Psyllid ID: psy15495

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MYHLGTSSLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVSTIDR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHcccccccccccccccccEEEccccccccEEEcccccccccccccccEEEEcccccEEEEcccccccccccccccccccHHHHEEEccEEcccccHHHHHHHHHEEEEEcccEEccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcHHHHHHHcccccccccccccccccccccEEEcccccccEEEEEccccccccccccccEEEEEcccccEEEccccccccccccccccccHHHHHHHHHHHHcccccccEEEHHHHHHHHcccccEEEcccccccccEcEEEEcHHHcccccccc
Coil and Loop (DISEMBL)
myhlgtssLTTLNFMFQTlsldstlycptmfdgwscwnatlagetartpcpnfivgfDSRRFALRTCLengtwfqhpvtrkfwsnyttcidiedLKVYLFLSCCfngkknglIINLRFALRTCLengtwfqhpvtrkfwsnyttcidiedlkvstidr
Flexible Loop (DISEMBL)
myhlgtssLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENgtwfqhpvtrkfwSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTwfqhpvtrkfwsnyttcidiedlkvstidr
Low Complexity Region (SEG)
MYHLGTSSLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVSTIDR
Disordered region (IsUnstruct)
*******SLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKV*****
Disordered Region (DISOPRED)
MYHLG**SL****************YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVSTI**
Disordered Region (DISEMBL)
MYHLGTSSLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVSTIDR
Disordered Region (DISPRO)
MYHLGTSSLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVST***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYHLGTSSLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVSTIDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q60755	515	Calcitonin receptor OS=Mu	yes	N/A	0.411	0.126	0.476	1e-12
P32214	516	Calcitonin receptor OS=Ra	yes	N/A	0.405	0.124	0.437	3e-12
P25117	498	Calcitonin receptor OS=Su	yes	N/A	0.411	0.130	0.446	2e-11
A6QP74	462	Calcitonin gene-related p	no	N/A	0.411	0.140	0.384	2e-11
Q8WN93	462	Calcitonin gene-related p	no	N/A	0.411	0.140	0.384	4e-11
Q16602	461	Calcitonin gene-related p	yes	N/A	0.411	0.140	0.384	5e-11
Q9IB86	465	Calcitonin gene-related p	N/A	N/A	0.468	0.159	0.379	5e-11
Q63118	464	Calcitonin gene-related p	no	N/A	0.481	0.163	0.355	6e-11
Q9R1W5	463	Calcitonin gene-related p	no	N/A	0.411	0.140	0.4	8e-11
Q8AXU4	465	Calcitonin gene-related p	N/A	N/A	0.398	0.135	0.412	2e-10

>sp|Q60755|CALCR_MOUSE Calcitonin receptor OS=Mus musculus GN=Calcr PE=2 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 40/65 (61%)

Query: 25  LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
           LYC   +DGW CW+ T AG TA   CP++   FD+     + C ENG WF+HP + + WS
Sbjct: 70  LYCNRTWDGWMCWDDTPAGATAYQHCPDYFPDFDTAEKVSKYCDENGEWFRHPDSNRTWS 129

Query: 85  NYTTC 89
           NYT C
Sbjct: 130 NYTLC 134

This is a receptor for calcitonin. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. The calcitonin receptor is thought to couple to the heterotrimeric guanosine triphosphate-binding protein that is sensitive to cholera toxin.
Mus musculus (taxid: 10090)

>sp|P32214|CALCR_RAT Calcitonin receptor OS=Rattus norvegicus GN=Calcr PE=2 SV=1

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 37/64 (57%)

Query: 26  YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSN 85
           YC   +DGW CW+ T AG  +   CP++   FD      + C ENG WF+HP + + WSN
Sbjct: 71  YCNRTWDGWMCWDDTPAGVMSYQHCPDYFPDFDPTEKVSKYCDENGEWFRHPDSNRTWSN 130

Query: 86  YTTC 89
           YT C
Sbjct: 131 YTLC 134

This is a receptor for calcitonin. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. The calcitonin receptor is thought to couple to the heterotrimeric guanosine triphosphate-binding protein that is sensitive to cholera toxin.

Rattus norvegicus (taxid: 10116)

>sp|P25117|CALCR_PIG Calcitonin receptor OS=Sus scrofa GN=CALCR PE=2 SV=2

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 39/65 (60%)

Query: 25  LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
           LYC   +DGWSCW+ T AG  A   CP++   FD+     + C E+G W++HP +   WS
Sbjct: 71  LYCNRTWDGWSCWDDTPAGVLAEQYCPDYFPDFDAAEKVTKYCGEDGDWYRHPESNISWS 130

Query: 85  NYTTC 89
           NYT C
Sbjct: 131 NYTMC 135

This is a receptor for calcitonin. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. The calcitonin receptor is thought to couple to the heterotrimeric guanosine triphosphate-binding protein that is sensitive to cholera toxin. The receptor can also couple to an additional signaling pathway via a pertussis toxin-sensitive g protein in isolated osteoclasts and in LLC-PK1 cells.

Sus scrofa (taxid: 9823)

>sp|A6QP74|CALRL_BOVIN Calcitonin gene-related peptide type 1 receptor OS=Bos taurus GN=CALCRL PE=2 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 25  LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
           +YC   +DGW CWN   AG  +   CP++   FD      + C ++G WF+HP + + W+
Sbjct: 64  IYCNRTWDGWLCWNDVAAGTESMQHCPDYFQDFDPSEKVTKICDQDGNWFRHPASNRTWT 123

Query: 85  NYTTC 89
           NYT C
Sbjct: 124 NYTQC 128

Receptor for calcitonin-gene-related peptide (CGRP) together with RAMP1 and receptor for adrenomedullin together with RAMP2 or RAMP3 (By similarity). The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Bos taurus (taxid: 9913)

>sp|Q8WN93|CALRL_PIG Calcitonin gene-related peptide type 1 receptor OS=Sus scrofa GN=CALCRL PE=1 SV=1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 25  LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
           +YC   +DGW CWN   AG  +   CP++   FD      + C ++G WF+HP + + W+
Sbjct: 64  IYCNRTWDGWLCWNDVAAGTESMQHCPDYFQDFDPSEKVTKICDQDGNWFRHPESNRTWT 123

Query: 85  NYTTC 89
           NYT C
Sbjct: 124 NYTQC 128

Receptor for calcitonin-gene-related peptide (CGRP) together with RAMP1 and receptor for adrenomedullin together with RAMP2 or RAMP3. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Sus scrofa (taxid: 9823)

>sp|Q16602|CALRL_HUMAN Calcitonin gene-related peptide type 1 receptor OS=Homo sapiens GN=CALCRL PE=1 SV=2

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query: 25  LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
           +YC   +DGW CWN   AG  +   CP++   FD      + C ++G WF+HP + + W+
Sbjct: 63  VYCNRTWDGWLCWNDVAAGTESMQLCPDYFQDFDPSEKVTKICDQDGNWFRHPASNRTWT 122

Query: 85  NYTTC 89
           NYT C
Sbjct: 123 NYTQC 127

Receptor for calcitonin-gene-related peptide (CGRP) together with RAMP1 and receptor for adrenomedullin together with RAMP3 (By similarity). Receptor for adrenomedullin together with RAMP2. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Homo sapiens (taxid: 9606)

>sp|Q9IB86|CALRL_PAROL Calcitonin gene-related peptide type 1 receptor OS=Paralichthys olivaceus GN=calcrl PE=2 SV=1

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 16  FQTLSLDSTL-----YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLEN 70
           +Q +  DST       C   +DGW CW+ T AG  +   CP++   FD      + C + 
Sbjct: 51  YQKIMKDSTHSRQEPLCNRTWDGWLCWDDTKAGVISEQHCPDYFQDFDPSEMVTKICADT 110

Query: 71  GTWFQHPVTRKFWSNYTTC 89
           G WF HPV+ + WSNYT C
Sbjct: 111 GDWFLHPVSNRTWSNYTRC 129

Receptor for calcitonin-gene-related peptide (CGRP) (By similarity). Receptor specificity may be modulated by accessory proteins. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Paralichthys olivaceus (taxid: 8255)

>sp|Q63118|CALRL_RAT Calcitonin gene-related peptide type 1 receptor OS=Rattus norvegicus GN=Calcrl PE=2 SV=1

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%)

Query: 14  FMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTW 73
            M   +     LYC   +DGW CWN   AG  +   CP++   FD      + C ++G W
Sbjct: 52  IMQDPIQQGEGLYCNRTWDGWLCWNDVAAGTESMQYCPDYFQDFDPSEKVTKICDQDGNW 111

Query: 74  FQHPVTRKFWSNYTTC 89
           F+HP + + W+NYT C
Sbjct: 112 FRHPDSNRTWTNYTLC 127

Receptor for calcitonin-gene-related peptide (CGRP) together with RAMP1 and receptor for adrenomedullin together with RAMP2 or RAMP3 (By similarity). The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Rattus norvegicus (taxid: 10116)

>sp|Q9R1W5|CALRL_MOUSE Calcitonin gene-related peptide type 1 receptor OS=Mus musculus GN=Calcrl PE=2 SV=2

 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 25  LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
           LYC   +DGW CWN   AG  +   CP++   FD      + C ++G WF+HP + + W+
Sbjct: 62  LYCNRTWDGWLCWNDVAAGTESMQYCPDYFQDFDPSEKVTKICDQDGHWFRHPDSNRTWT 121

Query: 85  NYTTC 89
           NYT C
Sbjct: 122 NYTLC 126

Receptor for calcitonin-gene-related peptide (CGRP) together with RAMP1 and receptor for adrenomedullin together with RAMP2 or RAMP3. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Mus musculus (taxid: 10090)

>sp|Q8AXU4|CALRL_ONCGO Calcitonin gene-related peptide type 1 receptor OS=Oncorhynchus gorbuscha GN=calcrl PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query: 27  CPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNY 86
           C   +DGW CW+ T AG T+   CP++   FD      + C +NG WF HP + + W+NY
Sbjct: 67  CNRTWDGWLCWDDTEAGFTSEQYCPDYFQDFDPSELVTKICSDNGHWFLHPESNRTWTNY 126

Query: 87  TTC 89
           T C
Sbjct: 127 TRC 129

Receptor for calcitonin-gene-related peptide (CGRP) (By similarity). Receptor specificity may be modulated by accessory proteins. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase.

Oncorhynchus gorbuscha (taxid: 8017)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
328715789	466	PREDICTED: calcitonin gene-related pepti	0.481	0.163	0.605	1e-22
321458499	377	putative DH31 receptor [Daphnia pulex]	0.462	0.193	0.602	5e-22
118795187	427	AGAP001175-PA [Anopheles gambiae str. PE	0.474	0.175	0.6	2e-21
345481443	411	PREDICTED: calcitonin receptor-like isof	0.449	0.172	0.619	4e-20
345481445	492	PREDICTED: calcitonin receptor-like isof	0.449	0.144	0.619	5e-20
157113539	544	calcitonin receptor [Aedes aegypti]	0.474	0.137	0.52	2e-19
170052362	451	calcitonin receptor [Culex quinquefascia	0.449	0.157	0.549	2e-19
403182794	422	AAEL006490-PA, partial [Aedes aegypti]	0.468	0.175	0.527	2e-19
357612140	410	neuropeptide receptor B4 [Danaus plexipp	0.468	0.180	0.527	4e-19
340721170	466	PREDICTED: calcitonin receptor-like [Bom	0.449	0.152	0.577	6e-19

>gi|328715789|ref|XP_001945278.2| PREDICTED: calcitonin gene-related peptide type 1 receptor-like [Acyrthosiphon pisum]

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/76 (60%), Positives = 60/76 (78%)

Query: 22  DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRK 81
           DS  +CP  FDGW+C N T AGE A+ PCP FI+GFD++RF  +TCL +G+WF+HP + K
Sbjct: 39  DSDAWCPGEFDGWTCINRTKAGEVAKFPCPYFILGFDTKRFGQKTCLPDGSWFKHPDSNK 98

Query: 82  FWSNYTTCIDIEDLKV 97
            WSNYTTC+D+EDLK+
Sbjct: 99  TWSNYTTCVDLEDLKL 114

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321458499|gb|EFX69566.1| putative DH31 receptor [Daphnia pulex]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 54/73 (73%)

Query: 25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
          L+CP  FDGWSCWNAT AG  +  PCP FI GFD +R A + C E GTWF+HP +   WS
Sbjct: 7  LFCPPTFDGWSCWNATPAGRISVAPCPYFITGFDPQRMAHKICTEEGTWFRHPQSNLIWS 66

Query: 85 NYTTCIDIEDLKV 97
          NYTTC+D+EDL++
Sbjct: 67 NYTTCVDVEDLEM 79

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118795187|ref|XP_321982.3| AGAP001175-PA [Anopheles gambiae str. PEST] gi|116116654|gb|EAA00956.4| AGAP001175-PA [Anopheles gambiae str. PEST]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 55/75 (73%)

Query: 23 STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKF 82
          ST++CP  FDGWSCW  TLAG  A   CP F++GFD RR A RTC ENG+WF HP + + 
Sbjct: 2  STVFCPRRFDGWSCWEPTLAGTVAENWCPKFVLGFDPRRLAYRTCHENGSWFVHPHSGRE 61

Query: 83 WSNYTTCIDIEDLKV 97
          WSNYT CID ED+++
Sbjct: 62 WSNYTNCIDTEDMQL 76

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481443|ref|XP_001601649.2| PREDICTED: calcitonin receptor-like isoform 1 [Nasonia vitripennis]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 49/71 (69%)

Query: 26  YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSN 85
           YCP +FDGWSCW  T AG TA  PCP FI GFD    A + C  NGTWF HPVT K WSN
Sbjct: 37  YCPAIFDGWSCWPNTPAGTTAYAPCPAFITGFDPTLKAHKECEPNGTWFMHPVTHKIWSN 96

Query: 86  YTTCIDIEDLK 96
           YTTC+++ DL 
Sbjct: 97  YTTCVNLVDLS 107

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481445|ref|XP_003424370.1| PREDICTED: calcitonin receptor-like isoform 2 [Nasonia vitripennis]

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 49/71 (69%)

Query: 26  YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSN 85
           YCP +FDGWSCW  T AG TA  PCP FI GFD    A + C  NGTWF HPVT K WSN
Sbjct: 37  YCPAIFDGWSCWPNTPAGTTAYAPCPAFITGFDPTLKAHKECEPNGTWFMHPVTHKIWSN 96

Query: 86  YTTCIDIEDLK 96
           YTTC+++ DL 
Sbjct: 97  YTTCVNLVDLS 107

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113539|ref|XP_001651988.1| calcitonin receptor [Aedes aegypti]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 53/75 (70%)

Query: 22  DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRK 81
            + L+CP  FDGW+CW +  AG  A+  CPNF++GFD+ R A R C  NG+WF HP + +
Sbjct: 94  QTQLFCPRRFDGWTCWESQPAGTIAQNFCPNFVLGFDASRLAYRICHANGSWFTHPESGR 153

Query: 82  FWSNYTTCIDIEDLK 96
            WSNYT CID++D+K
Sbjct: 154 EWSNYTNCIDVDDMK 168

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052362|ref|XP_001862186.1| calcitonin receptor [Culex quinquefasciatus] gi|167873341|gb|EDS36724.1| calcitonin receptor [Culex quinquefasciatus]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 51/71 (71%)

Query: 26  YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSN 85
           +CP  FDGW+CW+A  AG  A   CPNF++GFD+ R A R C  NG+WF HP + + WSN
Sbjct: 92  FCPRRFDGWTCWDAQPAGTVAENYCPNFVLGFDANRLAFRVCNTNGSWFVHPESGREWSN 151

Query: 86  YTTCIDIEDLK 96
           YT C+D+ED+K
Sbjct: 152 YTNCVDLEDMK 162

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403182794|gb|EAT41922.2| AAEL006490-PA, partial [Aedes aegypti]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 53/74 (71%)

Query: 23 STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKF 82
          + L+CP  FDGW+CW +  AG  A+  CPNF++GFD+ R A R C  NG+WF HP + + 
Sbjct: 1  TQLFCPRRFDGWTCWESQPAGTIAQNFCPNFVLGFDASRLAYRICHANGSWFTHPESGRE 60

Query: 83 WSNYTTCIDIEDLK 96
          WSNYT CID++D+K
Sbjct: 61 WSNYTNCIDVDDMK 74

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612140|gb|EHJ67831.1| neuropeptide receptor B4 [Danaus plexippus]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 52/74 (70%)

Query: 22  DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRK 81
           +  L CP  FDG+ CW+ T AG TA   CP F++GFD +R+A + C+ENG WF HP   +
Sbjct: 46  EGALVCPRTFDGFLCWDETPAGATAFQSCPGFVIGFDPKRYAYKKCMENGVWFLHPEGNR 105

Query: 82  FWSNYTTCIDIEDL 95
            W+NYTTC+DI+DL
Sbjct: 106 PWTNYTTCVDIDDL 119

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721170|ref|XP_003398998.1| PREDICTED: calcitonin receptor-like [Bombus terrestris]

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 51/71 (71%)

Query: 26  YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSN 85
           YCP  FDGWSCW  T AG TA   CPNF+ GFD+   A + C  NGTWF+HPV+ + WSN
Sbjct: 42  YCPMTFDGWSCWPNTPAGTTAYIQCPNFVTGFDASLQAHKYCESNGTWFRHPVSDQVWSN 101

Query: 86  YTTCIDIEDLK 96
           YTTC++++DL 
Sbjct: 102 YTTCVNLQDLS 112

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
FB|FBgn0030437	486	hec "hector" [Drosophila melan	0.588	0.191	0.430	6.1e-20
FB|FBgn0052843	443	Dh31-R1 "Diuretic hormone 31 r	0.443	0.158	0.528	1.6e-18
ZFIN|ZDB-GENE-060503-420	598	calcr "calcitonin receptor" [D	0.430	0.113	0.485	1.6e-14
MGI|MGI:101950	515	Calcr "calcitonin receptor" [M	0.411	0.126	0.476	4.2e-14
UNIPROTKB|F1SFC3	498	CALCR "Calcitonin receptor" [S	0.411	0.130	0.446	7.8e-13
UNIPROTKB|P25117	498	CALCR "Calcitonin receptor" [S	0.411	0.130	0.446	7.8e-13
UNIPROTKB|F1P5E1	469	CALCR "Uncharacterized protein	0.487	0.164	0.405	8.9e-13
UNIPROTKB|F1NH61	470	CALCR "Uncharacterized protein	0.487	0.163	0.405	8.9e-13
UNIPROTKB|G3X6P6	462	CALCRL "Calcitonin gene-relate	0.436	0.149	0.376	1.4e-12
UNIPROTKB|A6QP74	462	CALCRL "Calcitonin gene-relate	0.411	0.140	0.384	1.8e-12

FB|FBgn0030437 hec "hector" [Drosophila melanogaster (taxid:7227)]

 Score = 243 (90.6 bits), Expect = 6.1e-20, P = 6.1e-20
 Identities = 40/93 (43%), Positives = 60/93 (64%)

Query:    10 TTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLE 69
             T ++    T   ++ L+CP  FDG+ CW  T AG      CP+F+ GF+ +  A +TCLE
Sbjct:   103 TVVSATMATNQKENRLFCPLNFDGYLCWPRTPAGTVLSQYCPDFVEGFNRKFLAHKTCLE 162

Query:    70 NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLS 102
             NG+W++HPV+ + WSNYT C+D EDL+   F++
Sbjct:   163 NGSWYRHPVSNQTWSNYTNCVDYEDLEFRQFIN 195

