~~~~~~C~~G~~g~~~~~~~~~~C~~-----c~C~~~~~~---C~~~~g~C-~C~~g~~G~~C~~C~~G~~g~~c~~~~~  150 (190)
                      ...+.+|.+||+++...... ..+.+     -+++.+.-.   ++...-.| .|.++++|..|+.+.++|++...+....
T Consensus       779 ~~~~~~~~~g~~~da~~g~~-~D~~p~~~l~~~~~~~~r~~l~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~atdgS~~  857 (964)
T KOG3509|consen  779 GDRCELCSPGTYGDARRGTP-EDCRPATALTIQCSCNNRSPLSCDGFGPGCLLCPHNTEGTTCERVKAGYYGFATDGSPY  857 (964)
T ss_pred             cceeeecCCCccccCccCCc-ccCCccchhhhhhhhcccCccccccCCCCcccCCCCccccchhhhccccccccCcCCcc
Confidence            23356799999987643321 22222     111111111   11112256 5899999999999999999987665444


Q ss_pred             CCcCCC
Q psy15473        151 DCKQCP  156 (190)
Q Consensus       151 ~C~~~~  156 (190)
                      .+.+..
T Consensus       858 ~~~~~~  863 (964)
T KOG3509|consen  858 DCSPCL  863 (964)
T ss_pred             cccccc
Confidence            444433

>KOG1226|consensus

Probab=96.79  E-value=0.0016  Score=57.08  Aligned_cols=89  Identities=20%  Similarity=0.499  Sum_probs=48.6

Q ss_pred             ccCCCCcccCCCCCCCCCCccc----CCCcCCC--CCccCC----CCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCc
Q psy15473         84 HYQLTGYHHEPTSGGAFSRCVP----CNCNGHA--DICDAE----SGRCICQDNTGGDNCERCARGYYGNALEGAVTDCK  153 (190)
Q Consensus        84 ~~C~~G~~g~~~~~~~~~~C~~----c~C~~~~--~~C~~~----~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~  153 (190)
                      ..|.+||.|+.|+... +.=.+    ..|....  ..|...    -|+|.|.+...|        -+||..|+-+--.|.
T Consensus       480 C~C~~G~~G~~CEC~~-~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~--------~i~G~fCECDnfsC~  550 (783)
T KOG1226|consen  480 CRCDEGWLGKKCECST-DELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNG--------KIYGKFCECDNFSCE  550 (783)
T ss_pred             eecCCCCCCCcccCCc-cccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCC--------ceeeeeeeccCcccc
Confidence            4588999999886421 10010    1132221  134321    134444433331        245666663333344


Q ss_pred             CC---CCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        154 QC---PCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       154 ~~---~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ..   -|..+|.|.-     ++| .|.+||+|..|+-
T Consensus       551 r~~g~lC~g~G~C~C-----G~C-vC~~GwtG~~C~C  581 (783)
T KOG1226|consen  551 RHKGVLCGGHGRCEC-----GRC-VCNPGWTGSACNC  581 (783)
T ss_pred             cccCcccCCCCeEeC-----CcE-EcCCCCccCCCCC
Confidence            32   3777888866     689 9999999999863

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.72  E-value=0.0012  Score=34.46  Aligned_cols=26  Identities=35%  Similarity=0.783  Sum_probs=22.3

Q ss_pred             CCCCCCCceecCCCCeeeCCCCCCCCCCCC
Q psy15473        156 PCPNQGPCVQLDDDQVVCSECPRGYGGEKM  185 (190)
Q Consensus       156 ~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C  185 (190)
                      .|.++|+|+...   ++| .|.+||+|+.|
T Consensus         7 ~C~~~G~C~~~~---g~C-~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHGTCVSPC---GRC-VCDSGYTGPDC   32 (32)
T ss_pred             ccCCCCEEeCCC---CEE-ECCCCCcCCCC
Confidence            588999998753   799 99999999886

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.67  E-value=0.0024  Score=33.49  Aligned_cols=31  Identities=39%  Similarity=0.946  Sum_probs=25.0

Q ss_pred             CCCCCCCCCceecCCCCeeeCCCCCCCCCC-CCC
Q psy15473        154 QCPCPNQGPCVQLDDDQVVCSECPRGYGGE-KMS  186 (190)
Q Consensus       154 ~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~-~C~  186 (190)
                      ..+|.+++.|++.. +.++| .|+.||.|. .|+
T Consensus         5 ~~~C~~~~~C~~~~-~~~~C-~C~~g~~g~~~C~   36 (36)
T cd00053           5 SNPCSNGGTCVNTP-GSYRC-VCPPGYTGDRSCE   36 (36)
T ss_pred             CCCCCCCCEEecCC-CCeEe-ECCCCCcccCCcC
Confidence            45787889998876 55999 999999998 653

>smart00051 DSL delta serrate ligand

Probab=96.56  E-value=0.0037  Score=38.06  Aligned_cols=43  Identities=28%  Similarity=0.440  Sum_probs=29.8

Q ss_pred             cCCCCcccCCCCCCCCCCcccC-CCcCCCCCccCCCCeeeCCCCCCCCCC
Q psy15473         85 YQLTGYHHEPTSGGAFSRCVPC-NCNGHADICDAESGRCICQDNTGGDNC  133 (190)
Q Consensus        85 ~C~~G~~g~~~~~~~~~~C~~c-~C~~~~~~C~~~~g~C~C~~g~~G~~C  133 (190)
                      .|.++|+|..|+    ..|.+- ....+ -.|++ .|.++|.+||.|..|
T Consensus        20 ~C~~~~yG~~C~----~~C~~~~d~~~~-~~Cd~-~G~~~C~~Gw~G~~C   63 (63)
T smart00051       20 TCDENYYGEGCN----KFCRPRDDFFGH-YTCDE-NGNKGCLEGWMGPYC   63 (63)
T ss_pred             eCCCCCcCCccC----CEeCcCccccCC-ccCCc-CCCEecCCCCcCCCC
Confidence            378888988875    345432 12323 37887 699999999999876

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.53  E-value=0.00084  Score=27.68  Aligned_cols=13  Identities=38%  Similarity=0.948  Sum_probs=9.3

Q ss_pred             eeecCCCCCCCCC
Q psy15473          4 RCICQDNTGGDNC   16 (190)
Q Consensus         4 ~C~C~~g~~G~~C   16 (190)
                      .|+|++||+|++|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            4788888888876

>KOG3509|consensus

Probab=96.51  E-value=0.0083  Score=54.57  Aligned_cols=118  Identities=31%  Similarity=0.573  Sum_probs=76.1

Q ss_pred             eEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCee-eCCCCCCCCCCccCCCCc
Q psy15473         62 RIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRC-ICQDNTGGDNCERCARGY  140 (190)
Q Consensus        62 ~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C-~C~~g~~G~~C~~C~~G~  140 (190)
                      .|.|+.++.|.+|         ..|.++|.-..........+..+.|..|+..|....+.+ .|+.++.|.+|+.|.+||
T Consensus       719 ~C~c~~g~~G~~c---------e~c~e~~~ls~t~~~~~~~~~~c~~~~h~~~c~~~~~~nt~~q~~~~~~~~~~~~~g~  789 (964)
T KOG3509|consen  719 QCQCPKGLVGTSC---------EDCAEGYTLSTTGGLYPGLCEDCECNSHISQCEDDLGYNTDCQNNTEGDRCELCSPGT  789 (964)
T ss_pred             ccccCccccCccc---------ccccccccccccCCcCcccCcccccCCCcccccccccccccccccCccceeeecCCCc
Confidence            4556666666554         345555553332222334566677888888898878888 699999999999999999


Q ss_pred             ccCCCCCCCCCCcC-C----C--CCCCCCceecCCCCeeeCCCCCCCCCCCCCCCC
Q psy15473        141 YGNALEGAVTDCKQ-C----P--CPNQGPCVQLDDDQVVCSECPRGYGGEKMSPGA  189 (190)
Q Consensus       141 ~g~~c~~~~~~C~~-~----~--C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~c~  189 (190)
                      +++.-...+.++.+ .    +  +.+. +..........|.-|+++++|.+|++++
T Consensus       790 ~~da~~g~~~D~~p~~~l~~~~~~~~r-~~l~~~~~~~~~~~~p~~~~g~~~~~~~  844 (964)
T KOG3509|consen  790 YGDARRGTPEDCRPATALTIQCSCNNR-SPLSCDGFGPGCLLCPHNTEGTTCERVK  844 (964)
T ss_pred             cccCccCCcccCCccchhhhhhhhccc-CccccccCCCCcccCCCCccccchhhhc
Confidence            99876654444544 1    1  1111 1122222335676789999999998764

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.47  E-value=0.0038  Score=32.91  Aligned_cols=32  Identities=34%  Similarity=1.012  Sum_probs=24.4

Q ss_pred             CcC-CCCCCCCCceecCCCCeeeCCCCCCCCC-CCCC
Q psy15473        152 CKQ-CPCPNQGPCVQLDDDQVVCSECPRGYGG-EKMS  186 (190)
Q Consensus       152 C~~-~~C~~~g~C~~~~~~~~~C~~C~~G~~G-~~C~  186 (190)
                      |.. .+|.++ .|++.. +.++| .|++||.| ..|+
T Consensus         2 C~~~~~C~~~-~C~~~~-~~~~C-~C~~g~~g~~~C~   35 (35)
T smart00181        2 CASGGPCSNG-TCINTP-GSYTC-SCPPGYTGDKRCE   35 (35)
T ss_pred             CCCcCCCCCC-EEECCC-CCeEe-ECCCCCccCCccC
Confidence            344 578777 888774 66999 99999999 6664

>smart00051 DSL delta serrate ligand

Probab=96.45  E-value=0.0036  Score=38.14  Aligned_cols=43  Identities=21%  Similarity=0.442  Sum_probs=28.8

Q ss_pred             cCCCCcccCCCCCCCCCCcC-CCCCCCCCceecCCCCeeeCCCCCCCCCCCC
Q psy15473        135 RCARGYYGNALEGAVTDCKQ-CPCPNQGPCVQLDDDQVVCSECPRGYGGEKM  185 (190)
Q Consensus       135 ~C~~G~~g~~c~~~~~~C~~-~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C  185 (190)
                      .|.++|||..|+   ..|.+ .....+.+|.. .   +.+ .|++||.|+.|
T Consensus        20 ~C~~~~yG~~C~---~~C~~~~d~~~~~~Cd~-~---G~~-~C~~Gw~G~~C   63 (63)
T smart00051       20 TCDENYYGEGCN---KFCRPRDDFFGHYTCDE-N---GNK-GCLEGWMGPYC   63 (63)
T ss_pred             eCCCCCcCCccC---CEeCcCccccCCccCCc-C---CCE-ecCCCCcCCCC
Confidence            466677777765   23443 23466778854 2   677 89999999886

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.34  E-value=0.0042  Score=32.40  Aligned_cols=26  Identities=38%  Similarity=1.117  Sum_probs=20.9

Q ss_pred             CCcCCCCCccCCCCeeeCCCCCCCCCC
Q psy15473        107 NCNGHADICDAESGRCICQDNTGGDNC  133 (190)
Q Consensus       107 ~C~~~~~~C~~~~g~C~C~~g~~G~~C  133 (190)
                      .|++++ +|+...++|+|.++|.|..|
T Consensus         7 ~C~~~G-~C~~~~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    7 ICSGHG-TCVSPCGRCVCDSGYTGPDC   32 (32)
T ss_pred             ccCCCC-EEeCCCCEEECCCCCcCCCC
Confidence            466666 88776799999999999865

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=96.14  E-value=0.0024  Score=35.49  Aligned_cols=31  Identities=35%  Similarity=1.101  Sum_probs=25.2

Q ss_pred             CCCCcC--CCCCCCCCceecCCCCeeeCCCCCCCC
Q psy15473        149 VTDCKQ--CPCPNQGPCVQLDDDQVVCSECPRGYG  181 (190)
Q Consensus       149 ~~~C~~--~~C~~~g~C~~~~~~~~~C~~C~~G~~  181 (190)
                      +++|..  ..|..+++|++.. |+|+| .|++||.
T Consensus         2 idEC~~~~~~C~~~~~C~N~~-Gsy~C-~C~~Gy~   34 (42)
T PF07645_consen    2 IDECAEGPHNCPENGTCVNTE-GSYSC-SCPPGYE   34 (42)
T ss_dssp             SSTTTTTSSSSSTTSEEEEET-TEEEE-EESTTEE
T ss_pred             ccccCCCCCcCCCCCEEEcCC-CCEEe-eCCCCcE
Confidence            466764  4588889999987 77999 9999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG1214|consensus

Probab=96.02  E-value=0.021  Score=50.94  Aligned_cols=46  Identities=20%  Similarity=0.491  Sum_probs=38.0

Q ss_pred             cCCCCcccCCCC-CCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCC
Q psy15473         18 RCARGYYGNALE-GAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG   71 (190)
Q Consensus        18 ~C~~g~~g~~c~-~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g   71 (190)
                      .|.|||.|+.-. .+.++|.+..|+..+.|++.++.        +.|.|.++|.|
T Consensus       812 ~CLPGfsGDG~~c~dvDeC~psrChp~A~Cyntpgs--------fsC~C~pGy~G  858 (1289)
T KOG1214|consen  812 ACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTPGS--------FSCRCQPGYYG  858 (1289)
T ss_pred             eecCCccCCccccccccccCccccCCCceEecCCCc--------ceeecccCccC
Confidence            699999988655 35689999999999999998865        57888888776

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=95.98  E-value=0.013  Score=31.45  Aligned_cols=31  Identities=26%  Similarity=0.602  Sum_probs=22.0

Q ss_pred             CCCCcC-CCCCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473         32 VTDCKQ-CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG   70 (190)
Q Consensus        32 ~~~C~~-~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~   70 (190)
                      +++|.. .+|.++++|++..+.        +.|.|+.+|.
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~g~--------~~C~C~~g~~   33 (39)
T smart00179        2 IDECASGNPCQNGGTCVNTVGS--------YRCECPPGYT   33 (39)
T ss_pred             cccCcCCCCcCCCCEeECCCCC--------eEeECCCCCc
Confidence            467877 789998899877654        4566666655

>KOG1388|consensus

Probab=95.30  E-value=0.013  Score=43.99  Aligned_cols=77  Identities=34%  Similarity=0.891  Sum_probs=52.9

Q ss_pred             ccCCCcCCCCCccCCCCee-eCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCC-ceecCCCCeeeCCC-CCCC
Q psy15473        104 VPCNCNGHADICDAESGRC-ICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGP-CVQLDDDQVVCSEC-PRGY  180 (190)
Q Consensus       104 ~~c~C~~~~~~C~~~~g~C-~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~-C~~~~~~~~~C~~C-~~G~  180 (190)
                      -.+.|++++ .|.. +..| .|..+.+|..|++|..||+|+.   +-..|.++.|..++. |+...   .+| .| ..|+
T Consensus        50 P~~~cNGh~-~c~t-~~v~~~~~N~~~g~~c~kc~~g~~Gdt---N~g~c~~~~~~g~~~~~~~~~---~~c-~c~~kgv  120 (217)
T KOG1388|consen   50 PLCQCNGHS-DCNT-QHVCWRCENGTTGAHCEKCIVGFYGDT---NGGKCQPCDCNGGASACVTLT---GKC-FCTTKGV  120 (217)
T ss_pred             hHHHhcCCC-Cccc-ceeeeeccCccccccCCceEEEEEecC---CCCccCHhhhcCCeeeeeccC---Ccc-ccccceE
Confidence            345577555 4533 3345 5888999999999999999972   225588887765543 33322   577 77 6799


Q ss_pred             CCCCCCCCC
Q psy15473        181 GGEKMSPGA  189 (190)
Q Consensus       181 ~G~~C~~c~  189 (190)
                      .|.+|+++.
T Consensus       121 vgd~c~~~e  129 (217)
T KOG1388|consen  121 VGDLCPKCE  129 (217)
T ss_pred             ecccCcccc
Confidence            999988763

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=95.05  E-value=0.042  Score=28.95  Aligned_cols=33  Identities=27%  Similarity=0.629  Sum_probs=22.0

Q ss_pred             CCCCcC-CCCCCCCCceecCCcccccCCCceeEeecCCCCCC
Q psy15473         32 VTDCKQ-CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGN   72 (190)
Q Consensus        32 ~~~C~~-~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~   72 (190)
                      +++|.. .+|.+++.|.+..+.        +.|.|+.+|.|.
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~--------~~C~C~~g~~g~   35 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGS--------YRCSCPPGYTGR   35 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCC--------eEeECCCCCcCC
Confidence            356776 689888888876543        456666665553

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG1218|consensus

Probab=94.65  E-value=0.51  Score=37.67  Aligned_cols=13  Identities=23%  Similarity=0.657  Sum_probs=10.3

Q ss_pred             CceeecCCCCCCC
Q psy15473          2 FRRCICQDNTGGD   14 (190)
Q Consensus         2 ~~~C~C~~g~~G~   14 (190)
                      .+.|.|.++|+|.
T Consensus        14 ~~~c~c~~~~~g~   26 (316)
T KOG1218|consen   14 SGQCFCDPGYTGR   26 (316)
T ss_pred             CCceecCCCcccc
Confidence            4678888888885

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=94.20  E-value=0.018  Score=30.88  Aligned_cols=26  Identities=27%  Similarity=0.816  Sum_probs=19.6

Q ss_pred             CCCCCCCceecCCCCeeeCCCCCCCCCC
Q psy15473        156 PCPNQGPCVQLDDDQVVCSECPRGYGGE  183 (190)
Q Consensus       156 ~C~~~g~C~~~~~~~~~C~~C~~G~~G~  183 (190)
                      .|+.+++|.... ++++| .|++||+|.
T Consensus         7 ~C~~nA~C~~~~-~~~~C-~C~~Gy~Gd   32 (36)
T PF12947_consen    7 GCHPNATCTNTG-GSYTC-TCKPGYEGD   32 (36)
T ss_dssp             GS-TTCEEEE-T-TSEEE-EE-CEEECC
T ss_pred             CCCCCcEeecCC-CCEEe-ECCCCCccC
Confidence            477789999886 47999 999999986

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=93.65  E-value=0.062  Score=29.72  Aligned_cols=31  Identities=19%  Similarity=0.607  Sum_probs=22.8

Q ss_pred             CCCCcC--CCCCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473         32 VTDCKQ--CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG   70 (190)
Q Consensus        32 ~~~C~~--~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~   70 (190)
                      +|+|+.  ..|..++.|++..++        +.|.|+++|.
T Consensus         2 idEC~~~~~~C~~~~~C~N~~Gs--------y~C~C~~Gy~   34 (42)
T PF07645_consen    2 IDECAEGPHNCPENGTCVNTEGS--------YSCSCPPGYE   34 (42)
T ss_dssp             SSTTTTTSSSSSTTSEEEEETTE--------EEEEESTTEE
T ss_pred             ccccCCCCCcCCCCCEEEcCCCC--------EEeeCCCCcE
Confidence            567875  368888999999876        5677666654

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG1218|consensus

Probab=93.55  E-value=1.3  Score=35.34  Aligned_cols=56  Identities=23%  Similarity=0.559  Sum_probs=33.0

Q ss_pred             cCCCCcccCCCCCCCCCCccc-CCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCC
Q psy15473         85 YQLTGYHHEPTSGGAFSRCVP-CNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE  146 (190)
Q Consensus        85 ~C~~G~~g~~~~~~~~~~C~~-c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~  146 (190)
                      .|++||.+..+..... .|.. ..+.. +..|+..++.+.+.+.+.+    .|+.+|.+..+.
T Consensus       165 ~c~~g~~g~~~~~~~~-~c~~~~~~~~-g~~C~~~~~~~~~~~~~~~----~~~~~~~~~~~~  221 (316)
T KOG1218|consen  165 TCQPGFVGVFCVESCS-GCSPLTACEN-GAKCNRSTGSCLCYPGPSG----ACKGGFHGCACL  221 (316)
T ss_pred             eccCCcccccccccCC-CcCCCcccCC-CCeeeccccccccCCCCcc----cccCCccCCcCc
Confidence            3888888887754221 1432 33443 2478777777777777765    455555555443

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=92.66  E-value=0.21  Score=25.66  Aligned_cols=28  Identities=29%  Similarity=0.574  Sum_probs=18.6

Q ss_pred             CCCCCCCCCceecCCcccccCCCceeEeecCCCCCC
Q psy15473         37 QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGN   72 (190)
Q Consensus        37 ~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~   72 (190)
                      ..+|.+++.|++....        +.|.|+.+|.|.
T Consensus         5 ~~~C~~~~~C~~~~~~--------~~C~C~~g~~g~   32 (36)
T cd00053           5 SNPCSNGGTCVNTPGS--------YRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCCEEecCCCC--------eEeECCCCCccc
Confidence            5678888888876533        466666666553

>smart00181 EGF Epidermal growth factor-like domain

Probab=90.60  E-value=0.45  Score=24.63  Aligned_cols=28  Identities=21%  Similarity=0.559  Sum_probs=17.8

Q ss_pred             CcC-CCCCCCCCceecCCcccccCCCceeEeecCCCCC
Q psy15473         35 CKQ-CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG   71 (190)
Q Consensus        35 C~~-~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g   71 (190)
                      |.. .+|.++ .|++..+.        +.|.|.++|.|
T Consensus         2 C~~~~~C~~~-~C~~~~~~--------~~C~C~~g~~g   30 (35)
T smart00181        2 CASGGPCSNG-TCINTPGS--------YTCSCPPGYTG   30 (35)
T ss_pred             CCCcCCCCCC-EEECCCCC--------eEeECCCCCcc
Confidence            455 578887 78766433        56666666655

>KOG0196|consensus

Probab=88.15  E-value=0.82  Score=41.32  Aligned_cols=57  Identities=26%  Similarity=0.733  Sum_probs=39.6

Q ss_pred             CCeeeCCCCCC----CCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473        119 SGRCICQDNTG----GDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       119 ~g~C~C~~g~~----G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G  182 (190)
                      .|.|.|++||.    +..|+.|++|||-..-..  ..|.+||-+...    ...++..| .|..||.-
T Consensus       258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~--~~C~~CP~~S~s----~~ega~~C-~C~~gyyR  318 (996)
T KOG0196|consen  258 IGGCVCKAGYEEAENGKACQACPPGTYKASQGD--SLCLPCPPNSHS----SSEGATSC-TCENGYYR  318 (996)
T ss_pred             cCceeecCCCCcccCCCcceeCCCCcccCCCCC--CCCCCCCCCCCC----CCCCCCcc-cccCCccc
Confidence            58999999984    579999999998655321  347776644322    12355788 88888863

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=88.00  E-value=0.19  Score=30.49  Aligned_cols=14  Identities=43%  Similarity=1.004  Sum_probs=5.7

Q ss_pred             eeecCCCCCCCCCc
Q psy15473          4 RCICQDNTGGDNCE   17 (190)
Q Consensus         4 ~C~C~~g~~G~~C~   17 (190)
                      +-+|..+|-|+.|+
T Consensus        18 rv~C~~nyyG~~C~   31 (63)
T PF01414_consen   18 RVVCDENYYGPNCS   31 (63)
T ss_dssp             -----TTEETTTT-
T ss_pred             EEECCCCCCCcccc
Confidence            34566777777776

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>PHA02887 EGF-like protein; Provisional

Probab=87.12  E-value=0.47  Score=32.26  Aligned_cols=29  Identities=34%  Similarity=0.906  Sum_probs=21.8

Q ss_pred             CCCCCCceec-CCCCeeeCCCCCCCCCCCCCC
Q psy15473        157 CPNQGPCVQL-DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       157 C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      |. +|+|.-. +-....| .|..||+|.+|+.
T Consensus        94 Ci-HG~C~yI~dL~epsC-rC~~GYtG~RCE~  123 (126)
T PHA02887         94 CI-NGECMNIIDLDEKFC-ICNKGYTGIRCDE  123 (126)
T ss_pred             ee-CCEEEccccCCCcee-ECCCCcccCCCCc
Confidence            55 4788543 2245899 9999999999985

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=86.63  E-value=0.1  Score=31.77  Aligned_cols=44  Identities=25%  Similarity=0.381  Sum_probs=19.3

Q ss_pred             cCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCC
Q psy15473         85 YQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNC  133 (190)
Q Consensus        85 ~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C  133 (190)
                      .|.+.|+|..|.    ..|.+..=....-+|+. +|.=+|.+||.|+.|
T Consensus        20 ~C~~nyyG~~C~----~~C~~~~d~~ghy~Cd~-~G~~~C~~Gw~G~~C   63 (63)
T PF01414_consen   20 VCDENYYGPNCS----KFCKPRDDSFGHYTCDS-NGNKVCLPGWTGPNC   63 (63)
T ss_dssp             ---TTEETTTT-----EE---EEETTEEEEE-S-S--EEE-TTEESTTS
T ss_pred             ECCCCCCCcccc----CCcCCCcCCcCCcccCC-CCCCCCCCCCcCCCC
Confidence            477888888775    24554320001126764 677777788877765

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=85.14  E-value=0.63  Score=32.21  Aligned_cols=29  Identities=34%  Similarity=0.902  Sum_probs=21.4

Q ss_pred             CCCCCCceec-CCCCeeeCCCCCCCCCCCCCC
Q psy15473        157 CPNQGPCVQL-DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       157 C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      |.+ |+|... +-....| .|..||+|.+||.