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0004948 "calcitonin receptor activity" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0008049 "male courtship behavior" evidence=IMP

FB|FBgn0052843 Dh31-R1 "Diuretic hormone 31 receptor 1" [Drosophila melanogaster (taxid:7227)]

 Score = 229 (85.7 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 37/70 (52%), Positives = 48/70 (68%)

Query:    26 YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSN 85
             +C   FDGW CW  T  G +A   CP+FI GFD  R+A + C  +G WF+HP+T K WSN
Sbjct:    67 HCAGTFDGWLCWPDTAVGTSAYELCPDFITGFDPARYAHKECGLDGEWFKHPLTNKTWSN 126

Query:    86 YTTCIDIEDL 95
             YTTC+++EDL
Sbjct:   127 YTTCVNLEDL 136

GO:0004948 "calcitonin receptor activity" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0008036 "diuretic hormone receptor activity" evidence=IDA

ZFIN|ZDB-GENE-060503-420 calcr "calcitonin receptor" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 33/68 (48%), Positives = 39/68 (57%)

Query:    23 STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKF 82
             S LYC   +DGW CW+ T AG      CPN+   FDS     + C E G WF+HP T + 
Sbjct:   196 SGLYCNRTWDGWLCWDDTPAGTFTSQYCPNYFADFDSTEKVTKYCDETGNWFRHPETNRT 255

Query:    83 WSNYTTCI 90
             WSNYT CI
Sbjct:   256 WSNYTLCI 263

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004948 "calcitonin receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:101950 Calcr "calcitonin receptor" [Mus musculus (taxid:10090)]

 Score = 190 (71.9 bits), Expect = 4.2e-14, P = 4.2e-14
 Identities = 31/65 (47%), Positives = 40/65 (61%)

Query:    25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
             LYC   +DGW CW+ T AG TA   CP++   FD+     + C ENG WF+HP + + WS
Sbjct:    70 LYCNRTWDGWMCWDDTPAGATAYQHCPDYFPDFDTAEKVSKYCDENGEWFRHPDSNRTWS 129

Query:    85 NYTTC 89
             NYT C
Sbjct:   130 NYTLC 134

GO:0001669 "acrosomal vesicle" evidence=IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004872 "receptor activity" evidence=ISO

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004948 "calcitonin receptor activity" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007166 "cell surface receptor signaling pathway" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=ISO;IDA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO;IDA

GO:0008565 "protein transporter activity" evidence=ISO

GO:0015031 "protein transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030279 "negative regulation of ossification" evidence=IMP

GO:0030316 "osteoclast differentiation" evidence=IDA

GO:0030424 "axon" evidence=ISO

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031623 "receptor internalization" evidence=ISO

GO:0032841 "calcitonin binding" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043488 "regulation of mRNA stability" evidence=IDA

GO:0044441 "cilium part" evidence=IDA

GO:0045124 "regulation of bone resorption" evidence=IMP

GO:0045762 "positive regulation of adenylate cyclase activity" evidence=ISO

GO:0051384 "response to glucocorticoid stimulus" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO

UNIPROTKB|F1SFC3 CALCR "Calcitonin receptor" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 7.8e-13, P = 7.8e-13
 Identities = 29/65 (44%), Positives = 39/65 (60%)

Query:    25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
             LYC   +DGWSCW+ T AG  A   CP++   FD+     + C E+G W++HP +   WS
Sbjct:    71 LYCNRTWDGWSCWDDTPAGVLAEQYCPDYFPDFDAAEKVTKYCGEDGDWYRHPESNISWS 130

Query:    85 NYTTC 89
             NYT C
Sbjct:   131 NYTMC 135

GO:0005886 "plasma membrane" evidence=IEA

GO:0043488 "regulation of mRNA stability" evidence=IEA

GO:0030316 "osteoclast differentiation" evidence=IEA

GO:0030279 "negative regulation of ossification" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0004948 "calcitonin receptor activity" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P25117 CALCR "Calcitonin receptor" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 7.8e-13, P = 7.8e-13
 Identities = 29/65 (44%), Positives = 39/65 (60%)

Query:    25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
             LYC   +DGWSCW+ T AG  A   CP++   FD+     + C E+G W++HP +   WS
Sbjct:    71 LYCNRTWDGWSCWDDTPAGVLAEQYCPDYFPDFDAAEKVTKYCGEDGDWYRHPESNISWS 130

Query:    85 NYTTC 89
             NYT C
Sbjct:   131 NYTMC 135

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0032841 "calcitonin binding" evidence=IDA

GO:0004948 "calcitonin receptor activity" evidence=IDA

GO:0007202 "activation of phospholipase C activity" evidence=IDA

GO:0045762 "positive regulation of adenylate cyclase activity" evidence=IDA

UNIPROTKB|F1P5E1 CALCR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 8.9e-13, P = 8.9e-13
 Identities = 32/79 (40%), Positives = 42/79 (53%)

Query:    25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
             L+C   +DGW CW+ T AG      CP++   FD    A + C E G WF+HP + + WS
Sbjct:    69 LFCNRTWDGWLCWDDTPAGRITAQNCPDYFPDFDPTERASKYCDETGNWFRHPESNRTWS 128

Query:    85 NYTTCIDI--EDLKVYLFL 101
             NYT C     E LK+   L
Sbjct:   129 NYTLCNSFTSEKLKMAFIL 147

GO:0004948 "calcitonin receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1NH61 CALCR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 8.9e-13, P = 8.9e-13
 Identities = 32/79 (40%), Positives = 42/79 (53%)

Query:    25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
             L+C   +DGW CW+ T AG      CP++   FD    A + C E G WF+HP + + WS
Sbjct:    70 LFCNRTWDGWLCWDDTPAGRITAQNCPDYFPDFDPTERASKYCDETGNWFRHPESNRTWS 129

Query:    85 NYTTCIDI--EDLKVYLFL 101
             NYT C     E LK+   L
Sbjct:   130 NYTLCNSFTSEKLKMAFIL 148

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0004948 "calcitonin receptor activity" evidence=IEA

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0030279 "negative regulation of ossification" evidence=IEA

GO:0030316 "osteoclast differentiation" evidence=IEA

GO:0043488 "regulation of mRNA stability" evidence=IEA

UNIPROTKB|G3X6P6 CALCRL "Calcitonin gene-related peptide type 1 receptor" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:    21 LDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTR 80
             L   +YC   +DGW CWN   AG  +   CP++   FD      + C ++G WF+HP + 
Sbjct:    60 LTEGIYCNRTWDGWLCWNDVAAGTESMQHCPDYFQDFDPSEKVTKICDQDGNWFRHPASN 119

Query:    81 KFWSNYTTC 89
             + W+NYT C
Sbjct:   120 RTWTNYTQC 128

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004948 "calcitonin receptor activity" evidence=IEA

UNIPROTKB|A6QP74 CALCRL "Calcitonin gene-related peptide type 1 receptor" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query:    25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
             +YC   +DGW CWN   AG  +   CP++   FD      + C ++G WF+HP + + W+
Sbjct:    64 IYCNRTWDGWLCWNDVAAGTESMQHCPDYFQDFDPSEKVTKICDQDGNWFRHPASNRTWT 123

Query:    85 NYTTC 89
             NYT C
Sbjct:   124 NYTQC 128

GO:0005886 "plasma membrane" evidence=IDA

GO:0031623 "receptor internalization" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043235 "receptor complex" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004948 "calcitonin receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	158
pfam02793	63	pfam02793, HRM, Hormone receptor domain	8e-21
smart00008	70	smart00008, HormR, Domain present in hormone recep	3e-15

>gnl|CDD|202399 pfam02793, HRM, Hormone receptor domain

 Score = 80.1 bits (198), Expect = 8e-21
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 24 TLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFW 83
           L CP  +DG  CW  T AG T   PCP++   FD    A R C ENGTW +HP      
Sbjct: 1  GLGCPRTWDGILCWPRTPAGTTVEVPCPDYFYDFDPTGNASRNCTENGTWSEHP------ 54

Query: 84 SNYTTCIDI 92
           NY+ C   
Sbjct: 55 PNYSNCTSN 63

This extracellular domain contains four conserved cysteines that probably for disulphide bridges. The domain is found in a variety of hormone receptors. It may be a ligand binding domain. Length = 63

>gnl|CDD|214468 smart00008, HormR, Domain present in hormone receptors

 Score = 66.0 bits (161), Expect = 3e-15
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 23 STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKF 82
          + L CP  +DG  CW  T AG+    PCP +  GF  +  A R C ENG W         
Sbjct: 1  TDLGCPATWDGIICWPQTPAGQLVEVPCPKYFSGFSYKTGASRNCTENGGWSPPF----- 55

Query: 83 WSNYTTCIDIED 94
            NY+ C   + 
Sbjct: 56 -PNYSNCTSNDY 66

Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
KOG4564|consensus	473		99.93
smart00008	70	HormR Domain present in hormone receptors.	99.78
PF02793	66	HRM: Hormone receptor domain; InterPro: IPR001879	99.75
KOG4564|consensus	473		98.8
smart00008	70	HormR Domain present in hormone receptors.	97.73
PF02793	66	HRM: Hormone receptor domain; InterPro: IPR001879	97.58
PHA02831	268	EEV host range protein; Provisional	93.4
PHA02817	225	EEV Host range protein; Provisional	92.82
PHA02639	295	EEV host range protein; Provisional	90.23
KOG4289|consensus	2531		90.21
smart00032	57	CCP Domain abundant in complement control proteins	88.05
cd00033	57	CCP Complement control protein (CCP) modules (aka	87.78
PF00084	56	Sushi: Sushi domain (SCR repeat); InterPro: IPR000	81.95
PHA02927	263	secreted complement-binding protein; Provisional	81.21
PHA02639	295	EEV host range protein; Provisional	81.06

>KOG4564|consensus

Probab=99.93  E-value=4.6e-27  Score=205.23  Aligned_cols=117  Identities=29%  Similarity=0.538  Sum_probs=99.0

Q ss_pred             ccccccccCCCCCCCCCCCcccccccccCCCCCCCceEEecCCccccccc--cccceeeeeCCCCeEEecCCCCcccccc
Q psy15495          9 LTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFD--SRRFALRTCLENGTWFQHPVTRKFWSNY   86 (158)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~--~~~~a~R~C~~dG~W~~~p~t~~~wtnY   86 (158)
                      .|.+.++.+++..+ +.+||++||+++|||+|++|++|.++||+||++|+  .+++|+|+|++||+|..+|.. ++|+||
T Consensus        47 ~c~~~l~~~~~~~~-~~~Cn~twD~~lCWp~t~~G~~v~~~CP~yf~~~~~~~~~~v~R~C~~~G~W~~~~~~-~~W~ny  124 (473)
T KOG4564|consen   47 QCLEELALEPPYSA-GLGCNGTWDGILCWPRTPAGTLVTVPCPDYFPGFSYSTSGNVTRNCTSNGTWSERPPS-RTWTNY  124 (473)
T ss_pred             HHHHHHHhCCCccC-CCCCCCcCCccccCCCCCCCceEEecCccccCCCcccCCCceEeecCCCCccCCCCCc-CCCCCc
Confidence            45556666655533 78999999999999999999999999999999997  789999999999999999888 899999


Q ss_pred             ccccCcchHH-----HHHhhhceecceeeeeeee-----------cceeEeeeCCCC
Q psy15495         87 TTCIDIEDLK-----VYLFLSCCFNGKKNGLIIN-----------LRFALRTCLENG  127 (158)
Q Consensus        87 t~C~~~~~~~-----~~~~~~~ly~gytvgys~~-----------~~~a~k~C~~nG  127 (158)
                      ++|...++.+     ...++..++++|+|||+.+           ..|...+|.||-
T Consensus       125 t~C~~~~~~~~~~~~~~~~~~~~~~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~  181 (473)
T KOG4564|consen  125 TACGKNEEEEERQLDREYFLELLKILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNY  181 (473)
T ss_pred             hhccCcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHH
Confidence            9999886543     3357777889999999888           246788898875

>smart00008 HormR Domain present in hormone receptors

Probab=99.78  E-value=1e-19  Score=121.98  Aligned_cols=65  Identities=38%  Similarity=0.851  Sum_probs=56.9

Q ss_pred             CCCCcccccccccCCCCCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcch
Q psy15495         24 TLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIED   94 (158)
Q Consensus        24 ~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~   94 (158)
                      +.+|+++||+++|||+|++|++|.++||.++.+++....|+|+|+.+|.|..++      +||+.|.....
T Consensus         2 ~~~C~~~wD~~~CWp~t~~G~~~~~~CP~~~~g~~~~~~a~R~C~~~G~W~~~~------~ny~~C~~~~~   66 (70)
T smart00008        2 DLGCPATWDGIICWPQTPAGQLVEVPCPDYFSGFSYKTGASRNCTENGGWSPPF------PNYSNCTSNDY   66 (70)
T ss_pred             CCCCccccccccCCCCCCCCCEEEecCCCcccCcCCCCCEEEEcCCCCCCccCC------CCHhhccCCcc
Confidence            468999999999999999999999999999999876555999999999898532      79999987643

>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.75  E-value=6.3e-19  Score=116.51  Aligned_cols=63  Identities=51%  Similarity=1.110  Sum_probs=51.8

Q ss_pred             CCCCcccccccccCCCCCCCceEEecCCcccccc--ccccceeeeeCCCCeEEecCCCCccccccccccC
Q psy15495         24 TLYCPTMFDGWSCWNATLAGETARTPCPNFIVGF--DSRRFALRTCLENGTWFQHPVTRKFWSNYTTCID   91 (158)
Q Consensus        24 ~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~--~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~   91 (158)
                      +.+||++||+++|||+|++|++|+++||.++.++  +..++|+|.|+.+|+|..+    .. +||+.|..
T Consensus         1 ~~~C~~~~d~~~cWp~T~~G~~a~~~CP~~~~~~~~~~~g~a~R~C~~nG~W~~~----~~-~nys~C~~   65 (66)
T PF02793_consen    1 GSYCPATWDGWLCWPPTPAGETASQPCPSGFYGFGSDTSGNATRNCTENGTWEEH----RP-PNYSNCVS   65 (66)
T ss_dssp             -SCB--EEESSCEE-SBETTEEEEEECSTTSTCCTSSTTSEEEEEEETTSSBECS----SC-EBHTTCSS
T ss_pred             CCCCChhhCCcCCCCCCCCCCEEEeeCcCCccccccccceeEEEEcCCCCcCCCc----CC-CCcccccC
Confidence            4689999999999999999999999999999755  4578999999999999864    23 89999964

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....

>KOG4564|consensus

Probab=98.80  E-value=2.6e-09  Score=94.20  Aligned_cols=73  Identities=27%  Similarity=0.421  Sum_probs=59.2

Q ss_pred             eeeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccc
Q psy15495         65 RTCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNY  142 (158)
Q Consensus        65 R~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny  142 (158)
                      ..|..  || |.|||.++++-.....|+.+.            .+..   ....++++|.|++||+|..+|.+ ++|+||
T Consensus        62 ~~Cn~twD~-~lCWp~t~~G~~v~~~CP~yf------------~~~~---~~~~~~v~R~C~~~G~W~~~~~~-~~W~ny  124 (473)
T KOG4564|consen   62 LGCNGTWDG-ILCWPRTPAGTLVTVPCPDYF------------PGFS---YSTSGNVTRNCTSNGTWSERPPS-RTWTNY  124 (473)
T ss_pred             CCCCCcCCc-cccCCCCCCCceEEecCcccc------------CCCc---ccCCCceEeecCCCCccCCCCCc-CCCCCc
Confidence            57776  88 899999998877778898874            2221   23567899999999999999999 999999


Q ss_pred             cccccccccccc
Q psy15495        143 TTCIDIEDLKVS  154 (158)
Q Consensus       143 ~~C~~~~~~~~~  154 (158)
                      ++|....+++.+
T Consensus       125 t~C~~~~~~~~~  136 (473)
T KOG4564|consen  125 TACGKNEEEEER  136 (473)
T ss_pred             hhccCcchhhhh
Confidence            999988776554

>smart00008 HormR Domain present in hormone receptors

Probab=97.73  E-value=2.7e-05  Score=51.85  Aligned_cols=59  Identities=27%  Similarity=0.325  Sum_probs=44.0

Q ss_pred             CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCcccccccccccc
Q psy15495         70 NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIE  149 (158)
Q Consensus        70 dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny~~C~~~~  149 (158)
                      || +.+||.+.++-..+..|+...            .|+.     ....|+|+|+.+|.|..++      +||+.|....
T Consensus        10 D~-~~CWp~t~~G~~~~~~CP~~~------------~g~~-----~~~~a~R~C~~~G~W~~~~------~ny~~C~~~~   65 (70)
T smart00008       10 DG-IICWPQTPAGQLVEVPCPDYF------------SGFS-----YKTGASRNCTENGGWSPPF------PNYSNCTSND   65 (70)
T ss_pred             cc-ccCCCCCCCCCEEEecCCCcc------------cCcC-----CCCCEEEEcCCCCCCccCC------CCHhhccCCc
Confidence            66 888888888888888888863            2221     1112999999999998876      8999998765


Q ss_pred             ccc
Q psy15495        150 DLK  152 (158)
Q Consensus       150 ~~~  152 (158)
                      ..+
T Consensus        66 ~~~   68 (70)
T smart00008       66 YNE   68 (70)
T ss_pred             ccc
Confidence            544

>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.58  E-value=2.3e-05  Score=51.31  Aligned_cols=57  Identities=32%  Similarity=0.522  Sum_probs=40.9

Q ss_pred             CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCcccccccccc
Q psy15495         70 NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCID  147 (158)
Q Consensus        70 dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny~~C~~  147 (158)
                      || +.+||.+.++-+....|+....          .+++.     ..++|+|+|..||+|..+    +. .||+.|..
T Consensus         9 d~-~~cWp~T~~G~~a~~~CP~~~~----------~~~~~-----~~g~a~R~C~~nG~W~~~----~~-~nys~C~~   65 (66)
T PF02793_consen    9 DG-WLCWPPTPAGETASQPCPSGFY----------GFGSD-----TSGNATRNCTENGTWEEH----RP-PNYSNCVS   65 (66)
T ss_dssp             ES-SCEE-SBETTEEEEEECSTTST----------CCTSS-----TTSEEEEEEETTSSBECS----SC-EBHTTCSS
T ss_pred             CC-cCCCCCCCCCCEEEeeCcCCcc----------ccccc-----cceeEEEEcCCCCcCCCc----CC-CCcccccC
Confidence            45 6778888877777888887631          01111     246899999999999987    45 89999974

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....

>PHA02831 EEV host range protein; Provisional

Probab=93.40  E-value=0.12  Score=42.93  Aligned_cols=86  Identities=14%  Similarity=0.233  Sum_probs=50.7

Q ss_pred             CCCceEEecCCc-cccccccccceeeeeCCCCeEEecCCCCccccccccccCcch--HHHHHhhhceecceeeeeeeecc
Q psy15495         41 LAGETARTPCPN-FIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIED--LKVYLFLSCCFNGKKNGLIINLR  117 (158)
Q Consensus        41 ~~G~~v~~~CP~-~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~--~~~~~~~~~ly~gytvgys~~~~  117 (158)
                      ..|..|...|-. +..+|.-.|...+.|. +|.|...+  + .- .-..|.....  ......-..++.|-+|.|.|..+
T Consensus        97 ~~Gd~VtYsC~~g~~~GY~LvG~s~~tC~-dG~WS~~~--P-~C-~~i~C~~P~i~NG~i~~~~~~y~~G~~Vty~C~~G  171 (268)
T PHA02831         97 SFGDSVTYACKVNKLEKYSIVGNETVKCI-NKQWVPKY--P-VC-KLIRCKYPALQNGFLNVFEKKFYYGDIVNFKCKKG  171 (268)
T ss_pred             eCCCEEEEECCCCCCCCeeEcCCceeEeC-CCcCCCCC--C-ee-eEeeCCCCCCCCCccccCCCceecCCEEEEEcCCC
Confidence            468889999952 2234444577889995 89896421  0 11 1134644321  11111122334677788888743


Q ss_pred             -----eeEeeeCCCCeEee
Q psy15495        118 -----FALRTCLENGTWFQ  131 (158)
Q Consensus       118 -----~a~k~C~~nG~W~~  131 (158)
                           -+...|..+|+|..
T Consensus       172 Y~L~Gss~~tC~~nG~Wsp  190 (268)
T PHA02831        172 FILLGSSVSTCDINSIWYP  190 (268)
T ss_pred             CEECCCccEEECCCCeECC
Confidence                 35789999999973

>PHA02817 EEV Host range protein; Provisional

Probab=92.82  E-value=0.16  Score=41.26  Aligned_cols=87  Identities=14%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             CCCceEEecCCcccc--ccccccceeeeeCCCCeEEecCCCCccccccccccCcchH--HHH--Hhhhceecceeeeeee
Q psy15495         41 LAGETARTPCPNFIV--GFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDL--KVY--LFLSCCFNGKKNGLII  114 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~--~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~--~~~--~~~~~ly~gytvgys~  114 (158)
                      ..|++|+..|..-..  +|.-.|...+.|..+|+|...+   ..- .-..|......  ...  .....++.+-+|.|.|
T Consensus        43 ~~Gd~Vty~C~~G~~~~gY~L~G~~~i~C~~dG~Ws~~~---P~C-~~v~C~~P~i~NG~v~~~~~~~~y~yg~~Vty~C  118 (225)
T PHA02817         43 NIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKEF---PVC-KIIRCRFPALQNGFVNGIPDSKKFYYESEVSFSC  118 (225)
T ss_pred             eCCCEEEEEeCCCCCCCCEEECCCCeEEECCCCcCCCCC---Cee-eeeECCCCCCcCceeEccccCCceEcCCEEEEEc
Confidence            579999999997322  2344667789999999997321   011 11245433210  000  0012344677788888


Q ss_pred             ecce-----eEeeeCCCCeEee
Q psy15495        115 NLRF-----ALRTCLENGTWFQ  131 (158)
Q Consensus       115 ~~~~-----a~k~C~~nG~W~~  131 (158)
                      ..++     ....|..+|.|..
T Consensus       119 ~~Gy~L~G~~~~tC~~~G~WSp  140 (225)
T PHA02817        119 KPGFVLIGTKYSVCGINSSWIP  140 (225)
T ss_pred             CCCCEEcCCCceEECCCCeECC
Confidence            7543     4688999999975

>PHA02639 EEV host range protein; Provisional

Probab=90.23  E-value=0.54  Score=39.57  Aligned_cols=86  Identities=19%  Similarity=0.301  Sum_probs=49.4

Q ss_pred             CCceEEecCCcc-ccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHH--HH--Hhhhceecceeeeeeeec
Q psy15495         42 AGETARTPCPNF-IVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLK--VY--LFLSCCFNGKKNGLIINL  116 (158)
Q Consensus        42 ~G~~v~~~CP~~-~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~--~~--~~~~~ly~gytvgys~~~  116 (158)
                      .|.+|...|..- -.+|.-.|...+.|..+|+|...+.   .-.. ..|......+  ..  ..-..++.+-+|.|.|..
T Consensus       105 ~G~~V~y~C~~g~~~gY~L~G~~~~~C~~dG~WS~~~P---~C~~-i~C~~P~i~nG~v~~~~~~~~~~yg~~V~fsC~~  180 (295)
T PHA02639        105 VGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSWKPDPP---ICKM-INCRFPALQNGYINGIPSNKKFYYKTRVGFSCKS  180 (295)
T ss_pred             CCCEEEEEeCCCCCCceEECCCCeEEECCCCeECCCCC---eeee-EEeCCCCCCCCceEcccCCCceecCCEEEEEcCC
Confidence            477788888751 0123334677899999999974211   0111 2454321110  00  001233457788888885


Q ss_pred             ce-----eEeeeCCCCeEee
Q psy15495        117 RF-----ALRTCLENGTWFQ  131 (158)
Q Consensus       117 ~~-----a~k~C~~nG~W~~  131 (158)
                      ++     ..+.|..+|+|..
T Consensus       181 GY~L~Gs~~~tC~~nG~Ws~  200 (295)
T PHA02639        181 GFDLVGEKYSTCNINATWFP  200 (295)
T ss_pred             CCeEcCCCcEEECCCCeECC
Confidence            43     3688999999974

>KOG4289|consensus

Probab=90.21  E-value=0.15  Score=51.02  Aligned_cols=45  Identities=36%  Similarity=0.746  Sum_probs=38.4

Q ss_pred             CCcccccccccCCCCCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         26 YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        26 ~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      .||.....-+=||.+.-|..+.+|||.-     ..|.|.|.|.+.|.|..
T Consensus      1857 ~CPk~ie~giwWP~tkfG~~a~~pCP~G-----~~G~AvR~C~e~~gWl~ 1901 (2531)
T KOG4289|consen 1857 KCPKAIEAGIWWPQTKFGSPAAVPCPKG-----SSGLAVRHCDETGGWLP 1901 (2531)
T ss_pred             cCcHHHhhcccccccccCCcccccCCCC-----cchhhhhhhhccCCCCC
Confidence            4677766678899999999999999974     35689999999988986

>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)

Probab=88.05  E-value=0.61  Score=27.80  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=27.6

Q ss_pred             CCCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         39 ATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        39 ~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      ....|+++...|..-   |.-.+...+.|..+|.|..
T Consensus        19 ~~~~g~~~~~~C~~G---y~l~g~~~~~C~~~g~Ws~   52 (57)
T smart00032       19 TYSVGDTVTYSCNPG---YTLIGSSTITCLEDGTWSP   52 (57)
T ss_pred             eecCCCEEEEEcCCC---CEEcCCCeeEECCCCEECC
Confidence            467899999999974   4445668999999999974

The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.

>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

Probab=87.78  E-value=0.69  Score=27.77  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=28.4

Q ss_pred             CCCCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         38 NATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        38 p~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      .....|++|...|..   +|.-.+.....|..+|.|..
T Consensus        17 ~~~~~g~~~~~~C~~---Gy~~~g~~~~~C~~~g~W~~   51 (57)
T cd00033          17 GSYSYGSTVTYSCNE---GYTLVGSSTITCTENGGWSP   51 (57)
T ss_pred             CcccCCCEEEEECCC---CCeEeCCCeeEECCCCeECC
Confidence            457899999999997   44445677999999999974

SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.

>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins

Probab=81.95  E-value=1.1  Score=26.94  Aligned_cols=35  Identities=29%  Similarity=0.524  Sum_probs=27.7

Q ss_pred             CCCCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         38 NATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        38 p~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      ..-..|+++...|-.   +|...+...+.|..+|+|..
T Consensus        17 ~~~~~g~~~~~~C~~---Gy~~~g~~~~~C~~~g~W~~   51 (56)
T PF00084_consen   17 NPYSYGSTVTFSCNP---GYELSGSSTITCQSNGQWSP   51 (56)
T ss_dssp             SSEETTEEEEEEEST---TEEEESSSEEEEETTSEESS
T ss_pred             CCccCCCEEEEcCCC---CCEecCCCEEEECCCCEECC
Confidence            556789999999965   44446669999999999974

The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....

>PHA02927 secreted complement-binding protein; Provisional

Probab=81.21  E-value=1.6  Score=35.88  Aligned_cols=81  Identities=15%  Similarity=0.234  Sum_probs=45.6

Q ss_pred             CCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHH--HHHhh-hceecceeeeeeeecc-
Q psy15495         42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLK--VYLFL-SCCFNGKKNGLIINLR-  117 (158)
Q Consensus        42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~--~~~~~-~~ly~gytvgys~~~~-  117 (158)
                      .|.+|...|-.   +|.-.+...+.|. +|+|...|    .-. -..|......+  ..... ..+..+-+|.|.|... 
T Consensus       168 ~g~~v~y~C~~---Gy~l~G~~~~~C~-~G~Ws~~P----~C~-~v~C~~P~i~ng~~~~~~k~~y~~g~~v~y~C~~Gy  238 (263)
T PHA02927        168 DGSVVTYSCNS---GYSLIGNSGVLCS-GGEWSDPP----TCQ-IVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGY  238 (263)
T ss_pred             CCCEEEEECCC---CCEECCCCeeEEC-CCccCCCC----eEe-EeECcCCCCCCCEEecCCCCccccCCEEEEECCCCC
Confidence            47777788865   3333566788997 78897411    111 12454332111  00000 1223566777877744 


Q ss_pred             ----eeEeeeCCCCeEee
Q psy15495        118 ----FALRTCLENGTWFQ  131 (158)
Q Consensus       118 ----~a~k~C~~nG~W~~  131 (158)
                          .+.+.|..+|+|..
T Consensus       239 ~l~G~~~~~C~~~g~Ws~  256 (263)
T PHA02927        239 KLSGSSSSTCSPGNTWQP  256 (263)
T ss_pred             eEcCCCCeEECCCCEECC
Confidence                34789999999963

>PHA02639 EEV host range protein; Provisional

Probab=81.06  E-value=2.4  Score=35.73  Aligned_cols=86  Identities=16%  Similarity=0.272  Sum_probs=49.7

Q ss_pred             CCCCCceEEecCCccccccccccceeeeeCCC---CeEEecCCCCccccccccccCcchHHHHHh---hhceecceeeee
Q psy15495         39 ATLAGETARTPCPNFIVGFDSRRFALRTCLEN---GTWFQHPVTRKFWSNYTTCIDIEDLKVYLF---LSCCFNGKKNGL  112 (158)
Q Consensus        39 ~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~d---G~W~~~p~t~~~wtnYt~C~~~~~~~~~~~---~~~ly~gytvgy  112 (158)
                      .-..|.+|.-.|-.   ||.-.|...+.|..+   |+|....   ..- ....|......+-...   -..+..|-+|.|
T Consensus        39 ~y~~G~~V~Y~Cn~---GY~L~G~~~~~C~~d~~nG~WS~~~---P~C-~~~~C~~Pp~~~nG~i~~~~~~y~~G~~V~y  111 (295)
T PHA02639         39 KYEIGKLIEYTCNT---DYALIGDRFRTCIKDKNNAIWSNKA---PFC-MLKECNDPPSIINGKIYNKREMYKVGDEIYY  111 (295)
T ss_pred             cccCCCEEEEEeCC---CCEECCCCeEEEeCCCCCCEECCCC---CEE-eeccCcCCCCCCCcEEecCCCceECCCEEEE
Confidence            35679999999976   455566789999864   6897311   011 1234554322110000   011234566667


Q ss_pred             eeec---------ceeEeeeCCCCeEee
Q psy15495        113 IINL---------RFALRTCLENGTWFQ  131 (158)
Q Consensus       113 s~~~---------~~a~k~C~~nG~W~~  131 (158)
                      .|..         +...++|..+|+|..
T Consensus       112 ~C~~g~~~gY~L~G~~~~~C~~dG~WS~  139 (295)
T PHA02639        112 VCNEHKGVQYSLVGNEKITCIQDKSWKP  139 (295)
T ss_pred             EeCCCCCCceEECCCCeEEECCCCeECC
Confidence            6664         234789999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
3n7r_A	115	Crystal Structure Of The Ectodomain Complex Of The		2e-12
3aqf_B	121	Crystal Structure Of The Human CrlrRAMP2 EXTRACELLU		4e-12
3n7p_A	115	Crystal Structure Of The Ectodomain Complex Of The		4e-12
3l2j_A	535	Dimeric Structure Of The Ligand-Free Extracellular		1e-08
3c4m_A	539	Structure Of Human Parathyroid Hormone In Complex W		1e-08
3n93_A	482	Crystal Structure Of Human Crfr2 Alpha Extracellula		6e-07
2jnd_A	119	3d Nmr Structure Of Ecd1 Of Mcrf-R2b In Complex Wit		4e-05
1u34_A	119	3d Nmr Structure Of The First Extracellular Domain		4e-05
2jnc_A	119	Refined 3d Nmr Structure Of Ecd1 Of Mcrf-R2beta At		8e-05
3ehu_A	476	Crystal Structure Of The Extracellular Domain Of Hu		6e-04
3eht_A	476	Crystal Structure Of The Extracellular Domain Of Hu		6e-04
3ehs_A	476	Crystal Structure Of The Extracellular Domain Of Hu		6e-04

>pdb|3N7R|A Chain A, Crystal Structure Of The Ectodomain Complex Of The Cgrp Receptor, A Class-B Gpcr, Reveals The Site Of Drug Antagonism Length = 115

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 14  FMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTW 73
            M   +     +YC   +DGW CWN   AG  +   CP++   FD      + C ++G W
Sbjct: 34  IMQDPIQQAEGVYCNRTWDGWLCWNDVAAGTESMQLCPDYFQDFDPSEKVTKICDQDGNW 93
Query: 74  FQHPVTRKFWSNYTTC 89
           F+HP + + W+NYT C
Sbjct: 94  FRHPASNRTWTNYTQC 109

>pdb|3AQF|B Chain B, Crystal Structure Of The Human CrlrRAMP2 EXTRACELLULAR COMPLEX Length = 121

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25  LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
           +YC   +DGW CWN   AG  +   CP++   FD      + C ++G WF+HP + + W+
Sbjct: 48  VYCNRTWDGWLCWNDVAAGTESXQLCPDYFQDFDPSEKVTKICDQDGNWFRHPASNRTWT 107
Query: 85  NYTTC 89
           NYT C
Sbjct: 108 NYTQC 112

>pdb|3N7P|A Chain A, Crystal Structure Of The Ectodomain Complex Of The Cgrp Receptor, A Class-B Gpcr, Reveals The Site Of Drug Antagonism Length = 115

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25  LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
           +YC   +DGW CWN   AG  +   CP++   FD      + C ++G WF+HP + + W+
Sbjct: 45  VYCNRTWDGWLCWNDVAAGTESXQLCPDYFQDFDPSEKVTKICDQDGNWFRHPASNRTWT 104
Query: 85  NYTTC 89
           NYT C
Sbjct: 105 NYTQC 109

>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain Of Parathyroid Hormone Receptor (Pth1r) Length = 535

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 27  CPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNY 86
           C   +D   CW     GE    PCP++I  F+ +  A R C  NG+W   P   + W+NY
Sbjct: 450 CLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANY 509
Query: 87  TTCI 90
           + C+
Sbjct: 510 SECV 513

>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The Extracellular Domain Of Its G-Protein-Coupled Receptor (Pth1r) Length = 539

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 27  CPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNY 86
           C   +D   CW     GE    PCP++I  F+ +  A R C  NG+W   P   + W+NY
Sbjct: 454 CLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANY 513
Query: 87  TTCI 90
           + C+
Sbjct: 514 SECV 517

>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular Domain In Complex With Urocortin 3 Length = 482

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 26  YCPTMFDG-WSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKF 82
           YC T  D   +CW  + AG     PCP +  G  +++ R A R CLENGTW         
Sbjct: 411 YCNTTLDQIGTCWPRSAAGALVERPCPEYFNGVKYNTTRNAYRECLENGTWASK------ 464
Query: 83  WSNYTTCIDIED 94
             NY+ C  I D
Sbjct: 465 -INYSQCEPILD 475

>pdb|2JND|A Chain A, 3d Nmr Structure Of Ecd1 Of Mcrf-R2b In Complex With Astressin Length = 119

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 26  YCPTMFDG-WSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKF 82
           YC T  D   +CW  +  G     PCP +  G  +++ R A R CLENGTW         
Sbjct: 45  YCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWASR------ 98
Query: 83  WSNYTTCIDIEDLK 96
             NY+ C  I D K
Sbjct: 99  -VNYSHCEPILDDK 111

>pdb|1U34|A Chain A, 3d Nmr Structure Of The First Extracellular Domain Of Crfr- 2beta, A Type B1 G-Protein Coupled Receptor Length = 119

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 26  YCPTMFDG-WSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKF 82
           YC T  D   +CW  +  G     PCP +  G  +++ R A R CLENGTW         
Sbjct: 45  YCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWASR------ 98
Query: 83  WSNYTTCIDIEDLK 96
             NY+ C  I D K
Sbjct: 99  -VNYSHCEPILDDK 111

>pdb|3EHU|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Corticotropin Releasing Factor Receptor Type 1 (crfr1) In Complex With Crf Length = 476

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 35  SCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDI 92
           +CW  + AG+    PCP F  G  +++     R CL NG+W           NY+ C +I
Sbjct: 404 TCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSWAAR-------VNYSECQEI 456

>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Corticotropin Releasing Factor Receptor Type 1 (crfr1) In Complex With Crf Length = 476

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 35  SCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDI 92
           +CW  + AG+    PCP F  G  +++     R CL NG+W           NY+ C +I
Sbjct: 404 TCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSWAAR-------VNYSECQEI 456

>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Corticotropin Releasing Factor Receptor Type 1 (Crfr1) Length = 476

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 35  SCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDI 92
           +CW  + AG+    PCP F  G  +++     R CL NG+W           NY+ C +I
Sbjct: 404 TCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSWAAR-------VNYSECQEI 456

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
3n7s_A	115	Calcitonin gene-related peptide type 1 receptor; G	2e-25
3n7s_A	115	Calcitonin gene-related peptide type 1 receptor; G	2e-06
3c5t_A	122	Glucagon-like peptide 1 receptor; ligand-bound G p	4e-24
2qkh_A	135	Glucose-dependent insulinotropic polypeptide recep	5e-21
1u34_A	119	CRFR2B, corticotropin releasing factor receptor 2;	1e-17
2l27_A	84	Seven transmembrane helix receptor; CRF, ECD1, fam	9e-17
3h3g_A	539	Fusion protein of maltose-binding periplasmic DOM	1e-15
2xdg_A	92	Growth hormone-releasing hormone receptor; signali	2e-15
2x57_A	116	Vasoactive intestinal polypeptide receptor 2; G-pr	3e-15
2jod_A	106	Pituitary adenylate cyclase-activating polypeptide	1e-11
3n94_A	475	Fusion protein of maltose-binding periplasmic Pro	5e-05

>3n7s_A Calcitonin gene-related peptide type 1 receptor; GPCR, class B GPCR, antagonist, olcegepant, telcagepant, MIG membrane protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_A* 3n7p_A* 3aqf_B Length = 115

 Score = 92.9 bits (230), Expect = 2e-25
 Identities = 26/77 (33%), Positives = 39/77 (50%)

Query: 13  NFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGT 72
             M   +     +YC   +DGW CWN   AG  +   CP++   FD      + C ++G 
Sbjct: 33  KIMQDPIQQAEGVYCNRTWDGWLCWNDVAAGTESMQLCPDYFQDFDPSEKVTKICDQDGN 92

Query: 73  WFQHPVTRKFWSNYTTC 89
           WF+HP + + W+NYT C
Sbjct: 93  WFRHPASNRTWTNYTQC 109

>3n7s_A Calcitonin gene-related peptide type 1 receptor; GPCR, class B GPCR, antagonist, olcegepant, telcagepant, MIG membrane protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_A* 3n7p_A* 3aqf_B Length = 115