T Consensus        53 ClH-G~C~yI~dl~~~~C-rC~~GYtGeRCEh   82 (139)
T PHA03099         53 CLH-GDCIHARDIDGMYC-RCSHGYTGIRCQH   82 (139)
T ss_pred             eEC-CEEEeeccCCCcee-ECCCCcccccccc
Confidence            554 578543 2245899 9999999999985

>KOG0196|consensus

Probab=83.38  E-value=1.9  Score=39.16  Aligned_cols=41  Identities=24%  Similarity=0.706  Sum_probs=29.0

Q ss_pred             CceeecCCCCC----CCCCccCCCCcccCCCCCCCCCCcCCCCCCCC
Q psy15473          2 FRRCICQDNTG----GDNCERCARGYYGNALEGAVTDCKQCPCPNQG   44 (190)
Q Consensus         2 ~~~C~C~~g~~----G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g   44 (190)
                      .|+|.|++||.    |..|+.|++|||=..-  ....|.+||=+.++
T Consensus       258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~--~~~~C~~CP~~S~s  302 (996)
T KOG0196|consen  258 IGGCVCKAGYEEAENGKACQACPPGTYKASQ--GDSLCLPCPPNSHS  302 (996)
T ss_pred             cCceeecCCCCcccCCCcceeCCCCcccCCC--CCCCCCCCCCCCCC
Confidence            47899999994    6889999999985532  12357766655443

>KOG1388|consensus

Probab=83.21  E-value=0.71  Score=34.92  Aligned_cols=53  Identities=30%  Similarity=0.847  Sum_probs=40.1

Q ss_pred             CCCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCC-CCCCCCCCccCC
Q psy15473         81 RQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQ-DNTGGDNCERCA  137 (190)
Q Consensus        81 ~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~-~g~~G~~C~~C~  137 (190)
                      ..+..|..||+|.. .   ...|+++.|.+.+..|...+++|.|+ -++.|..|+.|-
T Consensus        76 ~~c~kc~~g~~Gdt-N---~g~c~~~~~~g~~~~~~~~~~~c~c~~kgvvgd~c~~~e  129 (217)
T KOG1388|consen   76 AHCEKCIVGFYGDT-N---GGKCQPCDCNGGASACVTLTGKCFCTTKGVVGDLCPKCE  129 (217)
T ss_pred             ccCCceEEEEEecC-C---CCccCHhhhcCCeeeeeccCCccccccceEecccCcccc
Confidence            34566899999962 2   25789999998777888889999984 577888887543

>KOG3514|consensus

Probab=80.67  E-value=1.3  Score=41.29  Aligned_cols=37  Identities=30%  Similarity=0.796  Sum_probs=30.8

Q ss_pred             CCcCCCCCCCCCceecCCCCeeeCCCC-CCCCCCCCCCCC
Q psy15473        151 DCKQCPCPNQGPCVQLDDDQVVCSECP-RGYGGEKMSPGA  189 (190)
Q Consensus       151 ~C~~~~C~~~g~C~~~~~~~~~C~~C~-~G~~G~~C~~c~  189 (190)
                      .|.+.||.|+|+|...- ..+.| .|. .+|.|+.||+.|
T Consensus       625 ~C~~nPC~N~g~C~egw-NrfiC-DCs~T~~~G~~CerE~  662 (1591)
T KOG3514|consen  625 ICESNPCQNGGKCSEGW-NRFIC-DCSGTGFEGRTCEREA  662 (1591)
T ss_pred             ccCCCcccCCCCccccc-ccccc-ccccCcccCcccccee
Confidence            58899999999998865 34889 675 699999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
2y38_A	403	Laminin Alpha5 Chain N-Terminal Fragment Length = 4		5e-05
1klo_A	162	Crystal Structure Of Three Consecutive Laminin-Type		2e-04
1klo_A	162	Crystal Structure Of Three Consecutive Laminin-Type		4e-04
1npe_B	164	Crystal Structure Of Nidogen/laminin Complex Length		2e-04
1npe_B	164	Crystal Structure Of Nidogen/laminin Complex Length		5e-04

>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment Length = 403

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 24/121 (19%)
Query: 50  DDDQVSNLGNRTRIRIKSALG---GNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPC 106
           D  + +N+  R  +R  + LG   G   R   +TR+ +Y +     + + GG   RCV  
Sbjct: 218 DFTKATNIRLRF-LRTNTLLGHLMGKALRDPTVTRRYYYSIK----DISIGG---RCV-- 267
Query: 107 NCNGHADICDAESG------RCICQDNTGGDNCERCARGYYGNALEGAVTD----CKQCP 156
            C+GHAD+CDA+        +C CQ NT G +C+RC  G+     + A TD    C+ C 
Sbjct: 268 -CHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCN 326
Query: 157 C 157
           C
Sbjct: 327 C 327

>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type Epidermal Growth Factor-Like (Le) Modules Of Laminin Gamma1 Chain Harboring The Nidogen Binding Site Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 7   CQDNTGGDNCERCARGYYGNAL--EGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIR 64
           C   T G  CE C  GY+G+ L   G V  C+ C C +      +D + V N    T   
Sbjct: 23  CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDN-----IDPNAVGNCNRLTGEC 77
Query: 65  IKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADI-----CDAES 119
           +K       T G    R       G+   P +     +C  C CN +  +     C+  +
Sbjct: 78  LKCIY---NTAGFYCDRCKE----GFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVT 130
Query: 120 GRCICQDNTGGDNCERCARGYY 141
           G+C C  +  G +C  C  GYY
Sbjct: 131 GQCQCLPHVSGRDCGTCDPGYY 152

>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type Epidermal Growth Factor-Like (Le) Modules Of Laminin Gamma1 Chain Harboring The Nidogen Binding Site Length = 162

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 89  GYHHEPT-SGGAFSRCVPCNCNGHADI-----CDAESGRCI-CQDNTGGDNCERCARGYY 141
           GY  +P  S G    C PC CN + D      C+  +G C+ C  NT G  C+RC  G++
Sbjct: 38  GYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFF 97
Query: 142 GNALEGAVTD-CKQCPC 157
           GN L     D CK C C
Sbjct: 98  GNPLAPNPADKCKACAC 114

>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 7   CQDNTGGDNCERCARGYYGNAL--EGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIR 64
           C   T G  CE C  GY+G+ L   G V  C+ C C +      +D + V N    T   
Sbjct: 25  CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDN-----IDPNAVGNCNRLTGEC 79
Query: 65  IKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADI-----CDAES 119
           +K       T G    R       G+   P +     +C  C CN +  +     C+  +
Sbjct: 80  LKCIY---NTAGFYCDRCKE----GFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVT 132
Query: 120 GRCICQDNTGGDNCERCARGYY 141
           G+C C  +  G +C  C  GYY
Sbjct: 133 GQCQCLPHVSGRDCGTCDPGYY 154

>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 89  GYHHEPT-SGGAFSRCVPCNCNGHADI-----CDAESGRCI-CQDNTGGDNCERCARGYY 141
           GY  +P  S G    C PC CN + D      C+  +G C+ C  NT G  C+RC  G++
Sbjct: 40  GYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFF 99
Query: 142 GNALEGAVTD-CKQCPC 157
           GN L     D CK C C
Sbjct: 100 GNPLAPNPADKCKACAC 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	2e-12
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	2e-09
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	2e-06
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	1e-11
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	6e-11
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	4e-05
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	5e-04
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	9e-10
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	5e-09
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	1e-08
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	2e-04
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	3e-04
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	3e-07
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	5e-07
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-05

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 35/147 (23%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 5   CICQDNTGGDNCERCARGYYGN--ALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTR 62
             C   T G  CE C  GY+G+     G V  C+ C C +        D       NR  
Sbjct: 21  THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNI------DPNAVGNCNRLT 74

Query: 63  IRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGH-----ADICDA 117
                 +    T G            G+   P +     +C  C CN +        C+ 
Sbjct: 75  GECLKCIYN--TAG----FYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNP 128

Query: 118 ESGRCICQDNTGGDNCERCARGYYGNA 144
            +G+C C  +  G +C  C  GYY   
Sbjct: 129 VTGQCQCLPHVSGRDCGTCDPGYYNLQ 155

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 96  SGGAFSRCVPCNCNGHADI-----CDAESGRCI-CQDNTGGDNCERCARGYYGNALEGAV 149
           S G    C PC CN + D      C+  +G C+ C  NT G  C+RC  G++GN L    
Sbjct: 46  SNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNP 105

Query: 150 TD-CKQCPCPNQGPCVQLDDDQVVCSECP 177
            D CK C C   G   Q      V  +C 
Sbjct: 106 ADKCKACACNPYGTVQQQSSCNPVTGQCQ 134

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 106 CNCNGHADIC----DAESGRCICQDNTGGDNCERCARGYYGN--ALEGAVTDCKQCPCPN 159
           C C G +         E     C   T G  CE C  GY+G+     G V  C+ C C +
Sbjct: 1   CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60

Query: 160 QGPCVQLDDDQV---VCSECPRGYGGEK 184
                 + +       C +C     G  
Sbjct: 61  NIDPNAVGNCNRLTGECLKCIYNTAGFY 88

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 61.2 bits (148), Expect = 1e-11
 Identities = 38/187 (20%), Positives = 58/187 (31%), Gaps = 17/187 (9%)

Query: 5   CICQDNTGGDNCERCARGYYGNALEG--AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTR 62
             CQ NT G NCE+C   Y+ +          C+ C C   G       D  ++      
Sbjct: 346 DNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLI 405

Query: 63  IRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADI-----CDA 117
                              +      G++           C  C CN    I     CD+
Sbjct: 406 AGQCRCKLHVEGE------RCDVCKEGFYDLSAEDPY--GCKSCACNPLGTIPGGNPCDS 457

Query: 118 ESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECP 177
           E+G C C+    G  C++C   ++G  L   +  C+ C C   G       +      C 
Sbjct: 458 ETGYCYCKRLVTGQRCDQCLPQHWG--LSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCL 515

Query: 178 RGYGGEK 184
               G +
Sbjct: 516 PHMIGRQ 522

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 59.3 bits (143), Expect = 6e-11
 Identities = 40/194 (20%), Positives = 62/194 (31%), Gaps = 14/194 (7%)

Query: 4   RCICQDNTGGDNCERCARGYYGNALEGAVTD----CKQCPCPNQGPCVQLDDDQVSNLGN 59
            C+C+ NT G NCE C   Y+      A       CK+C C         D       GN
Sbjct: 280 HCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGN 339

Query: 60  RTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTS-------GGAFSRCVPCNCNGHA 112
            +     +       R     +  ++Q         +         A S           
Sbjct: 340 VSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTD 399

Query: 113 DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLD--DDQ 170
                 +G+C C+ +  G+ C+ C  G+Y  + E     CK C C   G     +  D +
Sbjct: 400 FSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPY-GCKSCACNPLGTIPGGNPCDSE 458

Query: 171 VVCSECPRGYGGEK 184
                C R   G++
Sbjct: 459 TGYCYCKRLVTGQR 472

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 15/90 (16%)

Query: 105 PCNCNGHADICDA-----------ESGRCICQDNTGGDNCERCARGYYGNALEGAVTD-- 151
            C C GHA  C               G C+C+ NT G NCE C   Y+      A     
Sbjct: 253 NCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNS 312

Query: 152 --CKQCPCPNQGPCVQLDDDQVVCSECPRG 179
             CK+C C         D    + +    G
Sbjct: 313 NACKKCNCNEHSSSCHFDMAVFLATGNVSG 342

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 20/134 (14%)

Query: 4   RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRI 63
           +C C+ +  G+ C+ C  G+Y  + E     CK C C   G     +             
Sbjct: 408 QCRCKLHVEGERCDVCKEGFYDLSAEDPY-GCKSCACNPLGTIPGGNPCDSETG----YC 462

Query: 64  RIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHA---DICDAESG 120
             K  + G         ++    L  +            C PC+C+      + C  +SG
Sbjct: 463 YCKRLVTG---------QRCDQCLPQHWGLSNDL---DGCRPCDCDLGGALNNSCSEDSG 510

Query: 121 RCICQDNTGGDNCE 134
           +C C  +  G  C 
Sbjct: 511 QCSCLPHMIGRQCN 524

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Length = 338

 Score = 55.7 bits (133), Expect = 9e-10
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 11/69 (15%)

Query: 100 FSRCVPCNCNGHADICDAESGR--CICQDNTGGDNCERCARGYYG---------NALEGA 148
                 C CN HA++C    G   C C+ NT G +C +C + +               G+
Sbjct: 264 IEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGS 323

Query: 149 VTDCKQCPC 157
              C     
Sbjct: 324 PNACAAAGS 332

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 53.6 bits (128), Expect = 5e-09
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 14/99 (14%)

Query: 100 FSRCVPCNCNGHADIC---DAESGRCICQDNTGGDNCERCARGYYGNALEGAVTD----C 152
           F+    C CNGHA  C   + +   C C+ NT G +CE+C   +       A  +    C
Sbjct: 249 FAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASEC 308

Query: 153 KQCPCPNQGP-------CVQLDDDQVVCSECPRGYGGEK 184
             C C  +           +       C+ C     G K
Sbjct: 309 LPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAK 347

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 94  PTSGGAFSRCVPCNCNGHADIC---------DAESGRCI-CQDNTGGDNCERCARGYYGN 143
             +  + S C+PC+CNG +  C             G C  C+DNT G  CERC   ++  
Sbjct: 299 RATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRL 358

Query: 144 ALEGAVTDCKQCPCPNQG 161
              G    C      +  
Sbjct: 359 ---GNTEACSPAAAHHHH 373

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 20/115 (17%)

Query: 3   RRCICQDNTGGDNCERCARGYYGNALEGAVTD----CKQCPCPNQGPCVQLDDDQVSNLG 58
             C C+ NT G +CE+C   +       A  +    C  C C  +      D +   + G
Sbjct: 272 LMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTG 331

Query: 59  NRTRIRIKSALGGNRTRGLALT--RQTHYQLTGYHHEPTSGGAFSRCVPCNCNGH 111
           +          GG+ T     T   +       +     +      C P   + H
Sbjct: 332 H----------GGHCTNCRDNTDGAKCERCRENFFRLGNTEA----CSPAAAHHH 372

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 5   CICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQG 44
             C+DNT G  CERC   ++     G    C      +  
Sbjct: 337 TNCRDNTDGAKCERCRENFFRL---GNTEACSPAAAHHHH 373

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403

 Score = 48.7 bits (115), Expect = 3e-07
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 26/111 (23%)

Query: 100 FSRCVPCNCNGHADICDAESG------RCICQDNTGGDNCERCARGYYGNALEGAVTD-- 151
            S    C C+GHAD+CDA+        +C CQ NT G +C+RC  G+     + A TD  
Sbjct: 260 ISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSA 319

Query: 152 --CKQCPCPNQ----------------GPCVQLDDDQVVCSECPRGYGGEK 184
             C+ C C                        +     VC +C     G  
Sbjct: 320 NECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGIN 370

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403

 Score = 47.9 bits (113), Expect = 5e-07
 Identities = 31/163 (19%), Positives = 48/163 (29%), Gaps = 57/163 (34%)

Query: 4   RCICQDNTGGDNCERCARGYYGNALEGAVTD----CKQCPCPNQGPCVQLDDDQVSNLGN 59
           +C CQ NT G +C+RC  G+     + A TD    C+ C C         D +       
Sbjct: 287 QCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPE------- 339

Query: 60  RTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAES 119
                                                            + + D      
Sbjct: 340 -------------------------------------------VDRREASQNQDNVYQGG 356

Query: 120 GRCI-CQDNTGGDNCERCARGYYGNALE--GAVTDCKQCPCPN 159
           G C+ CQ +T G NCERC  G++    +   +   C+     +
Sbjct: 357 GVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHH 399

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 6/86 (6%)

Query: 100 FSRCVPCNCNGHADICDAESG--RCICQDNTGGDNCERCARGYYGNALEGA----VTDCK 153
                 C CN HA +C  ++    C C+ NT G +C +C + Y G          +    
Sbjct: 291 IKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGA 350

Query: 154 QCPCPNQGPCVQLDDDQVVCSECPRG 179
              C      +  +        C  G
Sbjct: 351 ANACIPSISSIGTNVCDNELLHCQNG 376

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	99.86
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	99.84
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.82
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.7
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.56
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.55
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.52
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.49
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.46
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	99.42
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.39
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	99.36
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.34
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.3
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.27
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	99.17
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.16
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.15
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.13
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.13
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.11
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.1
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	99.07
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	99.02
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.01
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.96
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.92
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	98.91
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.91
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	98.9
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.89
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.83
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.78
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.73
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.65
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.63
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.59
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.54
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.53
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.32
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.19
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.18
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.18
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.16
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.12
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.03
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.01
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	97.97
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.96
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.93
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.91
2vh0_B	134	Activated factor XA light chain; serine protease,	97.91
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.91
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.89
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	97.89
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.87
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	97.84
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.83
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.74
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	97.72
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.65
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	97.6
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.58
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.57
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	97.56
2vh0_B	134	Activated factor XA light chain; serine protease,	97.52
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	97.46
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	97.38
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	97.35
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	97.32
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.28
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	97.27
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	97.24
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	97.16
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.08
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	96.98
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	96.98
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	96.97
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	96.81
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	96.68
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.51
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.28
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	96.27
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.21
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.11
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	95.66
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	95.58
3tbd_A	338	Netrin-G2, laminet-2; laminin N-terminal domain, d	95.48
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	95.34
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	95.16
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.9
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	94.51
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	94.19
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	94.07
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	93.91
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	93.72
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	93.62
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	93.62
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	93.61
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	93.6
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	93.33
3v65_B	386	Low-density lipoprotein receptor-related protein;	92.37
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	91.69
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	91.59
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	91.14
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	90.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	89.64
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	88.45
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	88.16
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	87.04
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	86.49
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	85.95
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	85.58
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	84.86
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	82.12
1szb_A	170	Mannose binding lectin-associated serine protease-	82.01
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	81.5
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	80.59
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	80.33
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	80.13

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=99.86  E-value=1.3e-22  Score=147.10  Aligned_cols=124  Identities=27%  Similarity=0.686  Sum_probs=100.5

Q ss_pred             cee-ecCCCCCCCCCccCCCCcccCCCCC--CCCCCcCCCCCCCC------CceecCCcccccCCCceeEe-ecCCCCCC
Q psy15473          3 RRC-ICQDNTGGDNCERCARGYYGNALEG--AVTDCKQCPCPNQG------PCVQLDDDQVSNLGNRTRIR-IKSALGGN   72 (190)
Q Consensus         3 ~~C-~C~~g~~G~~C~~C~~g~~g~~c~~--~~~~C~~~~C~~~g------~C~~~~~~~~~~~~~~~~c~-c~~~~~g~   72 (190)
                      ++| .|++||+|++||+|++||||..+..  ..+.|++++|++++      +|...          ...|. |+++|.|.
T Consensus        18 ~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~~----------tG~C~~C~~g~~G~   87 (162)
T 1klo_A           18 VVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRL----------TGECLKCIYNTAGF   87 (162)
T ss_dssp             EEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCTT----------TCCBCCBCTTEETT
T ss_pred             EEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccCC----------CCcccCCCCCCcCC
Confidence            579 7999999999999999999987763  34579999999874      33221          14674 88888887


Q ss_pred             CCCCccccCCCccCCCCcccCCCCCCCCCCcccCCCcCCC-----CCccCCCCeeeCCCCCCCCCCccCCCCcccCCC
Q psy15473         73 RTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHA-----DICDAESGRCICQDNTGGDNCERCARGYYGNAL  145 (190)
Q Consensus        73 ~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~-----~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c  145 (190)
                      +|         +.|++||||..+.......|+++.|+..+     ..|++++|+|+|+++|+|.+|++|++||||...
T Consensus        88 ~C---------e~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~tG~C~C~~g~~G~~Cd~C~~g~~g~~~  156 (162)
T 1klo_A           88 YC---------DRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQS  156 (162)
T ss_dssp             TT---------CEECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTTTCCCCBCTTEESTTCCEECTTCBCGGG
T ss_pred             Cc---------CcCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCCCCEeECCCCCcCCCCCCCCCCcccCCC
Confidence            76         56999999988753234579999998764     279999999999999999999999999999764

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=99.84  E-value=7.8e-22  Score=143.04  Aligned_cols=134  Identities=29%  Similarity=0.759  Sum_probs=107.8

Q ss_pred             CCCCCCCCceecCCcccccCCCceeE-eecCCCCCCCCCCccccCCCccCCCCcccCCCCC-CCCCCcccCCCcCCC---
Q psy15473         38 CPCPNQGPCVQLDDDQVSNLGNRTRI-RIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSG-GAFSRCVPCNCNGHA---  112 (190)
Q Consensus        38 ~~C~~~g~C~~~~~~~~~~~~~~~~c-~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~-~~~~~C~~c~C~~~~---  112 (190)
                      +||+++++|...+..      ....| .|+++|.|.+|         +.|++||+|.+... .....|++++|+.++   
T Consensus         1 C~C~~~g~C~~~~~~------g~~~C~~C~~g~~G~~C---------e~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~   65 (162)
T 1klo_A            1 CPCPGGSSCAIVPKT------KEVVCTHCPTGTAGKRC---------ELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPN   65 (162)
T ss_dssp             CCSCTTCCEEECSSS------CCEEECSCCTTEESTTS---------CEECTTEEEETTCTTSSCEEEEECCSTTCBCTT
T ss_pred             CcCcCcCcccccCCC------CCEEeCCCCCCCcCCCC---------cCCCCCCcCCcccccCCCCCCeeCcCCCCCCcc
Confidence            589999999876531      12578 69999999777         46999999987642 223579999998764   


Q ss_pred             --CCccCCCCeee-CCCCCCCCCCccCCCCcccCCCC-CCCCCCcCCCCCCCC------CceecCCCCeeeCCCCCCCCC
Q psy15473        113 --DICDAESGRCI-CQDNTGGDNCERCARGYYGNALE-GAVTDCKQCPCPNQG------PCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       113 --~~C~~~~g~C~-C~~g~~G~~C~~C~~G~~g~~c~-~~~~~C~~~~C~~~g------~C~~~~~~~~~C~~C~~G~~G  182 (190)
                        ..|+..+|+|+ |+++|+|.+|++|++||||..+. .....|++++|.+.|      +|+..   +++| .|++||+|
T Consensus        66 ~~~~C~~~tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~~---tG~C-~C~~g~~G  141 (162)
T 1klo_A           66 AVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPV---TGQC-QCLPHVSG  141 (162)
T ss_dssp             CSCCBCTTTCCBCCBCTTEETTTTCEECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCTT---TCCC-CBCTTEES
T ss_pred             cCCcccCCCCcccCCCCCCcCCCcCcCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCCC---CCEe-ECCCCCcC
Confidence              37998999995 99999999999999999999876 334569999998876      67553   3799 99999999


Q ss_pred             CCCCCCCC
Q psy15473        183 EKMSPGAQ  190 (190)
Q Consensus       183 ~~C~~c~~  190 (190)
                      ++|++|++
T Consensus       142 ~~Cd~C~~  149 (162)
T 1klo_A          142 RDCGTCDP  149 (162)
T ss_dssp             TTCCEECT
T ss_pred             CCCCCCCC
Confidence            99999875

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.82  E-value=2.7e-20  Score=157.84  Aligned_cols=181  Identities=22%  Similarity=0.478  Sum_probs=81.9

Q ss_pred             CceeecCCCCCCCCCccCCCCcccCCCCC----CCCCCcCCCCCCCCC-ceecCCcccc--cCCCceeEeecCCCCCCCC
Q psy15473          2 FRRCICQDNTGGDNCERCARGYYGNALEG----AVTDCKQCPCPNQGP-CVQLDDDQVS--NLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~~C~~g~~g~~c~~----~~~~C~~~~C~~~g~-C~~~~~~~~~--~~~~~~~c~c~~~~~g~~c   74 (190)
                      .++|+|++||+|.+|++|.++|++..+..    ..+.+..+.|+.++. |.........  .......+.|..++.|.+|
T Consensus       278 ~g~C~C~~G~~G~~Ce~C~~g~~~~p~~~~~c~~~~~~~~C~C~~~~~~C~~d~~~c~~~~~~~gg~C~~C~~g~~G~~C  357 (525)
T 4aqs_A          278 HGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNC  357 (525)
T ss_dssp             CCEECCCTTEESSSSCEECTTCCSSCCCCCBTTBCCCCCCCCCTTSCSEEEECHHHHHHTTSSCCEEEESCCTTEESTTS
T ss_pred             CccccCcCCCcCCCCcCCCCccCCCccCCCcccCCCcccccccCCCCCCCCCCcccccccCccCCCcccCCCCCCCCCCc
Confidence            57899999999999999999999988763    234556677776654 3211100000  0000011122222222111


Q ss_pred             C------------------------------------------------------CccccCCCccCCCCcccCCCCCCCC
Q psy15473         75 R------------------------------------------------------GLALTRQTHYQLTGYHHEPTSGGAF  100 (190)
Q Consensus        75 ~------------------------------------------------------~~~~~~~~~~C~~G~~g~~~~~~~~  100 (190)
                      +                                                      ....+..++.|++||+|..+..  .
T Consensus       358 e~C~~g~~~~~~~~~~~~~~~~~C~C~~~~~~~~~~C~~~~~~~~~~~~~~C~C~~g~~G~~C~~C~~Gy~G~~c~~--~  435 (525)
T 4aqs_A          358 EQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAED--P  435 (525)
T ss_dssp             CEECTTEEECSSSCTTCTTCEEECCCCTTTBSGGGCCCCSCBGGGTBCSSCCCBCTTEETTTTCEECTTEECCCTTS--T
T ss_pred             ccccCcccccCCCCCCCCCCCcCCCCCCCCCCCCccccCCCCCCcCCCCCccCCCCCCCCCcccCCCCCCcCCCCCC--C
Confidence            1                                                      1111233456888888877652  3


Q ss_pred             CCcccCCCcCCC-----CCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceec-CCCCeeeC
Q psy15473        101 SRCVPCNCNGHA-----DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQL-DDDQVVCS  174 (190)
Q Consensus       101 ~~C~~c~C~~~~-----~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~-~~~~~~C~  174 (190)
                      ..|.+++|...+     ..|+..+|+|.|+++|+|.+|++|++||+|...  +++.|.+++|.++|++... ...+++| 
T Consensus       436 ~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~--~~~~C~~C~C~~~gs~~~~C~~~tG~C-  512 (525)
T 4aqs_A          436 YGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSN--DLDGCRPCDCDLGGALNNSCSEDSGQC-  512 (525)
T ss_dssp             TSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC----------------------------------------
T ss_pred             CCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCC--CCCCCcCCCCCCCCccCCccCCCCCee-
Confidence            568888887543     367778899999999999999999999999753  3467999999998887654 2234789 


Q ss_pred             CCCCCCCCCCCCC
Q psy15473        175 ECPRGYGGEKMSP  187 (190)
Q Consensus       175 ~C~~G~~G~~C~~  187 (190)
                      .|++||+|++||+
T Consensus       513 ~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          513 SCLPHMIGRQCNE  525 (525)
T ss_dssp             -------------
T ss_pred             ECCCCCcCCCCCC
Confidence            9999999999985

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.70  E-value=2.2e-17  Score=136.30  Aligned_cols=132  Identities=22%  Similarity=0.493  Sum_probs=104.0

Q ss_pred             cCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCC
Q psy15473         18 RCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSG   97 (190)
Q Consensus        18 ~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~   97 (190)
                      .|++||+|+.|+.   .|.  ||.++|+|.+..          +.|.|+++|.|..|+.        .|.++|+|..|. 
T Consensus       188 ~C~~g~~G~~C~~---~C~--~C~~~G~C~~~~----------g~C~C~~G~~G~~Ce~--------~C~~g~~g~~C~-  243 (423)
T 2gy5_A          188 RCEAQKWGPECNH---LCT--ACMNNGVCHEDT----------GECICPPGFMGRTCEK--------ACELHTFGRTCK-  243 (423)
T ss_dssp             SSCTTEESTTSCE---ECC--CCCTTCEECTTT----------CCEECCTTEESTTSCE--------ECCTTEESTTSC-
T ss_pred             cCCCCCCCCCCCC---CCC--CCCCCCEEECCC----------CcEeCCCCccCCCccc--------ccCCCCCCCCcC-
Confidence            5899999988764   343  899999997622          5799999999988732        388899998764 


Q ss_pred             CCCCCcc-cCCCcCCCCCccCCCCeeeCCCCCCCCCCcc-CCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCC
Q psy15473         98 GAFSRCV-PCNCNGHADICDAESGRCICQDNTGGDNCER-CARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSE  175 (190)
Q Consensus        98 ~~~~~C~-~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~-C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~  175 (190)
                         ..|. ...|..+ ..|+..+++|.|+++|.|..|+. |.+||+|..|+.      +++|.++|+|+...    .| .
T Consensus       244 ---~~C~~~~~C~~~-g~C~~~~~~C~C~~G~~G~~C~~~C~~G~~G~~C~~------~C~C~ngg~C~~~~----~C-~  308 (423)
T 2gy5_A          244 ---ERCSGQEGCKSY-VFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKL------RCSCNNGEMCDRFQ----GC-L  308 (423)
T ss_dssp             ---EECCSTTTTTTC-CEEETTTTEEECCBTCBSGGGCBCCCTTBCSBTTCC------BCCCTTCCEEETTT----EE-E
T ss_pred             ---ccCCCCCCCCCC-CEECCCCCeEEeCCCcccccccCccCCCCcCCcccc------cccCCCCCEecCCC----ce-E
Confidence               2343 1235533 37877789999999999999996 999999988762      56899999998653    49 9


Q ss_pred             CCCCCCCCCCCCC
Q psy15473        176 CPRGYGGEKMSPG  188 (190)
Q Consensus       176 C~~G~~G~~C~~c  188 (190)
                      |++||+|.+|+++
T Consensus       309 C~~G~~G~~Ce~~  321 (423)
T 2gy5_A          309 CSPGWQGLQCERE  321 (423)
T ss_dssp             CCTTCBSTTSCBC
T ss_pred             CCCCCcCCCCccC
Confidence            9999999999986

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.56  E-value=5.3e-16  Score=113.07  Aligned_cols=135  Identities=24%  Similarity=0.501  Sum_probs=82.2

Q ss_pred             cCCCCcccCCCCCCCCCCcC-CCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccC------------CCc
Q psy15473         18 RCARGYYGNALEGAVTDCKQ-CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTR------------QTH   84 (190)
Q Consensus        18 ~C~~g~~g~~c~~~~~~C~~-~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~------------~~~   84 (190)
                      .|++||+|..|+.   .|.+ .+|.++++|.. .          ..|.|+++|.|..|+......            ...
T Consensus        20 ~C~~g~~G~~C~~---~C~~~~~c~~~g~C~~-~----------g~C~C~~G~~G~~C~~~~C~~~C~~~~g~C~~~~~C   85 (169)
T 2vj2_A           20 TCDDYYYGFGCNK---FCRPRDDFFGHYACDQ-N----------GNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDC   85 (169)
T ss_dssp             -CCTTEETTTTCE---ECCCEEETTEEEEECS-S----------CCEEECTTEESTTSCEECCCTTCCTTTEECSSTTCC
T ss_pred             eCCCcCcCCCccc---ccCCCCCcCCCCEeCC-C----------CeeECCCCCcCCCCCCCCCCCCCCCCCcccCCCCee
Confidence            4555566555542   2443 25666777742 1          467888888887665321111            112


Q ss_pred             cCCCCcccCCCCCCCCCCcccCC-CcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcC-CCCCCCCC
Q psy15473         85 YQLTGYHHEPTSGGAFSRCVPCN-CNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ-CPCPNQGP  162 (190)
Q Consensus        85 ~C~~G~~g~~~~~~~~~~C~~c~-C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~-~~C~~~g~  162 (190)
                      .|++||+|..++.     |...+ |. ++ +|. ..++|            .|++||.|..|+.++++|.. .+|.++|+
T Consensus        86 ~C~~G~~G~~C~~-----C~~~~~C~-~g-~C~-~~~~C------------~C~~G~~G~~C~~~~~~C~~~~~C~~~g~  145 (169)
T 2vj2_A           86 RCQYGWQGLYCDK-----CIPHPGCV-HG-ICN-EPWQC------------LCETNWGGQLCDKDLNYCGTHQPCLNGGT  145 (169)
T ss_dssp             EECTTEESSSSCE-----ECCCTTCS-SE-ECS-STTCC------------EECTTEETTTTCEESCHHHHTCCCCTTCE
T ss_pred             ECCCCCCCCCccc-----CCCCCCCC-CC-CcC-CCCEE------------eCCCCCCCCcccCCCCCCCCCCCCCCCCE
Confidence            4788888877642     33222 33 22 443 12334            45566666666555677874 78999999


Q ss_pred             ceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        163 CVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       163 C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      |+....+.++| .|++||+|.+|+.
T Consensus       146 C~~~~~~~~~C-~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          146 CSNTGPDKYQC-SCPEGYSGPNCEI  169 (169)
T ss_dssp             EEECSTTCEEE-ECCTTCCSTTSCC
T ss_pred             EcCCCCCCcEe-ECCCCCcCcCcCC
Confidence            99863467999 9999999999974

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.55  E-value=1e-14  Score=102.36  Aligned_cols=113  Identities=28%  Similarity=0.669  Sum_probs=78.3

Q ss_pred             CCCCCc--CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccCCC
Q psy15473         31 AVTDCK--QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNC  108 (190)
Q Consensus        31 ~~~~C~--~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C  108 (190)
                      ++++|.  +.||.++++|++..+.        +.|.                     |++||+|..++. .++.|...+|
T Consensus         4 dideC~~~~~~C~~~g~C~~~~g~--------~~C~---------------------C~~Gy~G~~C~~-~~~~C~~~~C   53 (135)
T 2vj3_A            4 DVDECSLGANPCEHAGKCINTLGS--------FECQ---------------------CLQGYTGPRCEI-DVNECVSNPC   53 (135)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSS--------EEEE---------------------CCTTEESTTSCE-ECCTTTTCCC
T ss_pred             ccccccCCCCCCCCCCEeECCCCC--------EEEE---------------------CCCCCcCCcccc-cCccCCCCCC
Confidence            567898  6899999999987654        3454                     555666655542 2466766667


Q ss_pred             cCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCC
Q psy15473        109 NGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMS  186 (190)
Q Consensus       109 ~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~  186 (190)
                      ..++ +|....+         +..| .|++||.|..|+.++++|.+.+|.++|+|++.. +.++| .|++||+|.+|+
T Consensus        54 ~~~~-~C~~~~g---------~~~C-~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~-g~~~C-~C~~G~~G~~C~  118 (135)
T 2vj3_A           54 QNDA-TCLDQIG---------EFQC-ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKI-NEFQC-ECPTGFTGHLCQ  118 (135)
T ss_dssp             CSSC-EEEECSS---------CEEE-ECCTTEESSSSCEECCTTTTCCSTTTCEEEECS-SCEEE-ECCTTEESSSSC
T ss_pred             CCCC-EEeCCCC---------Ccee-eCCCCCcCCcceecCCcccCCCcCCCCEeECCC-CCeEE-ECCCCCcCCccC
Confidence            6443 6654322         2233 345555555555556778888999999999875 66999 999999999996

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.52  E-value=2.5e-14  Score=101.21  Aligned_cols=134  Identities=23%  Similarity=0.516  Sum_probs=82.4

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccCCCcCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHA  112 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~  112 (190)
                      |+|.+.||.++++|++....      ..+.|.|+++|.|..|+....      +...  ...+.  ..+.|.+.+|..++
T Consensus         1 d~C~~~pC~~~g~C~~~~~~------g~~~C~C~~G~~G~~C~~~~~------~~~~--~~~c~--~~~~C~~~~C~~~g   64 (143)
T 4d90_A            1 DICDPNPCENGGICLPGLAD------GSFSCECPDGFTDPNCSSVVE------VASD--EEEPT--SAGPCTPNPCHNGG   64 (143)
T ss_dssp             --CCSCCCGGGCEEEC-----------CCEEECCTTCCTTTTCSCCC------CTTT--TTSCC--CCCTTSSCCCCTTC
T ss_pred             CcCCCCcCCCCCEeeCCCCC------CCEEeECCCCCCCCCCccCcc------cccc--ccccc--cCCcCCCCCCCCCC
Confidence            46889999999999875421      125788888888877654221      1110  01111  23567666676444


Q ss_pred             CCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCCC
Q psy15473        113 DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSPG  188 (190)
Q Consensus       113 ~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~c  188 (190)
                       .|....+.  ......+..| .|++||.|..|+.++++|.+.+|.++++|++.. +.++| .|++||+|++|+.-
T Consensus        65 -~C~~~~~~--~~~~~~~~~C-~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~-g~~~C-~C~~G~~G~~c~~~  134 (143)
T 4d90_A           65 -TCEISEAY--RGDTFIGYVC-KCPRGFNGIHCQHNINECEVEPCKNGGICTDLV-ANYSC-ECPGEFMGRNCQYK  134 (143)
T ss_dssp             -EEEECCCE--ETTEECCEEE-ECCTTEESTTSCEECCTTTTCCSCTTCEEEEET-TEEEE-ECCTTCBSTTSCBC
T ss_pred             -EecCCCcc--ccCCCCCeEe-ECcCCCcCCCcccCCCcCCCCCCCCCCEeECCC-CCeEe-ECCCCCccCCceec
Confidence             55421100  0011123344 456666666666667889988999999999875 66999 99999999999753

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.49  E-value=2.9e-14  Score=113.88  Aligned_cols=132  Identities=23%  Similarity=0.473  Sum_probs=41.5

Q ss_pred             cCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCcccc-----------CCCccC
Q psy15473         18 RCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALT-----------RQTHYQ   86 (190)
Q Consensus        18 ~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~-----------~~~~~C   86 (190)
                      .|++||+|..|+.+  .|.+ +|.++|+|+..           ..|.|+++|.|..|+.....           .....|
T Consensus       168 ~C~~G~~G~~C~~~--~C~~-~C~~~G~C~~~-----------~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~~~~C~C  233 (324)
T 2ygq_A          168 ECPDGFHGPHCEKA--LCTP-RCMNGGLCVTP-----------GFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCIC  233 (324)
T ss_dssp             ECCTTEESSSSCEE--SSSS-CCCTTCEECSS-----------CCEECCTTCBTTTTCBCCCSSCCCSSCCBSCSSCBCC
T ss_pred             ECCCCCcCCCCCCC--CCCC-CCCCCCEEcCC-----------CEEeCCCCccCCCcccCcCCCCCCCCCeeCCCCeeeC
Confidence            57777777776642  4653 78888888641           46888888888776532111           112347


Q ss_pred             CCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceec
Q psy15473         87 LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQL  166 (190)
Q Consensus        87 ~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~  166 (190)
                      ++||+|..|+.   +.|. .+|.+++ .|.. .++|.|++||.|..|+            .  +.|. .+|.++|+|+..
T Consensus       234 ~~G~~G~~C~~---~~C~-~~C~~~g-~C~~-~~~C~C~~G~~G~~C~------------~--~~C~-~~C~~~g~C~~~  292 (324)
T 2ygq_A          234 PPGLEGEQCEI---SKCP-QPCRNGG-KCIG-KSKCKCSKGYQGDLCS------------K--PVCE-PGCGAHGTCHEP  292 (324)
T ss_dssp             CTTCCTTTTC----------------------------------------------------------------------
T ss_pred             CCCccCCCCCc---CcCC-CcCCCCC-EECC-CCEEECCCCCcCCCCc------------C--CCCC-CCCCCCCEECCC
Confidence            78888877753   3443 3455333 5643 3456666666555553            2  2354 368889999862


Q ss_pred             CCCCeeeCCCCCCCCCCCCCCCC
Q psy15473        167 DDDQVVCSECPRGYGGEKMSPGA  189 (190)
Q Consensus       167 ~~~~~~C~~C~~G~~G~~C~~c~  189 (190)
                          ++| .|++||+|.+|++..
T Consensus       293 ----~~C-~C~~G~~G~~C~~~~  310 (324)
T 2ygq_A          293 ----NKC-QCQEGWHGRHCNKRY  310 (324)
T ss_dssp             -----------------------
T ss_pred             ----CEe-ECCCCCcCCCCCCCC
Confidence                799 999999999998754

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.46  E-value=5.1e-14  Score=116.20  Aligned_cols=105  Identities=25%  Similarity=0.519  Sum_probs=82.6

Q ss_pred             CceeecCCCCCCCCCcc-CCCCcccCCCCCCCCCCc-CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccc
Q psy15473          2 FRRCICQDNTGGDNCER-CARGYYGNALEGAVTDCK-QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLAL   79 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~~-C~~g~~g~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~   79 (190)
                      .++|+|++||+|.+|+. |.++|+|..|..   .|. ..+|.+++.|...          .+.|.|+++|.|..|+.   