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 117 RFALRTCLENGTWFQHPVTRKFWSNYTTC 145
               + C ++G WF+HP + + W+NYT C
Sbjct: 81  EKVTKICDQDGNWFRHPASNRTWTNYTQC 109

>3c5t_A Glucagon-like peptide 1 receptor; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} PDB: 3c59_A* 3iol_A* Length = 122

 Score = 89.8 bits (222), Expect = 4e-24
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 12  LNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGF--DSRRFALRTCLE 69
              + +     + L+C   FD ++CW     G      CP ++       +    R C  
Sbjct: 24  QRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTA 83

Query: 70  NGTWFQHPVTRKFWSNYTTCIDIEDLK 96
            G W Q   +   W + + C + +  +
Sbjct: 84  EGLWLQKDNSSLPWRDLSECEESKRGE 110

>2qkh_A Glucose-dependent insulinotropic polypeptide receptor; GPCR, incretin, hormone-GPCR complex, extracellular domain, ligand binding domain, ECD; HET: QKH; 1.90A {Homo sapiens} Length = 135

 Score = 82.5 bits (203), Expect = 5e-21
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 23  STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSR--RFALRTCLENGTWFQHPVTR 80
           S L C   FD + CW+      TAR  CP ++         F LR C  +G W       
Sbjct: 54  SGLACNGSFDMYVCWDYAAPNATARASCPWYLPWHHHVAAGFVLRQCGSDGQW------- 106

Query: 81  KFWSNYTTCIDIEDLKVYL 99
             W ++T C + E  + +L
Sbjct: 107 GLWRDHTQCENPEKNEAFL 125

>1u34_A CRFR2B, corticotropin releasing factor receptor 2; beta sheets and loops, signaling protein; NMR {Mus musculus} SCOP: g.76.1.1 PDB: 2jnd_A* 2jnc_A Length = 119

 Score = 73.3 bits (179), Expect = 1e-17
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 22  DSTLYCPTMFDG-WSCWNATLAGETARTPCPNFI--VGFDSRRFALRTCLENGTWFQHPV 78
               YC T  D   +CW  +  G     PCP +   + +++ R A R CLENGTW     
Sbjct: 41  GPYTYCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTW----- 95

Query: 79  TRKFWSNYTTCIDIEDLK 96
                 NY+ C  I D K
Sbjct: 96  --ASRVNYSHCEPILDDK 111

>2l27_A Seven transmembrane helix receptor; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens} Length = 84

 Score = 69.7 bits (170), Expect = 9e-17
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 10/75 (13%)

Query: 23 STLYCPTMFDG-WSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVT 79
          S L C    D   +CW  + AG+    PCP F  G  +++     R CL NG+W      
Sbjct: 16 SGLQCNASVDLIGTCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSW------ 69

Query: 80 RKFWSNYTTCIDIED 94
               NY+ C +I +
Sbjct: 70 -AARVNYSECQEILN 83

>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* Length = 539

 Score = 71.9 bits (176), Expect = 1e-15
 Identities = 22/67 (32%), Positives = 32/67 (47%)

Query: 26  YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSN 85
            C   +D   CW     GE    PCP++I  F+ +  A R C  NG+W   P   + W+N
Sbjct: 453 PCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWAN 512

Query: 86  YTTCIDI 92
           Y+ C+  
Sbjct: 513 YSECVKF 519

>2xdg_A Growth hormone-releasing hormone receptor; signaling protein, membrane protein; 1.95A {Homo sapiens} Length = 92

 Score = 66.7 bits (162), Expect = 2e-15
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFAL-RTCLENGTWFQHP 77
           +TL CP  +DG  CW    +GE    PCP+F   F S   A+ R C   G     P
Sbjct: 19 QTTLGCPATWDGLLCWPTAGSGEWVTLPCPDFFSHFSSESGAVKRDCTITGWSEPFP 75

>2x57_A Vasoactive intestinal polypeptide receptor 2; G-protein coupled receptor, circadian rhythm, MALE reproduct hormone binding, growth, transducer; 2.10A {Homo sapiens} Length = 116

 Score = 66.7 bits (162), Expect = 3e-15
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 22  DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSR-RFALRTCLENGTWFQHP 77
           +    C  ++D  +CW     GET   PCP     F S+     + C  +G     P
Sbjct: 45  EKHKACSGVWDNITCWRPANVGETVTVPCPKVFSNFYSKAGNISKNCTSDGWSETFP 101

>2jod_A Pituitary adenylate cyclase-activating polypeptide type I receptor; protein/peptide complex, signaling protein; NMR {Homo sapiens} SCOP: g.76.1.1 Length = 106

 Score = 57.1 bits (137), Expect = 1e-11
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDS---RRFALRTCLENGTWFQHP 77
          DS+  CP M+D  +CW     GE     CP     F+         R C E+G     P
Sbjct: 33 DSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDGWSEPFP 91

>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A* Length = 475

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 22  DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGF---DSRRFALRTCLENGTWFQHP 77
           DS+  CP M+D  +CW     GE     CP     F          R C E+G     P
Sbjct: 399 DSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDGWSEPFP 457

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3n7s_A	115	Calcitonin gene-related peptide type 1 receptor; G	99.94
4ers_A	96	GL-R, glucagon receptor; class-B GPCR, FAB, glycos	99.93
3c5t_A	122	Glucagon-like peptide 1 receptor; ligand-bound G p	99.92
2qkh_A	135	Glucose-dependent insulinotropic polypeptide recep	99.89
2l27_A	84	Seven transmembrane helix receptor; CRF, ECD1, fam	99.87
2xdg_A	92	Growth hormone-releasing hormone receptor; signali	99.86
1u34_A	119	CRFR2B, corticotropin releasing factor receptor 2;	99.85
2x57_A	116	Vasoactive intestinal polypeptide receptor 2; G-pr	99.84
2jod_A	106	Pituitary adenylate cyclase-activating polypeptide	99.84
3h3g_A	539	Fusion protein of maltose-binding periplasmic DOM	99.83
3n94_A	475	Fusion protein of maltose-binding periplasmic Pro	99.74
3n7s_A	115	Calcitonin gene-related peptide type 1 receptor; G	99.12
4ers_A	96	GL-R, glucagon receptor; class-B GPCR, FAB, glycos	99.05
3c5t_A	122	Glucagon-like peptide 1 receptor; ligand-bound G p	98.87
3h3g_A	539	Fusion protein of maltose-binding periplasmic DOM	98.71
1u34_A	119	CRFR2B, corticotropin releasing factor receptor 2;	98.26
4dlq_A	381	Latrophilin-1; GAIN domain, includes the GPS motif	98.14
2qkh_A	135	Glucose-dependent insulinotropic polypeptide recep	98.09
2l27_A	84	Seven transmembrane helix receptor; CRF, ECD1, fam	98.0
2xdg_A	92	Growth hormone-releasing hormone receptor; signali	97.34
2x57_A	116	Vasoactive intestinal polypeptide receptor 2; G-pr	97.19
3n94_A	475	Fusion protein of maltose-binding periplasmic Pro	97.07
2jod_A	106	Pituitary adenylate cyclase-activating polypeptide	96.88
4dlo_A	382	Brain-specific angiogenesis inhibitor 3; GAIN doma	96.65
1bl1_A	31	Parathyroid hormone receptor; micelle structures,	93.77
3r62_A	129	H factor 1, complement factor H; immunity, repeati	92.98
1gkn_A	128	Complement receptor type 1; module, SCR, structure	91.55
2qy0_A	159	Complement C1R subcomponent; serine protease, beta	91.48
2a55_A	133	C4B-binding protein; complement, SCR, CCP module,	90.45
3erb_A	223	Complement C2; C3/C5 convertase, short consensus r	89.66
1qub_A	319	Protein (human BETA2-glycoprotein I); short consen	88.17
3gov_A	155	MAsp-1; complement, serine protease, beta barrel,	87.93
1ly2_A	130	CD21, complement receptor type 2; epstein BARR vir	87.67
3erb_A	223	Complement C2; C3/C5 convertase, short consensus r	86.93
3sw0_X	188	H factor 1, complement factor H; innate immune res	86.89
3hrz_D	741	Complement factor B; serine protease, glycosilated	86.81
1gkg_A	136	Complement receptor type 1; module, SCR, structure	85.23
4ayi_A	125	H factor 1, complement factor H; immune system, an	85.16
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	85.05
1qub_A	319	Protein (human BETA2-glycoprotein I); short consen	84.77
3o8e_B	252	Membrane cofactor protein; short consensus repeat,	81.65
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	80.56
1ok3_A	254	CD55, CR, DAF, complement decay-accelerating facto	80.56

>3n7s_A Calcitonin gene-related peptide type 1 receptor; GPCR, class B GPCR, antagonist, olcegepant, telcagepant, MIG membrane protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_A* 3n7p_A* 3aqf_B

Probab=99.94  E-value=1.1e-27  Score=173.78  Aligned_cols=87  Identities=30%  Similarity=0.775  Sum_probs=76.7

Q ss_pred             ccccccccccCCCCCCCCCCCcccccccccCCCCCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCcccccc
Q psy15495          7 SSLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNY   86 (158)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnY   86 (158)
                      ..+|.++++.++++...+++|+++||+++|||++++|++|+++||.||.+|+..++|+|+|+.+|+|..+++++++|+||
T Consensus        27 ~~~C~~~l~~~~~~~~~~~~C~~twD~~~CWp~t~~G~~v~~~CP~~~~~f~~~g~v~R~C~~~G~W~~~~~~~~~w~NY  106 (115)
T 3n7s_A           27 QYECYQKIMQDPIQQAEGVYCNRTWDGWLCWNDVAAGTESMQLCPDYFQDFDPSEKVTKICDQDGNWFRHPASNRTWTNY  106 (115)
T ss_dssp             HHHHHHHHTSCCC---CCSEECCEECSSCEECCEETTCEEEEECCSSSTTCCTTSEEEEEBCTTSCBCBCTTTCSBCCBC
T ss_pred             HHHHHHHHHhCCCCCCCCCCCcCcccccccCCCCCCCCEEEecCchhhcCCCCCCcEEeecCCCCCcccCCCCCCCcCCh
Confidence            34788899888887667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCcc
Q psy15495         87 TTCIDIE   93 (158)
Q Consensus        87 t~C~~~~   93 (158)
                      +.|..+.
T Consensus       107 s~C~~~~  113 (115)
T 3n7s_A          107 TQCNVNT  113 (115)
T ss_dssp             GGGC---
T ss_pred             hhhhhcc
Confidence            9998764

>4ers_A GL-R, glucagon receptor; class-B GPCR, FAB, glycosylation, extra-C immune system; HET: NAG; 2.64A {Homo sapiens}

Probab=99.93  E-value=3.7e-27  Score=166.04  Aligned_cols=81  Identities=27%  Similarity=0.625  Sum_probs=72.8

Q ss_pred             ccccccccccCCCCCCCCCCCcccccccccCCCCCCCceEEecCCcccccc--ccccceeeeeCCCCeEEecCCCCcccc
Q psy15495          7 SSLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGF--DSRRFALRTCLENGTWFQHPVTRKFWS   84 (158)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~--~~~~~a~R~C~~dG~W~~~p~t~~~wt   84 (158)
                      +.+|.++|..++|+  ++++||++||+++|||+|+||++|+++||.||++|  +..++|+|.|+.||+|..+++ +.+|+
T Consensus        13 ~~eC~~~l~~~~~~--~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~~~a~R~C~~~G~W~~~~~-~~~ws   89 (96)
T 4ers_A           13 GDQCHHNLSLLPPP--TELVCNRTFDKYSCWPDTPANTTANISCPWYLPWHHKVQHRFVFKRCGPDGQWVRGPR-GQPWR   89 (96)
T ss_dssp             HHHHHHHHHHSCCC--SSSEECCEECSSCEECCEETTEEEEEECCTTSTTTTTSTTCEEEEEECTTSCBCBCTT-SCBCC
T ss_pred             HHHHHHHHHcCCCC--CCCCCCCccCCcccCCCCCCCCEEECCCChhhCcCccCCccceeeecCCCCeEeCCCC-CCCCc
Confidence            46788988888765  68899999999999999999999999999999988  457999999999999998876 67999


Q ss_pred             cccccc
Q psy15495         85 NYTTCI   90 (158)
Q Consensus        85 nYt~C~   90 (158)
                      ||+.|.
T Consensus        90 nYs~C~   95 (96)
T 4ers_A           90 DASQCQ   95 (96)
T ss_dssp             BCTTTC
T ss_pred             Cccccc
Confidence            999995

>3c5t_A Glucagon-like peptide 1 receptor; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} PDB: 3c59_A* 3iol_A*

Probab=99.92  E-value=8.4e-26  Score=165.51  Aligned_cols=86  Identities=19%  Similarity=0.510  Sum_probs=77.3

Q ss_pred             cccccccccCCCCCCCCCCCcccccccccCCCCCCCceEEecCCccccccc--cccceeeeeCCCCeEEecCCCCccccc
Q psy15495          8 SLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFD--SRRFALRTCLENGTWFQHPVTRKFWSN   85 (158)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~--~~~~a~R~C~~dG~W~~~p~t~~~wtn   85 (158)
                      .+|.++|..++++ .++++|+++||+++|||++++|++|.++||+||.+|+  ..++|+|+|++||+|..+++.+..|+|
T Consensus        21 ~~C~~~l~~~~~~-~~g~~C~~twD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~~~~~R~C~~~G~W~~~~~~~~~w~n   99 (122)
T 3c5t_A           21 RQCQRSLTEDPPP-ATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTAEGLWLQKDNSSLPWRD   99 (122)
T ss_dssp             HHHHHHHHHSCCC-SSSCCBCCEECSSCEECCBCTTEEEEEECCTTSTTGGGCTTCEEEEEECTTSSBCCSSTTCCCCCB
T ss_pred             HHHHHHHHhCCCC-CCCCCCCcccCcccccCCCCCCcEEEeeCcchhhCccccccceEecCCCCCCccccCCCCCCCCCC
Confidence            4677888777665 5678999999999999999999999999999999998  689999999999999999988889999


Q ss_pred             cccccCcch
Q psy15495         86 YTTCIDIED   94 (158)
Q Consensus        86 Yt~C~~~~~   94 (158)
                      |+.|....+
T Consensus       100 y~~C~~~~~  108 (122)
T 3c5t_A          100 LSECEESKR  108 (122)
T ss_dssp             CGGGCSCCC
T ss_pred             HHHhcCCCC
Confidence            999987654

>2qkh_A Glucose-dependent insulinotropic polypeptide receptor; GPCR, incretin, hormone-GPCR complex, extracellular domain, ligand binding domain, ECD; HET: QKH; 1.90A {Homo sapiens}

Probab=99.89  E-value=1.6e-24  Score=161.14  Aligned_cols=89  Identities=26%  Similarity=0.523  Sum_probs=69.0

Q ss_pred             cccccccccCCCCCCCCCCCcccccccccCCCCCCCceEEecCCccccccc--cccceeeeeCCCCeEEecCCCCccccc
Q psy15495          8 SLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFD--SRRFALRTCLENGTWFQHPVTRKFWSN   85 (158)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~--~~~~a~R~C~~dG~W~~~p~t~~~wtn   85 (158)
                      .+|.+.|..+++.  .+.+|+++||+++|||+|++|++|.++||+||.+|+  ..++|+|+|++||+|.       .|++
T Consensus        41 ~~C~~~l~~~~~~--~g~~C~~twD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~g~vsR~C~~dG~W~-------~~~n  111 (135)
T 2qkh_A           41 RECQETLAAAEPP--SGLACNGSFDMYVCWDYAAPNATARASCPWYLPWHHHVAAGFVLRQCGSDGQWG-------LWRD  111 (135)
T ss_dssp             HHHHHHHHHCCCC--SSCCBCCEECSSCEECCBCTTEEEEEECCTTSTTHHHHTTCEEEEEECTTSCBC-------SCCB
T ss_pred             HHHHHHHHhCCCC--CCCCCCcccCccccCCCCCCCCEEEecCchhhcCcccCCCceEeccCCCCCCCC-------CCCC
Confidence            4577777777655  378999999999999999999999999999999997  6899999999999997       6899


Q ss_pred             cccccCcchHHHHHhhhcee
Q psy15495         86 YTTCIDIEDLKVYLFLSCCF  105 (158)
Q Consensus        86 Yt~C~~~~~~~~~~~~~~ly  105 (158)
                      |+.|...++.+.+..+..||
T Consensus       112 ys~C~~~~~~~~~~~~~~~y  131 (135)
T 2qkh_A          112 HTQCENPEKNEAFLDQRLIL  131 (135)
T ss_dssp             CGGGSCCC------------
T ss_pred             cccccCcchHHHHHHHHHHH
Confidence            99998876555554444444

>2l27_A Seven transmembrane helix receptor; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}

Probab=99.87  E-value=4e-23  Score=142.23  Aligned_cols=75  Identities=31%  Similarity=0.645  Sum_probs=65.7

Q ss_pred             ccccccccCCCCCCCCCCCccccccc-ccCCCCCCCceEEecCCccccccc--cccceeeeeCCCCeEEecCCCCccccc
Q psy15495          9 LTTLNFMFQTLSLDSTLYCPTMFDGW-SCWNATLAGETARTPCPNFIVGFD--SRRFALRTCLENGTWFQHPVTRKFWSN   85 (158)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~C~~~wD~~-~CWp~t~~G~~v~~~CP~~~~~~~--~~~~a~R~C~~dG~W~~~p~t~~~wtn   85 (158)
                      .| ++|+.+++.  ++++|+++||++ +|||++++|++|.++||.||.+|+  ..++|+|+|++||+|..       |.|
T Consensus         5 ~C-~~~~~~~~~--~~~~C~~~wD~~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~~~~~R~C~~~G~W~~-------~~n   74 (84)
T 2l27_A            5 HC-ESLSLASNI--SGLQCNASVDLIGTCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSWAA-------RVN   74 (84)
T ss_dssp             HH-HHTTCCCCC--CSCBCCCSCSSSSCCCCCCBSSBCCBCCCCSSBTTBCCCCSSCCBCCEETTTEECS-------CCC
T ss_pred             HH-HHHHhCCCC--CCCCCCccccCccccCCCCCCCCEEEecCchhhcCcccCcCCceecCCCCCCcCCC-------cCC
Confidence            45 788877543  688999999999 999999999999999999999976  57999999999999973       689


Q ss_pred             cccccCcc
Q psy15495         86 YTTCIDIE   93 (158)
Q Consensus        86 Yt~C~~~~   93 (158)
                      |+.|....
T Consensus        75 y~~C~~~~   82 (84)
T 2l27_A           75 YSECQEIL   82 (84)
T ss_dssp             GGGSCCCC
T ss_pred             HHHHhhhc
Confidence            99997653

>2xdg_A Growth hormone-releasing hormone receptor; signaling protein, membrane protein; 1.95A {Homo sapiens}

Probab=99.86  E-value=9.9e-23  Score=142.45  Aligned_cols=78  Identities=27%  Similarity=0.527  Sum_probs=66.8

Q ss_pred             ccccccccccCCCCCCCCCCCcccccccccCCCCCCCceEEecCCccccccc-cccceeeeeCCCCeEEecCCCCccccc
Q psy15495          7 SSLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFD-SRRFALRTCLENGTWFQHPVTRKFWSN   85 (158)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~-~~~~a~R~C~~dG~W~~~p~t~~~wtn   85 (158)
                      ..+|.++|..+++   ++.+|+++||+++|||++++|++|.++||.||.+|+ ..++|+|+|+.+| |.      ..|++
T Consensus         7 ~~~C~~~l~~~~~---~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~~v~R~C~~~G-W~------~~~~~   76 (92)
T 2xdg_A            7 ESACLQAAEEMPQ---TTLGCPATWDGLLCWPTAGSGEWVTLPCPDFFSHFSSESGAVKRDCTITG-WS------EPFPP   76 (92)
T ss_dssp             HHHHHHHHTTSCS---SCSSBCCEECSSCEECCBCTTEEEEECCCGGGGGTCSSCCCEEEEEETTE-EC------CCBSC
T ss_pred             HHHHHHHHHhCCC---CCCCCCcccCcccccCCCCCCCEEEecCcchhccccccCCeEecCCCccc-CC------CCcCC
Confidence            3568888887764   478999999999999999999999999999999987 5799999999999 84      36889


Q ss_pred             cccccCcch
Q psy15495         86 YTTCIDIED   94 (158)
Q Consensus        86 Yt~C~~~~~   94 (158)
                      |..|..+.+
T Consensus        77 y~~~C~~~~   85 (92)
T 2xdg_A           77 YPVACPVPL   85 (92)
T ss_dssp             HHHHSCCCG
T ss_pred             cccccccCC
Confidence            977766543

>1u34_A CRFR2B, corticotropin releasing factor receptor 2; beta sheets and loops, signaling protein; NMR {Mus musculus} SCOP: g.76.1.1 PDB: 2jnd_A* 2jnc_A

Probab=99.85  E-value=4.4e-22  Score=144.84  Aligned_cols=80  Identities=33%  Similarity=0.658  Sum_probs=66.0

Q ss_pred             CccccccccccCCCCCCCCCCCccccccc-ccCCCCCCCceEEecCCccccc--cccccceeeeeCCCCeEEecCCCCcc
Q psy15495          6 TSSLTTLNFMFQTLSLDSTLYCPTMFDGW-SCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKF   82 (158)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~C~~~wD~~-~CWp~t~~G~~v~~~CP~~~~~--~~~~~~a~R~C~~dG~W~~~p~t~~~   82 (158)
                      ....|.+.+  +++......+|+++||++ +|||++++|++|.++||+||.+  |+..++|+|+|+.||+|.       .
T Consensus        27 e~~~C~e~l--~~~~~g~~~~C~~twD~i~~CWp~t~~G~~v~~pCP~~~~~~~~~~~g~vsR~C~~nG~W~-------~   97 (119)
T 1u34_A           27 LEQYCHRTT--IGNFSGPYTYCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWA-------S   97 (119)
T ss_dssp             TTSCCSCCC--CSSSCCCSSCCCCBCCSSSCCBCCCCTTCBCCCCSSCTTSSSCCCCCCCCCCBCCTTSCCC-------S
T ss_pred             HHHHHHHHh--cCCccCCCCCCCccccChhhcCCCCCCCCEEEecCccccCCcccCCCCeeecCCCCCCcCC-------C
Confidence            355677777  333311123499999999 9999999999999999999999  677899999999999996       5


Q ss_pred             ccccccccCcch
Q psy15495         83 WSNYTTCIDIED   94 (158)
Q Consensus        83 wtnYt~C~~~~~   94 (158)
                      |.||+.|....+
T Consensus        98 ~~nys~C~~~~~  109 (119)
T 1u34_A           98 RVNYSHCEPILD  109 (119)
T ss_dssp             CCCCCSSSCCSS
T ss_pred             CCChhHhcCccc
Confidence            889999988754

>2x57_A Vasoactive intestinal polypeptide receptor 2; G-protein coupled receptor, circadian rhythm, MALE reproduct hormone binding, growth, transducer; 2.10A {Homo sapiens}

Probab=99.84  E-value=3.7e-22  Score=144.71  Aligned_cols=75  Identities=21%  Similarity=0.508  Sum_probs=63.8

Q ss_pred             cccccccccCCCCCCCCCCCcccccccccCCCCCCCceEEecCCccccccc-cccceeeeeCCCCeEEecCCCCcccccc
Q psy15495          8 SLTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFD-SRRFALRTCLENGTWFQHPVTRKFWSNY   86 (158)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~-~~~~a~R~C~~dG~W~~~p~t~~~wtnY   86 (158)
                      .+|.+++..++++   +.+|+++||+++|||++++|++|.++||+||.+|+ ..++|+|+|+++| |.      ..|++|
T Consensus        34 ~~C~~~l~~~~~~---~~~C~~twD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~g~v~R~C~~~G-Ws------~~~p~y  103 (116)
T 2x57_A           34 TKCAELLRSQTEK---HKACSGVWDNITCWRPANVGETVTVPCPKVFSNFYSKAGNISKNCTSDG-WS------ETFPDF  103 (116)
T ss_dssp             HHHHHHHHHTTTS---CCSBCCEEETTEEECCBCTTCEEEEECCGGGGGGBSSCCEEEEEEETTE-EC------CCBSCH
T ss_pred             HHHHHHHHhCCCC---CCCCCcccCcccccCCCCCCCEEEecCcccccCccCCCCeEEeeCCccc-CC------CCCCCc
Confidence            4678888877654   67899999999999999999999999999999998 6899999999999 95      368886


Q ss_pred             ccccCc
Q psy15495         87 TTCIDI   92 (158)
Q Consensus        87 t~C~~~   92 (158)
                      ..++.+
T Consensus       104 ~~~C~~  109 (116)
T 2x57_A          104 VDACGY  109 (116)
T ss_dssp             HHHHTB
T ss_pred             hhhcCC
Confidence            544343

>2jod_A Pituitary adenylate cyclase-activating polypeptide type I receptor; protein/peptide complex, signaling protein; NMR {Homo sapiens} SCOP: g.76.1.1

Probab=99.84  E-value=4.3e-22  Score=142.53  Aligned_cols=80  Identities=24%  Similarity=0.534  Sum_probs=66.1

Q ss_pred             ccccccccccCCCC---CCCCCCCcccccccccCCCCCCCceEEecCCcccccccc---ccceeeeeCCCCeEEecCCCC
Q psy15495          7 SSLTTLNFMFQTLS---LDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDS---RRFALRTCLENGTWFQHPVTR   80 (158)
Q Consensus         7 ~~~~~~~~~~~~~~---~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~---~~~a~R~C~~dG~W~~~p~t~   80 (158)
                      ..+|.+++..+++.   ..++.+|+++||+++|||++++|++|.++||.||.+|+.   .++|+|+|+++| |.      
T Consensus        15 ~~~C~~~~~~~~~~~~~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~~g~v~R~C~~~G-Ws------   87 (106)
T 2jod_A           15 QAMCLEKIQRANELMGFNDSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDG-WS------   87 (106)
T ss_dssp             HHHHHHHHHHHHHHCSCTTTSCBCCCEECSSCEECCCBTTCCEEECCSCSSCCCSCCSCCSCEEECBCSSC-BC------
T ss_pred             HHHHHHHHHhCCCccccCcCCCCCCcccCcccccCCCCCCCEEEecCcchhcCCCCcCcCCeEEecCCccc-CC------
Confidence            34678888777653   345889999999999999999999999999999999976   469999999999 95      


Q ss_pred             ccccccccccCcc
Q psy15495         81 KFWSNYTTCIDIE   93 (158)
Q Consensus        81 ~~wtnYt~C~~~~   93 (158)
                      ..|++|..|+.+.
T Consensus        88 ~~~~~y~~~C~~~  100 (106)
T 2jod_A           88 EPFPHYFDACGFD  100 (106)
T ss_dssp             CCSSCCSSCSCSS
T ss_pred             CCCCCchhhhCCC
Confidence            3678876665543

>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*

Probab=99.83  E-value=1.6e-21  Score=170.57  Aligned_cols=76  Identities=30%  Similarity=0.687  Sum_probs=69.8

Q ss_pred             CCCCCCCCcccccccccCCCCCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchH
Q psy15495         20 SLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDL   95 (158)
Q Consensus        20 ~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~   95 (158)
                      ++.++++|+++||+++|||++++|++|+++||+||.+|+..++|+|+|+.+|+|..+|.++++|+||+.|..+.+.
T Consensus       447 ~~~~~~~c~~~~d~~~cw~~~~~g~~~~~~Cp~~~~~~~~~~~~~r~C~~~g~w~~~~~~~~~~~~y~~c~~~~~~  522 (539)
T 3h3g_A          447 SRYRGRPCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANYSECVKFLTN  522 (539)
T ss_dssp             -CTTCCCBCCEECSSCEECCBCTTCEEEEECCTTCTTSCTTCEEEEEBCTTSCBCBCTTSSSBCCBCTTTTTTCC-
T ss_pred             CCCCCCCCCcCcCCcCcCCCCCCCCEEEeeCcchhccCCcCCceEeecCCCcccccCCCCCCCCCChhhccCCCCc
Confidence            4446789999999999999999999999999999999999999999999999999999999999999999987543

>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*

Probab=99.74  E-value=1.5e-19  Score=155.01  Aligned_cols=80  Identities=24%  Similarity=0.544  Sum_probs=67.0

Q ss_pred             ccccccccCCC---CCCCCCCCcccccccccCCCCCCCceEEecCCccccccccc---cceeeeeCCCCeEEecCCCCcc
Q psy15495          9 LTTLNFMFQTL---SLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSR---RFALRTCLENGTWFQHPVTRKF   82 (158)
Q Consensus         9 ~~~~~~~~~~~---~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~---~~a~R~C~~dG~W~~~p~t~~~   82 (158)
                      +|.+.+..+.+   ....+++|+++||+++|||++++|++|+++||.+|.+|+..   ++|+|+|+.+| |..      .
T Consensus       383 ~C~~~~~~~~~~~~~~~~~~~c~~~~d~~~cw~~~~~g~~~~~~cp~~~~~~~~~~~~~~~~r~c~~~g-w~~------~  455 (475)
T 3n94_A          383 MCLEKIQRANELMGFNDSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDG-WSE------P  455 (475)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSBCCEECSSCEECCBCTTCEEEEECCGGGGGTCTTGGGCEEEEEEETTE-ECC------C
T ss_pred             HHHHHHHhcccccCCCCCCCCCCCcccccccCCCCCCCCeEecccchhhcCcCcCCCCCceeeecCccc-CCC------C
Confidence            45555555543   23457899999999999999999999999999999999763   89999999999 953      7


Q ss_pred             ccccccccCcchH
Q psy15495         83 WSNYTTCIDIEDL   95 (158)
Q Consensus        83 wtnYt~C~~~~~~   95 (158)
                      |++|+.|+.+++.
T Consensus       456 ~~~~~~~~~~~~~  468 (475)
T 3n94_A          456 FPHYFDACGFDEY  468 (475)
T ss_dssp             BSCHHHHHSSCSC
T ss_pred             CCCHHHHhCCCCC
Confidence            8999999988653

>3n7s_A Calcitonin gene-related peptide type 1 receptor; GPCR, class B GPCR, antagonist, olcegepant, telcagepant, MIG membrane protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_A* 3n7p_A* 3aqf_B

Probab=99.12  E-value=2.2e-11  Score=87.90  Aligned_cols=68  Identities=24%  Similarity=0.516  Sum_probs=50.5

Q ss_pred             eeeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccc
Q psy15495         65 RTCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNY  142 (158)
Q Consensus        65 R~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny  142 (158)
                      ..|..  || |.+||.+.++-+....|+.+.            .++.     +.++|+|.|+.+|+|..||++|++|+||
T Consensus        45 ~~C~~twD~-~~CWp~t~~G~~v~~~CP~~~------------~~f~-----~~g~v~R~C~~~G~W~~~~~~~~~w~NY  106 (115)
T 3n7s_A           45 VYCNRTWDG-WLCWNDVAAGTESMQLCPDYF------------QDFD-----PSEKVTKICDQDGNWFRHPASNRTWTNY  106 (115)
T ss_dssp             SEECCEECS-SCEECCEETTCEEEEECCSSS------------TTCC-----TTSEEEEEBCTTSCBCBCTTTCSBCCBC
T ss_pred             CCCcCcccc-cccCCCCCCCCEEEecCchhh------------cCCC-----CCCcEEeecCCCCCcccCCCCCCCcCCh
Confidence            34555  66 778888777766777787763            2332     3578999999999999999999999999


Q ss_pred             cccccccc
Q psy15495        143 TTCIDIED  150 (158)
Q Consensus       143 ~~C~~~~~  150 (158)
                      ++|..+.+
T Consensus       107 s~C~~~~~  114 (115)
T 3n7s_A          107 TQCNVNTH  114 (115)
T ss_dssp             GGGC----
T ss_pred             hhhhhccC
Confidence            99987654

>4ers_A GL-R, glucagon receptor; class-B GPCR, FAB, glycosylation, extra-C immune system; HET: NAG; 2.64A {Homo sapiens}

Probab=99.05  E-value=4.7e-11  Score=83.65  Aligned_cols=65  Identities=18%  Similarity=0.389  Sum_probs=50.6

Q ss_pred             eeeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccc
Q psy15495         65 RTCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNY  142 (158)
Q Consensus        65 R~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny  142 (158)
                      ..|..  || |.+||.+.++-+....|+.+.            .++.   .++.++|+|.|+.||+|++||+ +++|+||
T Consensus        29 ~~C~~~wD~-~~CWp~t~~G~~v~~~CP~~~------------~~~~---~~~~~~a~R~C~~~G~W~~~~~-~~~wsnY   91 (96)
T 4ers_A           29 LVCNRTFDK-YSCWPDTPANTTANISCPWYL------------PWHH---KVQHRFVFKRCGPDGQWVRGPR-GQPWRDA   91 (96)
T ss_dssp             SEECCEECS-SCEECCEETTEEEEEECCTTS------------TTTT---TSTTCEEEEEECTTSCBCBCTT-SCBCCBC
T ss_pred             CCCCCccCC-cccCCCCCCCCEEECCCChhh------------CcCc---cCCccceeeecCCCCeEeCCCC-CCCCcCc
Confidence            45666  77 888998888877888888763            2221   1245789999999999999986 7899999


Q ss_pred             cccc
Q psy15495        143 TTCI  146 (158)
Q Consensus       143 ~~C~  146 (158)
                      ++|.
T Consensus        92 s~C~   95 (96)
T 4ers_A           92 SQCQ   95 (96)
T ss_dssp             TTTC
T ss_pred             cccc
Confidence            9995

>3c5t_A Glucagon-like peptide 1 receptor; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} PDB: 3c59_A* 3iol_A*

Probab=98.87  E-value=9.3e-10  Score=80.10  Aligned_cols=69  Identities=14%  Similarity=0.237  Sum_probs=53.9

Q ss_pred             eeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCcccccc
Q psy15495         66 TCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYT  143 (158)
Q Consensus        66 ~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny~  143 (158)
                      .|..  || |.+||.+.++-.....|+.+.            .++.   ....++|+|.|+.+|+|++||+++++|+||+
T Consensus        38 ~C~~twD~-~~CWp~t~~G~~v~~~CP~~~------------~~~~---~~~~~~~~R~C~~~G~W~~~~~~~~~w~ny~  101 (122)
T 3c5t_A           38 FCNRTFDE-YACWPDGEPGSFVNVSCPWYL------------PWAS---SVPQGHVYRFCTAEGLWLQKDNSSLPWRDLS  101 (122)
T ss_dssp             CBCCEECS-SCEECCBCTTEEEEEECCTTS------------TTGG---GCTTCEEEEEECTTSSBCCSSTTCCCCCBCG
T ss_pred             CCCcccCc-ccccCCCCCCcEEEeeCcchh------------hCcc---ccccceEecCCCCCCccccCCCCCCCCCCHH
Confidence            3555  77 888998888877778898874            2221   0135689999999999999999999999999


Q ss_pred             ccccccc
Q psy15495        144 TCIDIED  150 (158)
Q Consensus       144 ~C~~~~~  150 (158)
                      +|....+
T Consensus       102 ~C~~~~~  108 (122)
T 3c5t_A          102 ECEESKR  108 (122)
T ss_dssp             GGCSCCC
T ss_pred             HhcCCCC
Confidence            9976654

>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*

Probab=98.71  E-value=5.9e-09  Score=90.91  Aligned_cols=68  Identities=25%  Similarity=0.445  Sum_probs=53.8

Q ss_pred             eeeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccc
Q psy15495         65 RTCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNY  142 (158)
Q Consensus        65 R~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny  142 (158)
                      -.|..  || |.|||.+..+-+....|+.+.            .++     .+.++++|.|+++|+|..+|.++++|+||
T Consensus       452 ~~c~~~~d~-~~cw~~~~~g~~~~~~Cp~~~------------~~~-----~~~~~~~r~C~~~g~w~~~~~~~~~~~~y  513 (539)
T 3h3g_A          452 RPCLPEWDH-ILCWPLGAPGEVVAVPCPDYI------------YDF-----NHKGHAYRRCDRNGSWELVPGHNRTWANY  513 (539)
T ss_dssp             CCBCCEECS-SCEECCBCTTCEEEEECCTTC------------TTS-----CTTCEEEEEBCTTSCBCBCTTSSSBCCBC
T ss_pred             CCCCcCcCC-cCcCCCCCCCCEEEeeCcchh------------ccC-----CcCCceEeecCCCcccccCCCCCCCCCCh
Confidence            35655  77 788888887777777887763            222     14578999999999999999999999999


Q ss_pred             cccccccc
Q psy15495        143 TTCIDIED  150 (158)
Q Consensus       143 ~~C~~~~~  150 (158)
                      ++|..+.+
T Consensus       514 ~~c~~~~~  521 (539)
T 3h3g_A          514 SECVKFLT  521 (539)
T ss_dssp             TTTTTTCC
T ss_pred             hhccCCCC
Confidence            99987654

>1u34_A CRFR2B, corticotropin releasing factor receptor 2; beta sheets and loops, signaling protein; NMR {Mus musculus} SCOP: g.76.1.1 PDB: 2jnd_A* 2jnc_A

Probab=98.26  E-value=4.2e-07  Score=65.79  Aligned_cols=66  Identities=33%  Similarity=0.408  Sum_probs=51.0

Q ss_pred             eCC--CCeE-EecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCcccccc
Q psy15495         67 CLE--NGTW-FQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYT  143 (158)
Q Consensus        67 C~~--dG~W-~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny~  143 (158)
                      |..  || | .+||.+.++-.....|+.+.            .++.   .++.++++|.|+.||+|       ..|+||+
T Consensus        46 C~~twD~-i~~CWp~t~~G~~v~~pCP~~~------------~~~~---~~~~g~vsR~C~~nG~W-------~~~~nys  102 (119)
T 1u34_A           46 CNTTLDQ-IGTCWPQSAPGALVERPCPEYF------------NGIK---YNTTRNAYRECLENGTW-------ASRVNYS  102 (119)
T ss_dssp             CCCBCCS-SSCCBCCCCTTCBCCCCSSCTT------------SSSC---CCCCCCCCCBCCTTSCC-------CSCCCCC
T ss_pred             CCccccC-hhhcCCCCCCCCEEEecCcccc------------CCcc---cCCCCeeecCCCCCCcC-------CCCCChh
Confidence            444  78 9 99999988888888999874            2310   12457899999999999       3599999


Q ss_pred             cccccccccccc
Q psy15495        144 TCIDIEDLKVST  155 (158)
Q Consensus       144 ~C~~~~~~~~~~  155 (158)
                      +|....+++.+.
T Consensus       103 ~C~~~~~~~~~~  114 (119)
T 1u34_A          103 HCEPILDDKQRK  114 (119)
T ss_dssp             SSSCCSSCCCCC
T ss_pred             HhcCcccccccc
Confidence            999888877554