T Consensus       215 ~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~---~C~~~~~C~~~g~C~~~----------~~~C~C~~G~~G~~C~~---  278 (423)
T 2gy5_A          215 TGECICPPGFMGRTCEKACELHTFGRTCKE---RCSGQEGCKSYVFCLPD----------PYGCSCATGWKGLQCNE---  278 (423)
T ss_dssp             TCCEECCTTEESTTSCEECCTTEESTTSCE---ECCSTTTTTTCCEEETT----------TTEEECCBTCBSGGGCB---
T ss_pred             CCcEeCCCCccCCCcccccCCCCCCCCcCc---cCCCCCCCCCCCEECCC----------CCeEEeCCCcccccccC---
Confidence            47899999999999996 999999988763   455 3467777777532          26899999999987742   


Q ss_pred             cCCCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccC
Q psy15473         80 TRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERC  136 (190)
Q Consensus        80 ~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C  136 (190)
                           .|++||+|..|+.       +++|.+++ .|+...+ |.|+++|+|.+|+.+
T Consensus       279 -----~C~~G~~G~~C~~-------~C~C~ngg-~C~~~~~-C~C~~G~~G~~Ce~~  321 (423)
T 2gy5_A          279 -----ACHPGFYGPDCKL-------RCSCNNGE-MCDRFQG-CLCSPGWQGLQCERE  321 (423)
T ss_dssp             -----CCCTTBCSBTTCC-------BCCCTTCC-EEETTTE-EECCTTCBSTTSCBC
T ss_pred             -----ccCCCCcCCcccc-------cccCCCCC-EecCCCc-eECCCCCcCCCCccC
Confidence                 4999999987752       35687544 8987655 999999999999876

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=99.42  E-value=8e-14  Score=118.16  Aligned_cols=117  Identities=24%  Similarity=0.575  Sum_probs=54.8

Q ss_pred             CceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccC
Q psy15473          2 FRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTR   81 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~   81 (190)
                      .+.|.|.++|.|.+|++|++||+|..++. .+.|.+++|+++++|.+...-.    .....|.|+++|.|..|       
T Consensus       406 ~~~C~C~~g~~G~~C~~C~~Gy~G~~c~~-~~~C~~C~C~~~gtc~~~~~Cd----~~tg~C~C~~g~~G~~C-------  473 (525)
T 4aqs_A          406 AGQCRCKLHVEGERCDVCKEGFYDLSAED-PYGCKSCACNPLGTIPGGNPCD----SETGYCYCKRLVTGQRC-------  473 (525)
T ss_dssp             SSCCCBCTTEETTTTCEECTTEECCCTTS-TTSSEECCCCTTTBCCSSCCBC----TTTCCBCBCTTCCSTTT-------
T ss_pred             CCccCCCCCCCCCcccCCCCCCcCCCCCC-CCCCccCCCCCCceecCCCccc----CCCCEEECCCCCcCCCc-------
Confidence            46799999999999999999999998864 4579999999988876543210    01247899999999776       


Q ss_pred             CCccCCCCcccCCCCCCCCCCcccCCCcCCC---CCccCCCCeeeCCCCCCCCCCcc
Q psy15473         82 QTHYQLTGYHHEPTSGGAFSRCVPCNCNGHA---DICDAESGRCICQDNTGGDNCER  135 (190)
Q Consensus        82 ~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~---~~C~~~~g~C~C~~g~~G~~C~~  135 (190)
                        +.|++||++....   .+.|++++|...+   ..|+..+|+|.|++||+|.+|++
T Consensus       474 --e~C~~G~~g~~~~---~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          474 --DQCLPQHWGLSND---LDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             --CC-----------------------------------------------------
T ss_pred             --ccCCCCccCCCCC---CCCCcCCCCCCCCccCCccCCCCCeeECCCCCcCCCCCC
Confidence              4699999987542   3678888888654   35777788999999999998863

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.39  E-value=2.9e-13  Score=117.27  Aligned_cols=57  Identities=19%  Similarity=0.502  Sum_probs=35.5

Q ss_pred             ceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcC----CCCCCCCCceecCCcccccCCCceeEeec----CCCCCCCC
Q psy15473          3 RRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ----CPCPNQGPCVQLDDDQVSNLGNRTRIRIK----SALGGNRT   74 (190)
Q Consensus         3 ~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~----~~C~~~g~C~~~~~~~~~~~~~~~~c~c~----~~~~g~~c   74 (190)
                      |.|.|.+||+|.+| .+..++++...   .++|..    .+|.++|+|+.            ..|.|+    ++|.|..|
T Consensus       458 G~C~C~~Gy~G~~C-e~~~~~~~~~~---~~~C~~~~~~~~Cs~~G~C~~------------g~C~C~~~~~~Gy~G~~C  521 (690)
T 3fcs_B          458 GVCRCGPGWLGSQC-ECSEEDYRPSQ---QDECSPREGQPVCSQRGECLC------------GQCVCHSSDFGKITGKYC  521 (690)
T ss_dssp             TEEEECTTCCSSSS-CCSCC---------CCCCSSSSSSCGGGGSEEECS------------SSEEECCCSSCCCBSTTS
T ss_pred             CceEeCCCccCCce-eeccCccCCcc---CCcCCCCCCCCCCCCCCEEEC------------CeeEeecCCCCCeeCCCc
Confidence            55778888888877 45555544322   245775    35999999873            358887    77777666


Q ss_pred             C
Q psy15473         75 R   75 (190)
Q Consensus        75 ~   75 (190)
                      +
T Consensus       522 e  522 (690)
T 3fcs_B          522 E  522 (690)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=99.36  E-value=5.5e-13  Score=108.47  Aligned_cols=94  Identities=29%  Similarity=0.709  Sum_probs=68.4

Q ss_pred             CceeecCCCCCCCCCccCCCCcccCCCC----CCCCCCcCCCCCCCCC-ceecCCcccccCCCceeEeecCCCCCCCCCC
Q psy15473          2 FRRCICQDNTGGDNCERCARGYYGNALE----GAVTDCKQCPCPNQGP-CVQLDDDQVSNLGNRTRIRIKSALGGNRTRG   76 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~~C~~g~~g~~c~----~~~~~C~~~~C~~~g~-C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~   76 (190)
                      .++|.|++||+|++||+|++||+|..+.    ...++|++|+|+++++ |......                        
T Consensus       285 ~g~C~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~Cnghs~~C~~d~~~------------------------  340 (403)
T 2y38_A          285 RLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEV------------------------  340 (403)
T ss_dssp             CEEECCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCCTTSCSCEEECHHH------------------------
T ss_pred             ceEeECcCcCcCCCCCCCCccccCCcccccccCCCccccccccCCCCcccccCccc------------------------
Confidence            4679999999999999999999999874    3457899999998875 4321100                        


Q ss_pred             ccccCCCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeee-CCCCCCCCCCccCCCCcccCCCC
Q psy15473         77 LALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCI-CQDNTGGDNCERCARGYYGNALE  146 (190)
Q Consensus        77 ~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~-C~~g~~G~~C~~C~~G~~g~~c~  146 (190)
                                   |. .             ..+...+.+...+|.|. |+++++|.+|++|++||||.+..
T Consensus       341 -------------~~-~-------------~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~GYyg~p~~  384 (403)
T 2y38_A          341 -------------DR-R-------------EASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQ  384 (403)
T ss_dssp             -------------HH-T-------------TCCCCTTSCSCCCEEESSCCSSEESTTSCEECTTCEECTTS
T ss_pred             -------------cc-c-------------cccccccccCCCCCCCCCCcCcCcCCCCCcCCCCccCCCCC
Confidence                         00 0             00011112334578995 99999999999999999998765

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.34  E-value=1.4e-12  Score=112.83  Aligned_cols=117  Identities=19%  Similarity=0.409  Sum_probs=69.3

Q ss_pred             CceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcCC----CCCCCCCceecCCcccccCCCceeEeec------CCCCC
Q psy15473          2 FRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQC----PCPNQGPCVQLDDDQVSNLGNRTRIRIK------SALGG   71 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~----~C~~~g~C~~~~~~~~~~~~~~~~c~c~------~~~~g   71 (190)
                      .+.|.|.+||+|.+|+ |..++++.....  ..|...    +|.++|+|..            ..|.|+      ++|.|
T Consensus       445 ~g~C~C~~Gy~G~~Ce-c~~~~~~~~~~~--~~C~~~~~~~~Cs~~G~C~~------------G~C~C~~~~~~~~G~~G  509 (687)
T 3k6s_B          445 CGICRCDTGYIGKNCE-CQTQGRSSQELE--GSCRKDNNSIICSGLGDCVC------------GQCLCHTSDVPGKLIYG  509 (687)
T ss_dssp             SSSEEECSSEESTTSC-EESSSCCCSGGG--STTSSSTTSCGGGSSEEEET------------TEEEECCCCSTTCCEES
T ss_pred             CCEeEcCCCCcCCccc-ccCCcCCccccC--CCCCCCCCCCcCCCCCEEeC------------CEEEcCCCCCCCCCccc
Confidence            4678888888888886 666655432111  136543    4999999873            368888      77888


Q ss_pred             CCCCC--cccc----------------CCCccCCCCcccCCCCCC-CCCCcccC---CCcCCCCCccCCCCeeeCCCCCC
Q psy15473         72 NRTRG--LALT----------------RQTHYQLTGYHHEPTSGG-AFSRCVPC---NCNGHADICDAESGRCICQDNTG  129 (190)
Q Consensus        72 ~~c~~--~~~~----------------~~~~~C~~G~~g~~~~~~-~~~~C~~c---~C~~~~~~C~~~~g~C~C~~g~~  129 (190)
                      ..|+.  ....                .....|.+||+|..|+.. ....|...   .|.+++ .|..  ++|.|++||+
T Consensus       510 ~~Ce~~~~~C~~~~~~~C~~~~~G~C~~g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G-~C~~--g~C~C~~Gy~  586 (687)
T 3k6s_B          510 QYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRG-RCRC--NVCECHSGYQ  586 (687)
T ss_dssp             TTSCEESSCSCEETTEETSHHHHEEEETTEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSC-CBCS--SCBCCSTTCC
T ss_pred             cccccccccccCCCCcCcCCCCCCeEECCEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCC-cCCC--CEEECCCCCc
Confidence            77651  1110                011246777777777521 13455542   465444 5643  5666666666


Q ss_pred             CCCCccC
Q psy15473        130 GDNCERC  136 (190)
Q Consensus       130 G~~C~~C  136 (190)
                      |..|+.|
T Consensus       587 G~~Ce~c  593 (687)
T 3k6s_B          587 LPLCQEC  593 (687)
T ss_dssp             TTTTCCC
T ss_pred             CCCCCCC
Confidence            6666554

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.30  E-value=5.7e-16  Score=119.28  Aligned_cols=167  Identities=9%  Similarity=-0.063  Sum_probs=101.8

Q ss_pred             ceeecCCCCCCCCCc---------------cCCCC---cccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEe
Q psy15473          3 RRCICQDNTGGDNCE---------------RCARG---YYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIR   64 (190)
Q Consensus         3 ~~C~C~~g~~G~~C~---------------~C~~g---~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~   64 (190)
                      ..|.|+.||+|++||               .|..|   |.|..++.. ++|.+.||+++++|++....        +.|.
T Consensus        53 y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~-~eC~s~pC~ngG~C~~~~~s--------y~C~  123 (267)
T 4fbr_A           53 YNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQN-IVAVSIKSNDGGKTLTGTTT--------YNGE  123 (267)
T ss_dssp             ETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCC-EEEEEEECSSTTSEEEEEEE--------ETTS
T ss_pred             eEEeCCCCcccccccccccccccccCcCCCcccCCCeeeccCccccc-cccCCCCCCCCCEEecCCcc--------EEee
Confidence            457888888888886               24443   345666554 37888888888888876644        6788


Q ss_pred             ecCCCCCCCCCCcccc---------CCCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCC--CCeeeCCCCCCCCCC
Q psy15473         65 IKSALGGNRTRGLALT---------RQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAE--SGRCICQDNTGGDNC  133 (190)
Q Consensus        65 c~~~~~g~~c~~~~~~---------~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~--~g~C~C~~g~~G~~C  133 (190)
                      |+.+|.|..|+.....         ..+..+...|.|.+++..  ..|.+.+|.+++ .|...  +..|.|+++|+|.+|
T Consensus       124 C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~--i~c~~~~c~ngg-~C~dg~~~y~C~Cp~Gf~G~~c  200 (267)
T 4fbr_A          124 GPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQN--VINVDAKSNDGG-KTLSGTMTYNGEGPIGFRGTLT  200 (267)
T ss_dssp             CCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSC--EEEEEEECSSTT-SEEEEEEEETTSCCEEEEEEEE
T ss_pred             CCCCccccCCCCCcccccccCCcCCccccCCcceecccccccc--cccCCCCCCCCC-EeeCCCCCeEEeCCCCcccccc
Confidence            9999999888765432         112222333556666532  234455666444 66532  246888888888877


Q ss_pred             cc---------------CCCC-cccCCCCCCCCC-CcCCCCCCCCCceecCCCCeeeCCCCCCCCCC
Q psy15473        134 ER---------------CARG-YYGNALEGAVTD-CKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE  183 (190)
Q Consensus       134 ~~---------------C~~G-~~g~~c~~~~~~-C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~  183 (190)
                      +.               |..+ .+-..+....+. ....+|.++|+|++.+ .+|+| .||+||+|.
T Consensus       201 ~~~i~ec~~~~~c~~~~c~~gG~~~~~C~~g~n~~~c~~~c~ngGtC~dg~-~sy~C-eCp~GF~G~  265 (267)
T 4fbr_A          201 SPDTYTVENQWGGSTAPWNPGGFWMIGARNGQNVVALNVASSDGGKTLAGT-MIYNG-EGPIGFRAR  265 (267)
T ss_dssp             ETTEEEEEEECSCTTSCCEEEEEEECCCCTTCCEEEEEEECSSTTSEEEEE-EEETT-SCCEEEEEE
T ss_pred             ccccceeccCCCccCCcccCCCeEEEecCCCCccccCCcCCCCCCEeeCCC-cceee-cCCCCcccc
Confidence            61               1111 111111111111 0123788999999976 56999 999999985

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.27  E-value=5.1e-14  Score=104.00  Aligned_cols=137  Identities=18%  Similarity=0.383  Sum_probs=82.7

Q ss_pred             CCCCccCCCCcccC---CCCCCCCCCc----CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCcc
Q psy15473         13 GDNCERCARGYYGN---ALEGAVTDCK----QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHY   85 (190)
Q Consensus        13 G~~C~~C~~g~~g~---~c~~~~~~C~----~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~   85 (190)
                      +..| .|++||+|.   .|+ ++++|.    ..||.++++|++.....   ....+.|.|+++                 
T Consensus        24 ~~~C-~C~~G~~g~~~~~C~-~id~C~~~~~~~~C~~~~~C~~~~~~~---~~g~y~C~C~~G-----------------   81 (186)
T 1z1y_A           24 HFXC-MCNEGLVHLSENTCE-EXNECXXETLGXACGEFGQCIENPDPA---QVNMYXCGCIEG-----------------   81 (186)
T ss_dssp             CEEE-EECTTEEEEETTEEE-ECCCCSGGGTTSEEETTEEEEECSSTT---SSCSEEEEECTT-----------------
T ss_pred             CeEe-ECCCCCccCCCCccC-CCCcccCCCCCCCCCCCCEeecCCCCc---CCCCEECCCCCC-----------------
Confidence            3456 578888776   555 467898    78899999999876200   000145665554                 


Q ss_pred             CCCCcccCCCCCCCCCCcccCCCcCCCCCcc----CCC--CeeeCCCCCCCCCCccCCCCcccCCCCC-CCCCCcCCCC-
Q psy15473         86 QLTGYHHEPTSGGAFSRCVPCNCNGHADICD----AES--GRCICQDNTGGDNCERCARGYYGNALEG-AVTDCKQCPC-  157 (190)
Q Consensus        86 C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~----~~~--g~C~C~~g~~G~~C~~C~~G~~g~~c~~-~~~~C~~~~C-  157 (190)
                          |.|..+.. .++.|...+|..++ .|.    ...  ..|.|++||.|...       -+..|+. ++++|.. +| 
T Consensus        82 ----~~g~~~~C-~~d~C~~~~C~~~g-~C~~~~~~~~g~~~C~C~~Gy~g~~~-------~~~~C~~~~~~~C~~-~C~  147 (186)
T 1z1y_A           82 ----YTLXEDTC-VLDVCQYXNCGESG-ECIVEYLSEIQSAGCSCAIGXVPNPE-------DEXXCTXTGETACQL-XCN  147 (186)
T ss_dssp             ----EEEETTEE-EEGGGTTCCCCTTE-EEEEEEETTEEEEEEEECTEEEEETT-------TTTEEEEEECCCCCC-CCC
T ss_pred             ----CccCCCCC-CCCcCcCCCCCCCC-EEeeCCcCCCCCceEECCCCCcccCC-------CCCcceEcCCCcccc-ccc
Confidence                44443211 12456555566433 664    322  25666666555110       0023332 1356764 89 


Q ss_pred             CCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        158 PNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       158 ~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      .++++|++.. +.++| .|++||+|..+++
T Consensus       148 ~~~~~C~n~~-g~y~C-~C~~G~~g~~~~~  175 (186)
T 1z1y_A          148 TDNEVCXNVE-GVYXC-QCMEGFTFDXEXN  175 (186)
T ss_dssp             TTTEEEEEET-TEEEE-EECTTCEEETTTT
T ss_pred             ccCcceecCC-CCeee-ECCCCCccCcccc
Confidence            8889999876 67999 9999999998864

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=99.17  E-value=2.2e-11  Score=99.05  Aligned_cols=87  Identities=31%  Similarity=0.740  Sum_probs=69.2

Q ss_pred             ccCCCcCCCCCccCC------CCeeeCCCCCCCCCCccCCCCcccCCC----CCCCCCCcCCCCCCCCC-ceec------
Q psy15473        104 VPCNCNGHADICDAE------SGRCICQDNTGGDNCERCARGYYGNAL----EGAVTDCKQCPCPNQGP-CVQL------  166 (190)
Q Consensus       104 ~~c~C~~~~~~C~~~------~g~C~C~~g~~G~~C~~C~~G~~g~~c----~~~~~~C~~~~C~~~g~-C~~~------  166 (190)
                      .+|.|++|+..|+..      +++|.|+++++|..|++|++||+|.+-    ....+.|.+|+|+++++ |+..      
T Consensus       264 g~C~CnGHA~~C~~~~~~~~~~g~C~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~Cnghs~~C~~d~~~~~~  343 (403)
T 2y38_A          264 GRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRR  343 (403)
T ss_dssp             EECCCTTBCSCEEESCTTSTTCEEECCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCCTTSCSCEEECHHHHHT
T ss_pred             cccccCCCccccCCCCCCCccceEeECcCcCcCCCCCCCCccccCCcccccccCCCccccccccCCCCcccccCcccccc
Confidence            457899999889742      467999999999999999999999753    23456799999988775 7421      


Q ss_pred             ---------CCCCeeeCCCCCCCCCCCCCCCCC
Q psy15473        167 ---------DDDQVVCSECPRGYGGEKMSPGAQ  190 (190)
Q Consensus       167 ---------~~~~~~C~~C~~G~~G~~C~~c~~  190 (190)
                               ..+.++|..|+.++.|.+||+|++
T Consensus       344 ~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~  376 (403)
T 2y38_A          344 EASQNQDNVYQGGGVCLDCQHHTTGINCERCLP  376 (403)
T ss_dssp             TCCCCTTSCSCCCEEESSCCSSEESTTSCEECT
T ss_pred             cccccccccCCCCCCCCCCcCcCcCCCCCcCCC
Confidence                     124589944999999999999975

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.16  E-value=2.1e-11  Score=85.33  Aligned_cols=98  Identities=21%  Similarity=0.502  Sum_probs=61.6

Q ss_pred             CCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCccc
Q psy15473         13 GDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHH   92 (190)
Q Consensus        13 G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g   92 (190)
                      +..| .|++||+|..|+.++++|...||.++++|++..+.        +.|.                     |++||.|
T Consensus        27 ~~~C-~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~--------~~C~---------------------C~~G~~G   76 (135)
T 2vj3_A           27 SFEC-QCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGE--------FQCI---------------------CMPGYEG   76 (135)
T ss_dssp             SEEE-ECCTTEESTTSCEECCTTTTCCCCSSCEEEECSSC--------EEEE---------------------CCTTEES
T ss_pred             CEEE-ECCCCCcCCcccccCccCCCCCCCCCCEEeCCCCC--------ceee---------------------CCCCCcC
Confidence            3456 78999999999878889999999999999987653        3454                     4556666


Q ss_pred             CCCCCCCCCCcccCCCcCCCCCccCCCC--eeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcC
Q psy15473         93 EPTSGGAFSRCVPCNCNGHADICDAESG--RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ  154 (190)
Q Consensus        93 ~~~~~~~~~~C~~c~C~~~~~~C~~~~g--~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~  154 (190)
                      ..++. .++.|...+|..++ .|....+  .|.|++            ||.|..|+.++++|..
T Consensus        77 ~~C~~-~~~~C~~~~C~~~g-~C~~~~g~~~C~C~~------------G~~G~~C~~~i~~C~~  126 (135)
T 2vj3_A           77 VHCEV-NTDECASSPCLHNG-RCLDKINEFQCECPT------------GFTGHLCQVDLHHILD  126 (135)
T ss_dssp             SSSCE-ECCTTTTCCSTTTC-EEEECSSCEEEECCT------------TEESSSSCEECC----
T ss_pred             Cccee-cCCcccCCCcCCCC-EeECCCCCeEEECCC------------CCcCCccCccCccccC
Confidence            55542 23567666676443 6654332  555555            4555555545555653

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.15  E-value=2.5e-14  Score=110.13  Aligned_cols=163  Identities=13%  Similarity=0.037  Sum_probs=113.2

Q ss_pred             CCCCCCCCccCCCC---cccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCcccc-----
Q psy15473          9 DNTGGDNCERCARG---YYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALT-----   80 (190)
Q Consensus         9 ~g~~G~~C~~C~~g---~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~-----   80 (190)
                      ..|-|..+ .+.+|   +.|..++.++..+.. +|.++|+|++....        +.|.|+.+|.|.+|+.....     
T Consensus         8 n~~Gg~s~-~~~pgg~~~~g~~~~~n~~~~~~-~c~ngG~C~~g~~~--------y~C~Cp~Gf~G~~Ce~ni~ec~~~~   77 (267)
T 4fbr_A            8 NQWGGSQA-TWNPGGLWLIGARDKQNVVALDI-KSDDGGKTLKGTMT--------YNGEGPIGFRGTLSSANNYTVENQW   77 (267)
T ss_dssp             EECSSTTS-CCEEEEEEECCCCSSCCEEEEEE-ECSSTTSEEEEEEE--------ETTSCCEEEEEEECSTTEEEEEEES
T ss_pred             ecCCcccC-CcCCCCceeeccccccccccCCC-CcCCCCeecCCCCC--------eEEeCCCCccccccccccccccccc
Confidence            33455555 45566   566666666545444 89999999998765        68999999999988765443     


Q ss_pred             -CCCccCCCC---cccCCCCCCCCCCcccCCCcCCCCCccCC--CCeeeCCCCCCCCCCc---------------cCCCC
Q psy15473         81 -RQTHYQLTG---YHHEPTSGGAFSRCVPCNCNGHADICDAE--SGRCICQDNTGGDNCE---------------RCARG  139 (190)
Q Consensus        81 -~~~~~C~~G---~~g~~~~~~~~~~C~~c~C~~~~~~C~~~--~g~C~C~~g~~G~~C~---------------~C~~G  139 (190)
                       .....|.+|   |.|..++.  ..+|.+.+|.+.+ +|...  +.+|.|+++|+|.+|+               .|..+
T Consensus        78 ~c~s~pC~nggtc~~G~~c~~--~~eC~s~pC~ngG-~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ng  154 (267)
T 4fbr_A           78 GGTSAPWQPGGVWVLGARDKQ--NIVAVSIKSNDGG-KTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSG  154 (267)
T ss_dssp             SSTTSCEEEEEEEECCCCSSC--CEEEEEEECSSTT-SEEEEEEEETTSCCEEEEEEECCCCEEEEEEECSSTTSCCEEE
T ss_pred             CcCCCcccCCCeeeccCcccc--ccccCCCCCCCCC-EEecCCccEEeeCCCCccccCCCCCcccccccCCcCCccccCC
Confidence             222345554   45666654  3578888888555 77543  3588999999999887               13332


Q ss_pred             ---cccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        140 ---YYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       140 ---~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                         |.|..++..+ .|.+.+|.++|+|++.. .+|+| .|++||+|.+|+.
T Consensus       155 g~c~~G~~c~~~i-~c~~~~c~ngg~C~dg~-~~y~C-~Cp~Gf~G~~c~~  202 (267)
T 4fbr_A          155 GVWVLGTRGKQNV-INVDAKSNDGGKTLSGT-MTYNG-EGPIGFRGTLTSP  202 (267)
T ss_dssp             EEEECCSSTTSCE-EEEEEECSSTTSEEEEE-EEETT-SCCEEEEEEEEET
T ss_pred             cceeccccccccc-ccCCCCCCCCCEeeCCC-CCeEE-eCCCCcccccccc
Confidence               3466666543 25566899999999876 56999 9999999998863

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.13  E-value=4.2e-11  Score=95.61  Aligned_cols=116  Identities=26%  Similarity=0.600  Sum_probs=52.3

Q ss_pred             CCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCcccc-----------CCCccCCCCcccCCCCCCCCCC
Q psy15473         34 DCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALT-----------RQTHYQLTGYHHEPTSGGAFSR  102 (190)
Q Consensus        34 ~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~-----------~~~~~C~~G~~g~~~~~~~~~~  102 (190)
                      .| +.+|.++|+|...           ..|.|+++|.|..|+.....           .....|++||+|..|+.   ..
T Consensus       150 ~C-~~~C~~~G~C~~~-----------~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~~~~C~C~~G~~G~~C~~---~~  214 (324)
T 2ygq_A          150 EC-PGGCRNGGFCNER-----------RICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDK---AN  214 (324)
T ss_dssp             CC-SSCCCSSCEECTT-----------SCEECCTTEESSSSCEESSSSCCCTTCEECSSCCEECCTTCBTTTTCB---CC
T ss_pred             CC-CCCCCCCCEECCC-----------CeEECCCCCcCCCCCCCCCCCCCCCCCEEcCCCEEeCCCCccCCCccc---Cc
Confidence            45 3579999998641           46899999988776532111           11234888898888863   34


Q ss_pred             cccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473        103 CVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       103 C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G  182 (190)
                      |. .+|.+++ +|.. ++.|.|+++|+|..|+.              +.|. .+|.++|+|..    .++| .|++||.|
T Consensus       215 C~-~~C~~~G-~C~~-~~~C~C~~G~~G~~C~~--------------~~C~-~~C~~~g~C~~----~~~C-~C~~G~~G  271 (324)
T 2ygq_A          215 CS-TTCFNGG-TCFY-PGKCICPPGLEGEQCEI--------------SKCP-QPCRNGGKCIG----KSKC-KCSKGYQG  271 (324)
T ss_dssp             CS-SCCCSSC-CBSC-SSCBCCCTTCCTTTTC------------------------------------------------
T ss_pred             CC-CCCCCCC-eeCC-CCeeeCCCCccCCCCCc--------------CcCC-CcCCCCCEECC----CCEE-ECCCCCcC
Confidence            54 4566444 6754 45666666666665531              2343 47888999975    2799 99999999


Q ss_pred             CCCCC
Q psy15473        183 EKMSP  187 (190)
Q Consensus       183 ~~C~~  187 (190)
                      ..|+.
T Consensus       272 ~~C~~  276 (324)
T 2ygq_A          272 DLCSK  276 (324)
T ss_dssp             -----
T ss_pred             CCCcC
Confidence            99873

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.13  E-value=1.8e-11  Score=89.00  Aligned_cols=117  Identities=21%  Similarity=0.413  Sum_probs=78.4

Q ss_pred             CceeecCCCCCCCCCc---------------------cCCCCcccCCCCCCCCCCcCCCCC-CCCCceecCCcccccCCC
Q psy15473          2 FRRCICQDNTGGDNCE---------------------RCARGYYGNALEGAVTDCKQCPCP-NQGPCVQLDDDQVSNLGN   59 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~---------------------~C~~g~~g~~c~~~~~~C~~~~C~-~~g~C~~~~~~~~~~~~~   59 (190)
                      ..+|+|.+||.|..|+                     .|++||+|..|+..  .|.. .|. .+++|++           
T Consensus        16 ~~~c~C~~g~~G~~C~~~C~~~~~c~~~g~C~~~g~C~C~~G~~G~~C~~~--~C~~-~C~~~~g~C~~-----------   81 (169)
T 2vj2_A           16 RSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRA--ICRQ-GCSPKHGSCKL-----------   81 (169)
T ss_dssp             -----CCTTEETTTTCEECCCEEETTEEEEECSSCCEEECTTEESTTSCEE--CCCT-TCCTTTEECSS-----------
T ss_pred             CeeeeCCCcCcCCCcccccCCCCCcCCCCEeCCCCeeECCCCCcCCCCCCC--CCCC-CCCCCCcccCC-----------
Confidence            4579999999999986                     48999999988753  3553 454 4566654           


Q ss_pred             ceeEeecCCCCCCCCCCccc----------cCCCccCCCCcccCCCCCCCCCCccc-CCCcCCCCCccCC---CCeeeCC
Q psy15473         60 RTRIRIKSALGGNRTRGLAL----------TRQTHYQLTGYHHEPTSGGAFSRCVP-CNCNGHADICDAE---SGRCICQ  125 (190)
Q Consensus        60 ~~~c~c~~~~~g~~c~~~~~----------~~~~~~C~~G~~g~~~~~~~~~~C~~-c~C~~~~~~C~~~---~g~C~C~  125 (190)
                      .+.|.|+++|.|..|+.-..          ......|++||+|..|+. .++.|.. .+|.+++ +|...   .++|.|+
T Consensus        82 ~~~C~C~~G~~G~~C~~C~~~~~C~~g~C~~~~~C~C~~G~~G~~C~~-~~~~C~~~~~C~~~g-~C~~~~~~~~~C~C~  159 (169)
T 2vj2_A           82 PGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDK-DLNYCGTHQPCLNGG-TCSNTGPDKYQCSCP  159 (169)
T ss_dssp             TTCCEECTTEESSSSCEECCCTTCSSEECSSTTCCEECTTEETTTTCE-ESCHHHHTCCCCTTC-EEEECSTTCEEEECC
T ss_pred             CCeeECCCCCCCCCcccCCCCCCCCCCCcCCCCEEeCCCCCCCCcccC-CCCCCCCCCCCCCCC-EEcCCCCCCcEeECC
Confidence            15789999999977653111          112235899999998863 2466764 6787555 78652   3689999


Q ss_pred             CCCCCCCCc
Q psy15473        126 DNTGGDNCE  134 (190)
Q Consensus       126 ~g~~G~~C~  134 (190)
                      ++|+|.+|+
T Consensus       160 ~G~~G~~Ce  168 (169)
T 2vj2_A          160 EGYSGPNCE  168 (169)
T ss_dssp             TTCCSTTSC
T ss_pred             CCCcCcCcC
Confidence            999888875

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.11  E-value=2.2e-10  Score=80.74  Aligned_cols=108  Identities=19%  Similarity=0.377  Sum_probs=61.9

Q ss_pred             ceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCC
Q psy15473          3 RRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQ   82 (190)
Q Consensus         3 ~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~   82 (190)
                      .+|.|++||+|..|+.-..--.+..-...+++|.+.||.++++|+....... .....+.|.                  
T Consensus        23 ~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~-~~~~~~~C~------------------   83 (143)
T 4d90_A           23 FSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRG-DTFIGYVCK------------------   83 (143)
T ss_dssp             CEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEET-TEECCEEEE------------------
T ss_pred             EEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCcccc-CCCCCeEeE------------------
Confidence            3577777777777654221111111112457899999999999985432000 000113444                  


Q ss_pred             CccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCC--eeeCCCCCCCCCCc
Q psy15473         83 THYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESG--RCICQDNTGGDNCE  134 (190)
Q Consensus        83 ~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g--~C~C~~g~~G~~C~  134 (190)
                         |++||.|..|+. .++.|...+|..++ .|....+  .|.|+++|+|.+|+
T Consensus        84 ---C~~G~~G~~C~~-~i~~C~~~~C~~~~-~C~~~~g~~~C~C~~G~~G~~c~  132 (143)
T 4d90_A           84 ---CPRGFNGIHCQH-NINECEVEPCKNGG-ICTDLVANYSCECPGEFMGRNCQ  132 (143)
T ss_dssp             ---CCTTEESTTSCE-ECCTTTTCCSCTTC-EEEEETTEEEEECCTTCBSTTSC
T ss_pred             ---CcCCCcCCCccc-CCCcCCCCCCCCCC-EeECCCCCeEeECCCCCccCCce
Confidence               566666666652 24678777787544 7765443  67887777777764

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.10  E-value=6.6e-11  Score=102.41  Aligned_cols=81  Identities=26%  Similarity=0.596  Sum_probs=52.8

Q ss_pred             CCcccCCCCCCCCCCccc---CCCcC--CCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCC---CCCC
Q psy15473         88 TGYHHEPTSGGAFSRCVP---CNCNG--HADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQC---PCPN  159 (190)
Q Consensus        88 ~G~~g~~~~~~~~~~C~~---c~C~~--~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~---~C~~  159 (190)
                      +||+|..|+. ....|..   ..|.+  ++ .|.  .++|.|++||+|..|+ |..         ....|...   +|.+
T Consensus       505 ~G~~G~~Ce~-~~~~C~~~~~~~C~~~~~G-~C~--~g~C~C~~G~~G~~Ce-c~~---------~~~~C~~~~g~~Cs~  570 (687)
T 3k6s_B          505 KLIYGQYCEC-DTINCERYNGQVCGGPGRG-LCF--CGKCRCHPGFEGSACQ-CER---------TTEGCLNPRRVECSG  570 (687)
T ss_dssp             CCEESTTSCE-ESSCSCEETTEETSHHHHE-EEE--TTEEEECTTCCSTTSC-SCC---------SSCTTBCTTCSBTSS
T ss_pred             CCcccccccc-ccccccCCCCcCcCCCCCC-eEE--CCEEEcCCCCcCCCCc-cCC---------CCCCCCCCCCCCCCC
Confidence            7788877753 1244542   13543  33 554  3577777777777774 332         22346543   7989


Q ss_pred             CCCceecCCCCeeeCCCCCCCCCCCCCCC
Q psy15473        160 QGPCVQLDDDQVVCSECPRGYGGEKMSPG  188 (190)
Q Consensus       160 ~g~C~~~~~~~~~C~~C~~G~~G~~C~~c  188 (190)
                      +|+|..     ++| .|++||.|.+|+.|
T Consensus       571 ~G~C~~-----g~C-~C~~Gy~G~~Ce~c  593 (687)
T 3k6s_B          571 RGRCRC-----NVC-ECHSGYQLPLCQEC  593 (687)
T ss_dssp             SCCBCS-----SCB-CCSTTCCTTTTCCC
T ss_pred             CCcCCC-----CEE-ECCCCCcCCCCCCC
Confidence            999975     589 99999999999975

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.07  E-value=5.1e-11  Score=97.35  Aligned_cols=98  Identities=28%  Similarity=0.696  Sum_probs=29.1

Q ss_pred             ceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCC
Q psy15473          3 RRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQ   82 (190)
Q Consensus         3 ~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~   82 (190)
                      ++|.|++||+|++||+|.+||++..+...             ++.....                               
T Consensus       313 ~~C~C~~~ttG~~CE~C~pgy~~~P~~~g-------------t~~p~~~-------------------------------  348 (426)
T 3zyj_B          313 LTCECEHNTTGPDCGKCKKNYQGRPWSPG-------------SYLPIPK-------------------------------  348 (426)
T ss_dssp             EEECCCTTEESSSSCEECTTCCSSCCCCC-------------BCCSSSS-------------------------------
T ss_pred             ceeeCCCCCcCCCccccccccccCcccCC-------------cccccCC-------------------------------
Confidence            47999999999999999999988766421             1100000                               


Q ss_pred             CccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeee----CCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCC
Q psy15473         83 THYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCI----CQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCP  158 (190)
Q Consensus        83 ~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~----C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~  158 (190)
                                     +....|++|+|..++..|+..++.|.    |+.+.   +| +|++||+|..       |+.++|.
T Consensus       349 ---------------g~~~~C~pC~Cn~~g~~CD~~t~~C~ngg~C~~~~---~C-~C~~G~~G~~-------Ce~c~C~  402 (426)
T 3zyj_B          349 ---------------GAANACIPSISSIGTNVCDNELLHCQNGGTCHNNV---RC-LCPAAYTGIL-------CEKLRCE  402 (426)
T ss_dssp             ---------------CBCCCCCCCCC------------------------------------------------------
T ss_pred             ---------------CCCCcccCCCCCCCcCccccCcccCCCCCCcCCCC---CC-cCCCCCcCCC-------CcCCCCC
Confidence                           01134566666655556666556664    66555   78 7889999876       4567899


Q ss_pred             CCCCceecCCCCeee
Q psy15473        159 NQGPCVQLDDDQVVC  173 (190)
Q Consensus       159 ~~g~C~~~~~~~~~C  173 (190)
                      ++|+|++..   +.|
T Consensus       403 ~~g~C~~~~---Gqc  414 (426)
T 3zyj_B          403 EAGSCGSDS---GQG  414 (426)
T ss_dssp             ---------------
T ss_pred             CCCcccCCC---Ccc
Confidence            999998754   566

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=99.02  E-value=3.2e-10  Score=91.75  Aligned_cols=102  Identities=25%  Similarity=0.622  Sum_probs=75.3

Q ss_pred             CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCC---CCCCcccCCCcCCCC
Q psy15473         37 QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGG---AFSRCVPCNCNGHAD  113 (190)
Q Consensus        37 ~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~---~~~~C~~c~C~~~~~  113 (190)
                      .|.|+.|+++......      ....|.|++++.|..|         +.|.+||++.++..+   ....|.+|.|+.++.
T Consensus       254 ~C~Cngh~s~c~~~~~------~~~~C~C~~nt~G~~C---------e~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~  318 (375)
T 4aqt_A          254 RCKCNGHASECVKNEF------DKLMCNCKHNTYGVDC---------EKCLPFFNDRPWRRATAESASECLPCDCNGRSQ  318 (375)
T ss_dssp             EECCTTSCSCEEECTT------SCEEECCCTTEESTTS---------CEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCS
T ss_pred             eecCCCCCcccCCCCC------CCeeeeCcCCCcCCCc---------ccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCC
Confidence            4778888875433321      1257899999998776         679999999876422   235799999998876


Q ss_pred             Cc---------cCCCCee-eCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCC
Q psy15473        114 IC---------DAESGRC-ICQDNTGGDNCERCARGYYGNALEGAVTDCKQCP  156 (190)
Q Consensus       114 ~C---------~~~~g~C-~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~  156 (190)
                      .|         +..+|+| .|++||+|.+|++|++||||....   ..|++|.
T Consensus       319 ~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce~C~~Gyyg~~~~---~~C~pCa  368 (375)
T 4aqt_A          319 ECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNT---EACSPAA  368 (375)
T ss_dssp             CEEECHHHHHHSSCCEEECSCTTTEESTTSCEECSSEECCTTC---SSCEEC-
T ss_pred             CcccccccCccCCCCCCCCCCCCCCcCCCCCCCCcCcccCcCC---CCCcCCc
Confidence            54         4557899 599999999999999999997643   4476554

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.01  E-value=7.4e-10  Score=96.10  Aligned_cols=109  Identities=27%  Similarity=0.572  Sum_probs=70.4

Q ss_pred             cCC----CCcccCCCCCCCCCCcC---CCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCc
Q psy15473         18 RCA----RGYYGNALEGAVTDCKQ---CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGY   90 (190)
Q Consensus        18 ~C~----~g~~g~~c~~~~~~C~~---~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~   90 (190)
                      .|+    +||+|..|+.+.+.|..   .+|.++|+|..            +.|.|+++|.|..|+          |+   
T Consensus       507 ~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~------------g~C~C~~Gy~G~~Ce----------C~---  561 (690)
T 3fcs_B          507 VCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC------------GDCLCDSDWTGYYCN----------CT---  561 (690)
T ss_dssp             EECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET------------TEEEECTTEESSSSC----------EE---
T ss_pred             EeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC------------CeeECcCCCcCCCCc----------cC---
Confidence            466    77888888766667875   47888888864            246665555554442          00   


Q ss_pred             ccCCCCCCCCCCccc---CCCcCCCCCccCCCCeeeC-CCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceec
Q psy15473         91 HHEPTSGGAFSRCVP---CNCNGHADICDAESGRCIC-QDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQL  166 (190)
Q Consensus        91 ~g~~~~~~~~~~C~~---c~C~~~~~~C~~~~g~C~C-~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~  166 (190)
                            . ..+.|..   ..|.+++ .|.  .+.|.| .+||.|..|+.|..             | +.+|.++|+|+  
T Consensus       562 ------~-~~~~C~~~~g~~C~~~G-~C~--~g~C~C~~~Gy~G~~Ce~C~~-------------C-~~~C~~~g~Cv--  615 (690)
T 3fcs_B          562 ------T-RTDTCMSSNGLLCSGRG-KCE--CGSCVCIQPGSYGDTCEKCPT-------------C-PDACTFKKECV--  615 (690)
T ss_dssp             ------C-CCTTTBCTTSSBTSSSC-EEE--TTEEECCSTTCBSTTSCBCTT-------------S-CCTTTSCCGGG--
T ss_pred             ------C-CCCcccCCCCCCCCCCC-EEe--CCEEECCCCCccCCCcCcCCC-------------C-CCCCCCCCCcc--
Confidence                  1 1245553   4577555 774  368888 88888888876521             3 34677777774  


Q ss_pred             CCCCeeeCCCCCCCCCCCC
Q psy15473        167 DDDQVVCSECPRGYGGEKM  185 (190)
Q Consensus       167 ~~~~~~C~~C~~G~~G~~C  185 (190)
                              .|+.+|+|..|
T Consensus       616 --------~C~~g~tG~~C  626 (690)
T 3fcs_B          616 --------ECKKFDRGALH  626 (690)
T ss_dssp             --------TTTTTCCSSSS
T ss_pred             --------cCCCCCccCCC
Confidence                    47889999865

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.96  E-value=4.5e-10  Score=73.21  Aligned_cols=81  Identities=20%  Similarity=0.364  Sum_probs=58.0

Q ss_pred             ccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCC-CCCCCCcCCCCCCCCC
Q psy15473         84 HYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE-GAVTDCKQCPCPNQGP  162 (190)
Q Consensus        84 ~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~-~~~~~C~~~~C~~~g~  162 (190)
                      ..|++||.|..++   ++.|...+|.+.     .....|.|+++|+  .|            + .++++|.+.||.++|+
T Consensus         4 C~C~~g~~g~~c~---~~~c~~~pC~n~-----~~~y~C~C~~G~~--~C------------~~~~~~~C~~~pC~ngg~   61 (91)
T 1tpg_A            4 VICRDEKTQMIYQ---QHQSWLRPVLRS-----NRVEYCWCNSGRA--QC------------HSVPVKSCSEPRCFNGGT   61 (91)
T ss_dssp             CCCBCSSSCCBCC---SSCEEEEECSSS-----SCEEEEECSSSCC--BC------------CEECEEECSSCCSCTTCE
T ss_pred             eECCCCCcCCeEC---CCcccCCccccC-----CCCcEeECCCCCc--cc------------ccCcCCcccCCCCCCCCE
Confidence            4589999998774   366765555532     1234677777765  33            3 2456788889999999


Q ss_pred             ceecC-CCCeeeCCCCCCCCCCCCCC
Q psy15473        163 CVQLD-DDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       163 C~~~~-~~~~~C~~C~~G~~G~~C~~  187 (190)
                      |+... .+.++| .|++||+|.+|+.
T Consensus        62 C~~~~~~~~~~C-~C~~G~~G~~Ce~   86 (91)
T 1tpg_A           62 CQQALYFSDFVC-QCPEGFAGKSCEI   86 (91)
T ss_dssp             EEEESSSSCEEE-ECCTTCBSSSCCB
T ss_pred             eecCCCCCCeEe-ECCCCCcCCcCCc
Confidence            99763 245999 9999999999984

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.92  E-value=6.2e-10  Score=95.46  Aligned_cols=124  Identities=19%  Similarity=0.419  Sum_probs=73.1

Q ss_pred             CCCCCcCCCCCCCCCceecCCcccccCCCceeE-eecCCCCCCCCCCccccCCCccCCCCccc--CCCCCCCCCCcccCC
Q psy15473         31 AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRI-RIKSALGGNRTRGLALTRQTHYQLTGYHH--EPTSGGAFSRCVPCN  107 (190)
Q Consensus        31 ~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c-~c~~~~~g~~c~~~~~~~~~~~C~~G~~g--~~~~~~~~~~C~~c~  107 (190)
                      ++++|.+.||+++++|++.....       +.| .|                     ++||+|  ..|+  .+++|...+
T Consensus         2 DIDeC~~nPC~~gg~C~n~~~Gs-------y~C~~C---------------------~~GytGdg~~Ce--DiDEC~~~p   51 (634)
T 1yo8_A            2 DPDGCLSNPCFPGAQCSSFPDGS-------WSCGFC---------------------PVGFLGNGTHCE--DLDECALVP   51 (634)
T ss_dssp             --CGGGGCCSCTTCCEEECTTSC-------EEECCC---------------------CTTBCSCSSSCC--BCCTTTTSC
T ss_pred             cccccCCCCCCCCCEEecCCCCC-------eECCcC---------------------CCccCCCCCCcc--ccccccCCC
Confidence            46789999999999999876431       355 44                     455554  3443  346676544


Q ss_pred             --CcCCCC--CccCCC--Ceee-CCCCCCCCCCccCC---CCcccCCCCCCCCCCcC--CCCCCCCCceecC---CCCee
Q psy15473        108 --CNGHAD--ICDAES--GRCI-CQDNTGGDNCERCA---RGYYGNALEGAVTDCKQ--CPCPNQGPCVQLD---DDQVV  172 (190)
Q Consensus       108 --C~~~~~--~C~~~~--g~C~-C~~g~~G~~C~~C~---~G~~g~~c~~~~~~C~~--~~C~~~g~C~~~~---~~~~~  172 (190)
                        |...+.  +|....  .+|. |+++|+|..|+.=.   ...-+..| ..+++|..  .+|.++++|+...   .+.++
T Consensus        52 ~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C-~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~  130 (634)
T 1yo8_A           52 DICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVC-EPENPCKDKTHNCHKHAECIYLGHFSDPMYK  130 (634)
T ss_dssp             CCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCE-EECCTTTTTCCCCCTTEEEEECCTTCSSSEE
T ss_pred             CcccCCccccceeeccCceecccCCCCcccCccccccccccccCCCcc-cccccccCCCcccccCcccccccccccccee
Confidence              663321  454322  2554 55555554442000   00011122 24677874  5899999998864   25699


Q ss_pred             eCCCCCCCCC--CCCC
Q psy15473        173 CSECPRGYGG--EKMS  186 (190)
Q Consensus       173 C~~C~~G~~G--~~C~  186 (190)
                      | .|++||.|  .+|+
T Consensus       131 C-~C~~Gy~GdG~~Ce  145 (634)
T 1yo8_A          131 C-ECQTGYAGDGLICG  145 (634)
T ss_dssp             E-EECTTEEESSSSEE
T ss_pred             e-eccCCccccCcccc
Confidence            9 99999998  6775

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.91  E-value=2.6e-10  Score=93.22  Aligned_cols=84  Identities=32%  Similarity=0.701  Sum_probs=45.1

Q ss_pred             CCcccCCCcCCCCCccCCCC--eeeCCCCCCCCCCccCCCCcccCCCC---------CCCCCCcCCCC------------
Q psy15473        101 SRCVPCNCNGHADICDAESG--RCICQDNTGGDNCERCARGYYGNALE---------GAVTDCKQCPC------------  157 (190)
Q Consensus       101 ~~C~~c~C~~~~~~C~~~~g--~C~C~~g~~G~~C~~C~~G~~g~~c~---------~~~~~C~~~~C------------  157 (190)
                      ....+|.|++|+..|+...+  .|.|+++|+|..|++|.+||++.+..         ....+|.+++|            
T Consensus       292 ~v~g~C~CnGHas~C~~~~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~t~  371 (426)
T 3zyj_B          292 KVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELL  371 (426)
T ss_dssp             ECEEEECCSSSCSCEEEETTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC------------
T ss_pred             cccccCcCCCchhhcCCCCCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccCcc
Confidence            45677899999989987554  89999999999999999999976553         23456776655            


Q ss_pred             --CCCCCceecCCCCeeeCCCCCCCCCCCCCCCC
Q psy15473        158 --PNQGPCVQLDDDQVVCSECPRGYGGEKMSPGA  189 (190)
Q Consensus       158 --~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~c~  189 (190)
                        .++|+|.+.    .+| .|++||.|..|++|.
T Consensus       372 ~C~ngg~C~~~----~~C-~C~~G~~G~~Ce~c~  400 (426)
T 3zyj_B          372 HCQNGGTCHNN----VRC-LCPAAYTGILCEKLR  400 (426)
T ss_dssp             ----------------------------------
T ss_pred             cCCCCCCcCCC----CCC-cCCCCCcCCCCcCCC
Confidence              445556553    289 899999999998763

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.91  E-value=4.1e-10  Score=79.45  Aligned_cols=120  Identities=18%  Similarity=0.370  Sum_probs=71.9

Q ss_pred             CCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccC---CCcCCCCC
Q psy15473         38 CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPC---NCNGHADI  114 (190)
Q Consensus        38 ~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c---~C~~~~~~  114 (190)
                      .+|+++++|++.           +.|.|+++|.|..- ..           ...+..|+  .+++|...   +|..++ .
T Consensus         7 ~~C~~~~~C~~~-----------~~C~C~~G~~g~~~-~~-----------~~~~~~C~--dideC~~~~~~~C~~~~-~   60 (143)
T 2bou_A            7 RWCPQDSSCVNA-----------TACRCNPGFSSFSE-II-----------TTPMETCD--DINECATLSKVSCGKFS-D   60 (143)
T ss_dssp             TTCCTTEEESSS-----------SCEEECTTEECSSS-SB-----------CSTTCCCE--ECCGGGC----CCCTTE-E
T ss_pred             CcCCCCCEEcCC-----------CEEeCCCCCcCccc-cc-----------cCCCCcCC--ccccccCCCCCCCCCCC-E
Confidence            578899988753           35776666655210 00           00012232  23566543   565333 6


Q ss_pred             ccCCC--CeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCc--CCCCCCCCCceecCCCCeeeCCCCCCCCCCCCC
Q psy15473        115 CDAES--GRCICQDNTGGDNCERCARGYYGNALEGAVTDCK--QCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMS  186 (190)
Q Consensus       115 C~~~~--g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~--~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~  186 (190)
                      |....  ..|.|+++|+|..++.=.....+..|+ ++++|.  +.+|.++++|++.. +.|+| .|++||+|....
T Consensus        61 C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~-dideC~~~~~~C~~~~~C~n~~-g~y~C-~C~~Gy~g~~~~  133 (143)
T 2bou_A           61 CWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTV-GSYSC-RCRPGWKPRHGI  133 (143)
T ss_dssp             EEECSSCEEEEECTTEEETTCCSCBSSGGGCCEE-ECCHHHHTCCCCCTTSEEEECS-SCEEE-ECCSSSCBCTTC
T ss_pred             EEcCCCCeEeECCCCcccCcCccccccCCCCCcC-CccCccCcCCCCCCCCEEECCC-CCEEe-eCCCCcccCCCC
Confidence            65433  377787777776553211112233443 567787  37899999999875 67999 999999998864

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=98.90  E-value=7.1e-10  Score=89.77  Aligned_cols=92  Identities=17%  Similarity=0.437  Sum_probs=63.7

Q ss_pred             ceeecCCCCCCCCCccCCCCcccCCCCC----CCCCCcCCCCCCCCCceecCCcccccCCCceeE-eecCCCCCCCCCCc
Q psy15473          3 RRCICQDNTGGDNCERCARGYYGNALEG----AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRI-RIKSALGGNRTRGL   77 (190)
Q Consensus         3 ~~C~C~~g~~G~~C~~C~~g~~g~~c~~----~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c-~c~~~~~g~~c~~~   77 (190)
                      +.|.|++||+|.+|++|.+||+|..|..    +.+.|.+|.|+.+++-............+...| .|++++.|.+|   
T Consensus       272 ~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~C---  348 (375)
T 4aqt_A          272 LMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKC---  348 (375)
T ss_dssp             EEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHHSSCCEEECSCTTTEESTTS---
T ss_pred             eeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCccCCCCCCCCCCCCCCcCCCC---
Confidence            4689999999999999999999998763    456899999998876222111100001122567 48888888666   


Q ss_pred             cccCCCccCCCCcccCCCCCCCCCCcccCC
Q psy15473         78 ALTRQTHYQLTGYHHEPTSGGAFSRCVPCN  107 (190)
Q Consensus        78 ~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~  107 (190)
                            +.|++||||....    ..|++|.
T Consensus       349 ------e~C~~Gyyg~~~~----~~C~pCa  368 (375)
T 4aqt_A          349 ------ERCRENFFRLGNT----EACSPAA  368 (375)
T ss_dssp             ------CEECSSEECCTTC----SSCEEC-
T ss_pred             ------CCCCcCcccCcCC----CCCcCCc
Confidence                  6799999997532    4576543

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.89  E-value=3.4e-11  Score=85.46  Aligned_cols=134  Identities=19%  Similarity=0.421  Sum_probs=78.5

Q ss_pred             CCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccC-CC
Q psy15473         30 GAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPC-NC  108 (190)
Q Consensus        30 ~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c-~C  108 (190)
                      .++|+|++.||.+ ++|++..++        +.|.|+++|.+..+...........|..+|.+..|+.. ++.|... .|
T Consensus         2 ~dideC~~~pC~n-g~C~n~~g~--------y~C~C~~G~~g~~~~~~C~~~~~~~C~~~~~g~~C~~~-~~~c~~~~~C   71 (147)
T 2w86_A            2 ADIDECESSPCIN-GVCKNSPGS--------FICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEIN-INGATLKSQC   71 (147)
T ss_dssp             CCCCGGGGCCSBT-SEEEEETTE--------EEEECCTTEEECTTSSBEEECCCEEEEEEEETTEEEEE-EEEEECHHHH
T ss_pred             CcCccCcCCCCCC-CEeECCCCC--------EEeECCCCcccCCCCCeecCCCCCcccCCCCCCccccC-CCccccCCcc
Confidence            4678999999986 699988764        68999988887655433332222345555555444310 1112100 00


Q ss_pred             cCCCCCccCCCCee-eCCCCCCCCCCccCCCCcc---cCCCCCCCCCCcC--CCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473        109 NGHADICDAESGRC-ICQDNTGGDNCERCARGYY---GNALEGAVTDCKQ--CPCPNQGPCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       109 ~~~~~~C~~~~g~C-~C~~g~~G~~C~~C~~G~~---g~~c~~~~~~C~~--~~C~~~g~C~~~~~~~~~C~~C~~G~~G  182 (190)
                      .......  ..+.| .|     ...| .|++||.   |..|+ ++++|..  .+|.+ ++|++.. ++|+| .|++||+|
T Consensus        72 ~~~~g~~--~g~~C~~c-----~~~C-~C~~Gy~~~~g~~C~-dideC~~~~~~C~~-g~C~n~~-g~y~C-~C~~Gy~g  139 (147)
T 2w86_A           72 CSSLGAA--WGSPCTLC-----QVDP-ICGKGYSRIKGTQCE-DIDECEVFPGVCKN-GLCVNTR-GSFKC-QCPSGMTL  139 (147)
T ss_dssp             HTTTCSE--ETTTTEEC-----CCCT-TTCTTEEEEETTEEE-ECCHHHHSTTCSSS-SEEEEET-TEEEE-ECCTTCCB
T ss_pred             ccCcCcc--cCCCcccC-----CCcc-cCCCccccCCCCccC-ccccccCCCCCCCC-CEEECCC-CCEEe-eCCCCCcc
Confidence            0000000  00011 01     1234 6788884   77775 6788974  45985 6999876 67999 99999998


Q ss_pred             CCC
Q psy15473        183 EKM  185 (190)
Q Consensus       183 ~~C  185 (190)
                      ..-
T Consensus       140 ~~~  142 (147)
T 2w86_A          140 DAT  142 (147)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            653

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.83  E-value=3.5e-09  Score=68.95  Aligned_cols=64  Identities=22%  Similarity=0.359  Sum_probs=50.8

Q ss_pred             CceeecCCCCCCCCCc------------------cCCCCcccCCCC-CCCCCCcCCCCCCCCCceecC--CcccccCCCc
Q psy15473          2 FRRCICQDNTGGDNCE------------------RCARGYYGNALE-GAVTDCKQCPCPNQGPCVQLD--DDQVSNLGNR   60 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~------------------~C~~g~~g~~c~-~~~~~C~~~~C~~~g~C~~~~--~~~~~~~~~~   60 (190)
                      +.+|+|.++|+|..|+                  .|++||.  .|+ .++++|.+.||+|+|+|++..  ..        
T Consensus         1 sy~C~C~~g~~g~~c~~~~c~~~pC~n~~~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~--------   70 (91)
T 1tpg_A            1 SYQVICRDEKTQMIYQQHQSWLRPVLRSNRVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSD--------   70 (91)
T ss_dssp             CCCCCCBCSSSCCBCCSSCEEEEECSSSSCEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSC--------
T ss_pred             CeeeECCCCCcCCeECCCcccCCccccCCCCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCC--------
Confidence            3579999999999998                  5999997  787 567899999999999999875  32        


Q ss_pred             eeEeecCCCCCCCCC
Q psy15473         61 TRIRIKSALGGNRTR   75 (190)
Q Consensus        61 ~~c~c~~~~~g~~c~   75 (190)
                      +.|.|+++|.|.+|+
T Consensus        71 ~~C~C~~G~~G~~Ce   85 (91)
T 1tpg_A           71 FVCQCPEGFAGKSCE   85 (91)
T ss_dssp             EEEECCTTCBSSSCC
T ss_pred             eEeECCCCCcCCcCC
Confidence            567776666665553

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.78  E-value=5.6e-10  Score=80.39  Aligned_cols=122  Identities=21%  Similarity=0.497  Sum_probs=75.0

Q ss_pred             CCCCCc-CCCCCCCCCceecCCcccccCCCceeEeecCCCC----CCCCCCccccCCCccCCCCcccCCCCCCCCCCccc
Q psy15473         31 AVTDCK-QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG----GNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVP  105 (190)
Q Consensus        31 ~~~~C~-~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~----g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~  105 (190)
                      ++|+|+ +.||. +++|++..++        +.|.|+++|.    |..|+...                     ...|..
T Consensus         2 dideC~~~~~C~-~~~C~n~~gs--------y~C~C~~Gy~~~~~g~~C~d~~---------------------~~~C~~   51 (162)
T 1uzk_A            2 DVNECLDPTTCI-SGNCVNTPGS--------YICDCPPDFELNPTRVGCVDTR---------------------SGNCYL   51 (162)
T ss_dssp             CCCGGGSTTSSB-TSEEEEETTE--------EEEECCTTCEECTTSSBEECCC---------------------CEEEEE
T ss_pred             ccccCCCCCCCC-CCEeECCCCC--------EEEeCCCCCeECCCCCcccCCC---------------------CCcccC
Confidence            568898 48997 6899998765        5787777775    33332110                     011321


Q ss_pred             C--CCc-CCCCCccCC------CCeeeCCCCCC-CCCCcc------------CCC--CcccCC---CCCCCCCCcC--CC
Q psy15473        106 C--NCN-GHADICDAE------SGRCICQDNTG-GDNCER------------CAR--GYYGNA---LEGAVTDCKQ--CP  156 (190)
Q Consensus       106 c--~C~-~~~~~C~~~------~g~C~C~~g~~-G~~C~~------------C~~--G~~g~~---c~~~~~~C~~--~~  156 (190)
                      .  +|. .....|...      ...|.|+++|. |..|+.            |++  ||.+..   +..++++|+.  .+
T Consensus        52 ~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~~~~~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~  131 (162)
T 1uzk_A           52 DIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGL  131 (162)
T ss_dssp             EC----------CEEEEEEEECHHHHHTTTCCEETTTTEECCCTTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGG
T ss_pred             CCcccCCCCCCcccCCcCCcccCceeeCCCCCCcCCCcccCCCCCCCCceeECCCCCCcccCCCCCccCccccccCCCCC
Confidence            1  111 012245432      24688888886 666654            444  888863   2246788874  45


Q ss_pred             CCCCCCceecCCCCeeeCCCCCCCCCCCC
Q psy15473        157 CPNQGPCVQLDDDQVVCSECPRGYGGEKM  185 (190)
Q Consensus       157 C~~~g~C~~~~~~~~~C~~C~~G~~G~~C  185 (190)
                      |.+ ++|++.. ++|+| .|++||+|..-
T Consensus       132 C~~-g~C~n~~-gsy~C-~C~~Gy~g~~d  157 (162)
T 1uzk_A          132 CQG-GKCINTF-GSFQC-RCPTGYYLNED  157 (162)
T ss_dssp             GBT-SEEEECS-SCEEE-ECCTTCCBCTT
T ss_pred             cCC-CEeEcCC-CCEEe-eCCCCccCCCC
Confidence            875 7999876 67999 99999998753

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.73  E-value=2.7e-09  Score=62.57  Aligned_cols=45  Identities=20%  Similarity=0.590  Sum_probs=35.3

Q ss_pred             cCCCCCCCCCCcCCCCCCCCCceec----CCCCeeeCCCCCCCCCCCCCC
Q psy15473        142 GNALEGAVTDCKQCPCPNQGPCVQL----DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       142 g~~c~~~~~~C~~~~C~~~g~C~~~----~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      |..|+.++++|.+.||+|+|+|+..    ..+.|+| .|++||+|.+||.
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C-~C~~g~~G~~CE~   49 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLC-KCPNEFTGDRCQN   49 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEE-EECTTEESTTSCE
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeE-eCCCCCcCCCcCc
Confidence            3456667899999999999999532    1245999 9999999999985

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.65  E-value=4.4e-10  Score=82.76  Aligned_cols=105  Identities=16%  Similarity=0.325  Sum_probs=61.8

Q ss_pred             CcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcc----cCCCcC
Q psy15473         35 CKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCV----PCNCNG  110 (190)
Q Consensus        35 C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~----~c~C~~  110 (190)
                      ..+.||.++ +|++..+.        +.|.|+++|.|..                  +..|+  .++.|.    +.+|..
T Consensus         8 ~~~~pC~ng-~C~~~~g~--------~~C~C~~G~~g~~------------------~~~C~--~id~C~~~~~~~~C~~   58 (186)
T 1z1y_A            8 TVDTICXNG-QLVQMSNH--------FXCMCNEGLVHLS------------------ENTCE--EXNECXXETLGXACGE   58 (186)
T ss_dssp             CTTCCCBTE-EEEECSSC--------EEEEECTTEEEEE------------------TTEEE--ECCCCSGGGTTSEEET
T ss_pred             CCCCCCCCC-EeECCCCC--------eEeECCCCCccCC------------------CCccC--CCCcccCCCCCCCCCC
Confidence            346789865 89887654        4666655554420                  00232  235565    344553


Q ss_pred             CCCCccCCC-------CeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCcee---cCCCCeeeCCCCCCC
Q psy15473        111 HADICDAES-------GRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQ---LDDDQVVCSECPRGY  180 (190)
Q Consensus       111 ~~~~C~~~~-------g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~---~~~~~~~C~~C~~G~  180 (190)
                      ++ .|....       ..|.|++||+|            ..+.-.+++|...+|.++++|+.   ...+.++| .|++||
T Consensus        59 ~~-~C~~~~~~~~~g~y~C~C~~G~~g------------~~~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C-~C~~Gy  124 (186)
T 1z1y_A           59 FG-QCIENPDPAQVNMYXCGCIEGYTL------------XEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGC-SCAIGX  124 (186)
T ss_dssp             TE-EEEECSSTTSSCSEEEEECTTEEE------------ETTEEEEGGGTTCCCCTTEEEEEEEETTEEEEEE-EECTEE
T ss_pred             CC-EeecCCCCcCCCCEECCCCCCCcc------------CCCCCCCCcCcCCCCCCCCEEeeCCcCCCCCceE-ECCCCC
Confidence            33 554332       24555555544            43221246688888999999983   22256899 999999


Q ss_pred             CC
Q psy15473        181 GG  182 (190)
Q Consensus       181 ~G  182 (190)
                      +|
T Consensus       125 ~g  126 (186)
T 1z1y_A          125 VP  126 (186)
T ss_dssp             EE
T ss_pred             cc
Confidence            98

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.63  E-value=5.1e-09  Score=78.77  Aligned_cols=67  Identities=25%  Similarity=0.643  Sum_probs=47.0

Q ss_pred             CCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCC---CCCCC--CCceecCCCCeeeCCCCCCC
Q psy15473        106 CNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQC---PCPNQ--GPCVQLDDDQVVCSECPRGY  180 (190)
Q Consensus       106 c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~---~C~~~--g~C~~~~~~~~~C~~C~~G~  180 (190)
                      .+|.+++ .|.  .+.|.|.++|.+.      ..|+|..|+.+...|...   +|.++  |+|..     ++| .|.+||
T Consensus       143 ~~Csg~G-~C~--~g~C~C~~gw~~~------~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~-----g~C-~C~~G~  207 (217)
T 2p28_B          143 IICSGLG-DCV--CGQCLCHTSDVPG------KLIYGQYCECDTINCERYNGQVCGGPGRGLCFC-----GKC-RCHPGF  207 (217)
T ss_dssp             CBGGGTE-EEE--TTEEEECCCCSTT------CCEESTTSCEESSCSCEETTEETTCTTTEEEET-----TEE-EECTTE
T ss_pred             CCCCCCC-EEe--CCceECCCCCCCc------ccEECCCcccCCccCCCCCCCCCCCCCCcEEeC-----Cee-ECCCCC
Confidence            3466544 675  4688888886442      346777776444556543   58777  99984     589 899999


Q ss_pred             CCCCCCC
Q psy15473        181 GGEKMSP  187 (190)
Q Consensus       181 ~G~~C~~  187 (190)
                      +|..|+.
T Consensus       208 ~G~~C~~  214 (217)
T 2p28_B          208 EGSACQH  214 (217)
T ss_dssp             ESTTSCE
T ss_pred             ccCCcCC
Confidence            9999985

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.59  E-value=6.4e-09  Score=70.97  Aligned_cols=50  Identities=24%  Similarity=0.593  Sum_probs=37.0

Q ss_pred             CCCCCccCCCCcc---cCCCCCCCCCCcC-CCCCCCCCceecCCCCeeeCCCCCCCCCCC
Q psy15473        129 GGDNCERCARGYY---GNALEGAVTDCKQ-CPCPNQGPCVQLDDDQVVCSECPRGYGGEK  184 (190)
Q Consensus       129 ~G~~C~~C~~G~~---g~~c~~~~~~C~~-~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~  184 (190)
                      .+..| .|++||.   |..| .++++|.. .+|  +++|++.. +.|+| .|++||+|..
T Consensus        59 ~~y~C-~C~~Gy~~~~g~~C-~dideC~~~~~C--~~~C~n~~-g~y~C-~C~~G~~g~~  112 (118)
T 1dx5_I           59 TQASC-ECPEGYILDDGFIC-TDIDECENGGFC--SGVCHNLP-GTFEC-ICGPDSALAG  112 (118)
T ss_dssp             STTCE-ECCTTEEEETTTEE-EECCHHHHCSSC--SSEEEECS-SSEEE-EECSSSSCEE
T ss_pred             CCeEe-ECCCCccCCCCCcc-ccccccCCCCCC--cCeEEeCC-CCEEE-ECCCCCccCC
Confidence            34556 5777776   5556 36678876 788  68999875 67999 9999998753

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.54  E-value=7.6e-08  Score=52.32  Aligned_cols=38  Identities=29%  Similarity=0.675  Sum_probs=32.9

Q ss_pred             CCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        148 AVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       148 ~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ++++|.+.||.++|+|++.. +.++| .|++||+|.+|+.