>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding domain, autoproteolysis, A-latrotoxin, extracellular domain; HET: NAG; 1.85A {Rattus norvegicus}

Probab=98.14  E-value=8.2e-07  Score=75.09  Aligned_cols=58  Identities=28%  Similarity=0.540  Sum_probs=48.4

Q ss_pred             CCCCCcccccccccCCCCCCCceEEecCCccccccccccceeeeeCC-CCeEEecCCCCccccccccccC
Q psy15495         23 STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLE-NGTWFQHPVTRKFWSNYTTCID   91 (158)
Q Consensus        23 ~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~-dG~W~~~p~t~~~wtnYt~C~~   91 (158)
                      ...+|+.++++..+||.|++|+++.++||.     ...|.|+|.|.. +|.|..      ..+++..|..
T Consensus        20 ~~~~C~~~~~~~~~Wp~t~~G~~a~~~CP~-----~~~g~a~r~C~~~~g~W~~------~~p~~~~C~s   78 (381)
T 4dlq_A           20 PELFCEPREVRRVQWPATQQGMLVERPCPK-----GTRGIASFQCLPALGLWNP------RGPDLSNCTS   78 (381)
T ss_dssp             CCCEECCEEETTEEECCEETTCEEEEECCT-----TCBSEEEEEBCTTTCSBCT------TCCBCTTCBC
T ss_pred             ccCCCChhhcCceEECCCCCCCEEeCcCcc-----CCCceEEEEecCCCCEeec------CCCchhhcCc
Confidence            357999999999999999999999999997     245899999985 687862      2467888874

>2qkh_A Glucose-dependent insulinotropic polypeptide receptor; GPCR, incretin, hormone-GPCR complex, extracellular domain, ligand binding domain, ECD; HET: QKH; 1.90A {Homo sapiens}

Probab=98.09  E-value=1.1e-06  Score=64.81  Aligned_cols=63  Identities=19%  Similarity=0.342  Sum_probs=45.3

Q ss_pred             eeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCcccccc
Q psy15495         66 TCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYT  143 (158)
Q Consensus        66 ~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny~  143 (158)
                      .|..  || |.+||.+.++-.....|+.+..            ++.   ..+.++++|.|++||+|.       +|+||+
T Consensus        57 ~C~~twD~-~~CWp~t~~G~~v~~~CP~~~~------------~~~---~~~~g~vsR~C~~dG~W~-------~~~nys  113 (135)
T 2qkh_A           57 ACNGSFDM-YVCWDYAAPNATARASCPWYLP------------WHH---HVAAGFVLRQCGSDGQWG-------LWRDHT  113 (135)
T ss_dssp             CBCCEECS-SCEECCBCTTEEEEEECCTTST------------THH---HHTTCEEEEEECTTSCBC-------SCCBCG
T ss_pred             CCCcccCc-cccCCCCCCCCEEEecCchhhc------------Ccc---cCCCceEeccCCCCCCCC-------CCCCcc
Confidence            4555  77 7888888888777778888742            110   012467999999999996       899999


Q ss_pred             cccccccc
Q psy15495        144 TCIDIEDL  151 (158)
Q Consensus       144 ~C~~~~~~  151 (158)
                      +|....+.
T Consensus       114 ~C~~~~~~  121 (135)
T 2qkh_A          114 QCENPEKN  121 (135)
T ss_dssp             GGSCCC--
T ss_pred             cccCcchH
Confidence            99776543

>2l27_A Seven transmembrane helix receptor; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}

Probab=98.00  E-value=3.1e-06  Score=57.61  Aligned_cols=58  Identities=22%  Similarity=0.335  Sum_probs=44.1

Q ss_pred             CCeE-EecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccccccccc
Q psy15495         70 NGTW-FQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDI  148 (158)
Q Consensus        70 dG~W-~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny~~C~~~  148 (158)
                      || | .+||.+.++-.....|+.+.            .++.   ....++++|.|+.+|+|..       |+||++|..+
T Consensus        25 D~-~~~CWp~t~~G~~v~~~CP~~~------------~~~~---~~~~~~~~R~C~~~G~W~~-------~~ny~~C~~~   81 (84)
T 2l27_A           25 DL-IGTCWPRSPAGQLVVRPCPAFF------------YGVR---YNTTNNGYRECLANGSWAA-------RVNYSECQEI   81 (84)
T ss_dssp             SS-SSCCCCCCBSSBCCBCCCCSSB------------TTBC---CCCSSCCBCCEETTTEECS-------CCCGGGSCCC
T ss_pred             cC-ccccCCCCCCCCEEEecCchhh------------cCcc---cCcCCceecCCCCCCcCCC-------cCCHHHHhhh
Confidence            77 8 99999988888888898874            2211   0134678999999999964       6899999876


Q ss_pred             cc
Q psy15495        149 ED  150 (158)
Q Consensus       149 ~~  150 (158)
                      .+
T Consensus        82 ~~   83 (84)
T 2l27_A           82 LN   83 (84)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2xdg_A Growth hormone-releasing hormone receptor; signaling protein, membrane protein; 1.95A {Homo sapiens}

Probab=97.34  E-value=8.7e-05  Score=51.13  Aligned_cols=60  Identities=17%  Similarity=0.245  Sum_probs=43.1

Q ss_pred             eeeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccc
Q psy15495         65 RTCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNY  142 (158)
Q Consensus        65 R~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny  142 (158)
                      ..|..  || |.+||.+.++-.....|+.+..            ++.    ...++++|.|+.+| |      ..+|.||
T Consensus        22 ~~C~~~wD~-~~CWp~t~~G~~v~~~CP~~~~------------~~~----~~~~~v~R~C~~~G-W------~~~~~~y   77 (92)
T 2xdg_A           22 LGCPATWDG-LLCWPTAGSGEWVTLPCPDFFS------------HFS----SESGAVKRDCTITG-W------SEPFPPY   77 (92)
T ss_dssp             SSBCCEECS-SCEECCBCTTEEEEECCCGGGG------------GTC----SSCCCEEEEEETTE-E------CCCBSCH
T ss_pred             CCCCcccCc-ccccCCCCCCCEEEecCcchhc------------ccc----ccCCeEecCCCccc-C------CCCcCCc
Confidence            34555  77 8999998888778888988742            211    12468999999999 8      4578999


Q ss_pred             cccccc
Q psy15495        143 TTCIDI  148 (158)
Q Consensus       143 ~~C~~~  148 (158)
                      +.|-.+
T Consensus        78 ~~~C~~   83 (92)
T 2xdg_A           78 PVACPV   83 (92)
T ss_dssp             HHHSCC
T ss_pred             cccccc
Confidence            665443

>2x57_A Vasoactive intestinal polypeptide receptor 2; G-protein coupled receptor, circadian rhythm, MALE reproduct hormone binding, growth, transducer; 2.10A {Homo sapiens}

Probab=97.19  E-value=0.00013  Score=52.48  Aligned_cols=61  Identities=10%  Similarity=0.199  Sum_probs=43.6

Q ss_pred             eeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccc-
Q psy15495         66 TCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNY-  142 (158)
Q Consensus        66 ~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny-  142 (158)
                      .|..  || |.+||.+.++-.....|+.+.            .++.    -..++++|.|+++| |      +++|.|| 
T Consensus        49 ~C~~twD~-~~CWp~t~~G~~v~~~CP~~~------------~~~~----~~~g~v~R~C~~~G-W------s~~~p~y~  104 (116)
T 2x57_A           49 ACSGVWDN-ITCWRPANVGETVTVPCPKVF------------SNFY----SKAGNISKNCTSDG-W------SETFPDFV  104 (116)
T ss_dssp             SBCCEEET-TEEECCBCTTCEEEEECCGGG------------GGGB----SSCCEEEEEEETTE-E------CCCBSCHH
T ss_pred             CCCcccCc-ccccCCCCCCCEEEecCcccc------------cCcc----CCCCeEEeeCCccc-C------CCCCCCch
Confidence            3554  77 788998888877888898874            2221    12568999999999 9      5789885 


Q ss_pred             cccccccc
Q psy15495        143 TTCIDIED  150 (158)
Q Consensus       143 ~~C~~~~~  150 (158)
                      +.|....+
T Consensus       105 ~~C~~~~~  112 (116)
T 2x57_A          105 DACGYSDP  112 (116)
T ss_dssp             HHHTBCCC
T ss_pred             hhcCCCCC
Confidence            57765433

>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*

Probab=97.07  E-value=0.00018  Score=61.12  Aligned_cols=69  Identities=12%  Similarity=0.201  Sum_probs=46.4

Q ss_pred             eeeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccc
Q psy15495         65 RTCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNY  142 (158)
Q Consensus        65 R~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny  142 (158)
                      ..|..  || +.|||.+..+-.....|+.+.            .++..  ....+.++|.|+.+| |      +++|.||
T Consensus       402 ~~c~~~~d~-~~cw~~~~~g~~~~~~cp~~~------------~~~~~--~~~~~~~~r~c~~~g-w------~~~~~~~  459 (475)
T 3n94_A          402 PGCPGMWDN-ITCWKPAHVGEMVLVSCPELF------------RIFNP--DQDMGVVSRNCTEDG-W------SEPFPHY  459 (475)
T ss_dssp             CSBCCEECS-SCEECCBCTTCEEEEECCGGG------------GGTCT--TGGGCEEEEEEETTE-E------CCCBSCH
T ss_pred             CCCCCcccc-cccCCCCCCCCeEecccchhh------------cCcCc--CCCCCceeeecCccc-C------CCCCCCH
Confidence            35666  66 778888777766777787653            22210  001267999999999 9      6789999


Q ss_pred             ccccccccccccc
Q psy15495        143 TTCIDIEDLKVST  155 (158)
Q Consensus       143 ~~C~~~~~~~~~~  155 (158)
                      +.|..+++.+...
T Consensus       460 ~~~~~~~~~~~~~  472 (475)
T 3n94_A          460 FDACGFDEYEHHH  472 (475)
T ss_dssp             HHHHSSCSCC---
T ss_pred             HHHhCCCCCcccc
Confidence            9998887765543

>2jod_A Pituitary adenylate cyclase-activating polypeptide type I receptor; protein/peptide complex, signaling protein; NMR {Homo sapiens} SCOP: g.76.1.1

Probab=96.88  E-value=0.00059  Score=48.09  Aligned_cols=61  Identities=15%  Similarity=0.212  Sum_probs=42.6

Q ss_pred             eeeeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeee-cceeEeeeCCCCeEeecCCCCCccc
Q psy15495         64 LRTCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIIN-LRFALRTCLENGTWFQHPVTRKFWS  140 (158)
Q Consensus        64 ~R~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~-~~~a~k~C~~nG~W~~~p~s~~~w~  140 (158)
                      ...|..  || |.+||.+.++-.....|+.+.            .++.   ... .++++|.|+++| |      +++|.
T Consensus        35 ~~~C~~~wD~-~~CWp~t~~G~~v~~~CP~~~------------~~~~---~~~~~g~v~R~C~~~G-W------s~~~~   91 (106)
T 2jod_A           35 SPGCPGMWDN-ITCWKPAHVGEMVLVSCPELF------------RIFN---PDQDMGVVSRNCTEDG-W------SEPFP   91 (106)
T ss_dssp             SCBCCCEECS-SCEECCCBTTCCEEECCSCSS------------CCCS---CCSCCSCEEECBCSSC-B------CCCSS
T ss_pred             CCCCCcccCc-ccccCCCCCCCEEEecCcchh------------cCCC---CcCcCCeEEecCCccc-C------CCCCC
Confidence            344665  88 899999988877888898874            2221   011 357999999999 9      56788


Q ss_pred             cc-ccccc
Q psy15495        141 NY-TTCID  147 (158)
Q Consensus       141 ny-~~C~~  147 (158)
                      || +.|..
T Consensus        92 ~y~~~C~~   99 (106)
T 2jod_A           92 HYFDACGF   99 (106)
T ss_dssp             CCSSCSCS
T ss_pred             CchhhhCC
Confidence            75 45543

>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS motif, autoproteolytic fold, extra signaling protein; HET: NAG FUL; 2.30A {Homo sapiens}

Probab=96.65  E-value=0.00058  Score=57.71  Aligned_cols=54  Identities=30%  Similarity=0.564  Sum_probs=44.2

Q ss_pred             CCCcccccccccCCCCCCCceEEecCCccccccccccceeeeeCCC--C--eEEecCCCCccccccccccC
Q psy15495         25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLEN--G--TWFQHPVTRKFWSNYTTCID   91 (158)
Q Consensus        25 ~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~d--G--~W~~~p~t~~~wtnYt~C~~   91 (158)
                      .+||..+.+-.-||.|++|.++.++||.-     ..|.|+|.|..+  |  .|..        +++..|..
T Consensus        18 ~~C~~~~~~~i~Wp~T~~G~~a~~~Cp~g-----~~G~a~r~C~~~~~g~~~W~~--------p~~~~CtS   75 (382)
T 4dlo_A           18 EICPEDYLMSMVWKRTPAGDLAFNQCPLN-----ATGTTSRRCSLSLHGVAFWEQ--------PSFARCIS   75 (382)
T ss_dssp             CEECCBCTTTSCBCCEETTCEEEECCCTT-----EEEEEEEEEEECTTSCEEECC--------CEEEEEEE
T ss_pred             ccCChhhcCceEECCCCCCCeEEccCcCC-----CceeEEEEeCCCCCCceecCC--------CCcccCCC
Confidence            47999999899999999999999999974     346899999964  5  4642        57888964

>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1

Probab=93.77  E-value=0.0045  Score=34.13  Aligned_cols=21  Identities=5%  Similarity=-0.254  Sum_probs=17.6

Q ss_pred             HHHHHhhhceecceeeeeeee
Q psy15495         95 LKVYLFLSCCFNGKKNGLIIN  115 (158)
Q Consensus        95 ~~~~~~~~~ly~gytvgys~~  115 (158)
                      .+.++++..|+++||||||++
T Consensus        11 ~~~~e~FeRL~~iYTVGYSis   31 (31)
T 1bl1_A           11 TREREVFDRLGMIYTVGYSVC   31 (31)
T ss_dssp             CCHHHHHHSSHHHHHHHHHCC
T ss_pred             cchHHHHhheeeEEEEeeeeC
Confidence            356788999999999999864

>3r62_A H factor 1, complement factor H; immunity, repeating sushi domain, regulator of C activation, C3D, immune system; 1.52A {Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A 3kxv_A 3kzj_A 2xqw_C

Probab=92.98  E-value=0.16  Score=35.59  Aligned_cols=79  Identities=16%  Similarity=0.367  Sum_probs=48.1

Q ss_pred             CCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHHHH-Hh------hhcee--cceee
Q psy15495         40 TLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVY-LF------LSCCF--NGKKN  110 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~-~~------~~~ly--~gytv  110 (158)
                      -..|++|...|...   |.-.|...+.|. +|+|.. +   ..-..  .|......... .+      ....|  .|-+|
T Consensus        26 ~~~g~~v~y~C~~G---y~l~G~~~~~C~-~g~Ws~-~---p~C~~--~C~~p~~~~~g~~i~~~~~~~~~~y~~~g~~v   95 (129)
T 3r62_A           26 YAPASSVEYQCQNL---YQLEGNKRITCR-NGQWSE-P---PKCLH--PCVISREIMENYNIALRWRAKQKLYSRTGESV   95 (129)
T ss_dssp             BCTTCEEEEEECTT---CEEESCSEEEEE-TTEECC-C---CEEEC--CEECCHHHHHHHTEEETTTTTCCSEECTTCEE
T ss_pred             CCCCCEEEEECCCC---CEeCCCCeeEcC-CCcCCC-C---CCccC--cCCCChhhhcccceeeeecccccccccCCCEE
Confidence            35789999999863   333566789999 999972 1   11222  56654322111 11      12233  47777


Q ss_pred             eeeeecce-----e---EeeeCCCCeE
Q psy15495        111 GLIINLRF-----A---LRTCLENGTW  129 (158)
Q Consensus       111 gys~~~~~-----a---~k~C~~nG~W  129 (158)
                      .|.|..++     .   ...|. +|+|
T Consensus        96 ~f~C~~Gy~l~G~~~~~~~~C~-~G~W  121 (129)
T 3r62_A           96 EFVCKRGYRLSSRSHTLRTTCW-DGKL  121 (129)
T ss_dssp             EEEECTTEEECTTSCCSEEECB-TTBC
T ss_pred             EEEeCCCccccCCCCcceEEeC-CCcC
Confidence            78777442     3   78899 8999

>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1

Probab=91.55  E-value=0.094  Score=36.83  Aligned_cols=84  Identities=17%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             CCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHh--hhceecceeeeeeeecc
Q psy15495         40 TLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLF--LSCCFNGKKNGLIINLR  117 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~--~~~ly~gytvgys~~~~  117 (158)
                      -..|++|...|..-   | -.|...+.|..+|+|.....   .-. -..|.......-..+  ...+..|-++.|.|..+
T Consensus        26 ~~~g~~~~y~C~~G---y-l~G~~~~~C~~~g~Ws~~~p---~C~-~~~C~~p~~~~nG~~~~~~~~~~g~~v~~~C~~G   97 (128)
T 1gkn_A           26 FPIGTSLKYECRPE---Y-YGRPFSITCLDNLVWSSPKD---VCK-RKSCKTPPDPVNGMVHVITDIQVGSRITYSCTTG   97 (128)
T ss_dssp             EESSCEEEEEECTT---E-ESCCEEEEBCSSSCBCCCCS---CCE-ECBCCCCCCCTTEEEEESSCCBTTCEEEEEECTT
T ss_pred             cCCCCEEEEEcCCC---C-cCCCCceEECCCCcCCCCCC---eEc-ceECcCCCCCCCcEEEeccCCccCCEEEEEeCCC
Confidence            45799999999874   4 35778999999999974210   111 124554321110000  01223466666777643


Q ss_pred             -----eeEeeeCCCCe---Eee
Q psy15495        118 -----FALRTCLENGT---WFQ  131 (158)
Q Consensus       118 -----~a~k~C~~nG~---W~~  131 (158)
                           ...+.|..+|+   |..
T Consensus        98 y~l~G~~~~~C~~~G~~~~Ws~  119 (128)
T 1gkn_A           98 HRLIGHSSAECILSGNTAHWST  119 (128)
T ss_dssp             EECCSCSEEEEEECSSSEEESS
T ss_pred             CEEccCCceEEcCCCCcCCccC
Confidence                 35789999999   964

>2qy0_A Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens}

Probab=91.48  E-value=0.077  Score=38.70  Aligned_cols=88  Identities=14%  Similarity=0.210  Sum_probs=48.7

Q ss_pred             CCCCceEEecCCccccccccc---cceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHh-----hhceecceeee
Q psy15495         40 TLAGETARTPCPNFIVGFDSR---RFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLF-----LSCCFNGKKNG  111 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~---~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~-----~~~ly~gytvg  111 (158)
                      -..|.+|...|-.-+......   +...+.|..||+|....   ..- .-..|..........+     -..+..+-++.
T Consensus        24 ~~~g~~v~y~C~~Gy~l~g~~~~~~s~~~~C~~~G~Ws~~~---p~C-~~~~C~~p~~~~nG~~~~~~~~~~~~~g~~v~   99 (159)
T 2qy0_A           24 YQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAM---PRC-KIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQ   99 (159)
T ss_dssp             CBTTCEEEEEECTTEEEEETTEEESCCEEEBCTTSCBSSCC---CEE-EECBCCSCCCCTTEEEEESSSTTCCBTTCEEE
T ss_pred             cccCCEEEEEcCCCcEEccCCcccceeEEECCCCCcCcCCC---Ccc-ccccCCCCCCCCCCeeEeccCCCCcccCCEEE
Confidence            457899999998643221111   14789999999997410   000 1124654321110000     01223456666