T Consensus         2 d~d~C~~~pC~ngg~C~~~~-~~~~C-~C~~G~~G~~Ce~   39 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDI-NSYEC-WCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEET-TEEEE-ECCTTCCSTTSCC
T ss_pred             ccccCCCCCCCCCCEeEcCC-CceEe-ECCCCCcCCccCC
Confidence            35678889999999999875 66999 9999999999974

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.53  E-value=2.6e-08  Score=74.91  Aligned_cols=98  Identities=21%  Similarity=0.431  Sum_probs=56.2

Q ss_pred             ceeecCCCCCCCCCccCCCCcccCCCCCCCCCCc----CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCcc
Q psy15473          3 RRCICQDNTGGDNCERCARGYYGNALEGAVTDCK----QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLA   78 (190)
Q Consensus         3 ~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~----~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~   78 (190)
                      +.|.|.+||+|.+|+ |+.+.+.....  ...|.    ..+|.++|+|+.            ..|.|.++|.+       
T Consensus       107 g~C~C~~G~~G~~Ce-c~~~~~~~~~~--~~~C~~~~~~~~Csg~G~C~~------------g~C~C~~gw~~-------  164 (217)
T 2p28_B          107 GICRCDTGYIGKNCE-CQTQGRSSQEL--EGSCRKDNNSIICSGLGDCVC------------GQCLCHTSDVP-------  164 (217)
T ss_dssp             TEEEECTTEESTTSC-EECCCCC-GGG--GGGGBSSTTSCBGGGTEEEET------------TEEEECCCCST-------
T ss_pred             CEEECCCCccCCccc-ccCcccccccC--CCcCCCCCCCCCCCCCCEEeC------------CceECCCCCCC-------
Confidence            578888888888886 55443221100  01243    467888888873            25777766532       


Q ss_pred             ccCCCccCCCCcccCCCCCCCCCCcccC---CCcCC--CCCccCCCCeeeCCCCCCCCCCc
Q psy15473         79 LTRQTHYQLTGYHHEPTSGGAFSRCVPC---NCNGH--ADICDAESGRCICQDNTGGDNCE  134 (190)
Q Consensus        79 ~~~~~~~C~~G~~g~~~~~~~~~~C~~c---~C~~~--~~~C~~~~g~C~C~~g~~G~~C~  134 (190)
                              ...|+|..|+. ....|...   .|.++  + +|+  .+.|.|.++|+|..|+
T Consensus       165 --------~~~~~G~~Ce~-~~~~C~~~~g~~C~~~~~G-~C~--~g~C~C~~G~~G~~C~  213 (217)
T 2p28_B          165 --------GKLIYGQYCEC-DTINCERYNGQVCGGPGRG-LCF--CGKCRCHPGFEGSACQ  213 (217)
T ss_dssp             --------TCCEESTTSCE-ESSCSCEETTEETTCTTTE-EEE--TTEEEECTTEESTTSC
T ss_pred             --------cccEECCCccc-CCccCCCCCCCCCCCCCCc-EEe--CCeeECCCCCccCCcC
Confidence                    12366766652 12345432   46654  3 665  3677777777777764

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.32  E-value=1.8e-07  Score=54.68  Aligned_cols=49  Identities=18%  Similarity=0.305  Sum_probs=32.6

Q ss_pred             cCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCC
Q psy15473         25 GNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRG   76 (190)
Q Consensus        25 g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~   76 (190)
                      |..|+.++++|.+.||+|+|+|.......   ..+.+.|.|+++|.|.+|+.
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d---~~~~y~C~C~~g~~G~~CE~   49 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLS---NPSRYLCKCPNEFTGDRCQN   49 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC-----CCCEEEEECTTEESTTSCE
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccC---CCCCEeEeCCCCCcCCCcCc
Confidence            45677888999999999999996543210   11236787777777766643

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.19  E-value=8.1e-07  Score=62.33  Aligned_cols=50  Identities=14%  Similarity=0.422  Sum_probs=34.8

Q ss_pred             CCccCCCCccc---------CCCCCCCCCCcCC---CCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         15 NCERCARGYYG---------NALEGAVTDCKQC---PCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        15 ~C~~C~~g~~g---------~~c~~~~~~C~~~---~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      .| .|++||.|         ..|+ ++++|...   +|.++++|++..+.        +.|.|+++|.|..+
T Consensus        20 ~C-~C~~G~~g~~~~~~~~~~~C~-dideC~~~~~~~C~~~~~C~n~~g~--------y~C~C~~Gy~g~~~   81 (143)
T 2bou_A           20 AC-RCNPGFSSFSEIITTPMETCD-DINECATLSKVSCGKFSDCWNTEGS--------YDCVCSPGYEPVSG   81 (143)
T ss_dssp             CE-EECTTEECSSSSBCSTTCCCE-ECCGGGC----CCCTTEEEEECSSC--------EEEEECTTEEETTC
T ss_pred             EE-eCCCCCcCccccccCCCCcCC-ccccccCCCCCCCCCCCEEEcCCCC--------eEeECCCCcccCcC
Confidence            45 56666666         3453 56789875   89999999987754        57888877776543

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.18  E-value=9.3e-07  Score=51.33  Aligned_cols=38  Identities=29%  Similarity=0.717  Sum_probs=30.6

Q ss_pred             CCCCcCC---CCCCCCCcee-cCCCCeeeCCCCCCCCCCCCCC
Q psy15473        149 VTDCKQC---PCPNQGPCVQ-LDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       149 ~~~C~~~---~C~~~g~C~~-~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      +++|.+.   ||.++|+|+. ...+.++| .|++||+|.+|+.
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C-~C~~G~~G~~Ce~   44 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESLDSYTC-NCVIGYSGDRCQT   44 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSSSCEEE-ECCTTCCSSSSCC
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCCCCEEE-ECCCCCcCCcCCc
Confidence            4567776   9999999983 23356999 9999999999975

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.18  E-value=2.3e-07  Score=77.35  Aligned_cols=77  Identities=27%  Similarity=0.656  Sum_probs=31.6

Q ss_pred             ccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCc
Q psy15473         84 HYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPC  163 (190)
Q Consensus        84 ~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C  163 (190)
                      ..|..+|.|..|+.   +.|.. +|. ++ +|.. .+.|.|+++|+|..|+.              ..|.+ +|.++|+|
T Consensus       379 ~~C~~~~~g~~c~~---~~C~~-~C~-nG-~C~~-~~~C~C~~G~~G~~C~~--------------~~C~~-~C~~~g~C  436 (463)
T 2wg3_C          379 EECRATVQPAQTLT---SECSR-LCR-NG-YCTP-TGKCCCSPGWEGDFCRT--------------AKCEP-ACRHGGVC  436 (463)
T ss_dssp             GGGCCCCCCCCCCC---CHHHH-HCC-SE-EECT-TSCEEECTTEESTTSCE--------------ECC-----------
T ss_pred             ccCCCCCcCCCCcc---ccccC-CCC-CC-ccCC-CCeECCCCCcCCCcCCc--------------CcCCC-CCCCCCEE
Confidence            46889999988753   56754 466 34 7764 35777777777776631              34666 89999999


Q ss_pred             eecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        164 VQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       164 ~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      +..    ++| .|++||+|.+|+.
T Consensus       437 ~~~----~~C-~C~~G~~G~~C~~  455 (463)
T 2wg3_C          437 VRP----NKC-LCKKGYLGPQCEQ  455 (463)
T ss_dssp             ------------------------
T ss_pred             CCC----CEE-ECCCCcccCCCCC
Confidence            864    689 9999999999985

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.16  E-value=4.9e-07  Score=77.65  Aligned_cols=52  Identities=23%  Similarity=0.522  Sum_probs=39.6

Q ss_pred             CCCccCCCCccc--CCCCCCCCCCcCCC--CCCCC---CceecCCcccccCCCceeEe-ecCCCCCCCC
Q psy15473         14 DNCERCARGYYG--NALEGAVTDCKQCP--CPNQG---PCVQLDDDQVSNLGNRTRIR-IKSALGGNRT   74 (190)
Q Consensus        14 ~~C~~C~~g~~g--~~c~~~~~~C~~~~--C~~~g---~C~~~~~~~~~~~~~~~~c~-c~~~~~g~~c   74 (190)
                      ..|..|++||+|  ..|+ .+++|...|  |.+++   +|++...+        +.|. |+++|.|..+
T Consensus        25 y~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gs--------Y~C~~C~~Gy~G~~c   84 (634)
T 1yo8_A           25 WSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPG--------FHCLPCPPRYRGNQP   84 (634)
T ss_dssp             EEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSS--------EEECCCCTTEEECCC
T ss_pred             eECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCc--------eecccCCCCcccCcc
Confidence            567788999988  6776 678999888  99998   89987654        5676 7766665443

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.12  E-value=1.9e-06  Score=48.20  Aligned_cols=36  Identities=25%  Similarity=0.550  Sum_probs=28.7

Q ss_pred             CCcCC---CCCCCCCcee-cCCCCeeeCCCCCCCCCCCCCC
Q psy15473        151 DCKQC---PCPNQGPCVQ-LDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       151 ~C~~~---~C~~~g~C~~-~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      +|.+.   ||.++|+|+. ...+.++| .|++||+|.+|+.
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C-~C~~G~~G~~Ce~   41 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLDSYTC-NCVIGYSGDRCQT   41 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTSSEEE-ECCTTEETTTTCE
T ss_pred             CcccCCCCCCCCCCEEEeecCCCCEEE-EcCCCCcCCcCCc
Confidence            35565   8999999983 23356999 9999999999974

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.06  E-value=1.2e-06  Score=49.29  Aligned_cols=37  Identities=32%  Similarity=0.649  Sum_probs=29.4

Q ss_pred             CCCcC---CCCCCCCCceecC-CCCeeeCCCCCCCCCCCCCCC
Q psy15473        150 TDCKQ---CPCPNQGPCVQLD-DDQVVCSECPRGYGGEKMSPG  188 (190)
Q Consensus       150 ~~C~~---~~C~~~g~C~~~~-~~~~~C~~C~~G~~G~~C~~c  188 (190)
                      +.|.+   .||.+ |+|.+.. .+.++| .|++||+|.+||.-
T Consensus         4 ~~C~~~~~~pC~n-G~C~~~~~~~~~~C-~C~~GytG~~Ce~~   44 (46)
T 1k36_A            4 TKCSSDMNGYCLH-GQCIYLVDMSQNYC-RCEVGYTGVRCEHF   44 (46)
T ss_dssp             ECCCTTCCSSCSS-EEEEEETTTTEEEE-EECTTCSSTTSCCC
T ss_pred             ccCCCCCCCCCCC-CEeeccCCCCCEEE-ECCCCCccCCCCcc
Confidence            45666   79998 8998743 245899 99999999999863

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.03  E-value=8.5e-07  Score=62.27  Aligned_cols=73  Identities=23%  Similarity=0.511  Sum_probs=47.4

Q ss_pred             CCCcccCCCcCCCCCccCCCC--eeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCC---CceecCCCCeeeC
Q psy15473        100 FSRCVPCNCNGHADICDAESG--RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQG---PCVQLDDDQVVCS  174 (190)
Q Consensus       100 ~~~C~~c~C~~~~~~C~~~~g--~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g---~C~~~~~~~~~C~  174 (190)
                      ++.|.+.+|..++ +|....+  .|.|++||+|.            .|+..+++|.++++.+++   +|++.....++| 
T Consensus        47 id~C~~~pC~n~g-~C~~~~g~y~C~C~~G~~G~------------~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C-  112 (142)
T 2c4f_L           47 GDQCASSPCQNGG-SCKDQLQSYICFCLPAFEGR------------NCETHKDDQLICVNENGGCEQYCSDHTGTKRSC-  112 (142)
T ss_dssp             CCGGGGCCCCTTC-EEEEETTEEEEECCTTEEST------------TSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEE-
T ss_pred             cCcCcCCCcCCCC-EEeCCCCCEEeeCCCCccCC------------ccccCccccccccCCCCCccCEeECCCCCCEEE-
Confidence            4678877787444 6754332  55655555554            444333445556666655   888776316999 


Q ss_pred             CCCCCCC----CCCCC
Q psy15473        175 ECPRGYG----GEKMS  186 (190)
Q Consensus       175 ~C~~G~~----G~~C~  186 (190)
                      .|++||.    |.+|+
T Consensus       113 ~C~~Gy~l~~dG~~C~  128 (142)
T 2c4f_L          113 RCHEGYSLLADGVSCT  128 (142)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             ECCCCceECCCCCCCC
Confidence            9999999    88875

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.01  E-value=5e-06  Score=52.70  Aligned_cols=51  Identities=31%  Similarity=0.769  Sum_probs=36.6

Q ss_pred             CCCCccCCCCcc--cCCCCCCCCCCc-CCCCCCCCCceecCCCCeeeCCCCCCCCCCCC
Q psy15473        130 GDNCERCARGYY--GNALEGAVTDCK-QCPCPNQGPCVQLDDDQVVCSECPRGYGGEKM  185 (190)
Q Consensus       130 G~~C~~C~~G~~--g~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C  185 (190)
                      +..| .|++||.  |..| .++++|. +.+|.+ ++|++.. +.|+| .|++||+|..-
T Consensus        25 ~y~C-~C~~Gy~~~g~~C-~dideC~~~~~C~~-~~C~n~~-g~y~C-~C~~G~~g~~~   78 (82)
T 1emn_A           25 SYRC-ECPFGYILAGNEC-VDTDECSVGNPCGN-GTCKNVI-GGFEC-TCEEGFEPGPM   78 (82)
T ss_dssp             CCCE-ECCTTEEEETTEE-EECCGGGTCCTTSS-SCEEECS-SSEEE-CCSSSSCCCSS
T ss_pred             CEEE-ECCCCeECCCCcc-CCcccccCCCCCCC-CEeECCC-CCEEe-ECCCCeEeCCC
Confidence            4455 4566664  5555 3567787 678876 6999876 66999 99999998653

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=97.97  E-value=1.1e-06  Score=64.90  Aligned_cols=73  Identities=27%  Similarity=0.636  Sum_probs=26.0

Q ss_pred             CCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCC-CCCcC--CCCCCCCCceecCCCCeeeCC
Q psy15473         99 AFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAV-TDCKQ--CPCPNQGPCVQLDDDQVVCSE  175 (190)
Q Consensus        99 ~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~-~~C~~--~~C~~~g~C~~~~~~~~~C~~  175 (190)
                      .++.|.+.+|...+ +|....         .+..| .|++||.|..|+..+ ++|..  .+|.+  +|++.. +.|+| .
T Consensus        41 dideC~~~pC~ngg-~C~n~~---------g~y~C-~C~~Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~-gsy~C-~  105 (195)
T 1nfu_B           41 DGDQCETSPCQNQG-KCKDGL---------GEYTC-TCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQ-NSVVC-S  105 (195)
T ss_dssp             ---------------------------------------------------CCGGGTGGGGCSS--EEEEET-TEEEE-E
T ss_pred             CCcccCCCCCCCCC-EeECCC---------CCeeE-eCCCCceeccccccccccccCCCCCCCC--EeECCC-CCeEE-E
Confidence            34778877787444 664432         23445 455666666665545 56765  45764  898876 66999 9


Q ss_pred             CCCCCC----CCCCC
Q psy15473        176 CPRGYG----GEKMS  186 (190)
Q Consensus       176 C~~G~~----G~~C~  186 (190)
                      |++||.    |.+|+
T Consensus       106 C~~Gy~l~~dG~~C~  120 (195)
T 1nfu_B          106 CARGYTLADNGKACI  120 (195)
T ss_dssp             CCTTEEECTTSSCEE
T ss_pred             CCCCceeCCCCCccc
Confidence            999999    88885

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.96  E-value=6.5e-07  Score=51.78  Aligned_cols=32  Identities=28%  Similarity=0.612  Sum_probs=25.8

Q ss_pred             CCCCCCCCceec---CCCCeeeCCCCCCCCCCCCCC
Q psy15473        155 CPCPNQGPCVQL---DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       155 ~~C~~~g~C~~~---~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      .||.|+|+|++.   ..+.++| .|++||+|.+||.
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C-~C~~Gf~G~~Ce~   48 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSC-ECAIGFMGQRCEY   48 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEE-ECCTTEESTTSCE
T ss_pred             CcCCCCCEEecCccCCCCCEEE-ECCCCCcCCCCcc
Confidence            478899999862   1235899 9999999999985

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.93  E-value=1.3e-06  Score=52.14  Aligned_cols=38  Identities=24%  Similarity=0.701  Sum_probs=32.6

Q ss_pred             CCCCCcCCCCCCC--CCceecCCCCeeeCCCCCCCC-CCCCCC
Q psy15473        148 AVTDCKQCPCPNQ--GPCVQLDDDQVVCSECPRGYG-GEKMSP  187 (190)
Q Consensus       148 ~~~~C~~~~C~~~--g~C~~~~~~~~~C~~C~~G~~-G~~C~~  187 (190)
                      .+++|.+.||.++  |+|++.. +.|+| .|++||+ |.+|+.
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~-g~y~C-~C~~Gy~~G~~C~~   50 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETN-SGYIC-RCNQGYRISLDGTG   50 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECS-SEEEE-ECCTTEEEEECSSS
T ss_pred             CCCcCcCCCCcCCCccccccCC-CceEe-ECCCCCccCCCCCC
Confidence            4577989999998  8999876 56999 9999999 999964

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.91  E-value=1.9e-05  Score=62.38  Aligned_cols=69  Identities=28%  Similarity=0.632  Sum_probs=49.4

Q ss_pred             CCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcC---CCCCCCCCceecCCCCeeeCCC
Q psy15473        100 FSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ---CPCPNQGPCVQLDDDQVVCSEC  176 (190)
Q Consensus       100 ~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~---~~C~~~g~C~~~~~~~~~C~~C  176 (190)
                      .+.|.+.+|.+.+ +|...         ..+..| .|++||.|..|+.++++|..   .+|.+  +|.+.. +.++| .|
T Consensus         5 ~~~C~~~pC~~~g-~C~~~---------~~~~~C-~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~-g~~~C-~C   69 (317)
T 3h5c_B            5 GSPCISQPCLHNG-SCQDS---------IWGYTC-TCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQ-ESYTC-SC   69 (317)
T ss_dssp             -CCTTSCCCTTTC-CCCCC---------SSSCCC-CCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCS-SSCEE-EC
T ss_pred             CCcCCCCCCCCCC-EeECC---------CCCeEE-ECCCCCcCCccccCcccCCCCCCCCCcC--ccccCC-CeeEE-ec
Confidence            3567777777433 66432         234566 67777777778777888986   68876  898875 66999 99


Q ss_pred             CCCCCCC
Q psy15473        177 PRGYGGE  183 (190)
Q Consensus       177 ~~G~~G~  183 (190)
                      ++||.|.
T Consensus        70 ~~g~~~~   76 (317)
T 3h5c_B           70 AQGYRLG   76 (317)
T ss_dssp             CTTEECC
T ss_pred             ccccccc
Confidence            9999874

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.91  E-value=1.6e-06  Score=60.29  Aligned_cols=72  Identities=28%  Similarity=0.650  Sum_probs=25.4

Q ss_pred             CCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCC-CCCcC--CCCCCCCCceecCCCCeeeCCC
Q psy15473        100 FSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAV-TDCKQ--CPCPNQGPCVQLDDDQVVCSEC  176 (190)
Q Consensus       100 ~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~-~~C~~--~~C~~~g~C~~~~~~~~~C~~C  176 (190)
                      ++.|.+.+|.+++ +|...         ..+..| .|++||.|..|+..+ +.|..  .+|.+  +|++.. +.++| .|
T Consensus        42 ~d~C~~~pC~n~g-~C~~~---------~~~y~C-~C~~G~~G~~C~~~i~d~C~~~~~~C~~--~C~~~~-g~y~C-~C  106 (134)
T 2vh0_B           42 GDQCETSPCQNQG-KCKDG---------LGEYTC-TCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQ-NSVVC-SC  106 (134)
T ss_dssp             --------------------------------------------------CCGGGTGGGGCSS--EEEEET-TEEEE-EC
T ss_pred             cCcCCCCCCCCcC-CcccC---------CCCEEe-eCCCCccCCccccCCCCccccCCCCCCC--EeECCC-CCEEE-EC
Confidence            4677777777433 66443         223444 455566666665444 55765  45754  898875 66999 99


Q ss_pred             CCCCC----CCCCC
Q psy15473        177 PRGYG----GEKMS  186 (190)
Q Consensus       177 ~~G~~----G~~C~  186 (190)
                      ++||+    |.+|+
T Consensus       107 ~~Gy~l~~~g~~C~  120 (134)
T 2vh0_B          107 ARGYTLADNGKACI  120 (134)
T ss_dssp             CTTEEECTTSSCEE
T ss_pred             CCCcEECCCCCccC
Confidence            99999    88875

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.91  E-value=7.4e-06  Score=57.70  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=16.8

Q ss_pred             CCCCCCcCCCCCCCCCceecCCc
Q psy15473         30 GAVTDCKQCPCPNQGPCVQLDDD   52 (190)
Q Consensus        30 ~~~~~C~~~~C~~~g~C~~~~~~   52 (190)
                      .++++|.+.||.++++|++..++
T Consensus        46 ~dideC~~~pC~n~g~C~~~~~~   68 (146)
T 1x7a_L           46 VDGDQCEPNPCLNGGLCKDDINS   68 (146)
T ss_dssp             ----CCSSCSSCTTCEEEECSSC
T ss_pred             CCcCcCCCCCCCCCCEeECCCCC
Confidence            35789999999999999987654

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.89  E-value=1.5e-05  Score=42.90  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=27.4

Q ss_pred             CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         31 AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        31 ~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      ++++|.+.||+++++|++..+.        +.|.|+++|.|.+|
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~--------~~C~C~~G~~G~~C   37 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINS--------YECWCPFGFEGKNC   37 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTE--------EEEECCTTCCSTTS
T ss_pred             ccccCCCCCCCCCCEeEcCCCc--------eEeECCCCCcCCcc
Confidence            4578999999999999987643        56777777766554

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=97.89  E-value=4.2e-06  Score=58.98  Aligned_cols=70  Identities=29%  Similarity=0.672  Sum_probs=44.3

Q ss_pred             CCCCcccCCCcCCCCCccCCC--CeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcC--CCCCCCCCc-eecCCCCeee
Q psy15473         99 AFSRCVPCNCNGHADICDAES--GRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ--CPCPNQGPC-VQLDDDQVVC  173 (190)
Q Consensus        99 ~~~~C~~c~C~~~~~~C~~~~--g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~--~~C~~~g~C-~~~~~~~~~C  173 (190)
                      .++.|.+.+|.+++ +|....  ..|.|++||+|..|+            . +++|..  .+|.+  +| ++.. +.++|
T Consensus        47 dideC~~~pC~n~g-~C~~~~~~y~C~C~~G~~G~~C~------------~-~deC~~~~~~C~~--~C~~n~~-g~y~C  109 (146)
T 1x7a_L           47 DGDQCEPNPCLNGG-LCKDDINSYECWCQVGFEGKNCE------------L-DATCNIKNGRCKQ--FCKTGAD-SKVLC  109 (146)
T ss_dssp             ---CCSSCSSCTTC-EEEECSSCEEEECCSSEESTTTC------------E-ECCTTSGGGSCSS--BCCCCSS-SCCCC
T ss_pred             CcCcCCCCCCCCCC-EeECCCCCEEEecCCCCcCCcCC------------C-CccccCCCCCCcC--CCCCCCC-CCEEe
Confidence            34778877887544 775433  266666666665553            1 245654  35654  88 6655 67999


Q ss_pred             CCCCCCCC----CCCCC
Q psy15473        174 SECPRGYG----GEKMS  186 (190)
Q Consensus       174 ~~C~~G~~----G~~C~  186 (190)
                       .|++||+    |.+|+
T Consensus       110 -~C~~Gy~l~~dG~~C~  125 (146)
T 1x7a_L          110 -SCTTGYRLAPDQKSCK  125 (146)
T ss_dssp             -BCCTTEEECTTSSSEE
T ss_pred             -EcCCCcEeCCCCCcCC
Confidence             9999999    88775

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.87  E-value=2.9e-06  Score=51.01  Aligned_cols=37  Identities=22%  Similarity=0.696  Sum_probs=30.3

Q ss_pred             CCCcCCCCCCCCCceec----CCCCeeeCCCCCCCCCCCCCC
Q psy15473        150 TDCKQCPCPNQGPCVQL----DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       150 ~~C~~~~C~~~g~C~~~----~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ++|.+.||.++|+|++.    ..+.++| .|++||+|.+|+.
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C-~C~~Gf~G~~Ce~   47 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLC-KCQPGFTGARCTE   47 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEE-ECCTTEESTTSCE
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEE-ECCCCCcCCccCc
Confidence            45778899999999862    2356999 9999999999973

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=97.84  E-value=4.5e-06  Score=58.54  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=25.0

Q ss_pred             CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCC
Q psy15473         31 AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNR   73 (190)
Q Consensus        31 ~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~   73 (190)
                      ++++|.+.||+++++|++..++        +.|.|+++|.|..
T Consensus        46 did~C~~~pC~n~g~C~~~~g~--------y~C~C~~G~~G~~   80 (142)
T 2c4f_L           46 DGDQCASSPCQNGGSCKDQLQS--------YICFCLPAFEGRN   80 (142)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTE--------EEEECCTTEESTT
T ss_pred             ccCcCcCCCcCCCCEEeCCCCC--------EEeeCCCCccCCc
Confidence            5678999999999999987654        4565554444433

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.83  E-value=5.9e-06  Score=55.69  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             CCCCCcCCC--------CCCCCCceecCCcccccCCCceeEeecCCCCC
Q psy15473         31 AVTDCKQCP--------CPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG   71 (190)
Q Consensus        31 ~~~~C~~~~--------C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g   71 (190)
                      ++++|...|        |.++++|++..+.        +.|.|+++|.|
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~--------y~C~C~~G~~G   45 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGS--------FSCDCRSGWEG   45 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECCCSSC--------CCEEECTTEES
T ss_pred             ecccccCCCccccccccCCCcCCCCCCCCC--------cEeeCCCCCcC
Confidence            345787777        9999999876644        45555544444

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.74  E-value=6.8e-06  Score=52.51  Aligned_cols=72  Identities=21%  Similarity=0.534  Sum_probs=42.8

Q ss_pred             CCCcccCC--CcCCCCCccCCC--CeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCC--CCCCCCceecCCCCeee
Q psy15473        100 FSRCVPCN--CNGHADICDAES--GRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCP--CPNQGPCVQLDDDQVVC  173 (190)
Q Consensus       100 ~~~C~~c~--C~~~~~~C~~~~--g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~--C~~~g~C~~~~~~~~~C  173 (190)
                      +++|...+  |. ++ .|....  ..|.|++||++..       +.|..|+ ++++|...+  |. +++|++.. ++|+|
T Consensus         3 ideC~~~~~~C~-~g-~C~n~~g~y~C~C~~Gy~~~~-------~~g~~C~-dideC~~~~~~C~-~~~C~n~~-g~y~C   70 (86)
T 1lmj_A            3 IDECRISPDLCG-RG-QCVNTPGDFECKCDEGYESGF-------MMMKNCM-DIDECQRDPLLCR-GGVCHNTE-GSYRC   70 (86)
T ss_dssp             CCTTTTCSSTTT-TS-CEEEETTEEEECCCSSEEECT-------TTSSSEE-ECCHHHHCSSTTT-TSEEEEET-TEEEE
T ss_pred             cccccCCCCCCC-CC-EEECCCCCEEeeCCCCcCccC-------CCCCccC-CcccccCCCCcCC-CCEeEcCC-CCEEE
Confidence            35565433  54 33 564432  2555555554210       0144453 567787554  75 58999876 67999


Q ss_pred             CCCCCCCCCCC
Q psy15473        174 SECPRGYGGEK  184 (190)
Q Consensus       174 ~~C~~G~~G~~  184 (190)
                       .|++||++..
T Consensus        71 -~C~~G~~~~~   80 (86)
T 1lmj_A           71 -ECPPGHQLSP   80 (86)
T ss_dssp             -ESCTTSCCCS
T ss_pred             -ECcCCcccCC
Confidence             9999998854

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=97.72  E-value=4.8e-06  Score=55.55  Aligned_cols=49  Identities=27%  Similarity=0.737  Sum_probs=9.1

Q ss_pred             CCCCccCCCCccc---CCCCCCCCCCc-CCCCCCCCCceecCCCCeeeCCCCCCCCCCC
Q psy15473        130 GDNCERCARGYYG---NALEGAVTDCK-QCPCPNQGPCVQLDDDQVVCSECPRGYGGEK  184 (190)
Q Consensus       130 G~~C~~C~~G~~g---~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~  184 (190)
                      +..| .|++||.|   ..|+ ++++|. +.+|.  ++|++.. +.|+| .|++||.+..
T Consensus        49 ~y~C-~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~-gsy~C-~C~~Gy~~~~  101 (107)
T 2w2n_E           49 GYEC-LCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLE-GGYKC-QCEEGFQLDP  101 (107)
T ss_dssp             SCEE-ECCTTCEEETTTEEE-C-------------------------------------
T ss_pred             CeEE-ECCCCccccCCCccc-cccccCCCCCcC--CeeecCC-CCEEE-ECCCCceECC
Confidence            4455 45566655   4454 677886 36785  7898875 66999 9999998754

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.65  E-value=2.1e-05  Score=52.98  Aligned_cols=48  Identities=23%  Similarity=0.569  Sum_probs=28.6

Q ss_pred             CCCCccCCCCcccCCCCCC--CCCCcC--CCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473        130 GDNCERCARGYYGNALEGA--VTDCKQ--CPCPNQGPCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       130 G~~C~~C~~G~~g~~c~~~--~~~C~~--~~C~~~g~C~~~~~~~~~C~~C~~G~~G  182 (190)
                      +..| .|++||.|..|+..  +++|..  ..|.+  +|++.. +.|+| .|++||+|
T Consensus        34 ~y~C-~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~-g~y~C-~C~~G~~~   85 (114)
T 1aut_L           34 SFSC-DCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEV-GWRRC-SCAPGYKL   85 (114)
T ss_dssp             CCCE-EECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECS-SSEEE-ECCTTEEE
T ss_pred             CcEe-eCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCC-CCEEe-ECCCCeeE
Confidence            3344 35555555555422  234553  23432  898876 66999 99999994

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=97.60  E-value=9.2e-06  Score=59.93  Aligned_cols=23  Identities=30%  Similarity=0.660  Sum_probs=0.0

Q ss_pred             CCCCCCcCCCCCCCCCceecCCc
Q psy15473         30 GAVTDCKQCPCPNQGPCVQLDDD   52 (190)
Q Consensus        30 ~~~~~C~~~~C~~~g~C~~~~~~   52 (190)
                      .++++|.+.||.++++|++..+.
T Consensus        40 ~dideC~~~pC~ngg~C~n~~g~   62 (195)
T 1nfu_B           40 KDGDQCETSPCQNQGKCKDGLGE   62 (195)
T ss_dssp             -----------------------
T ss_pred             CCCcccCCCCCCCCCEeECCCCC
Confidence            35679999999999999887654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.58  E-value=8.1e-06  Score=68.04  Aligned_cols=76  Identities=22%  Similarity=0.589  Sum_probs=30.3

Q ss_pred             ccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCC
Q psy15473         17 ERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTS   96 (190)
Q Consensus        17 ~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~   96 (190)
                      ..|..+|+|..|+.  ++|.. +|.| |+|+..           ..|.                     |++||+|..|+
T Consensus       379 ~~C~~~~~g~~c~~--~~C~~-~C~n-G~C~~~-----------~~C~---------------------C~~G~~G~~C~  422 (463)
T 2wg3_C          379 EECRATVQPAQTLT--SECSR-LCRN-GYCTPT-----------GKCC---------------------CSPGWEGDFCR  422 (463)
T ss_dssp             GGGCCCCCCCCCCC--CHHHH-HCCS-EEECTT-----------SCEE---------------------ECTTEESTTSC
T ss_pred             ccCCCCCcCCCCcc--ccccC-CCCC-CccCCC-----------CeEC---------------------CCCCcCCCcCC
Confidence            37888999888775  35765 6886 677642           1344                     55666666664


Q ss_pred             CCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCc
Q psy15473         97 GGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCE  134 (190)
Q Consensus        97 ~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~  134 (190)
                      .   +.|.+ +|.+++ +|... ..|.|+++|+|..|+
T Consensus       423 ~---~~C~~-~C~~~g-~C~~~-~~C~C~~G~~G~~C~  454 (463)
T 2wg3_C          423 T---AKCEP-ACRHGG-VCVRP-NKCLCKKGYLGPQCE  454 (463)
T ss_dssp             E---ECC-------------------------------
T ss_pred             c---CcCCC-CCCCCC-EECCC-CEEECCCCcccCCCC
Confidence            2   45665 777544 78643 577777777777664

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.57  E-value=1.3e-05  Score=46.45  Aligned_cols=33  Identities=30%  Similarity=0.611  Sum_probs=26.8

Q ss_pred             CCCCCCCCCcee-cCCCCeeeCCCCCCCCCCCCCC
Q psy15473        154 QCPCPNQGPCVQ-LDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       154 ~~~C~~~g~C~~-~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      +.||.++|+|.. ...+.++| .|++||+|.+|+.
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C-~C~~GytG~~Ce~   44 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYAC-NCVVGYIGERCQY   44 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEE-EECTTEESTTSCE
T ss_pred             CCCCCCCeEEeeecCCCCEEE-ecCCCCcCCCCCc
Confidence            468999999983 22356899 9999999999985

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=97.56  E-value=2.1e-05  Score=50.28  Aligned_cols=50  Identities=28%  Similarity=0.709  Sum_probs=35.4

Q ss_pred             CCCCccCCCCcc----cCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCC
Q psy15473        130 GDNCERCARGYY----GNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMS  186 (190)
Q Consensus       130 G~~C~~C~~G~~----g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~  186 (190)
                      +..| .|++||.    |..|+ ++++|.+.+|.  ++|++.. ++|+| .|+ |+.|.+++
T Consensus        24 ~y~C-~C~~G~~~~~~g~~C~-dideC~~~~C~--~~C~n~~-g~y~C-~C~-g~~G~~~~   77 (87)
T 1z6c_A           24 DFEC-ECPEGYRYNLKSKSCE-DIDECSENMCA--QLCVNYP-GGYTC-YCD-GKKGFKLA   77 (87)
T ss_dssp             BCCC-SSSTTCEEETTTTEEE-CCCHHHHSCCS--SEECCCS-SSCCE-ECC-SSSCCBCC
T ss_pred             CEEE-ECCCCceECCCCCcCC-CcCeeCCCCCC--CEEEccC-CCEEE-ECC-CCcCCccc
Confidence            4455 4666666    45553 67888888886  7898876 67999 997 77776654

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=97.52  E-value=1.3e-05  Score=55.53  Aligned_cols=22  Identities=32%  Similarity=0.706  Sum_probs=0.0

Q ss_pred             CCCCCcCCCCCCCCCceecCCc
Q psy15473         31 AVTDCKQCPCPNQGPCVQLDDD   52 (190)
Q Consensus        31 ~~~~C~~~~C~~~g~C~~~~~~   52 (190)
                      ++++|.+.||.++++|++..++
T Consensus        41 d~d~C~~~pC~n~g~C~~~~~~   62 (134)
T 2vh0_B           41 DGDQCETSPCQNQGKCKDGLGE   62 (134)
T ss_dssp             ----------------------
T ss_pred             CcCcCCCCCCCCcCCcccCCCC
Confidence            5678999999999999876543

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=97.46  E-value=0.00016  Score=56.95  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=16.3

Q ss_pred             CCCCCcCCCCCCCCCceecCC
Q psy15473         31 AVTDCKQCPCPNQGPCVQLDD   51 (190)
Q Consensus        31 ~~~~C~~~~C~~~g~C~~~~~   51 (190)
                      +.++|.+.||.++++|.+...
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~   24 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIW   24 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSS
T ss_pred             cCCcCCCCCCCCCCEeECCCC
Confidence            357899999999999987654

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=97.38  E-value=9.4e-05  Score=46.65  Aligned_cols=54  Identities=26%  Similarity=0.629  Sum_probs=37.8

Q ss_pred             cCCCCCCCCCccCCCCcc--cCCCCCCCCCCc-CCCCCCCCCceecCCcccccCCCceeEeecCCCCC
Q psy15473          7 CQDNTGGDNCERCARGYY--GNALEGAVTDCK-QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG   71 (190)
Q Consensus         7 C~~g~~G~~C~~C~~g~~--g~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g   71 (190)
                      |.....+..| .|++||.  |..| .++++|. ..||.+ ++|++..++        +.|.|+++|.+
T Consensus        19 C~n~~g~y~C-~C~~Gy~~~g~~C-~dideC~~~~~C~~-~~C~n~~g~--------y~C~C~~G~~g   75 (82)
T 1emn_A           19 CINTDGSYRC-ECPFGYILAGNEC-VDTDECSVGNPCGN-GTCKNVIGG--------FECTCEEGFEP   75 (82)
T ss_dssp             ECCCSSCCCE-ECCTTEEEETTEE-EECCGGGTCCTTSS-SCEEECSSS--------EEECCSSSSCC
T ss_pred             EEecCCCEEE-ECCCCeECCCCcc-CCcccccCCCCCCC-CEeECCCCC--------EEeECCCCeEe
Confidence            3344446677 8999997  7777 4578897 788986 589987754        46666666554

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=97.35  E-value=0.00015  Score=46.25  Aligned_cols=21  Identities=29%  Similarity=0.771  Sum_probs=15.7

Q ss_pred             CCCCCcCCC--CCCCCCceecCCc
Q psy15473         31 AVTDCKQCP--CPNQGPCVQLDDD   52 (190)
Q Consensus        31 ~~~~C~~~~--C~~~g~C~~~~~~   52 (190)
                      ++++|...|  | ++++|++..++
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~   24 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGD   24 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTB
T ss_pred             ccccccCCCCCC-CCCEeECCCCC
Confidence            467888777  8 77889887654

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=97.32  E-value=0.00019  Score=41.36  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             CCCCcCC---CCCCCCCcee--cCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         32 VTDCKQC---PCPNQGPCVQ--LDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        32 ~~~C~~~---~C~~~g~C~~--~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      +++|.+.   ||+|+|+|+.  ..+.        +.|.|+++|.|.+|+
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~~~--------~~C~C~~G~~G~~Ce   43 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESLDS--------YTCNCVIGYSGDRCQ   43 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSSSC--------EEEECCTTCCSSSSC
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCCCC--------EEEECCCCCcCCcCC
Confidence            4678876   9999999984  3332        567776666665553

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.28  E-value=4.9e-05  Score=44.77  Aligned_cols=31  Identities=29%  Similarity=0.642  Sum_probs=25.2

Q ss_pred             CCCCCCCceec---CCCCeeeCCCCCCCCCCCCCC
Q psy15473        156 PCPNQGPCVQL---DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       156 ~C~~~g~C~~~---~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      +|.|+|+|+..   ....+.| .|++||+|.+||.
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C-~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSC-ECAIGFMGQRCEY   48 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEE-EECTTEESSSSCE
T ss_pred             cCCCCCEEeCCccCCCCCEEe-ECCCCCccCCCcc
Confidence            79999999832   2235899 9999999999985

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=97.27  E-value=2.4e-05  Score=55.01  Aligned_cols=44  Identities=30%  Similarity=0.683  Sum_probs=32.2

Q ss_pred             cCCCCcc---cCCCCCCCCCCcCCC--CCCCCCceecCCcccccCCCceeEeecCCCCC
Q psy15473         18 RCARGYY---GNALEGAVTDCKQCP--CPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG   71 (190)
Q Consensus        18 ~C~~g~~---g~~c~~~~~~C~~~~--C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g   71 (190)
                      .|++||.   |..|+ ++++|+..|  |++ ++|++..++        +.|.|+++|.+
T Consensus        91 ~C~~Gy~~~~g~~C~-dideC~~~~~~C~~-g~C~n~~g~--------y~C~C~~Gy~g  139 (147)
T 2w86_A           91 ICGKGYSRIKGTQCE-DIDECEVFPGVCKN-GLCVNTRGS--------FKCQCPSGMTL  139 (147)
T ss_dssp             TTCTTEEEEETTEEE-ECCHHHHSTTCSSS-SEEEEETTE--------EEEECCTTCCB
T ss_pred             cCCCccccCCCCccC-ccccccCCCCCCCC-CEEECCCCC--------EEeeCCCCCcc
Confidence            5889994   78886 788998544  986 589988765        56776666654

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=97.24  E-value=4.8e-05  Score=51.50  Aligned_cols=43  Identities=21%  Similarity=0.437  Sum_probs=30.0

Q ss_pred             cCCCCcc---cCCCCCCCCCCcC-CCCCCCCCceecCCcccccCCCceeEeecCCCCC
Q psy15473         18 RCARGYY---GNALEGAVTDCKQ-CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG   71 (190)
Q Consensus        18 ~C~~g~~---g~~c~~~~~~C~~-~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g   71 (190)
                      .|++||.   |..| .++++|.. .||  +++|++..++        +.|.|+++|.+
T Consensus        64 ~C~~Gy~~~~g~~C-~dideC~~~~~C--~~~C~n~~g~--------y~C~C~~G~~g  110 (118)
T 1dx5_I           64 ECPEGYILDDGFIC-TDIDECENGGFC--SGVCHNLPGT--------FECICGPDSAL  110 (118)
T ss_dssp             ECCTTEEEETTTEE-EECCHHHHCSSC--SSEEEECSSS--------EEEEECSSSSC
T ss_pred             ECCCCccCCCCCcc-ccccccCCCCCC--cCeEEeCCCC--------EEEECCCCCcc
Confidence            4788888   6666 35778876 788  5678877654        56777766654

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=97.16  E-value=0.0002  Score=45.49  Aligned_cols=31  Identities=23%  Similarity=0.641  Sum_probs=20.8

Q ss_pred             CCCCCcCCC--CCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473         31 AVTDCKQCP--CPNQGPCVQLDDDQVSNLGNRTRIRIKSALG   70 (190)
Q Consensus        31 ~~~~C~~~~--C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~   70 (190)
                      ++++|...|  |.+ ++|++..++        +.|.|+++|.
T Consensus         2 dideC~~~~~~C~~-g~C~n~~g~--------y~C~C~~Gy~   34 (86)
T 1lmj_A            2 DIDECRISPDLCGR-GQCVNTPGD--------FECKCDEGYE   34 (86)
T ss_dssp             CCCTTTTCSSTTTT-SCEEEETTE--------EEECCCSSEE
T ss_pred             ccccccCCCCCCCC-CEEECCCCC--------EEeeCCCCcC
Confidence            467888766  965 589988764        4566555543

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.08  E-value=0.00035  Score=38.74  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=21.2

Q ss_pred             CCcCC---CCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         34 DCKQC---PCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        34 ~C~~~---~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      +|.+.   ||+|+|+|+.....      ..+.|.|+++|.|.+|
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~------~~~~C~C~~G~~G~~C   39 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESL------DSYTCNCVIGYSGDRC   39 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTT------SSEEEECCTTEETTTT
T ss_pred             CcccCCCCCCCCCCEEEeecCC------CCEEEEcCCCCcCCcC
Confidence            56666   99999999742211      1256666555555444

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=96.98  E-value=0.00017  Score=51.34  Aligned_cols=60  Identities=22%  Similarity=0.547  Sum_probs=43.5

Q ss_pred             ceeecCCCCC-CCCCccC------------CC--CcccCC---CCCCCCCCcC--CCCCCCCCceecCCcccccCCCcee
Q psy15473          3 RRCICQDNTG-GDNCERC------------AR--GYYGNA---LEGAVTDCKQ--CPCPNQGPCVQLDDDQVSNLGNRTR   62 (190)
Q Consensus         3 ~~C~C~~g~~-G~~C~~C------------~~--g~~g~~---c~~~~~~C~~--~~C~~~g~C~~~~~~~~~~~~~~~~   62 (190)
                      ..|.|++||. |..|+.|            ++  ||.+..   +..++|+|+.  .+|++ ++|++..++        +.
T Consensus        75 ~~C~C~~G~~~~~~C~~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~-g~C~n~~gs--------y~  145 (162)
T 1uzk_A           75 ASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GKCINTFGS--------FQ  145 (162)
T ss_dssp             HHHHTTTCCEETTTTEECCCTTSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBT-SEEEECSSC--------EE
T ss_pred             ceeeCCCCCCcCCCcccCCCCCCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCC-CEeEcCCCC--------EE
Confidence            4688999998 8888754            44  898863   3357889985  45986 699998765        56


Q ss_pred             EeecCCCCC
Q psy15473         63 IRIKSALGG   71 (190)
Q Consensus        63 c~c~~~~~g   71 (190)
                      |.|+++|.+
T Consensus       146 C~C~~Gy~g  154 (162)
T 1uzk_A          146 CRCPTGYYL  154 (162)
T ss_dssp             EECCTTCCB
T ss_pred             eeCCCCccC
Confidence            777766655

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=96.98  E-value=0.00015  Score=43.06  Aligned_cols=36  Identities=17%  Similarity=0.388  Sum_probs=25.8

Q ss_pred             CCCCCcCCCCCCC--CCceecCCcccccCCCceeEeecCCCC-CCCC
Q psy15473         31 AVTDCKQCPCPNQ--GPCVQLDDDQVSNLGNRTRIRIKSALG-GNRT   74 (190)
Q Consensus        31 ~~~~C~~~~C~~~--g~C~~~~~~~~~~~~~~~~c~c~~~~~-g~~c   74 (190)
                      .+++|.+.||+++  ++|++..++        +.|.|+++|. |..|
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~--------y~C~C~~Gy~~G~~C   48 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSG--------YICRCNQGYRISLDG   48 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSE--------EEEECCTTEEEEECS
T ss_pred             CCCcCcCCCCcCCCccccccCCCc--------eEeECCCCCccCCCC
Confidence            4578999999999  899987654        4666655555 5444

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=96.97  E-value=0.0005  Score=38.34  Aligned_cols=37  Identities=27%  Similarity=0.519  Sum_probs=24.9

Q ss_pred             CCCCcC---CCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         32 VTDCKQ---CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        32 ~~~C~~---~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      +++|.+   .||.| |+|.+..+.      +.+.|.|+++|.|.+|+
T Consensus         3 i~~C~~~~~~pC~n-G~C~~~~~~------~~~~C~C~~GytG~~Ce   42 (46)
T 1k36_A            3 ITKCSSDMNGYCLH-GQCIYLVDM------SQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             EECCCTTCCSSCSS-EEEEEETTT------TEEEEEECTTCSSTTSC
T ss_pred             cccCCCCCCCCCCC-CEeeccCCC------CCEEEECCCCCccCCCC
Confidence            456777   89999 799875421      12567777777776654

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=96.81  E-value=0.00013  Score=41.88  Aligned_cols=35  Identities=14%  Similarity=0.223  Sum_probs=20.3

Q ss_pred             CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         37 QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        37 ~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      +.||+|+|+|+.......    ..+.|.|+++|.|.+|+
T Consensus        13 ~~pC~NGGtC~~~~~~~~----~~y~C~C~~Gf~G~~Ce   47 (52)
T 3ca7_A           13 AWYCLNDAHCFAVKIADL----PVYSCECAIGFMGQRCE   47 (52)
T ss_dssp             HHTSCTTCEEEEEEETTE----EEEEEECCTTEESTTSC
T ss_pred             CCcCCCCCEEecCccCCC----CCEEEECCCCCcCCCCc
Confidence            458999999986421000    12467666666655553

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=96.68  E-value=0.00045  Score=41.19  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=23.6

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      ++|.+.||+|+|+|+++.+..   ....+.|.|+++|.|.+|
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~---~~~~y~C~C~~Gf~G~~C   45 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLS---NPSRYLCKCQPGFTGARC   45 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSS---SSCCEEEECCTTEESTTS
T ss_pred             CCCCCCcCCCCcEEecCCccC---CCCCEEEECCCCCcCCcc
Confidence            568889999999998742100   001256666655555544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.51  E-value=0.0004  Score=56.21  Aligned_cols=50  Identities=26%  Similarity=0.694  Sum_probs=17.9

Q ss_pred             CCCccCCCCcc----cCCCCCCCCCCc-CCCCCCCCCceecCCCCeeeCCCCCCCC----CCCCC
Q psy15473        131 DNCERCARGYY----GNALEGAVTDCK-QCPCPNQGPCVQLDDDQVVCSECPRGYG----GEKMS  186 (190)
Q Consensus       131 ~~C~~C~~G~~----g~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~~C~~G~~----G~~C~  186 (190)
                      ..| .|++||.    |..| .++++|. +.+|.+.  |.+.. ++++| .|++||.    |..|+
T Consensus        24 ~~C-~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~~--C~~~~-g~~~C-~C~~g~~l~~d~~~C~   82 (386)
T 3v65_B           24 VQC-TCHTGYRLTEDGRTC-QDVNECAEEGYCSQG--CTNSE-GAFQC-WCEAGYELRPDRRSCK   82 (386)
T ss_dssp             ------------------------------CCTTE--EC------CCE-ECCTTEEECTTSSCEE
T ss_pred             cEe-ECCCCceECCCCCcc-CccceeCCcCcccCc--CCCCC-CCCeE-EECCCceEcCCCCeEC
Confidence            455 5666665    6666 4678886 5678753  88765 66999 9999998    77774

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.28  E-value=0.00046  Score=45.78  Aligned_cols=50  Identities=22%  Similarity=0.538  Sum_probs=13.8

Q ss_pred             CCCCCCCCccCCCCccc---CCCCCCCCCCcC-CCCCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473          9 DNTGGDNCERCARGYYG---NALEGAVTDCKQ-CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG   70 (190)
Q Consensus         9 ~g~~G~~C~~C~~g~~g---~~c~~~~~~C~~-~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~   70 (190)
                      ....+..| .|++||.|   ..|+ ++++|.. .+|.  ++|++..++        +.|.|+++|.
T Consensus        45 n~~g~y~C-~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gs--------y~C~C~~Gy~   98 (107)
T 2w2n_E           45 DLKIGYEC-LCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGG--------YKCQCEEGFQ   98 (107)
T ss_dssp             CCSBSCEE-ECCTTCEEETTTEEE-C----------------------------------------
T ss_pred             eCCCCeEE-ECCCCccccCCCccc-cccccCCCCCcC--CeeecCCCC--------EEEECCCCce
Confidence            33445556 68888887   5666 6788874 6786  578877654        3555555544

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=96.27  E-value=0.0027  Score=35.99  Aligned_cols=31  Identities=26%  Similarity=0.631  Sum_probs=24.0

Q ss_pred             CCCCCCCCcee-cCCCCeeeCCCCCCCCCCCCCC
Q psy15473        155 CPCPNQGPCVQ-LDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       155 ~~C~~~g~C~~-~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      .-|.+ |+|.. ...+...| .|++||+|.+||.
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C-~C~~gy~G~RCe~   45 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSC-VCDEGYIGARCER   45 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEE-CCCTTEETTTTCE
T ss_pred             CcccC-CEEEeEcCCCCeEE-ECCCCcccCCCCe
Confidence            45877 89953 33345899 9999999999985

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.23  E-value=0.0017  Score=52.85  Aligned_cols=44  Identities=25%  Similarity=0.741  Sum_probs=30.6

Q ss_pred             cCCCCcc---cCCCCCCCCCCc-CCCCCCCCCceecCCCCeeeCCCCCCCCCC
Q psy15473        135 RCARGYY---GNALEGAVTDCK-QCPCPNQGPCVQLDDDQVVCSECPRGYGGE  183 (190)
Q Consensus       135 ~C~~G~~---g~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~  183 (190)
                      .|++||.   |..|+ ++++|. +.+|.+  +|.+.. ++|+| .|++||.+.
T Consensus        24 ~C~~G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~-g~~~C-~C~~g~~~~   71 (400)
T 3p5b_L           24 LCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLE-GGYKC-QCEEGFQLD   71 (400)
T ss_dssp             ECCTTEEECSSSCEE-ECCCCSTTSSCSS--CCBCCS-SSCBC-CCCTTCCCC
T ss_pred             ECCCCCCcCCCCccc-CchhhhccCCCCC--ccCCCc-cceee-ecccccccc
Confidence            3444554   44453 567886 467864  898875 67999 999999865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.21  E-value=0.08  Score=46.14  Aligned_cols=54  Identities=28%  Similarity=0.752  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCccCCCCcc---cCCCCCCCCCCc-CCCCCCCCCceecCCCCeeeCCCCCCCCCC
Q psy15473        124 CQDNTGGDNCERCARGYY---GNALEGAVTDCK-QCPCPNQGPCVQLDDDQVVCSECPRGYGGE  183 (190)
Q Consensus       124 C~~g~~G~~C~~C~~G~~---g~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~  183 (190)
                      |.....+..| .|++||.   |..|+ ++++|. +.+|.  .+|++.. ++|+| .|++||.+.
T Consensus       308 C~~~~~~~~C-~C~~G~~~~~~~~C~-dideC~~~~~C~--~~C~n~~-g~y~C-~C~~G~~~~  365 (699)
T 1n7d_A          308 CNDLKIGYEC-LCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLE-GGYKC-QCEEGFQLD  365 (699)
T ss_dssp             CCCCTTCCCC-CCCSSSCCCSSSCCC-CCCCCSSSSSCT--TTCCBCS-SCBCC-CCCSSCBCC
T ss_pred             cccCCCCcEE-eCCCCeEcCCCCccc-CccccCCCCccc--cccccCC-CCeee-eeecccccC
Confidence            4444556677 6888887   55665 678887 45675  4888875 67999 999999863

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.11  E-value=0.0013  Score=46.50  Aligned_cols=36  Identities=25%  Similarity=0.704  Sum_probs=30.3

Q ss_pred             CCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        150 TDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       150 ~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ..|.+.+|.++|+|.+.. +.+.| .|++||.|.+||.
T Consensus       120 ~~c~~~~C~~~g~C~~~~-~~~~c-~C~~g~~G~~Ce~  155 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLETI-GNYTC-SCYPGFYGPECEY  155 (162)
T ss_dssp             CCCCTTGGGGSEEEEECS-SSEEE-EECTTEESTTSCE
T ss_pred             CCCcCCCCCCCCEEecCC-CCceE-eCCCCCcCccccc
Confidence            346777898899999876 55999 9999999999973

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=95.66  E-value=0.0038  Score=35.76  Aligned_cols=33  Identities=15%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         37 QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        37 ~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      +.||.|+|+|+.....      +.+.|.|+++|.|.+|+
T Consensus        11 ~~pC~nGG~C~~~~~~------~~~~C~C~~GytG~~Ce   43 (53)
T 1nql_B           11 DGYCLHDGVCMYIEAL------DKYACNCVVGYIGERCQ   43 (53)
T ss_dssp             CCEECTTCEEEEETTT------TEEEEEECTTEESTTSC
T ss_pred             CCCCCCCeEEeeecCC------CCEEEecCCCCcCCCCC
Confidence            5789999999843221      12567776666665553

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=95.58  E-value=0.0072  Score=34.15  Aligned_cols=31  Identities=29%  Similarity=0.637  Sum_probs=23.7

Q ss_pred             CCCCCCCCceec-CCCCeeeCCCCCCCCCCCCCC
Q psy15473        155 CPCPNQGPCVQL-DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       155 ~~C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ..|.++ +|... ....+.| .|++||+|.+|+.
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C-~C~~gy~G~RCe~   45 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPAC-VCHSGYVGARCEH   45 (50)
T ss_pred             CcccCC-EEeeccCCCCeEE-ECCCCCcccCCCc
Confidence            357775 99753 2245899 9999999999985

>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*

Probab=95.48  E-value=0.0038  Score=49.55  Aligned_cols=42  Identities=33%  Similarity=0.941  Sum_probs=36.2

Q ss_pred             ccCCCcCCCCCccCCCC--eeeCCCCCCCCCCccCCCCcccCCC
Q psy15473        104 VPCNCNGHADICDAESG--RCICQDNTGGDNCERCARGYYGNAL  145 (190)
Q Consensus       104 ~~c~C~~~~~~C~~~~g--~C~C~~g~~G~~C~~C~~G~~g~~c  145 (190)
                      ..|.|++|++.|...++  .|.|++++.|..|+.|.++|++.+=
T Consensus       268 G~C~CnGHA~~C~~~~g~~~C~C~HnT~G~~Ce~C~p~y~~~pw  311 (338)
T 3tbd_A          268 GRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSW  311 (338)
T ss_dssp             EEECCTTBCSCEEEETTEEEECCCTTEESTTSCEECTTCBSSCC
T ss_pred             ccccccCCcCccCCCCCCceecCCCCCCCCCCcccCccccCCCC
Confidence            45789999999987665  6999999999999999999988653

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=95.34  E-value=0.01  Score=33.48  Aligned_cols=31  Identities=29%  Similarity=0.678  Sum_probs=23.6

Q ss_pred             CCCCCCCCceec-CCCCeeeCCCCCCCCCCCCCC
Q psy15473        155 CPCPNQGPCVQL-DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       155 ~~C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      .-|.+ |+|... ..+...| .|++||+|.+|+.
T Consensus        18 ~yC~n-G~C~~i~~~~~~~C-~C~~gy~G~RCe~   49 (50)
T 2rnl_A           18 NFCIH-GECKYIEHLEAVTC-KCQQEYFGERCGE   49 (50)
T ss_dssp             GTCSS-SEEEEETTTTEEEE-ECCSSCCSSSCCC
T ss_pred             CcCCC-CEEEEecCCCCeeE-ECCCCcccccccc
Confidence            34776 699743 3345899 9999999999985

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=95.16  E-value=0.0074  Score=43.74  Aligned_cols=30  Identities=37%  Similarity=0.922  Sum_probs=25.5

Q ss_pred             CcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        152 CKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       152 C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      |.+ +|.|+|.|...    .+| .|++||.|..|+.
T Consensus       151 C~~-~C~ngG~Cv~P----~~C-~C~~Gw~G~~C~~  180 (188)
T 2ygo_A          151 CPG-GCRNGGFCNER----RIC-ECPDGFHGPHCEG  180 (188)
T ss_dssp             CTT-CCCTTCEECTT----SCE-ECCTTCBTTTTCB
T ss_pred             cCC-CCCCCCEeCCC----Ccc-cCcCCCCCCCCcC
Confidence            543 79999999874    589 8999999999985

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.90  E-value=0.023  Score=50.29  Aligned_cols=48  Identities=27%  Similarity=0.730  Sum_probs=31.7

Q ss_pred             CCCCCccCCCCcc---cCCCCCCCCCCc-CCCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473        129 GGDNCERCARGYY---GNALEGAVTDCK-QCPCPNQGPCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       129 ~G~~C~~C~~G~~---g~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~C~~C~~G~~G  182 (190)
                      .+..| .|++||.   |..|+ ++++|. +.+|.  .+|++.. ++|+| .|++||..
T Consensus       331 ~~y~C-~C~~Gy~l~~g~~C~-dideC~~~~~C~--~~C~n~~-gsy~C-~C~~Gy~l  382 (791)
T 3m0c_C          331 IGYEC-LCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLE-GGYKC-QCEEGFQL  382 (791)
T ss_dssp             BSEEE-ECCTTCEEETTTEEE-CCCCCSSSSSCT--TTCCBCS-SCBCC-CCCSSEEC
T ss_pred             CCccc-CCCCCCccCCCCccc-cCcccCCCCCCC--CeeecCC-CCcee-ecCCCCEe
Confidence            34455 4566663   44443 567786 44564  5888875 67999 99999965

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=94.51  E-value=0.017  Score=49.10  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             CCCCcCCCCCCCCCcee-cCCcccccCCCceeEeec-CCCCCCCCCC
Q psy15473         32 VTDCKQCPCPNQGPCVQ-LDDDQVSNLGNRTRIRIK-SALGGNRTRG   76 (190)
Q Consensus        32 ~~~C~~~~C~~~g~C~~-~~~~~~~~~~~~~~c~c~-~~~~g~~c~~   76 (190)
                      +++|.+.||+|+|+|.+ ..+.        +.|.|. .+|.|.+|+.
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~--------y~C~C~~~G~~G~~Ce~   40 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDR--------YQCDCTRTGYSGPNCTI   40 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTE--------EEEECTTSSEETTTTCE
T ss_pred             CCcCCCCCCCCCCCcCCCCCCc--------eEeeCCCCCcCCCCCCC
Confidence            46899999999999998 5543        689999 9999988864

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=94.19  E-value=0.014  Score=36.23  Aligned_cols=32  Identities=25%  Similarity=0.520  Sum_probs=23.3

Q ss_pred             CCCCCCCCCceec-CCCCeeeCCCCCCCCCCCCCC
Q psy15473        154 QCPCPNQGPCVQL-DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       154 ~~~C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ...|.++ +|... ..+.+.| .|++||+|.+|+.
T Consensus        45 ~~yClnG-~C~~i~~~~~~~C-~C~~GYtG~RCE~   77 (79)
T 1xdt_R           45 KDFCIHG-ECKYVKELRAPSC-ICHPGYHGERCHG   77 (79)
T ss_dssp             TTCCSSE-EECCBGGGTBCCE-EECTTEESTTCCE
T ss_pred             cCcCCCC-EeeeecCCCCeEE-EcCCCcccccccc
Confidence            3467774 89533 2245789 8999999999984

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=94.07  E-value=0.036  Score=31.20  Aligned_cols=25  Identities=24%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             CCCCCCCCceecCCCCeeeCCCCCCCCCC
Q psy15473        155 CPCPNQGPCVQLDDDQVVCSECPRGYGGE  183 (190)
Q Consensus       155 ~~C~~~g~C~~~~~~~~~C~~C~~G~~G~  183 (190)
                      .+|.  .+|++.. ++|+| .|++||.+.
T Consensus        20 ~~C~--~~C~n~~-Gsy~C-~C~~Gy~~~   44 (53)
T 1apq_A           20 PQCQ--HLCHNYV-GGYFC-SCRPGYELQ   44 (53)
T ss_dssp             CTTS--SEEEEET-TEEEE-ECSTTCEEC
T ss_pred             CCCC--CEeECCC-CCeEE-ECCCCCeEC
Confidence            4575  4898876 67999 999999853

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=93.91  E-value=0.069  Score=43.21  Aligned_cols=30  Identities=10%  Similarity=0.101  Sum_probs=19.1

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG   70 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~   70 (190)
                      |+|...++.....|.+..++        +.|.|+++|.
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~--------y~C~C~~G~~   30 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIG--------YECLCPDGFQ   30 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSS--------EEEECCTTEE
T ss_pred             CcccCCCCCCCCEeECCCCC--------eEEECCCCCC
Confidence            46777776666789887654        4565554443

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=93.72  E-value=0.047  Score=44.38  Aligned_cols=41  Identities=34%  Similarity=0.742  Sum_probs=33.1

Q ss_pred             CCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCC-CCCCCCCCC
Q psy15473        145 LEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGEKMSP  187 (190)
Q Consensus       145 c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~-G~~G~~C~~  187 (190)
                      |....+.|.+.||.++|+|.... ..+.| .|+. +|.|+.|+.
T Consensus       181 C~~~~~~C~~~pC~n~g~C~~~~-~~~~C-~C~~~~~~G~~C~~  222 (410)
T 3asi_A          181 CEGPSTTCQEDSCSNQGVCLQQW-DGFSC-DCSMTSFSGPLCND  222 (410)
T ss_dssp             CCCCSSCCCTTSSSTTCEEEECS-SSEEE-ECTTTSEESTTSCE
T ss_pred             CCCCCCCcccccCCCCCEecCCC-CCceE-eccCCcccCCCCCC
Confidence            43334568889999999999875 55999 8996 999999974

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=93.62  E-value=0.023  Score=48.10  Aligned_cols=67  Identities=24%  Similarity=0.665  Sum_probs=46.0

Q ss_pred             CCcCCCCCccCCCCeeeCCCCCC--CCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCC
Q psy15473        107 NCNGHADICDAESGRCICQDNTG--GDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYG  181 (190)
Q Consensus       107 ~C~~~~~~C~~~~g~C~C~~g~~--G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~  181 (190)
                      .|...+ .+..-.|+|.|.+||.  +..|+.|++|||......  ..|.+||-+.    .....+++.| .|..||.
T Consensus       251 ~C~~dG-~w~~p~G~C~C~~G~e~~~~~C~aC~~g~~k~~~~~--~~C~~CP~~S----~s~~~Gs~~C-~C~ng~~  319 (536)
T 3fl7_A          251 HCAVDG-EWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASE--SPCLECPEHT----LPSPEGATSC-ECEEGFF  319 (536)
T ss_dssp             EECTTS-CBCCCBCCCEECTTEEEETTEEEECCTTEECCSCCS--SCCEECCSSE----ECCCTTCSSC-EECTTCB
T ss_pred             EEcCCC-CEecccCcEeccCccccCCceeeecCCCCCcccCCC--CccccCCCCC----CCCCCCccEE-EEecccc
Confidence            355555 4555579999999996  678999999999765432  3477765432    2223466888 8888875

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=93.62  E-value=0.031  Score=39.32  Aligned_cols=34  Identities=29%  Similarity=0.822  Sum_probs=29.1

Q ss_pred             CcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        152 CKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       152 C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      |.+.+|.++|+|.... ..+.| .|.+||.|..||.
T Consensus       122 ~~~~~C~~~g~C~~~~-~~~~c-~C~~g~~g~~C~~  155 (164)
T 3cfw_A          122 CQPWSCSGHGECVEII-NNYTC-NCDVGYYGPQCQF  155 (164)
T ss_dssp             CCTTSSCSSEEEEEET-TEEEE-EECTTCBSSSSCB
T ss_pred             CCCCcCCCCCeecccC-CCcee-eeCCCcccccccc
Confidence            5667898899999875 55999 9999999999985

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=93.61  E-value=0.034  Score=47.49  Aligned_cols=37  Identities=22%  Similarity=0.536  Sum_probs=30.2

Q ss_pred             CCCCcCCCCCCCCCceecC-CcccccCCCceeEeec-CCCCCCCCCC
Q psy15473         32 VTDCKQCPCPNQGPCVQLD-DDQVSNLGNRTRIRIK-SALGGNRTRG   76 (190)
Q Consensus        32 ~~~C~~~~C~~~g~C~~~~-~~~~~~~~~~~~c~c~-~~~~g~~c~~   76 (190)
                      +++|.+.||+|+|+|++.. +.        +.|.|. ++|.|.+|+.
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~--------y~C~C~~~G~~G~~Ce~   39 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQ--------YKCDCTRTGFYGENCTT   39 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTE--------EEEECTTSSEETTTTCE
T ss_pred             CCCCCCCCCCCCCEeeCCCCCC--------eEEecCCCCccCCCCCC
Confidence            3679999999999998532 32        789999 9999988864

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=93.60  E-value=0.028  Score=32.68  Aligned_cols=31  Identities=19%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             CCCCCCCceecC--CcccccCCCceeEeecCCCCCCCCC
Q psy15473         39 PCPNQGPCVQLD--DDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        39 ~C~~~g~C~~~~--~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      ||.|+|+|....  ..      ..+.|.|+++|.|.+|+
T Consensus        15 pC~NGGtC~~~~~~~~------~~~~C~C~~Gf~G~~Ce   47 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADL------PVYSCECAIGFMGQRCE   47 (58)
T ss_dssp             TSCSSCEEEEEEETTE------EEEEEEECTTEESSSSC
T ss_pred             cCCCCCEEeCCccCCC------CCEEeECCCCCccCCCc
Confidence            899999998532  11      12567777776666664

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=93.33  E-value=0.018  Score=40.24  Aligned_cols=35  Identities=29%  Similarity=0.815  Sum_probs=29.3

Q ss_pred             CCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        151 DCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       151 ~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      .|.+.||.++|+|.+.. ..+.| .|.+||.|.+||.
T Consensus       121 ~~~~~pc~~~g~C~~~~-~~~~c-~C~~g~~g~~Ce~  155 (157)
T 1g1t_A          121 ACTNTSCSGHGECVETI-NNYTC-KCDPGFSGLKCEQ  155 (157)
T ss_dssp             CCCTTGGGGSEEEEEET-TEEEE-EECTTEESTTSCE
T ss_pred             CCCCCCCCCCCEeecCC-CCeeE-ECCCCccCccccc
Confidence            46667888889998875 55899 9999999999984

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=92.37  E-value=0.029  Score=45.17  Aligned_cols=49  Identities=20%  Similarity=0.516  Sum_probs=13.2

Q ss_pred             CCCC-CCCccCCCCcc----cCCCCCCCCCCc-CCCCCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473         10 NTGG-DNCERCARGYY----GNALEGAVTDCK-QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG   70 (190)
Q Consensus        10 g~~G-~~C~~C~~g~~----g~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~   70 (190)
                      +..| ..| .|++||.    |..| .++++|. ..+|.+.  |.+..++        +.|.|.++|.