Q ss_pred             eeeecce--------------eEeeeCCCCeEee
Q psy15495        112 LIINLRF--------------ALRTCLENGTWFQ  131 (158)
Q Consensus       112 ys~~~~~--------------a~k~C~~nG~W~~  131 (158)
                      |.|...+              ..+.|..+|+|..
T Consensus       100 y~C~~Gy~~~~~~~G~~~~g~~~~~C~~~G~Ws~  133 (159)
T 2qy0_A          100 YYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKN  133 (159)
T ss_dssp             EEECTTTEEECCC---CCSSTTEEEECTTSSEEB
T ss_pred             EECCCcceecccccCccccCCccEEECCCccCCC
Confidence            7776432              4678999999975

>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens}

Probab=90.45  E-value=0.085  Score=37.53  Aligned_cols=87  Identities=18%  Similarity=0.231  Sum_probs=50.4

Q ss_pred             CCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHh--hhceecceeeeeeeecc
Q psy15495         40 TLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLF--LSCCFNGKKNGLIINLR  117 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~--~~~ly~gytvgys~~~~  117 (158)
                      -..|++|...|..-+.  ...|...+.|..+|+|.. ..   .-. -..|.......-..+  -..+..|-++.|.|..+
T Consensus        24 y~~g~~v~y~C~~Gy~--~l~G~~~~~C~~~G~Ws~-~p---~C~-~~~C~~p~~~~nG~~~~~~~~~~g~~v~~~C~~G   96 (133)
T 2a55_A           24 FKTGTTLKYTCLPGYV--RSHSTQTLTCNSDGEWVY-NT---FCI-YKRCRHPGELRNGQVEIKTDLSFGSQIEFSCSEG   96 (133)
T ss_dssp             CCTTCCCCCBCCTTEE--SCCSCCCCEECSSSSEEC-CC---CSE-ECBCCCCCCCTTBCCCCCSTTBSSCBCCCCBCTT
T ss_pred             cCCCCEEEEEeCCCCc--ccCCCCEEEECCCCeECC-CC---cCc-cCCCcCCCccCCceEEcCCCCcCCCEEEEEcCCC
Confidence            3579999999986331  335788999999999985 11   111 124544321100000  01123455666666633


Q ss_pred             -----eeEeeeCCCC---eEeecC
Q psy15495        118 -----FALRTCLENG---TWFQHP  133 (158)
Q Consensus       118 -----~a~k~C~~nG---~W~~~p  133 (158)
                           ...+.|..+|   +|...+
T Consensus        97 y~L~G~~~~~C~~~G~~~~Ws~~~  120 (133)
T 2a55_A           97 FFLIGSTTSRCEVQDRGVGWSHPL  120 (133)
T ss_dssp             CBCCSCSCCBCCCCSSSCCCSCCC
T ss_pred             CEEcCCCeeEecCCCCCCEeCCCC
Confidence                 3578999999   886543

>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi domain, human complement system, complement second component C2; 1.80A {Homo sapiens}

Probab=89.66  E-value=0.22  Score=38.18  Aligned_cols=88  Identities=19%  Similarity=0.313  Sum_probs=48.6

Q ss_pred             CCCCCceEEecCCccccccccccceeeeeCCCCeEEecCCC----CccccccccccCcchHHHHHh---hhceecceeee
Q psy15495         39 ATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVT----RKFWSNYTTCIDIEDLKVYLF---LSCCFNGKKNG  111 (158)
Q Consensus        39 ~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t----~~~wtnYt~C~~~~~~~~~~~---~~~ly~gytvg  111 (158)
                      ....|++|...|..-+.   -.+ +++.|..+|+|...+..    ...-. -..|......+...+   ...+..|-++.
T Consensus        20 ~~~~g~~~~y~C~~Gy~---l~g-~~~~C~~~G~Ws~~~~~~~~~~p~C~-~~~C~~p~~~~nG~~~~~~~~~~~g~~v~   94 (223)
T 3erb_A           20 GWAPGSLLTYSCPQGLY---PSP-ASRLCKSSGQWQTPGATRSLSKAVCK-PVRCPAPVSFENGIYTPRLGSYPVGGNVS   94 (223)
T ss_dssp             TTSTTCEEEEECCTTEE---EES-CEEEECTTSCEECC-------CCEEE-ECEEECCSCCTTEEEESCCSEEETTCEEE
T ss_pred             CCcCCCEEEEECCCCCe---ecC-CeeEECCCCeECCCccCCCCCCCeEe-eeECcCCCCCCCCEEecCCCCccCCCEEE
Confidence            34689999999987433   234 45999999999852100    00000 123543321110000   01223455666


Q ss_pred             eeeecc-----eeEeeeCCCCeEee
Q psy15495        112 LIINLR-----FALRTCLENGTWFQ  131 (158)
Q Consensus       112 ys~~~~-----~a~k~C~~nG~W~~  131 (158)
                      |.|..+     ...+.|..+|+|..
T Consensus        95 ~~C~~Gy~l~G~~~~~C~~~G~Ws~  119 (223)
T 3erb_A           95 FECEDGFILRGSPVRQCRPNGMWDG  119 (223)
T ss_dssp             EEECTTCEEESCSEEEBCTTSCBSS
T ss_pred             EEeCCCCEEcCCCceEECCCCeECC
Confidence            666643     34789999999974

>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat, sushi, complement control protein, N glycosylation, multi-domain, membrane adhesion; HET: NAG MAN; 2.70A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A

Probab=88.17  E-value=0.28  Score=39.76  Aligned_cols=85  Identities=14%  Similarity=0.115  Sum_probs=48.1

Q ss_pred             CCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHh-------hhceecceeeee
Q psy15495         40 TLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLF-------LSCCFNGKKNGL  112 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~-------~~~ly~gytvgy  112 (158)
                      ...|.+|...|..-   |.-.|...+.|..+|+|....-   .- .-..|..........+       -..+..|-++.|
T Consensus        81 ~~~g~~v~~~C~~G---y~l~G~~~~~C~~~G~Ws~~~P---~C-~~~~C~~p~~~~~g~~~~~~~~~~~~~~~g~~v~y  153 (319)
T 1qub_A           81 FEYPNTISFSCNTG---FYLNGADSAKCTEEGKWSPELP---VC-APIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVF  153 (319)
T ss_dssp             SBTTCEEEEEECTT---EEEESCSEEEECTTSCEESCCC---EE-EECEECCCCCCTTEEEEECCCSBTTBEETTCEEEE
T ss_pred             cccCCEEEEECCCC---ceeCCCCceEECCCCeECCCCC---CC-ccCcCCCCCCCCCceEEecccCCCCceecCCEEEE
Confidence            44677788888753   3335678999999999974210   00 0123544321110000       012234556666


Q ss_pred             eeecc-----eeEeeeCCCCeEee
Q psy15495        113 IINLR-----FALRTCLENGTWFQ  131 (158)
Q Consensus       113 s~~~~-----~a~k~C~~nG~W~~  131 (158)
                      .|..+     ...+.|..+|+|..
T Consensus       154 ~C~~Gy~l~G~~~~~C~~~G~Ws~  177 (319)
T 1qub_A          154 ECLPQHAMFGNDTITCTTHGNWTK  177 (319)
T ss_dssp             EECTTEEEESCSEEEBCTTSSBSC
T ss_pred             EeCCCceecCCCeEEECCCCeECC
Confidence            66643     34789999999974

>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_A

Probab=87.93  E-value=0.24  Score=35.71  Aligned_cols=87  Identities=15%  Similarity=0.227  Sum_probs=46.2

Q ss_pred             CCCceEEecCCccccccccc---cceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHh-----hhceecceeeee
Q psy15495         41 LAGETARTPCPNFIVGFDSR---RFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLF-----LSCCFNGKKNGL  112 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~---~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~-----~~~ly~gytvgy  112 (158)
                      ..|++|...|-.-+......   +...+.|..+|+|....   ..- .-..|.......-..+     ...+..|-++.|
T Consensus        27 ~~g~~v~y~C~~Gy~l~g~~~~~~s~~~~C~~~G~Ws~~~---p~C-~~~~C~~p~~~~nG~~~~~~~~~~~~~g~~v~y  102 (155)
T 3gov_A           27 FFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKI---PTC-KIVDCRAPGELEHGLITFSTRNNLTTYKSEIKY  102 (155)
T ss_dssp             ETTCEEEEEECTTEEEEETTEEESEEEEEBCTTSCBSSCC---CEE-EECBCCSCCCCTTEEEEESSTTCCCBTTCEEEE
T ss_pred             ccCCEEEEECCCCcEEccCccccceeEEEECCCCeEcCCC---Cee-eEccCCCCCCCcCceEEecCCCCccccCCEEEE
Confidence            56889999997533221111   12389999999996421   000 1124544321110000     112234556666


Q ss_pred             eeecc--------eeEeeeCCCCeEee
Q psy15495        113 IINLR--------FALRTCLENGTWFQ  131 (158)
Q Consensus       113 s~~~~--------~a~k~C~~nG~W~~  131 (158)
                      .|..+        ...+.|..+|+|..
T Consensus       103 ~C~~Gy~~l~~~G~~~~~C~~~G~Ws~  129 (155)
T 3gov_A          103 SCQEPYYKMLNNNTGIYTCSAQGVWMN  129 (155)
T ss_dssp             EECTTTEEECTTCCCEEEECTTSCEEB
T ss_pred             EeCCChhhhccCCCceEEECCCCeECC
Confidence            66532        24678999999975

>1ly2_A CD21, complement receptor type 2; epstein BARR virus, regulator of comple activation, short consensus repeat, viral receptor; HET: NAG; 1.80A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1w2r_A 1w2s_B 1ghq_B* 3oed_C

Probab=87.67  E-value=0.22  Score=34.71  Aligned_cols=84  Identities=17%  Similarity=0.225  Sum_probs=48.8

Q ss_pred             CCCceEEecCCccccccccccceeeeeCC----CCeEEecCCCCccccc---cccccCcchHHHHHhh---hceecceee
Q psy15495         41 LAGETARTPCPNFIVGFDSRRFALRTCLE----NGTWFQHPVTRKFWSN---YTTCIDIEDLKVYLFL---SCCFNGKKN  110 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~----dG~W~~~p~t~~~wtn---Yt~C~~~~~~~~~~~~---~~ly~gytv  110 (158)
                      ..|++|...|-.-   |.-.|...+.|..    +|+|....   ..-..   -..|....... ..+.   ..+..|-++
T Consensus        23 ~~g~~v~y~C~~G---y~l~G~~~~~C~~~~~~~g~Ws~~~---P~C~~~~~~~~C~~p~~~~-g~~~~~~~~~~~g~~v   95 (130)
T 1ly2_A           23 AVGTVIRYSCSGT---FRLIGEKSLLCITKDKVDGTWDKPA---PKCEYFNKYSSCPEPIVPG-GYKIRGSTPYRHGDSV   95 (130)
T ss_dssp             ETTCEEEEEECTT---EEEESCSEEEEECSSSSSCEESSCC---CEEEECCTTCEECCCCCTT-EEEEECCSSEETTCEE
T ss_pred             cCCCEEEEEcCCC---CEEeCCCeeEEeCCCCCCCeECCCC---CeeEcccCccCCcCCCCCC-CeEecCcccccCCCEE
Confidence            5789999999863   4335678999996    89997421   01111   13454432110 0000   122345666


Q ss_pred             eeeeecc-----eeEeeeCCCCeEee
Q psy15495        111 GLIINLR-----FALRTCLENGTWFQ  131 (158)
Q Consensus       111 gys~~~~-----~a~k~C~~nG~W~~  131 (158)
                      .|.|..+     ...+.|..+|+|..
T Consensus        96 ~~~C~~Gy~l~G~~~~~C~~~G~Ws~  121 (130)
T 1ly2_A           96 TFACKTNFSMNGNKSVWCQANNMWGP  121 (130)
T ss_dssp             EEEECTTEEEESCSEEEECTTSSEES
T ss_pred             EEEeCCCCEEeCCCceEECCCCEECC
Confidence            6666643     34789999999964

>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi domain, human complement system, complement second component C2; 1.80A {Homo sapiens}

Probab=86.93  E-value=0.26  Score=37.72  Aligned_cols=84  Identities=21%  Similarity=0.239  Sum_probs=46.3

Q ss_pred             CCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccc-cccccCcchHHHHH-hhhceecceeeeeeeecc--
Q psy15495         42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSN-YTTCIDIEDLKVYL-FLSCCFNGKKNGLIINLR--  117 (158)
Q Consensus        42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtn-Yt~C~~~~~~~~~~-~~~~ly~gytvgys~~~~--  117 (158)
                      .|++|...|..-   |.-.|...+.|..+|+|....   ..-.. -..|.......-.. .-..+..|-++.|.|..+  
T Consensus        89 ~g~~v~~~C~~G---y~l~G~~~~~C~~~G~Ws~~~---P~C~~~~~~C~~p~~~~g~~~~~~~~~~g~~v~~~C~~Gy~  162 (223)
T 3erb_A           89 VGGNVSFECEDG---FILRGSPVRQCRPNGMWDGET---AVCDNGAGHCPNPGISLGAVRTGFRFGHGDKVRYRCSSNLV  162 (223)
T ss_dssp             TTCEEEEEECTT---CEEESCSEEEBCTTSCBSSCC---CEEECSCSSSCCCCCCTTEEEECCCCSTTCEEEEEECTTCE
T ss_pred             CCCEEEEEeCCC---CEEcCCCceEECCCCeECCCC---CEEEeCCccCcCCCCCCCcEecCCCCCCCCEEEEEeCCCCE
Confidence            466677777653   333466789999999997411   01111 12454432110000 011223456677777643  


Q ss_pred             ---eeEeeeCCCCeEee
Q psy15495        118 ---FALRTCLENGTWFQ  131 (158)
Q Consensus       118 ---~a~k~C~~nG~W~~  131 (158)
                         ...+.|..+|+|..
T Consensus       163 l~G~~~~~C~~~G~Ws~  179 (223)
T 3erb_A          163 LTGSSERECQGNGVWSG  179 (223)
T ss_dssp             EESCSEEEBCTTSCBSS
T ss_pred             EcCCCceEECCCCeECC
Confidence               24789999999974

>3sw0_X H factor 1, complement factor H; innate immune response, sushi domains, cofactor in the inact of C3B, C3B, human plasma, immune system; 1.80A {Homo sapiens}

Probab=86.89  E-value=0.45  Score=35.32  Aligned_cols=83  Identities=20%  Similarity=0.244  Sum_probs=47.6

Q ss_pred             CCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCcccccc-ccccCcchHHHHHh----hhceecceeeeeee
Q psy15495         40 TLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNY-TTCIDIEDLKVYLF----LSCCFNGKKNGLII  114 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnY-t~C~~~~~~~~~~~----~~~ly~gytvgys~  114 (158)
                      -..|++|...|..-   |.-.|...+.|. +|+|...    ..-... ..|..........+    ...+..|-++.|.|
T Consensus        24 ~~~g~~~~y~C~~G---y~l~G~~~~~C~-~g~Ws~~----p~C~~~~~~C~~p~~~~ng~~~~~~~~~~~~g~~v~~~C   95 (188)
T 3sw0_X           24 YPSGERVRYQCRSP---YEMFGDEEVMCL-NGNWTEP----PQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQC   95 (188)
T ss_dssp             BCTTCEEEEEECTT---CEEESCSEEEEE-TTEECCC----CEEECTTCCBCSCCCCTTEEESSCCCSCBCTTCEEEEEE
T ss_pred             ccCCCEEEEECCCC---CEECCCCEEEeC-CCEeCCC----CccCcCCCcCCCCCccCCCeEecCCCCcccCCCEEEEEc
Confidence            35799999999863   433567799999 9999731    111111 24654321110000    01122355666666


Q ss_pred             ecc-----eeEeeeCCCCeEee
Q psy15495        115 NLR-----FALRTCLENGTWFQ  131 (158)
Q Consensus       115 ~~~-----~a~k~C~~nG~W~~  131 (158)
                      ..+     ...+.|. +|+|..
T Consensus        96 ~~Gy~l~G~~~~~C~-~G~Ws~  116 (188)
T 3sw0_X           96 QNLYQLEGNKRITCR-NGQWSE  116 (188)
T ss_dssp             CTTCEEESCSEEEEE-TTEECC
T ss_pred             CCCCEECCCCeEEcC-CCccCC
Confidence            633     3578999 999975

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=86.81  E-value=0.23  Score=44.13  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=50.3

Q ss_pred             CCceEEecCCccccccccccceeeeeCCCCeEEecCCC------CccccccccccCcchHHHHHh---hhceecceeeee
Q psy15495         42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVT------RKFWSNYTTCIDIEDLKVYLF---LSCCFNGKKNGL  112 (158)
Q Consensus        42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t------~~~wtnYt~C~~~~~~~~~~~---~~~ly~gytvgy  112 (158)
                      .|++|...|..   ||.-.+..++.|..+|+|...+..      ..... -..|......+-..+   -..+..|-++.|
T Consensus        29 ~g~~~~y~C~~---Gy~l~g~~~~~C~~~g~Ws~~~~~~~~~~~~p~C~-~~~C~~p~~~~ng~~~~~~~~~~~g~~~~~  104 (741)
T 3hrz_D           29 EGQALEYVCPS---GFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECR-AIHCPRPHDFENGEYWPRSPYYNVSDEISF  104 (741)
T ss_dssp             GGTEEEEECCT---TEEEESCSEEEBCTTSCBCCEECTTCCEESCCEEE-ECEECCCSCCTTEEEECCCSSEETTCEEEE
T ss_pred             CCCEEEEEeCC---CCEECCCCeEEECCCCcCCCCCcccccCcCCCeEE-eeECcCCCCCCCCEEeccCCCcccCCEEEE
Confidence            79999999997   344456678999999999753110      00011 123544321110000   011234666777


Q ss_pred             eeecc-----eeEeeeCCCCeEee
Q psy15495        113 IINLR-----FALRTCLENGTWFQ  131 (158)
Q Consensus       113 s~~~~-----~a~k~C~~nG~W~~  131 (158)
                      .|..+     ...+.|..+|+|..
T Consensus       105 ~C~~Gy~l~G~~~~~C~~~g~Ws~  128 (741)
T 3hrz_D          105 HCYDGYTLRGSANRTCQVNGRWSG  128 (741)
T ss_dssp             EECTTCEEESCSEEEBCTTSCBSS
T ss_pred             EECCCCccCCCcceEecCCCeEcc
Confidence            77744     34789999999963

>1gkg_A Complement receptor type 1; module, SCR, structure, sushi; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1ppq_A