T Consensus        19 ~~~g~~~C-~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~~--C~~~~g~--------~~C~C~~g~~   73 (386)
T 3v65_B           19 MIRGAVQC-TCHTGYRLTEDGRTC-QDVNECAEEGYCSQG--CTNSEGA--------FQCWCEAGYE   73 (386)
T ss_dssp             -----------------------------------CCTTE--EC-------------CCEECCTTEE
T ss_pred             CCCCCcEe-ECCCCceECCCCCcc-CccceeCCcCcccCc--CCCCCCC--------CeEEECCCce
Confidence            3444 678 8999998    8888 5678996 5788864  8877654        5788888876

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=91.69  E-value=0.12  Score=47.95  Aligned_cols=42  Identities=33%  Similarity=0.723  Sum_probs=33.6

Q ss_pred             CCCCCCCCcCCCCCCCCCceecCCCCeeeCCCC-CCCCCCCCCCC
Q psy15473        145 LEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECP-RGYGGEKMSPG  188 (190)
Q Consensus       145 c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~-~G~~G~~C~~c  188 (190)
                      |....+.|.+.||.++|+|...- ..+.| .|+ +||.|+.|+.-
T Consensus      1013 C~~~~~~C~~~pC~ngG~C~~~~-~~~~C-~C~~~g~~G~~C~~~ 1055 (1245)
T 3qcw_A         1013 CEGPSTTCQEDSCSNQGVCLQQW-DGFSC-DCSMTSFSGPLCNDP 1055 (1245)
T ss_dssp             SSCCCCCCCTTSSSSSCEEEEET-TEEEE-ECTTSSCBSTTSCBC
T ss_pred             eecccCceECCcCCCCCEeCCCC-CCCEE-ECCCCCCCCCCccCC
Confidence            43334568889999999999875 44999 899 69999999863

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=91.59  E-value=0.078  Score=32.11  Aligned_cols=26  Identities=19%  Similarity=0.526  Sum_probs=16.6

Q ss_pred             CCCCCcC--CCCCCCCCceecCCCCeeeCC
Q psy15473        148 AVTDCKQ--CPCPNQGPCVQLDDDQVVCSE  175 (190)
Q Consensus       148 ~~~~C~~--~~C~~~g~C~~~~~~~~~C~~  175 (190)
                      ++++|..  .+|.++++|++.. ++|+| .
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~-Gsy~C-~   29 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHY-GGYLC-L   29 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETT-CCEEE-E
T ss_pred             ccccccCCCCCCCCCCEeECCC-CCeEe-c
Confidence            3456653  4576667787765 56788 5

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=91.14  E-value=0.079  Score=37.08  Aligned_cols=34  Identities=18%  Similarity=0.453  Sum_probs=21.3

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      ++|.+.||.++++|.+....        +.|.|+++|.|..|
T Consensus       120 ~~c~~~~C~~~g~C~~~~~~--------~~c~C~~g~~G~~C  153 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLETIGN--------YTCSCYPGFYGPEC  153 (162)
T ss_dssp             CCCCTTGGGGSEEEEECSSS--------EEEEECTTEESTTS
T ss_pred             CCCcCCCCCCCCEEecCCCC--------ceEeCCCCCcCccc
Confidence            35777888888888876543        45555544444333

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=90.86  E-value=0.14  Score=34.40  Aligned_cols=13  Identities=46%  Similarity=1.078  Sum_probs=10.6

Q ss_pred             CCCCCCCCceecC
Q psy15473         38 CPCPNQGPCVQLD   50 (190)
Q Consensus        38 ~~C~~~g~C~~~~   50 (190)
                      +||+|+|+|++..
T Consensus         1 ~pC~nggtC~~~~   13 (122)
T 2fd6_A            1 CDCLNGGTCVSNK   13 (122)
T ss_dssp             CCCCSSCEEEECT
T ss_pred             CCCCCcCCcCCCc
Confidence            4899999998753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=89.64  E-value=0.46  Score=41.36  Aligned_cols=50  Identities=20%  Similarity=0.493  Sum_probs=36.2

Q ss_pred             CCCCCCCccCCCCcc---cCCCCCCCCCCc-CCCCCCCCCceecCCcccccCCCceeEeecCCCCC
Q psy15473         10 NTGGDNCERCARGYY---GNALEGAVTDCK-QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG   71 (190)
Q Consensus        10 g~~G~~C~~C~~g~~---g~~c~~~~~~C~-~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g   71 (190)
                      ...|..| .|++||.   |..|+ ++++|. +.+|.  ..|++..++        +.|.|.++|.+
T Consensus       311 ~~~~~~C-~C~~G~~~~~~~~C~-dideC~~~~~C~--~~C~n~~g~--------y~C~C~~G~~~  364 (699)
T 1n7d_A          311 LKIGYEC-LCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGG--------YKCQCEEGFQL  364 (699)
T ss_dssp             CTTCCCC-CCCSSSCCCSSSCCC-CCCCCSSSSSCT--TTCCBCSSC--------BCCCCCSSCBC
T ss_pred             CCCCcEE-eCCCCeEcCCCCccc-CccccCCCCccc--cccccCCCC--------eeeeeeccccc
Confidence            3345556 7999998   66776 678997 56786  368887665        57888888875

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=88.45  E-value=0.14  Score=43.22  Aligned_cols=38  Identities=26%  Similarity=0.816  Sum_probs=28.5

Q ss_pred             CceeecCCCCC--CCCCccCCCCcccCCCCCCCCCCcCCCCC
Q psy15473          2 FRRCICQDNTG--GDNCERCARGYYGNALEGAVTDCKQCPCP   41 (190)
Q Consensus         2 ~~~C~C~~g~~--G~~C~~C~~g~~g~~c~~~~~~C~~~~C~   41 (190)
                      .|+|.|..||.  |..|+.|++|||......  ..|++||-+
T Consensus       262 ~G~C~C~~G~e~~~~~C~aC~~g~~k~~~~~--~~C~~CP~~  301 (536)
T 3fl7_A          262 IGQCLCQAGYEKVEDACQACSPGFFKFEASE--SPCLECPEH  301 (536)
T ss_dssp             BCCCEECTTEEEETTEEEECCTTEECCSCCS--SCCEECCSS
T ss_pred             cCcEeccCccccCCceeeecCCCCCcccCCC--CccccCCCC
Confidence            58999999997  677999999999664322  357765544

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=88.16  E-value=0.35  Score=32.45  Aligned_cols=15  Identities=7%  Similarity=-0.110  Sum_probs=9.2

Q ss_pred             eeeCCCCCCCCCCCCC
Q psy15473        171 VVCSECPRGYGGEKMS  186 (190)
Q Consensus       171 ~~C~~C~~G~~G~~C~  186 (190)
                      |++ .+..++.|..|+
T Consensus        48 YrG-~~~~t~sG~~Cq   62 (122)
T 2fd6_A           48 YRG-KASTDTMGRPCL   62 (122)
T ss_dssp             CCS-CCCBBTTSCBBC
T ss_pred             cee-eccccccCCccc
Confidence            566 566666666664

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=87.04  E-value=0.52  Score=38.12  Aligned_cols=42  Identities=29%  Similarity=0.484  Sum_probs=32.5

Q ss_pred             CCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecC-CCCCCCCCC
Q psy15473         27 ALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKS-ALGGNRTRG   76 (190)
Q Consensus        27 ~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~-~~~g~~c~~   76 (190)
                      .|....+.|.+.||.++++|......        +.|.|+. +|.|..|+.
T Consensus       180 gC~~~~~~C~~~pC~n~g~C~~~~~~--------~~C~C~~~~~~G~~C~~  222 (410)
T 3asi_A          180 GCEGPSTTCQEDSCSNQGVCLQQWDG--------FSCDCSMTSFSGPLCND  222 (410)
T ss_dssp             SCCCCSSCCCTTSSSTTCEEEECSSS--------EEEECTTTSEESTTSCE
T ss_pred             CCCCCCCCcccccCCCCCEecCCCCC--------ceEeccCCcccCCCCCC
Confidence            45444568999999999999876433        6899985 898888863

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=86.49  E-value=0.35  Score=44.99  Aligned_cols=36  Identities=33%  Similarity=0.765  Sum_probs=31.2

Q ss_pred             CCCcCCCCCCCCCceecCCCCeeeCCCC-CCCCCCCCCC
Q psy15473        150 TDCKQCPCPNQGPCVQLDDDQVVCSECP-RGYGGEKMSP  187 (190)
Q Consensus       150 ~~C~~~~C~~~g~C~~~~~~~~~C~~C~-~G~~G~~C~~  187 (190)
                      +.|.+.||.++|+|.+.. ..+.| .|+ +||.|..|+.
T Consensus       620 ~~C~~~pC~ngg~C~~~~-~~~~C-~C~~~g~~G~~C~~  656 (1245)
T 3qcw_A          620 KPCLSNPCKNNGMCRDGW-NRYVC-DCSGTGYLGRSCER  656 (1245)
T ss_dssp             CGGGSCCCCTTCEEEECS-SSEEE-ECTTTTEESTTSCE
T ss_pred             CCCCccCCCCCCEEeCCC-CCeEE-ECCCCCcccccCcc
Confidence            558889999999999865 55999 899 7999999975

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=85.95  E-value=0.32  Score=27.22  Aligned_cols=18  Identities=33%  Similarity=0.698  Sum_probs=11.1

Q ss_pred             CCCCCccCCCCcccCCCCC
Q psy15473         12 GGDNCERCARGYYGNALEG   30 (190)
Q Consensus        12 ~G~~C~~C~~g~~g~~c~~   30 (190)
                      ..+.| +|++||+|.+|+.
T Consensus        28 ~~~~C-~C~~gy~G~RCe~   45 (50)
T 3e50_C           28 DKPAC-VCHSGYVGARCEH   45 (50)
T ss_pred             CCeEE-ECCCCCcccCCCc
Confidence            34555 6777777776653

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=85.58  E-value=0.51  Score=34.12  Aligned_cols=31  Identities=29%  Similarity=0.792  Sum_probs=21.7

Q ss_pred             CcccCCCcCCCCCccCCCCeeeCCCCCCCCCCcc
Q psy15473        102 RCVPCNCNGHADICDAESGRCICQDNTGGDNCER  135 (190)
Q Consensus       102 ~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~  135 (190)
                      .|. ..|.+++ .|.. .++|.|++||+|..|+.
T Consensus       150 ~C~-~~C~ngG-~Cv~-P~~C~C~~Gw~G~~C~~  180 (188)
T 2ygo_A          150 ECP-GGCRNGG-FCNE-RRICECPDGFHGPHCEG  180 (188)
T ss_dssp             CCT-TCCCTTC-EECT-TSCEECCTTCBTTTTCB
T ss_pred             ccC-CCCCCCC-EeCC-CCcccCcCCCCCCCCcC
Confidence            454 3577544 7864 67899999998888863

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=84.86  E-value=0.44  Score=26.63  Aligned_cols=13  Identities=38%  Similarity=0.989  Sum_probs=6.6

Q ss_pred             eecCCCCCCCCCc
Q psy15473          5 CICQDNTGGDNCE   17 (190)
Q Consensus         5 C~C~~g~~G~~C~   17 (190)
                      |+|..+|+|.+||
T Consensus        36 C~C~~gy~G~RCe   48 (50)
T 2rnl_A           36 CKCQQEYFGERCG   48 (50)
T ss_dssp             EECCSSCCSSSCC
T ss_pred             EECCCCccccccc
Confidence            5555555555543

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=82.12  E-value=0.92  Score=31.36  Aligned_cols=34  Identities=26%  Similarity=0.545  Sum_probs=21.4

Q ss_pred             CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         37 QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        37 ~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      .+||+|+|+|+....     ......|.|+++|.|.+|+
T Consensus        12 ~cpC~NGGtC~~~~~-----~s~~~~C~Cp~g~~G~~Ce   45 (145)
T 2i9a_A           12 NCDCLNGGTCVSNKY-----FSNIHWCNCPKKFGGQHCE   45 (145)
T ss_dssp             CCCCCTTCEEEECSS-----STTCEEEECCTTEESTTSC
T ss_pred             CCCCCCCCCcCCCcc-----ccCCccccCCCCCCCCcee
Confidence            459999999976421     1111367777777766664

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=82.01  E-value=0.2  Score=35.42  Aligned_cols=45  Identities=22%  Similarity=0.548  Sum_probs=28.4

Q ss_pred             CCcccCCCCCCCCCCcCCC-----CCCCCCceecCCCCeeeCCCCCCCC----CCCCC
Q psy15473        138 RGYYGNALEGAVTDCKQCP-----CPNQGPCVQLDDDQVVCSECPRGYG----GEKMS  186 (190)
Q Consensus       138 ~G~~g~~c~~~~~~C~~~~-----C~~~g~C~~~~~~~~~C~~C~~G~~----G~~C~  186 (190)
                      .||.+.....++++|...+     |.+  .|.+.. +.++| .|++||.    |..|+
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~-g~~~C-~C~~Gy~l~~d~~~C~  166 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHL-GGFYC-SCRAGYVLHRNKRTCS  166 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSSS--EEEEET-TEEEE-ECCTTEEECTTSSCEE
T ss_pred             cCceeeeeccccCcccCCCCCCCccCC--ccccCC-CCEEE-eCCCCcEECCCCCccc
Confidence            4555443333456676433     654  688765 66999 9999998    55553

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=81.50  E-value=0.43  Score=32.89  Aligned_cols=33  Identities=18%  Similarity=0.560  Sum_probs=20.0

Q ss_pred             CCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         34 DCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        34 ~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      .|.+.||.+++.|.+....        +.|.|..+|.|.+|
T Consensus       121 ~~~~~pc~~~g~C~~~~~~--------~~c~C~~g~~g~~C  153 (157)
T 1g1t_A          121 ACTNTSCSGHGECVETINN--------YTCKCDPGFSGLKC  153 (157)
T ss_dssp             CCCTTGGGGSEEEEEETTE--------EEEEECTTEESTTS
T ss_pred             CCCCCCCCCCCEeecCCCC--------eeEECCCCccCccc
Confidence            4666777777778765432        45655555555444

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=80.59  E-value=0.43  Score=36.84  Aligned_cols=58  Identities=26%  Similarity=0.562  Sum_probs=32.6

Q ss_pred             CeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcC----CCCCCCCCceecCCCCeeeCCCCCCC------CCCCCC
Q psy15473        120 GRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ----CPCPNQGPCVQLDDDQVVCSECPRGY------GGEKMS  186 (190)
Q Consensus       120 g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~----~~C~~~g~C~~~~~~~~~C~~C~~G~------~G~~C~  186 (190)
                      |.|.|.++|.|..| .|...-....  .....|..    -.|..+|+|+-     ++| .|.+.+      .|..|+
T Consensus       207 G~C~C~~g~~G~~C-eC~~~~~~~~--~~~~~C~~~~~~~~CSgrG~C~C-----G~C-~C~~~~~~~~~~~G~~~~  274 (280)
T 2p26_A          207 GICRCDTGYIGKNC-ECQTQGRSSQ--ELEGSCRKDNNSIICSGLGDCVC-----GQC-LCHTSDVPGKLIYGQYCE  274 (280)
T ss_dssp             TEEEECTTEESTTS-CEECTTSCHH--HHHHTTCSSTTSCGGGGSEEEET-----TEE-EECCCSSTTCEEESTTSC
T ss_pred             CceeCCCCCcCCcc-eecCCccccc--cccccCCCCCCCCccCCCceEeC-----Cee-ECcCCCCCCeeEeeEecc
Confidence            57778888888888 4543211000  00002432    13777788875     577 786664      666665

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=80.33  E-value=0.69  Score=28.52  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=18.1

Q ss_pred             CCCc---CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         33 TDCK---QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        33 ~~C~---~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      ++|.   ...|.|+ +|..+.+.      ....|.|.++|.|.+|
T Consensus        38 ~pC~~~~~~yClnG-~C~~i~~~------~~~~C~C~~GYtG~RC   75 (79)
T 1xdt_R           38 DPCLRKYKDFCIHG-ECKYVKEL------RAPSCICHPGYHGERC   75 (79)
T ss_dssp             -CTTTTTTTCCSSE-EECCBGGG------TBCCEEECTTEESTTC
T ss_pred             CCCCccccCcCCCC-EeeeecCC------CCeEEEcCCCcccccc
Confidence            3565   5678875 78544321      1134665555555444

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=80.13  E-value=1.5  Score=30.42  Aligned_cols=33  Identities=18%  Similarity=0.516  Sum_probs=21.3

Q ss_pred             CCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         34 DCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        34 ~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      .|.+.+|.++++|......        +.|.|.++|.|..|
T Consensus       121 ~~~~~~C~~~g~C~~~~~~--------~~c~C~~g~~g~~C  153 (164)
T 3cfw_A          121 SCQPWSCSGHGECVEIINN--------YTCNCDVGYYGPQC  153 (164)
T ss_dssp             CCCTTSSCSSEEEEEETTE--------EEEEECTTCBSSSS
T ss_pred             CCCCCcCCCCCeecccCCC--------ceeeeCCCcccccc
Confidence            4666778888888876543        46666655555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1kloa2	56	g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (M	3e-06
d1kloa3	51	g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (	2e-05
d1kloa1	55	g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mu	0.001

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 56

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (95), Expect = 3e-06
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 106 CNCNGHADI-----CDAESGRCI-CQDNTGGDNCERCARGYYGNALEGAVTDCKQC 155
           C CN + D      C+  +G C+ C  NT G  C+RC  G++GN L        +C
Sbjct: 1   CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAP--NPADKC 54

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 103 CVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYG 142
           C P         C+  +G+C C  +  G +C  C  GYY 
Sbjct: 3   CNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYN 42

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 55

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.001
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 106 CNCNGHADICDAESGR----CICQDNTGGDNCERCARGYYGNALEGAVTDCKQC 155
           C C G +        +      C   T G  CE C  GY+G+ L G+    + C
Sbjct: 1   CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPL-GSNGPVRLC 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.85
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.84
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.82
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.75
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.73
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.65
d1kloa2	56	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	98.59
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.55
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.53
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.5
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.48
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.43
d1kloa3	51	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	98.39
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.38
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.38
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.33
d1kloa2	56	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	98.31
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.3
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.24
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.22
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.03
d1kloa3	51	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	98.0
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.97
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	97.93
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.91
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	97.89
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	97.83
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	97.79
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.77
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.74
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.73
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	97.63
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.56
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	97.36
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	97.25
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.1
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	96.93
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	96.76
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	96.75
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	96.73
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.57
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	95.37
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	95.23
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	94.41
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	94.28
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	94.27
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	94.01
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	93.69
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	93.52
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	93.4
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	92.83
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	92.79
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	91.87
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	91.84
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	91.82
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	91.69
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	89.2
d1szba2	45	Mannose-binding protein associated serine protease	89.13
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	88.5
d1nt0a3	45	Mannose-binding protein associated serine protease	87.96
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	87.7
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	82.71

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=8.1e-10  Score=58.65  Aligned_cols=37  Identities=30%  Similarity=0.735  Sum_probs=33.1

Q ss_pred             CCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       149 ~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      +++|.+.||.++|+|++.. +.|+| .|++||+|++||.
T Consensus         1 Id~C~~~PC~n~g~C~~~~-~~y~C-~C~~G~~G~~Ce~   37 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQI-GEFQC-ICMPGYEGVHCEV   37 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECS-SCEEE-ECCTTEESSSSCE
T ss_pred             CcCCcCCCCCCCCEEECCC-CCEEE-eCCCCCccCcCee
Confidence            4679999999999999876 56999 9999999999985

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.3e-09  Score=57.95  Aligned_cols=38  Identities=29%  Similarity=0.675  Sum_probs=33.7

Q ss_pred             CCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        148 AVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       148 ~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ++++|.+.||.++|+|++.. +.|+| .|++||+|++||.
T Consensus         2 d~d~C~~~PC~ngg~C~~~~-~~y~C-~C~~g~~G~~Cei   39 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDI-NSYEC-WCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEET-TEEEE-ECCTTCCSTTSCC
T ss_pred             ccccCCCCCCCCCcEEEcCC-CCEEE-ECCCCCCCCCCCC
Confidence            45789999999999999876 56999 9999999999984

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.82  E-value=7.8e-10  Score=58.06  Aligned_cols=37  Identities=24%  Similarity=0.662  Sum_probs=32.9

Q ss_pred             CCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCC
Q psy15473        148 AVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMS  186 (190)
Q Consensus       148 ~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~  186 (190)
                      ++++|.+.||+++|+|++.. +.|+| .|++||+|++||
T Consensus         1 D~d~C~~~PC~ngg~C~~~~-~~y~C-~C~~g~~G~~Ce   37 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQL-QSYIC-FCLPAFEGRNCE   37 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEET-TEEEE-ECCTTEESTTSC
T ss_pred             CcccCCCCCCCCCCEEECCC-CCeEE-ECCCCCcCCCCC
Confidence            35779999999999999876 55999 999999999997

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.6e-09  Score=55.33  Aligned_cols=35  Identities=31%  Similarity=0.934  Sum_probs=31.2

Q ss_pred             CCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCC
Q psy15473        150 TDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMS  186 (190)
Q Consensus       150 ~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~  186 (190)
                      ++|.+.||.++|+|++.. +.++| .|++||+|.+||
T Consensus         1 d~C~~~PC~ngg~C~~~~-~~y~C-~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKI-NEFQC-ECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECS-SCEEE-ECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCC-CCeEE-ECCCCCCCCCcC
Confidence            458899999999999876 45999 999999999997

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.5e-09  Score=56.70  Aligned_cols=37  Identities=30%  Similarity=0.724  Sum_probs=32.5

Q ss_pred             CCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCCC
Q psy15473        150 TDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSPG  188 (190)
Q Consensus       150 ~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~c  188 (190)
                      ++|.+.||+++|+|++.. +.|+| .|++||+|.+||.-
T Consensus         1 D~C~~~PC~ngg~C~~~~-~~y~C-~C~~G~~G~~Cei~   37 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGL-GEYTC-TCLEGFEGKNCELF   37 (39)
T ss_dssp             CTTTTCCCCSSCEECCCS-SSCCE-ECCTTEETTTTCEE
T ss_pred             CcCCCCCCCCCcEEECCC-CCEEE-ECCCCCCcCcCeEc
Confidence            468899999999999876 55999 99999999999864

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=9.6e-09  Score=55.47  Aligned_cols=38  Identities=29%  Similarity=0.809  Sum_probs=32.6

Q ss_pred             CCCCCc--CCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        148 AVTDCK--QCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       148 ~~~~C~--~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ++++|.  +.||.++|+|++.. +.|+| .|++||+|++|+.
T Consensus         2 DideC~~~~~pC~n~g~C~n~~-g~y~C-~C~~G~~G~~Ce~   41 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTL-GSFEC-QCLQGYTGPRCEI   41 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECS-SSEEE-ECCTTEESTTSCE
T ss_pred             CCccccCCCCCCCCCcEeECCC-CCEEe-ECCCCCcCCCCcC
Confidence            456776  67899999999976 66999 9999999999974

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=8e-09  Score=59.42  Aligned_cols=32  Identities=41%  Similarity=1.068  Sum_probs=29.3

Q ss_pred             CCccCCCCeee-CCCCCCCCCCccCCCCcccCC
Q psy15473        113 DICDAESGRCI-CQDNTGGDNCERCARGYYGNA  144 (190)
Q Consensus       113 ~~C~~~~g~C~-C~~g~~G~~C~~C~~G~~g~~  144 (190)
                      ..|++++|+|+ |+++++|.+|++|++||||++
T Consensus        13 ~~Cd~~tG~C~~C~~nt~G~~Cd~C~~G~yg~~   45 (56)
T d1kloa2          13 GNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNP   45 (56)
T ss_dssp             CCBCTTTCCBCCBCTTEETTTTCEECTTEEECT
T ss_pred             CccCCCCCCCCCCCCCCCCCCcCcccCCcccCC
Confidence            37999999995 999999999999999999965

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.1e-09  Score=55.90  Aligned_cols=36  Identities=28%  Similarity=0.798  Sum_probs=32.1

Q ss_pred             CCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        150 TDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       150 ~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      +.|.+.||.++|+|++.. +.++| .|++||.|++||+
T Consensus         2 ~~C~~~pC~ngg~C~~~~-~~~~C-~C~~g~~G~~Ce~   37 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETI-NNYTC-KCDPGFSGLKCEQ   37 (39)
T ss_dssp             CCCCTTGGGGSEEEEEET-TEEEE-EECTTEESTTSCE
T ss_pred             CcccCCcCCCCcEEECCC-CCEEE-eCCCCCcCcCcCc
Confidence            458899999999999876 56999 9999999999985

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=6.6e-09  Score=55.40  Aligned_cols=37  Identities=24%  Similarity=0.655  Sum_probs=32.6

Q ss_pred             CCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCCC
Q psy15473        150 TDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSPG  188 (190)
Q Consensus       150 ~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~c  188 (190)
                      ++|.+.||.++|+|++.. +.++| .|++||.|++||.-
T Consensus         2 ~~C~~~pC~ngg~C~~~~-~~y~C-~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETI-GNYTC-SCYPGFYGPECEYV   38 (40)
T ss_dssp             CCCCTTGGGGSEEEEECS-SSEEE-EECTTEESTTSCEE
T ss_pred             CcccCCcCCCCcEEECCC-CCeEE-eCCCCccCCCCCCC
Confidence            468899999999999876 56999 99999999999863

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.50  E-value=2.3e-08  Score=53.77  Aligned_cols=38  Identities=39%  Similarity=0.919  Sum_probs=32.3

Q ss_pred             CCCCcCCCCCCCCCceecCCCCeeeCCCCC-CCCCCCCCC
Q psy15473        149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGEKMSP  187 (190)
Q Consensus       149 ~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~-G~~G~~C~~  187 (190)
                      ++.|.+.||+|+|+|++...+.|+| .|++ ||+|.+||.
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C-~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQC-DCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEE-ECTTSSEETTTTCE
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEE-ECCCCCcCCcCcCc
Confidence            4678999999999998764456999 9986 999999985

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.9e-08  Score=51.88  Aligned_cols=36  Identities=33%  Similarity=0.778  Sum_probs=30.3

Q ss_pred             CcCCCCCCCCCceecC-CCCeeeCCCCCCCCCCCCCCC
Q psy15473        152 CKQCPCPNQGPCVQLD-DDQVVCSECPRGYGGEKMSPG  188 (190)
Q Consensus       152 C~~~~C~~~g~C~~~~-~~~~~C~~C~~G~~G~~C~~c  188 (190)
                      |.+.||+|+|+|+... ...++| .|++||.|.+||.-
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C-~C~~g~~G~~Ce~~   37 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVC-QCPEGFAGKSCEID   37 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEE-ECCTTCBSSSCCBC
T ss_pred             CcCCCCCCCCEEecCCCCCCeEE-CCCCCCCCCCcCcC
Confidence            5688999999998753 346899 99999999999864

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=5.4e-08  Score=52.02  Aligned_cols=37  Identities=35%  Similarity=0.850  Sum_probs=31.1

Q ss_pred             CCCcCCCCCCCCCceecCCCCeeeCCCC-CCCCCCCCCC
Q psy15473        150 TDCKQCPCPNQGPCVQLDDDQVVCSECP-RGYGGEKMSP  187 (190)
Q Consensus       150 ~~C~~~~C~~~g~C~~~~~~~~~C~~C~-~G~~G~~C~~  187 (190)
                      +.|.+.||+|+|+|++...+.|+| .|+ +||+|.+|+.
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C-~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGENCTT   39 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEE-ECTTSSEETTTTCE
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEE-eCcCCCcCCcCcCc
Confidence            568899999999998753356999 997 6999999985

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=5.6e-08  Score=54.64  Aligned_cols=31  Identities=32%  Similarity=0.956  Sum_probs=29.1

Q ss_pred             CccCCCCeeeCCCCCCCCCCccCCCCcccCC
Q psy15473        114 ICDAESGRCICQDNTGGDNCERCARGYYGNA  144 (190)
Q Consensus       114 ~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~  144 (190)
                      .|++++|+|.|+++++|.+|++|.+|||+..
T Consensus        14 ~Cd~~tGqC~Ck~~v~G~~Cd~C~~g~~~~~   44 (51)
T d1kloa3          14 SCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQ   44 (51)
T ss_dssp             CCCTTTCCCCBCTTEESTTCCEECTTCBCGG
T ss_pred             ccCCCCCeecCCCCCcCCCcccccccccCCC
Confidence            6889999999999999999999999999864

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.8e-07  Score=49.32  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=29.0

Q ss_pred             CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         31 AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        31 ~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      +.|+|.+.||+|+|+|++....        +.|.|+++|.|.+|
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~~--------y~C~C~~g~~G~~C   37 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDINS--------YECWCPFGFEGKNC   37 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTE--------EEEECCTTCCSTTS
T ss_pred             ccccCCCCCCCCCcEEEcCCCC--------EEEECCCCCCCCCC
Confidence            4679999999999999987654        67887777777665

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.3e-07  Score=49.84  Aligned_cols=35  Identities=20%  Similarity=0.463  Sum_probs=27.3

Q ss_pred             CCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         32 VTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        32 ~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      +|+|.+.||+|+|+|++....        +.|.|+++|.|.+|
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~--------y~C~C~~G~~G~~C   35 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGE--------FQCICMPGYEGVHC   35 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSC--------EEEECCTTEESSSS
T ss_pred             CcCCcCCCCCCCCEEECCCCC--------EEEeCCCCCccCcC
Confidence            478999999999999987654        57777666666555

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.33  E-value=1.2e-07  Score=49.46  Aligned_cols=36  Identities=22%  Similarity=0.398  Sum_probs=28.4

Q ss_pred             CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         31 AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        31 ~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      ++|+|.+.||+|+++|++....        +.|.|+++|.|.+|
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~--------y~C~C~~g~~G~~C   36 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQS--------YICFCLPAFEGRNC   36 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTE--------EEEECCTTEESTTS
T ss_pred             CcccCCCCCCCCCCEEECCCCC--------eEEECCCCCcCCCC
Confidence            3678999999999999987654        67877777776555

>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=6.6e-08  Score=55.45  Aligned_cols=27  Identities=41%  Similarity=1.067  Sum_probs=24.6

Q ss_pred             CCceee-cCCCCCCCCCccCCCCcccCC
Q psy15473          1 MFRRCI-CQDNTGGDNCERCARGYYGNA   27 (190)
Q Consensus         1 ~~~~C~-C~~g~~G~~C~~C~~g~~g~~   27 (190)
                      ++|+|+ |+++++|++|++|++||||+.
T Consensus        18 ~tG~C~~C~~nt~G~~Cd~C~~G~yg~~   45 (56)
T d1kloa2          18 LTGECLKCIYNTAGFYCDRCKEGFFGNP   45 (56)
T ss_dssp             TTCCBCCBCTTEETTTTCEECTTEEECT
T ss_pred             CCCCCCCCCCCCCCCCcCcccCCcccCC
Confidence            468995 999999999999999999975

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.3e-07  Score=47.72  Aligned_cols=34  Identities=18%  Similarity=0.556  Sum_probs=26.8

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      |+|.+.||+|+|+|++....        +.|.|+++|.|.+|
T Consensus         1 d~C~~~PC~ngg~C~~~~~~--------y~C~C~~g~~G~~C   34 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINE--------FQCECPTGFTGHLC   34 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSC--------EEEECCTTEESSSS
T ss_pred             CCCCCCCCCCCcEEECCCCC--------eEEECCCCCCCCCc
Confidence            57999999999999987654        57877777766555

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.3e-07  Score=52.17  Aligned_cols=37  Identities=22%  Similarity=0.578  Sum_probs=31.6

Q ss_pred             CCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCCC
Q psy15473        149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSPG  188 (190)
Q Consensus       149 ~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~c  188 (190)
                      .+.|.+.||.+ |+|.+.. +.|+| .|++||.|.+|++-
T Consensus         8 ~~~C~~~PC~n-G~C~~~~-~~y~C-~C~~G~~G~~Ce~~   44 (48)
T d1autl1           8 EHPCASLCCGH-GTCIDGI-GSFSC-DCRSGWEGRFCQRE   44 (48)
T ss_dssp             CCSSSSTTTTS-EEECCCS-SCCCE-EECTTEESTTSCEE
T ss_pred             CCcccCCCCCC-CEEECCC-CCCeE-eCCCCCcCCCcccc
Confidence            36799999987 8999876 55999 99999999999863

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3e-07  Score=48.43  Aligned_cols=34  Identities=24%  Similarity=0.518  Sum_probs=24.9

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      |+|.+.||+|+|+|++..+.        +.|.|+++|.|.+|
T Consensus         1 D~C~~~PC~ngg~C~~~~~~--------y~C~C~~G~~G~~C   34 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGE--------YTCTCLEGFEGKNC   34 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSS--------CCEECCTTEETTTT
T ss_pred             CcCCCCCCCCCcEEECCCCC--------EEEECCCCCCcCcC
Confidence            57999999999999987654        45666555555544

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2e-06  Score=45.98  Aligned_cols=36  Identities=22%  Similarity=0.524  Sum_probs=27.3

Q ss_pred             CCCCCc--CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         31 AVTDCK--QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        31 ~~~~C~--~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      ++|+|.  +.||+++++|++..++        +.|.|+++|.|.+|
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~--------y~C~C~~G~~G~~C   39 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGS--------FECQCLQGYTGPRC   39 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSS--------EEEECCTTEESTTS
T ss_pred             CCccccCCCCCCCCCcEeECCCCC--------EEeECCCCCcCCCC
Confidence            467787  6899999999998765        57777666666554

>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=7.6e-07  Score=49.81  Aligned_cols=27  Identities=30%  Similarity=0.851  Sum_probs=24.8

Q ss_pred             CCceeecCCCCCCCCCccCCCCcccCC
Q psy15473          1 MFRRCICQDNTGGDNCERCARGYYGNA   27 (190)
Q Consensus         1 ~~~~C~C~~g~~G~~C~~C~~g~~g~~   27 (190)
                      ++|+|.|+++++|++|++|++|||+..
T Consensus        18 ~tGqC~Ck~~v~G~~Cd~C~~g~~~~~   44 (51)
T d1kloa3          18 VTGQCQCLPHVSGRDCGTCDPGYYNLQ   44 (51)
T ss_dssp             TTCCCCBCTTEESTTCCEECTTCBCGG
T ss_pred             CCCeecCCCCCcCCCcccccccccCCC
Confidence            478999999999999999999999864

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.6e-07  Score=46.71  Aligned_cols=35  Identities=17%  Similarity=0.444  Sum_probs=27.5

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      +.|.+.||+|+|+|++..+.        +.|.|+++|.|.+|+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~--------y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGN--------YTCSCYPGFYGPECE   36 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSS--------EEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCC--------eEEeCCCCccCCCCC
Confidence            46899999999999987654        678877777776664

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=9.8e-07  Score=46.40  Aligned_cols=35  Identities=17%  Similarity=0.538  Sum_probs=27.0

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      +.|.+.||+|+|+|++..+.        +.|.|+++|.|.+|+
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~--------~~C~C~~g~~G~~Ce   36 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINN--------YTCKCDPGFSGLKCE   36 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTE--------EEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCC--------EEEeCCCCCcCcCcC
Confidence            36999999999999987654        577777777666654

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=5.4e-06  Score=46.52  Aligned_cols=35  Identities=29%  Similarity=0.704  Sum_probs=28.9

Q ss_pred             CcCCCCCCCCCceec-CCCCeeeCCCCCCCCCCCCCC
Q psy15473        152 CKQCPCPNQGPCVQL-DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       152 C~~~~C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      |.+.+|.|+|+|... ....++| .|++||+|.+||.
T Consensus         9 c~~~~C~NgG~C~~~~~~~~~~C-~C~~gy~G~~Ce~   44 (53)
T d3egfa_           9 SYDGYCLNGGVCMHIESLDSYTC-NCVIGYSGDRCQT   44 (53)
T ss_dssp             TSSCCSCSSCEEEEESSSSCEEE-ECCTTCCSSSSCC
T ss_pred             CCCCCCCCCcEeeccCCCCCeEe-ECCCCCcCCCCcc
Confidence            567789999999753 2246999 9999999999985

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=97.89  E-value=3.2e-06  Score=45.10  Aligned_cols=36  Identities=31%  Similarity=0.591  Sum_probs=26.1

Q ss_pred             CCCCcCCCCCCCCCceecCCcccccCCCceeEeecC-CCCCCCC
Q psy15473         32 VTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKS-ALGGNRT   74 (190)
Q Consensus        32 ~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~-~~~g~~c   74 (190)
                      +|+|.+.||+|+|+|++....       .+.|.|.. +|.|.+|
T Consensus         2 id~C~~nPC~ngG~C~~~~~~-------~y~C~C~~~G~~G~~C   38 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLD-------RYQCDCTRTGYSGPNC   38 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTT-------EEEEECTTSSEETTTT
T ss_pred             CccCcCCCCCCCCEeeeCCCC-------CEEEECCCCCcCCcCc
Confidence            578999999999999875322       26787764 5666555

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=9.3e-06  Score=43.00  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=24.6

Q ss_pred             CcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         35 CKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        35 C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      |.+.||+|+|+|+.....      ..+.|.|+++|.|.+|+
T Consensus         1 C~~nPC~ngG~C~~~~~~------~~y~C~C~~g~~G~~Ce   35 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYF------SDFVCQCPEGFAGKSCE   35 (41)
T ss_dssp             CSSCCSCTTCEEEEESSS------SCEEEECCTTCBSSSCC
T ss_pred             CcCCCCCCCCEEecCCCC------CCeEECCCCCCCCCCcC
Confidence            678999999999976432      12567776666666653

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=2.2e-06  Score=48.63  Aligned_cols=27  Identities=41%  Similarity=1.024  Sum_probs=23.8

Q ss_pred             cee-ecCCCCCCCCCccCCCCcccCCCC
Q psy15473          3 RRC-ICQDNTGGDNCERCARGYYGNALE   29 (190)
Q Consensus         3 ~~C-~C~~g~~G~~C~~C~~g~~g~~c~   29 (190)
                      ..| .|++||+|++||+|++||||+.+.
T Consensus        18 ~vC~~C~~~~~G~~Ce~C~~g~yg~P~~   45 (55)
T d1kloa1          18 VVCTHCPTGTAGKRCELCDDGYFGDPLG   45 (55)
T ss_dssp             EEECSCCTTEESTTSCEECTTEEEETTC
T ss_pred             EEcCCCCCCCccCcccccCCccccCccc
Confidence            457 599999999999999999998754

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2e-06  Score=50.29  Aligned_cols=37  Identities=22%  Similarity=0.696  Sum_probs=29.7

Q ss_pred             CCCcCCCCCCCCCceec----CCCCeeeCCCCCCCCCCCCCC
Q psy15473        150 TDCKQCPCPNQGPCVQL----DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       150 ~~C~~~~C~~~g~C~~~----~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ++|.+.+|.|+|+|...    ..+.++| .|++||+|.+|+.
T Consensus         7 ~ec~~~~C~NgG~C~~~~~~~~~~~y~C-~C~~gy~G~~Ce~   47 (63)
T d1haea_           7 AEKEKTFCVNGGECFMVKDLSNPSRYLC-KCQPGFTGARCTE   47 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEE-ECCTTEESTTSCE
T ss_pred             CCCcCCcCCCCCEEeecccccCCCCEEe-ECCCCCCCCCcCC
Confidence            45778899999999632    2245899 9999999999984

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=8.5e-06  Score=43.15  Aligned_cols=35  Identities=23%  Similarity=0.541  Sum_probs=25.0

Q ss_pred             CCCcCCCCCCCCCceecCCcccccCCCceeEeec-CCCCCCCC
Q psy15473         33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIK-SALGGNRT   74 (190)
Q Consensus        33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~-~~~~g~~c   74 (190)
                      |+|.+.||+|+|+|++....       .+.|+|+ ++|.|.+|
T Consensus         2 d~C~~~PC~ngG~C~~~~~~-------~y~C~C~~~gy~G~~C   37 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFD-------QYKCDCTRTGFYGENC   37 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETT-------EEEEECTTSSEETTTT
T ss_pred             CcCcCCCCCCCCEEEECCCC-------CEEEeCcCCCcCCcCc
Confidence            67999999999999875321       2577774 46666555

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.2e-06  Score=46.01  Aligned_cols=35  Identities=29%  Similarity=0.636  Sum_probs=28.6

Q ss_pred             CcCCCCCCCCCceec-CCCCeeeCCCCCCCCCCCCCC
Q psy15473        152 CKQCPCPNQGPCVQL-DDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       152 C~~~~C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      |.+.+|.|+|+|... ....++| .|++||+|.+||.
T Consensus         7 c~~~~C~ngG~C~~~~~~~~~~C-~C~~gy~G~~Ce~   42 (48)
T d1nqlb_           7 SHDGYCLHDGVCMYIEALDKYAC-NCVVGYIGERCQY   42 (48)
T ss_dssp             TTCCEECTTCEEEEETTTTEEEE-EECTTEESTTSCE
T ss_pred             CCCCCCCCCcEEeeeCCCCCeEE-eCCCCcccCCCCc
Confidence            556689999999764 3345899 9999999999984

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=7.9e-06  Score=46.23  Aligned_cols=28  Identities=39%  Similarity=0.974  Sum_probs=24.2

Q ss_pred             CCee-eCCCCCCCCCCccCCCCcccCCCC
Q psy15473        119 SGRC-ICQDNTGGDNCERCARGYYGNALE  146 (190)
Q Consensus       119 ~g~C-~C~~g~~G~~C~~C~~G~~g~~c~  146 (190)
                      .+.| .|+++|+|.+|++|.+||||.+..
T Consensus        17 ~~vC~~C~~~~~G~~Ce~C~~g~yg~P~~   45 (55)
T d1kloa1          17 EVVCTHCPTGTAGKRCELCDDGYFGDPLG   45 (55)
T ss_dssp             CEEECSCCTTEESTTSCEECTTEEEETTC
T ss_pred             CEEcCCCCCCCccCcccccCCccccCccc
Confidence            3467 599999999999999999998753

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.7e-05  Score=43.39  Aligned_cols=36  Identities=17%  Similarity=0.298  Sum_probs=26.4

Q ss_pred             CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         31 AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        31 ~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      ..++|.+.||.| |+|++..++        +.|.|+++|.|.+|+
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~~~--------y~C~C~~G~~G~~Ce   42 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGIGS--------FSCDCRSGWEGRFCQ   42 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCSSC--------CCEEECTTEESTTSC
T ss_pred             CCCcccCCCCCC-CEEECCCCC--------CeEeCCCCCcCCCcc
Confidence            457899999997 789876654        567777666666653

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6.7e-05  Score=37.69  Aligned_cols=33  Identities=33%  Similarity=0.846  Sum_probs=26.4

Q ss_pred             CCCCCCCCceec--CCCCeeeCCCCCCCCCCCCCCC
Q psy15473        155 CPCPNQGPCVQL--DDDQVVCSECPRGYGGEKMSPG  188 (190)
Q Consensus       155 ~~C~~~g~C~~~--~~~~~~C~~C~~G~~G~~C~~c  188 (190)
                      +.|+|+|+|+..  -++-.+| +||.+|.|.+||.-
T Consensus         2 C~ClNGG~Cvsyk~FS~I~rC-~CPk~f~G~HCEiD   36 (40)
T d2i9aa1           2 CDCLNGGTCVSNKYFSNIHWC-NCPKKFGGQHCEID   36 (40)
T ss_dssp             CCCCTTCEEEECSSSTTCEEE-ECCTTEESTTSCEE
T ss_pred             CccccCCEEEEEehhcCCEEe-cCCcccCceeEEec
Confidence            468999999863  2244799 99999999999853

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=6.4e-05  Score=41.35  Aligned_cols=33  Identities=18%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             CCCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        154 QCPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       154 ~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ...|.++++|.......+.| .|+.||+|.+||.
T Consensus        13 ~~yC~nGgcc~~~~~~~~~C-~C~~gy~G~rCe~   45 (50)
T d1ioxa_          13 KHYCIKGRCRFVVAEQTPSC-VCDEGYIGARCER   45 (50)
T ss_dssp             TTSCTTCCEEEETTTTEEEE-CCCTTEETTTTCE
T ss_pred             CCCccCCeEEEeCCCCCcEe-ECCCCCeeCCCcc
Confidence            34699999997665566899 9999999999985

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00035  Score=38.78  Aligned_cols=37  Identities=16%  Similarity=0.328  Sum_probs=26.6

Q ss_pred             CCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCC
Q psy15473         34 DCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRG   76 (190)
Q Consensus        34 ~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~   76 (190)
                      +|.+.+|+|+|+|......      ..+.|.|+++|.|.+|+.
T Consensus         8 ~c~~~~C~NgG~C~~~~~~------~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_           8 SSYDGYCLNGGVCMHIESL------DSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             TTSSCCSCSSCEEEEESSS------SCEEEECCTTCCSSSSCC
T ss_pred             CCCCCCCCCCcEeeccCCC------CCeEeECCCCCcCCCCcc
Confidence            4778899999999865432      126788877777777643

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00022  Score=37.86  Aligned_cols=33  Identities=33%  Similarity=0.750  Sum_probs=26.4

Q ss_pred             CCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473        148 AVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       148 ~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G  182 (190)
                      ++++|+..++...++|++.. |+|+| .|++||++
T Consensus         4 DidEC~~~~~~~~~~C~Nt~-Gsy~C-~C~~Gy~~   36 (43)
T d1emoa1           4 DMDECKEPDVCKHGQCINTD-GSYRC-ECPFGYIL   36 (43)
T ss_dssp             CCCSSSSTTSCSSSCCCCCS-SCCCC-CCCTTEEE
T ss_pred             ceeccCCcCCCCCCEeECCC-CCeEe-ECCCCccc
Confidence            56888766655678999876 77999 99999973

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=7.7e-05  Score=40.79  Aligned_cols=32  Identities=22%  Similarity=0.440  Sum_probs=26.4

Q ss_pred             CCCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        155 CPCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       155 ~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      .-|.|++.|.......+.| .|++||+|.+||.
T Consensus        13 ~yClnGgcc~~~~~~~~~C-~C~~gy~G~RCe~   44 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPAC-VCHSGYVGARCEH   44 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEE-EECTTEESTTSCE
T ss_pred             CEeeCCeEEecCCCCCcEe-ECCCCCEecCCcc
Confidence            3588888886665566899 9999999999985

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00037  Score=37.89  Aligned_cols=36  Identities=14%  Similarity=0.251  Sum_probs=25.3

Q ss_pred             CCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         34 DCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        34 ~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      +|.+.+|.|+|+|.......      .+.|.|..+|.|.+|+
T Consensus         6 ~c~~~~C~ngG~C~~~~~~~------~~~C~C~~gy~G~~Ce   41 (48)
T d1nqlb_           6 LSHDGYCLHDGVCMYIEALD------KYACNCVVGYIGERCQ   41 (48)
T ss_dssp             STTCCEECTTCEEEEETTTT------EEEEEECTTEESTTSC
T ss_pred             CCCCCCCCCCcEEeeeCCCC------CeEEeCCCCcccCCCC
Confidence            46678999999998765421      2567777777666664

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00017  Score=41.70  Aligned_cols=41  Identities=20%  Similarity=0.345  Sum_probs=26.4

Q ss_pred             CCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         32 VTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        32 ~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      .++|.+.||+|+|+|..+....   ....+.|.|+++|.|.+|+
T Consensus         6 c~ec~~~~C~NgG~C~~~~~~~---~~~~y~C~C~~gy~G~~Ce   46 (63)
T d1haea_           6 CAEKEKTFCVNGGECFMVKDLS---NPSRYLCKCQPGFTGARCT   46 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSS---SSCCEEEECCTTEESTTSC
T ss_pred             CCCCcCCcCCCCCEEeeccccc---CCCCEEeECCCCCCCCCcC
Confidence            4578889999999997654211   1123567776666666554

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00033  Score=37.66  Aligned_cols=33  Identities=30%  Similarity=0.679  Sum_probs=24.7

Q ss_pred             cCCCCCCCCCce-ecCCCCeeeCCCCCCCCCCCCCC
Q psy15473        153 KQCPCPNQGPCV-QLDDDQVVCSECPRGYGGEKMSP  187 (190)
Q Consensus       153 ~~~~C~~~g~C~-~~~~~~~~C~~C~~G~~G~~C~~  187 (190)
                      ....|.+ |.|. ......+.| .|++||+|.+|+.
T Consensus        10 ~~~yC~n-G~C~~~~~~~~~~C-~C~~gY~G~RCe~   43 (46)
T d1k36a_          10 MNGYCLH-GQCIYLVDMSQNYC-RCEVGYTGVRCEH   43 (46)
T ss_dssp             CCSSCSS-EEEEEETTTTEEEE-EECTTCSSTTSCC
T ss_pred             CCCcCcC-CEEEEeCCCCccEe-ECCCCceecCcee
Confidence            3457887 6674 333355899 9999999999985

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0014  Score=34.73  Aligned_cols=34  Identities=26%  Similarity=0.752  Sum_probs=26.2

Q ss_pred             CCCCCcC--CCCCCCCCceecCCCCeeeCCCCCCCCCCC
Q psy15473        148 AVTDCKQ--CPCPNQGPCVQLDDDQVVCSECPRGYGGEK  184 (190)
Q Consensus       148 ~~~~C~~--~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~  184 (190)
                      ++++|..  ..|. +++|++.. |+|+| .|++||.+..
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~-Gsy~C-~C~~Gy~~~~   37 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTP-GDFEC-KCDEGYESGF   37 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEET-TEEEE-CCCSSEEECT
T ss_pred             cccccCCCCCCCC-CCEeEcCC-CCeEE-eCCCCCccCC
Confidence            5678864  3465 58999987 77999 9999998753

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0028  Score=33.30  Aligned_cols=32  Identities=25%  Similarity=0.686  Sum_probs=23.3

Q ss_pred             CCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCC
Q psy15473        148 AVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYG  181 (190)
Q Consensus       148 ~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~  181 (190)
                      ++++|+..+..-.+.|++.. ++|+| .|++||.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~-G~y~C-~C~~Gy~   33 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTP-GSYIC-DCPPDFE   33 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEET-TEEEE-ECCTTCE
T ss_pred             CccccCCCCcCcCCEeECCC-CCEEE-ecCCCCE
Confidence            56778643322357899987 77999 9999994

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0019  Score=33.87  Aligned_cols=31  Identities=29%  Similarity=0.756  Sum_probs=22.9

Q ss_pred             CCCCc--CCCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473        149 VTDCK--QCPCPNQGPCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       149 ~~~C~--~~~C~~~g~C~~~~~~~~~C~~C~~G~~G  182 (190)
                      +++|+  +..|. ++.|++.. ++|+| .|++||.-
T Consensus         2 idEC~~~~~~C~-~~~C~Nt~-Gsy~C-~C~~Gy~l   34 (42)
T d1lmja2           2 IDECQRDPLLCR-GGVCHNTE-GSYRC-ECPPGHQL   34 (42)
T ss_dssp             CCHHHHCSSTTT-TSEEEEET-TEEEE-ESCTTSCC
T ss_pred             ccccCCCCCCCC-CCEeECCC-CCeEE-eCCCCCeE
Confidence            45564  33464 57999986 77999 99999973

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.0017  Score=33.60  Aligned_cols=27  Identities=22%  Similarity=0.669  Sum_probs=22.5

Q ss_pred             CCCCCCCCceecCCCCeeeCCCCCCCCCC
Q psy15473        155 CPCPNQGPCVQLDDDQVVCSECPRGYGGE  183 (190)
Q Consensus       155 ~~C~~~g~C~~~~~~~~~C~~C~~G~~G~  183 (190)
                      ..|+.+++|++.. ++|+| .|++||+|.
T Consensus         7 ~~C~~~A~C~Nt~-Gsy~C-~C~~Gy~Gd   33 (40)
T d1gl4a2           7 HQCSVHAECRDYA-TGFCC-RCVANYTGN   33 (40)
T ss_dssp             GGSCTTEEEEECS-SCEEE-EECTTEEEC
T ss_pred             CCCCCCCEeecCC-CCeEe-ECCCCCcCC
Confidence            3577789999876 77999 999999875

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0085  Score=29.82  Aligned_cols=33  Identities=27%  Similarity=0.554  Sum_probs=22.3

Q ss_pred             CCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         38 CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        38 ~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      +.|+|+|+|+..--     +.+...|.|+..|+|.+|+
T Consensus         2 C~ClNGG~Cvsyk~-----FS~I~rC~CPk~f~G~HCE   34 (40)
T d2i9aa1           2 CDCLNGGTCVSNKY-----FSNIHWCNCPKKFGGQHCE   34 (40)
T ss_dssp             CCCCTTCEEEECSS-----STTCEEEECCTTEESTTSC
T ss_pred             CccccCCEEEEEeh-----hcCCEEecCCcccCceeEE
Confidence            57899999987542     3344677777777666664

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0074  Score=31.22  Aligned_cols=16  Identities=25%  Similarity=0.821  Sum_probs=11.5

Q ss_pred             CceeecCCCCCCCCCc
Q psy15473          2 FRRCICQDNTGGDNCE   17 (190)
Q Consensus         2 ~~~C~C~~g~~G~~C~   17 (190)
                      .++|+|.++|+|+.||
T Consensus        25 ~G~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          25 CGKCRCHPGFEGSACQ   40 (41)
T ss_dssp             TTEEEECTTCCTTTTC
T ss_pred             CCEEEcCCCCcccCcc
Confidence            4677777777777775

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.01  Score=30.91  Aligned_cols=19  Identities=37%  Similarity=1.066  Sum_probs=14.8

Q ss_pred             CceeecC-CCCCCCCCccCC
Q psy15473          2 FRRCICQ-DNTGGDNCERCA   20 (190)
Q Consensus         2 ~~~C~C~-~g~~G~~C~~C~   20 (190)
                      -|+|+|. ++|+|+.||.|+
T Consensus        21 cG~C~C~~~gy~G~~Ce~Cp   40 (43)
T d1jv2b5          21 CGSCVCIQPGSYGDTCEKCP   40 (43)
T ss_dssp             TTEEEECCSSCBSTTSCBCT
T ss_pred             CCEeEeCCCCccCCccccCC
Confidence            3678884 689999988875

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.006  Score=31.84  Aligned_cols=26  Identities=27%  Similarity=0.604  Sum_probs=21.1

Q ss_pred             CCCCCCceecCCCCeeeCCCC-CCCCCCCCCCC
Q psy15473        157 CPNQGPCVQLDDDQVVCSECP-RGYGGEKMSPG  188 (190)
Q Consensus       157 C~~~g~C~~~~~~~~~C~~C~-~G~~G~~C~~c  188 (190)
                      |+.+|+|+-     ++| .|. +||.|+.||+|
T Consensus        13 Cng~G~C~c-----G~C-~C~~~gy~G~~Ce~C   39 (43)
T d1jv2b5          13 CSGRGKCEC-----GSC-VCIQPGSYGDTCEKC   39 (43)
T ss_dssp             GGGTEEEET-----TEE-EECCSSCBSTTSCBC
T ss_pred             ECCCCEEEC-----CEe-EeCCCCccCCccccC
Confidence            777888875     577 784 79999999987

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.015  Score=30.37  Aligned_cols=24  Identities=21%  Similarity=0.504  Sum_probs=18.5

Q ss_pred             CCCCCCcCCCCCCCCCceecCCcc
Q psy15473         30 GAVTDCKQCPCPNQGPCVQLDDDQ   53 (190)
Q Consensus        30 ~~~~~C~~~~C~~~g~C~~~~~~~   53 (190)
                      .++|+|...++..++.|++..+++
T Consensus         3 vDidEC~~~~~~~~~~C~Nt~Gsy   26 (43)
T d1emoa1           3 VDMDECKEPDVCKHGQCINTDGSY   26 (43)
T ss_dssp             CCCCSSSSTTSCSSSCCCCCSSCC
T ss_pred             cceeccCCcCCCCCCEeECCCCCe
Confidence            367899877777778899988763

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.021  Score=29.47  Aligned_cols=28  Identities=29%  Similarity=0.891  Sum_probs=19.8

Q ss_pred             CCCc-CCCCCCCCCceecCCCCeeeCCCCCCCC
Q psy15473        150 TDCK-QCPCPNQGPCVQLDDDQVVCSECPRGYG  181 (190)
Q Consensus       150 ~~C~-~~~C~~~g~C~~~~~~~~~C~~C~~G~~  181 (190)
                      ++|+ +.+|.  ..|++.. ++|+| .|++||.
T Consensus         2 dEC~~~~~C~--~~C~n~~-Gsy~C-~C~~Gy~   30 (41)
T d1i0ua2           2 DECQDPDTCS--QLCVNLE-GGYKC-QCEEGFQ   30 (41)
T ss_dssp             CTTTTTTSCS--SCEECSS-SCCEE-CCCTTEE
T ss_pred             ccCCCCCCCC--CEeECCC-CCEEe-ECCCCCe
Confidence            4453 23453  4788765 77999 9999997

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.0048  Score=32.39  Aligned_cols=32  Identities=28%  Similarity=0.806  Sum_probs=23.3

Q ss_pred             CCCCCcC--CCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473        148 AVTDCKQ--CPCPNQGPCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       148 ~~~~C~~--~~C~~~g~C~~~~~~~~~C~~C~~G~~G  182 (190)
                      ++++|..  ..|. .++|++.. |+|+| .|++||.-
T Consensus         2 DinEC~~~~~~c~-~~~C~Nt~-Gsy~C-~C~~Gy~l   35 (43)
T d1uzka2           2 DIDECQELPGLCQ-GGKCINTF-GSFQC-RCPTGYYL   35 (43)
T ss_dssp             ECCHHHHCGGGGB-TSEEEECS-SCEEE-ECCTTCCB
T ss_pred             CcccccCCCCCcC-CCEEECCC-CCeEe-ECCCCCeE
Confidence            3566753  3354 46899986 77999 99999964

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.0073  Score=31.25  Aligned_cols=28  Identities=32%  Similarity=0.769  Sum_probs=21.1

Q ss_pred             CCCCCCceec-CCCCeeeCCCCCCCCCCCCC
Q psy15473        157 CPNQGPCVQL-DDDQVVCSECPRGYGGEKMS  186 (190)
Q Consensus       157 C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~  186 (190)
                      |.+ |+|... +.....| .|..||+|.+|+
T Consensus        10 Cih-G~C~~i~~l~~~~C-~C~~gY~G~RCq   38 (41)
T d1xdtr_          10 CIH-GECKYVKELRAPSC-ICHPGYHGERCH   38 (41)
T ss_dssp             CSS-EEECCBGGGTBCCE-EECTTEESTTCC
T ss_pred             eEC-cEEeecCcCCCcee-ECCCCCeecCcc
Confidence            665 888532 2245789 899999999997

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.07  Score=28.09  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             cCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCC
Q psy15473         36 KQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRG   76 (190)
Q Consensus        36 ~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~   76 (190)
                      ...+|.| |.|....+.      ....|.|+.+|.|.+|+.
T Consensus        10 ~~~yC~n-G~C~~~~~~------~~~~C~C~~gY~G~RCe~   43 (46)
T d1k36a_          10 MNGYCLH-GQCIYLVDM------SQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             CCSSCSS-EEEEEETTT------TEEEEEECTTCSSTTSCC
T ss_pred             CCCcCcC-CEEEEeCCC------CccEeECCCCceecCcee
Confidence            3568988 667654432      125677777777766643

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.049  Score=28.45  Aligned_cols=31  Identities=19%  Similarity=0.513  Sum_probs=20.8

Q ss_pred             CCCCCcC--CCCCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473         31 AVTDCKQ--CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG   70 (190)
Q Consensus        31 ~~~~C~~--~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~   70 (190)
                      ++|+|..  .+|. ++.|++..++        +.|.|+++|.
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~Gs--------y~C~C~~Gy~   34 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTPGD--------FECKCDEGYE   34 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEETTE--------EEECCCSSEE
T ss_pred             cccccCCCCCCCC-CCEeEcCCCC--------eEEeCCCCCc
Confidence            5788874  3475 4789999876        4566555543

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.018  Score=29.57  Aligned_cols=30  Identities=23%  Similarity=0.582  Sum_probs=21.4

Q ss_pred             CCCCc-CCCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473        149 VTDCK-QCPCPNQGPCVQLDDDQVVCSECPRGYGG  182 (190)
Q Consensus       149 ~~~C~-~~~C~~~g~C~~~~~~~~~C~~C~~G~~G  182 (190)
                      +++|+ ..+|.  ..|++.. ++|+| .|++||..
T Consensus         2 idEC~~~~~C~--~~C~N~~-Gsy~C-~C~~Gy~l   32 (40)
T d1dx5i3           2 IDECENGGFCS--GVCHNLP-GTFEC-ICGPDSAL   32 (40)
T ss_dssp             CCHHHHCSSCS--SEEEECS-SSEEE-EECSSSSC
T ss_pred             ccccCCCcCcc--CEeeCCC-CCeEe-ECCCCCee
Confidence            34554 24564  5788876 77999 99999975

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.048  Score=29.32  Aligned_cols=31  Identities=10%  Similarity=0.068  Sum_probs=17.6

Q ss_pred             CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCC
Q psy15473         37 QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRT   74 (190)
Q Consensus        37 ~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c   74 (190)
                      ...|.|++.|.......       ..|.|+.+|.|.+|
T Consensus        13 ~~yC~nGgcc~~~~~~~-------~~C~C~~gy~G~rC   43 (50)
T d1ioxa_          13 KHYCIKGRCRFVVAEQT-------PSCVCDEGYIGARC   43 (50)
T ss_dssp             TTSCTTCCEEEETTTTE-------EEECCCTTEETTTT
T ss_pred             CCCccCCeEEEeCCCCC-------cEeECCCCCeeCCC
Confidence            45799988776444321       35655555555444

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.064  Score=29.09  Aligned_cols=19  Identities=26%  Similarity=0.644  Sum_probs=16.1

Q ss_pred             CCceecCCCCeeeCCCCCCCC
Q psy15473        161 GPCVQLDDDQVVCSECPRGYG  181 (190)
Q Consensus       161 g~C~~~~~~~~~C~~C~~G~~  181 (190)
                      ..|++.. |+|+| .|++||+
T Consensus        24 ~~C~Nt~-GsY~C-~C~~Gy~   42 (53)
T d1apqa_          24 HLCHNYV-GGYFC-SCRPGYE   42 (53)
T ss_dssp             SEEEEET-TEEEE-ECSTTCE
T ss_pred             CEeEcCC-CCeEe-ECCCCCe
Confidence            3688876 77999 9999996

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.06  Score=27.86  Aligned_cols=31  Identities=16%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCC
Q psy15473         31 AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSAL   69 (190)
Q Consensus        31 ~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~   69 (190)
                      ++|+|+..+..-++.|++..++        +.|.|+++|
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~--------y~C~C~~Gy   32 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGS--------YICDCPPDF   32 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTE--------EEEECCTTC
T ss_pred             CccccCCCCcCcCCEeECCCCC--------EEEecCCCC
Confidence            5678875432235689998876        466666555

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.20  E-value=0.073  Score=25.04  Aligned_cols=24  Identities=25%  Similarity=0.639  Sum_probs=17.7

Q ss_pred             CCCCCCceecCCCCeeeCCCCCCCCCCCCC
Q psy15473        157 CPNQGPCVQLDDDQVVCSECPRGYGGEKMS  186 (190)
Q Consensus       157 C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~  186 (190)
                      |..+|.|.-     +.| .|.+||+|..|.
T Consensus         5 C~ghG~C~C-----G~C-~C~~gw~G~~CN   28 (31)
T d1jv2b4           5 CSGHGQCSC-----GDC-LCDSDWTGYYCN   28 (31)
T ss_dssp             SCCCTTCCS-----TTT-CCCTTEESSSSC
T ss_pred             ccCCCcccC-----Cce-EccCCccccccc
Confidence            556676654     467 789999999875

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.12  Score=26.98  Aligned_cols=19  Identities=26%  Similarity=0.574  Sum_probs=16.0

Q ss_pred             CCceecCCCCeeeCCCCCCCC
Q psy15473        161 GPCVQLDDDQVVCSECPRGYG  181 (190)
Q Consensus       161 g~C~~~~~~~~~C~~C~~G~~  181 (190)
                      ..|++.. ++|+| .|++||.
T Consensus        16 ~~C~Nt~-Gsy~C-~C~~Gy~   34 (45)
T d1szba2          16 HHCHNHL-GGFYC-SCRAGYV   34 (45)
T ss_dssp             SEEEEET-TEEEE-ECCTTEE
T ss_pred             CCCccCC-CCeEE-ECCCCCe
Confidence            5788876 77999 9999996

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.50  E-value=0.069  Score=27.21  Aligned_cols=25  Identities=12%  Similarity=0.211  Sum_probs=17.1

Q ss_pred             CCCCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473         38 CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG   70 (190)
Q Consensus        38 ~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~   70 (190)
                      ..|+.++.|++..++        +.|.|+++|.
T Consensus         7 ~~C~~~A~C~Nt~Gs--------y~C~C~~Gy~   31 (40)
T d1gl4a2           7 HQCSVHAECRDYATG--------FCCRCVANYT   31 (40)
T ss_dssp             GGSCTTEEEEECSSC--------EEEEECTTEE
T ss_pred             CCCCCCCEeecCCCC--------eEeECCCCCc
Confidence            367788899988765        4666655553

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.96  E-value=0.11  Score=27.14  Aligned_cols=19  Identities=26%  Similarity=0.506  Sum_probs=16.0

Q ss_pred             CCceecCCCCeeeCCCCCCCC
Q psy15473        161 GPCVQLDDDQVVCSECPRGYG  181 (190)
Q Consensus       161 g~C~~~~~~~~~C~~C~~G~~  181 (190)
                      ..|++.. ++|+| .|++||.
T Consensus        16 ~~C~Nt~-gsy~C-~C~~Gy~   34 (45)
T d1nt0a3          16 HYCHNYL-GGYYC-SCRVGYI   34 (45)
T ss_dssp             SEEEEET-TEEEE-ECCTTEE
T ss_pred             CEeecCC-CCEEE-eCCCCCE
Confidence            5788876 77999 9999995

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.16  Score=26.98  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=17.9

Q ss_pred             CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473         37 QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR   75 (190)
Q Consensus        37 ~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~   75 (190)
                      ...|.|++.|......       ...|.|+.+|.|.+|+
T Consensus        12 ~~yClnGgcc~~~~~~-------~~~C~C~~gy~G~RCe   43 (49)
T d1moxc_          12 TQFCFHGTCRFLVQED-------KPACVCHSGYVGARCE   43 (49)
T ss_dssp             SCSSTTEEEEEETTTT-------EEEEEECTTEESTTSC
T ss_pred             CCEeeCCeEEecCCCC-------CcEeECCCCCEecCCc
Confidence            3568887766543322       1456666555555553

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.71  E-value=0.78  Score=22.26  Aligned_cols=24  Identities=29%  Similarity=0.869  Sum_probs=19.4

Q ss_pred             CCCCCCCCceecCCCCeeeCCCCCCCC
Q psy15473        155 CPCPNQGPCVQLDDDQVVCSECPRGYG  181 (190)
Q Consensus       155 ~~C~~~g~C~~~~~~~~~C~~C~~G~~  181 (190)
                      .||. +|+|.+.. +.+.| .|..||.
T Consensus         8 npCG-nGTCtNvi-GgFec-~C~~GFe   31 (39)
T d1emoa2           8 NPCG-NGTCKNVI-GGFEC-TCEEGFE   31 (39)
T ss_dssp             CSSS-SSCEEECS-SSEEE-CCSSSSC
T ss_pred             CccC-Cceeeecc-cceEE-eecCCcC
Confidence            5675 49999887 66999 9999985