Probab=85.23  E-value=0.37  Score=33.99  Aligned_cols=86  Identities=17%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             CCCCCceEEecCCccccccccccceeeeeCCCCe---EEecCCCCccccccccccCcchHHHHHhh----hceecceeee
Q psy15495         39 ATLAGETARTPCPNFIVGFDSRRFALRTCLENGT---WFQHPVTRKFWSNYTTCIDIEDLKVYLFL----SCCFNGKKNG  111 (158)
Q Consensus        39 ~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~---W~~~p~t~~~wtnYt~C~~~~~~~~~~~~----~~ly~gytvg  111 (158)
                      .-..|++|...|..-   |.-.|...+.|..+|+   |...+-   .- .-..|..........+.    ..+..|-++.
T Consensus        23 ~~~~g~~v~y~C~~G---y~l~G~~~~~C~~~G~~~~Ws~~~P---~C-~~~~C~~p~~~~nG~~~~~~~~~~~~g~~v~   95 (136)
T 1gkg_A           23 DIQVGSRITYSCTTG---HRLIGHSSAECILSGNTAHWSTKPP---IC-QRIPCGLPPTIANGDFISTNRENFHYGSVVT   95 (136)
T ss_dssp             CSBTTCEEEEECCSS---EEECSCSEEEEEECSSSEEESSCCC---CE-EECCCCCCCCCTTCCBCSSCSSCCCSSCEEE
T ss_pred             CCccCCEEEEECCCC---CeEcCCCceEEeCCCccccccCCCC---CE-EeecCCCCCCCCCCeEEcCCCCccccCCEEE
Confidence            456899999999873   3335678999999999   974210   00 11245543211100110    1122455666


Q ss_pred             eeeecc-----------eeEeeeCCC----CeEee
Q psy15495        112 LIINLR-----------FALRTCLEN----GTWFQ  131 (158)
Q Consensus       112 ys~~~~-----------~a~k~C~~n----G~W~~  131 (158)
                      |.|..+           ...+.|..+    |+|..
T Consensus        96 y~C~~Gy~~~~~y~l~G~~~~~C~~~~~~~G~Ws~  130 (136)
T 1gkg_A           96 YRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSG  130 (136)
T ss_dssp             BCCCCTTSCCSSCCEESCCEEECCCSSSSSCCCSC
T ss_pred             EEeCCCCCccceEEEeCCCeeEECCCCCCCCEECC
Confidence            666533           247899999    99964

>4ayi_A H factor 1, complement factor H; immune system, antigens; 2.31A {Homo sapiens} PDB: 4aye_A 4ayd_A 4aym_A 2w80_A 2w81_A 2jgw_A 2jgx_A

Probab=85.16  E-value=0.82  Score=31.88  Aligned_cols=85  Identities=16%  Similarity=0.216  Sum_probs=44.8

Q ss_pred             CCCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCc-chHHHHHhhh-ceecceeeeeeeec
Q psy15495         39 ATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDI-EDLKVYLFLS-CCFNGKKNGLIINL  116 (158)
Q Consensus        39 ~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~-~~~~~~~~~~-~ly~gytvgys~~~  116 (158)
                      +...|++|+..|-.-+............|..+| |...|.    -.. ..|.+. .+... .... .+..|-+|.|.|..
T Consensus        28 p~~~G~~v~y~C~~Gy~l~g~~~~~~~~C~~~g-Ws~~P~----C~~-~~c~P~i~nG~~-~~~~~~y~~g~~v~y~C~~  100 (125)
T 4ayi_A           28 PVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDG-WSPAVP----CLR-KCYFPYLENGYN-QNHGRKFVQGKSIDVACHP  100 (125)
T ss_dssp             SBCTTCEEEEEECTTEECTTSSSEEEEEEETTE-EESSSC----CEE-EEECCCCTTBCC-TTTTCEEETTCEEECCBCT
T ss_pred             cccCCCEEEEEcCCCCEECCCCccCEEEeCCCc-ccCCCC----CcC-cCCCCCCCCCEE-eCCCCcccCCCEEEEEcCC
Confidence            457899999999863322111222346899999 974221    111 122221 11111 0111 12346677777763


Q ss_pred             ------ceeEeeeCCCCeEee
Q psy15495        117 ------RFALRTCLENGTWFQ  131 (158)
Q Consensus       117 ------~~a~k~C~~nG~W~~  131 (158)
                            +...+.|..+| |..
T Consensus       101 Gy~l~~g~~~~~C~~~g-Ws~  120 (125)
T 4ayi_A          101 GYALPKAQTTVTCMENG-WSP  120 (125)
T ss_dssp             TCCCGGGCCEEEEETTE-EES
T ss_pred             CCEeCCCCceEEECCCc-ccC
Confidence                  23478899988 963

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=85.05  E-value=0.81  Score=37.24  Aligned_cols=86  Identities=17%  Similarity=0.232  Sum_probs=50.9

Q ss_pred             CCCCceEEecCCccccccccccceeeeeC----CCCeEEecCCCCccccc---cccccCcchHHHHHh--hhceecceee
Q psy15495         40 TLAGETARTPCPNFIVGFDSRRFALRTCL----ENGTWFQHPVTRKFWSN---YTTCIDIEDLKVYLF--LSCCFNGKKN  110 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~~~a~R~C~----~dG~W~~~p~t~~~wtn---Yt~C~~~~~~~~~~~--~~~ly~gytv  110 (158)
                      -..|.+|...|-.   ||.-.|...+.|.    .+|+|....-   .-..   ...|.......-...  -..+..|-++
T Consensus        22 ~~~g~~~~y~C~~---Gy~l~G~~~~~C~~~~~~~g~Ws~~~P---~C~~~~~~~~C~~p~~~~~~~~~~~~~~~~g~~~   95 (376)
T 2aty_A           22 IAVGTVIRYSCSG---TFRLIGEKSLLCITKDKVDGTWDKPAP---KCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSV   95 (376)
T ss_pred             ccCCCEEEEEeCC---CCEEcCCCceEEeccCCCCCeECCCCC---ccccccCccEeCCCcCCCCeEecCCCCccCCCEE
Confidence            4689999999986   4444667889999    7999975211   1111   134654321100000  0122345666


Q ss_pred             eeeeecc-----eeEeeeCCCCeEee
Q psy15495        111 GLIINLR-----FALRTCLENGTWFQ  131 (158)
Q Consensus       111 gys~~~~-----~a~k~C~~nG~W~~  131 (158)
                      .|.|..+     ...+.|..+|+|..
T Consensus        96 ~~~C~~gy~l~G~~~~~C~~~g~Ws~  121 (376)
T 2aty_A           96 TFACKTNFSMNGNKSVWCQANNMWGP  121 (376)
T ss_pred             EEECCCCCEECCCcCeEECCCCEECC
Confidence            6767643     35789999999963

>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat, sushi, complement control protein, N glycosylation, multi-domain, membrane adhesion; HET: NAG MAN; 2.70A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A

Probab=84.77  E-value=0.24  Score=40.15  Aligned_cols=83  Identities=16%  Similarity=0.146  Sum_probs=46.0

Q ss_pred             CCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHh----hhceecceeeeeeeecc
Q psy15495         42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLF----LSCCFNGKKNGLIINLR  117 (158)
Q Consensus        42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~----~~~ly~gytvgys~~~~  117 (158)
                      .|++|...|..   +|.-.|...+.|..+|+|...|    .-.. ..|.......-..+    ...+..+-+|.|.|..+
T Consensus       147 ~g~~v~y~C~~---Gy~l~G~~~~~C~~~G~Ws~~P----~C~~-v~C~~p~~~~nG~~~~~~~~~~~~g~~v~~~C~~G  218 (319)
T 1qub_A          147 YRDTAVFECLP---QHAMFGNDTITCTTHGNWTKLP----ECRE-VKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDG  218 (319)
T ss_dssp             TTCEEEEEECT---TEEEESCSEEEBCTTSSBSCCC----EEEE-CEECCCCCCTTEEEECCSCSSEETTCEEEEEECTT
T ss_pred             cCCEEEEEeCC---CceecCCCeEEECCCCeECCCC----ceec-cCCCCCCCCCCCeEecCCCCccccCCEEEEEcCCC
Confidence            46666666764   3333567799999999997311    1001 23543321100000    01223456666767643


Q ss_pred             -----eeEeeeCCCCeEeec
Q psy15495        118 -----FALRTCLENGTWFQH  132 (158)
Q Consensus       118 -----~a~k~C~~nG~W~~~  132 (158)
                           ...+.|..+|+|...
T Consensus       219 y~l~G~~~~~C~~~G~Ws~~  238 (319)
T 1qub_A          219 YSLDGPEEIECTKLGNWSAM  238 (319)
T ss_dssp             EEESSCSEEEBCTTSSBSCC
T ss_pred             CEECCCCCeEECCCCcCCCC
Confidence                 347899999999753

>3o8e_B Membrane cofactor protein; short consensus repeat, complement control protein, fiber KN virus-receptor interaction, cell adhesion-immunity complex; HET: NAG; 2.84A {Homo sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M*

Probab=81.65  E-value=0.72  Score=35.84  Aligned_cols=85  Identities=12%  Similarity=0.010  Sum_probs=46.3

Q ss_pred             CCceEEecCCccc--cccccccceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHhh----hceecceeeeeeee
Q psy15495         42 AGETARTPCPNFI--VGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFL----SCCFNGKKNGLIIN  115 (158)
Q Consensus        42 ~G~~v~~~CP~~~--~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~----~~ly~gytvgys~~  115 (158)
                      .|++|...|..-.  .+|.-.|...+.|..+|+|...+-   .-. -..|...... ...++    ..+..+-+|.|.|.
T Consensus       149 ~g~~v~y~C~~g~~~~gy~l~G~~~~~C~~~G~Ws~~~P---~C~-~v~C~~P~~~-ng~~~~~~~~~~~~g~~v~f~C~  223 (252)
T 3o8e_B          149 YLDAVTYSCDPAPGPDPFSLIGESTIYCGDNSVWSRAAP---ECK-VVKCRFPVVE-NGKQISGFGKKFYYKATVMFECD  223 (252)
T ss_dssp             TTCEEEEEECCCSSSSCCEEESCSEEEBCTTSSBSSCCC---EEE-CCCBCCCCCT-TEEEEECCCSCBCTTCEEEEEEC
T ss_pred             CCCEEEEEeCCCCCCCCeEEeCCCceEECCCCeECCCCC---EEe-eeecCCCccc-CCcEecCCCCccccCCEEEEEeC
Confidence            4777888887510  023334567899999999974110   011 1235432110 00011    12234556666666


Q ss_pred             cc-----eeEeeeCCCCeEee
Q psy15495        116 LR-----FALRTCLENGTWFQ  131 (158)
Q Consensus       116 ~~-----~a~k~C~~nG~W~~  131 (158)
                      .+     .+.+.|..+|+|..
T Consensus       224 ~Gy~l~G~~~~~C~~~g~Ws~  244 (252)
T 3o8e_B          224 KGFYLDGSDTIVCDSNSTWDP  244 (252)
T ss_dssp             TTEEEESCSEEEECTTSCEES
T ss_pred             CCCEEcCCCcEEECCCCeECC
Confidence            43     35789999999974

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=80.56  E-value=1.7  Score=37.34  Aligned_cols=84  Identities=13%  Similarity=0.192  Sum_probs=47.2

Q ss_pred             CCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHhh----hceecceeeeeeeecc
Q psy15495         42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFL----SCCFNGKKNGLIINLR  117 (158)
Q Consensus        42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~----~~ly~gytvgys~~~~  117 (158)
                      .|++|...|-.   +|.-.|...+.|..+|+|....   ..-.....|............    ..+..|-++.|.|..+
T Consensus       219 ~g~~v~~~C~~---Gy~l~G~~~~~C~~~g~Ws~~~---P~C~~~~~C~~p~~~~~g~~~~~~~~~~~~g~~v~~~C~~G  292 (551)
T 1ntl_A          219 LRDIVEFRCHP---GFIMKGASSVHCQSLNKWEPEL---PSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDG  292 (551)
T ss_pred             CCCEEEEECCC---CCEEcCCCCeEECCCCeECCCC---ccccccccCCCCCcCCCCccccCCCCCcccCCEEEEEcCCC
Confidence            57778888865   3444567789999999997321   111111246443211000000    1123455666666633


Q ss_pred             -----eeEeeeCCCCeEee
Q psy15495        118 -----FALRTCLENGTWFQ  131 (158)
Q Consensus       118 -----~a~k~C~~nG~W~~  131 (158)
                           .....|..+|.|..
T Consensus       293 y~l~G~~~~~C~~~g~W~~  311 (551)
T 1ntl_A          293 YTLEGSSQSQCQSDGSWNP  311 (551)
T ss_pred             cEecCCcceEEeCCCeECC
Confidence                 35788999999974

>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of complement pathway, regulator of complement; 2.2A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A 2qzh_A 2qzf_A

Probab=80.56  E-value=0.83  Score=35.53  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=46.7

Q ss_pred             CCceEEecCCccccccccccc-eeeeeCCCCeEEecCCCCccccccccccCcchH---HHHH-h--hhceecceeeeeee
Q psy15495         42 AGETARTPCPNFIVGFDSRRF-ALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDL---KVYL-F--LSCCFNGKKNGLII  114 (158)
Q Consensus        42 ~G~~v~~~CP~~~~~~~~~~~-a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~---~~~~-~--~~~ly~gytvgys~  114 (158)
                      .|++|...|..-+..  ..+. .++.|..+|+|...+..   -.  ..|......   .... +  -..+..|-++-|.|
T Consensus        25 ~g~~v~y~C~~Gy~~--~~G~~~~~~C~~~g~Ws~~~p~---C~--~~C~~p~~~~~g~~~~~~~~~~~~~~g~~~~y~C   97 (254)
T 1ok3_A           25 EDTVITYKCEESFVK--IPGEKDSVICLKGSQWSDIEEF---CN--RSCEVPTRLNSASLKQPYITQNYFPVGTVVEYEC   97 (254)
T ss_dssp             TTCEEEEEECTTCEE--CTTSCCEEEEETTTEECCCCCC---EE--CCCCSCCCCSSEEECTTGGGCCCCCTTCEEEEEE
T ss_pred             CCCEEEEEcCCCcEe--CCCCCCEEEeCCCCCCCCCCCc---CC--CCCCCCCCCCcccccccccccCcCCCCCEEEEEe
Confidence            699999999974321  1233 57899999999752110   00  145433211   0000 0  01122455666666


Q ss_pred             ecc-------eeEeeeCCCCeEee
Q psy15495        115 NLR-------FALRTCLENGTWFQ  131 (158)
Q Consensus       115 ~~~-------~a~k~C~~nG~W~~  131 (158)
                      ..+       ...+.|..+|.|..
T Consensus        98 ~~Gy~l~g~~~~~~~C~~~g~Ws~  121 (254)
T 1ok3_A           98 RPGYRREPSLSPKLTCLQNLKWST  121 (254)
T ss_dssp             CTTEEECTTSCCEEEBCTTSCBCC
T ss_pred             CCCceeCCCCCCeEEECCCCeECC
Confidence            633       24689999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	158
d1u34a_	119	g.76.1.1 (A:) Corticotropin releasing factor recep	9e-18
d2joda1	106	g.76.1.1 (A:17-122) Pituitary adenylate cyclase-ac	2e-16

>d1u34a_ g.76.1.1 (A:) Corticotropin releasing factor receptor 2, CRFR-2beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 119

class: Small proteins
fold: Hormone receptor domain
superfamily: Hormone receptor domain
family: Hormone receptor domain
domain: Corticotropin releasing factor receptor 2, CRFR-2beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.3 bits (177), Expect = 9e-18
 Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 23  STLYCPTMFDGW-SCWNATLAGETARTPCPNFIVGFD--SRRFALRTCLENGTWFQHPVT 79
              YC T  D   +CW  +  G     PCP +  G    + R A R CLENGTW      
Sbjct: 42  PYTYCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWAS---- 97

Query: 80  RKFWSNYTTCIDIEDLKV 97
                NY+ C  I D K 
Sbjct: 98  ---RVNYSHCEPILDDKQ 112

>d2joda1 g.76.1.1 (A:17-122) Pituitary adenylate cyclase-activating polypeptide type I receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: Small proteins
fold: Hormone receptor domain
superfamily: Hormone receptor domain
family: Hormone receptor domain
domain: Pituitary adenylate cyclase-activating polypeptide type I receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (166), Expect = 2e-16
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDS---RRFALRTCLENGTWFQHP 77
          DS+  CP M+D  +CW     GE     CP     F+         R C E+G     P
Sbjct: 33 DSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDGWSEPFP 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1u34a_	119	Corticotropin releasing factor receptor 2, CRFR-2b	99.84
d2joda1	106	Pituitary adenylate cyclase-activating polypeptide	99.81
d1u34a_	119	Corticotropin releasing factor receptor 2, CRFR-2b	98.5
d2joda1	106	Pituitary adenylate cyclase-activating polypeptide	94.57
d1elva2	68	Complement C1S protease domain {Human (Homo sapien	89.73
d2ok5a2	62	Complement factor B {Human (Homo sapiens) [TaxId:	88.75
d1ly2a2	63	Complement receptor 2, cr2 {Human (Homo sapiens) [	88.64
d2ok5a4	68	Complement factor B {Human (Homo sapiens) [TaxId:	87.09
d1quba4	60	beta2-glycoprotein I {Human (Homo sapiens) [TaxId:	86.43
d1quba2	58	beta2-glycoprotein I {Human (Homo sapiens) [TaxId:	86.4
d1g40a4	59	Complement control protein {Vaccinia virus [TaxId:	86.08
d1quba3	63	beta2-glycoprotein I {Human (Homo sapiens) [TaxId:	85.79
d2ok5a3	61	Complement factor B {Human (Homo sapiens) [TaxId:	85.38
d1zjka2	53	Complement C1R protease domains {Human (Homo sapie	83.98
d1hfia_	62	Factor H, 15th and 16th modules {Human (Homo sapie	82.97
d2o39c1	62	CD46 (membrane cofactor protein, MCP) {Human (Homo	82.45
d1q3xa2	75	Mannan-binding lectin serine protease 2 (MASP-2) d	82.01
d1ok3a1	64	Complement decay-accelerating factor (Daf, CD55) {	80.89

>d1u34a_ g.76.1.1 (A:) Corticotropin releasing factor receptor 2, CRFR-2beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Hormone receptor domain
superfamily: Hormone receptor domain
family: Hormone receptor domain
domain: Corticotropin releasing factor receptor 2, CRFR-2beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3e-22  Score=143.67  Aligned_cols=63  Identities=41%  Similarity=0.908  Sum_probs=57.2

Q ss_pred             CCCccccccc-ccCCCCCCCceEEecCCcccccc--ccccceeeeeCCCCeEEecCCCCccccccccccCcch
Q psy15495         25 LYCPTMFDGW-SCWNATLAGETARTPCPNFIVGF--DSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIED   94 (158)
Q Consensus        25 ~~C~~~wD~~-~CWp~t~~G~~v~~~CP~~~~~~--~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~   94 (158)
                      .+|+++||+| +|||+|++|++|++|||+||.++  ++.++|+|+|+.+|+|.       .|+||+.|....+
T Consensus        44 ~~C~~twD~i~~CWP~T~aG~~v~~pCP~~~~g~~~~~~~~a~R~C~~nG~W~-------~~sNYt~C~~~~~  109 (119)
T d1u34a_          44 TYCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWA-------SRVNYSHCEPILD  109 (119)
T ss_dssp             SCCCCBCCSSSCCBCCCCTTCBCCCCSSCTTSSSCCCCCCCCCCBCCTTSCCC-------SCCCCCSSSCCSS
T ss_pred             CCCCCcCCCCcccCCCCCCCCEEEecCChhhccccccccceEEEecCCCccCC-------CcCCchhcccccc
Confidence            6999999999 89999999999999999999875  57899999999999995       6899999977643

>d2joda1 g.76.1.1 (A:17-122) Pituitary adenylate cyclase-activating polypeptide type I receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Hormone receptor domain
superfamily: Hormone receptor domain
family: Hormone receptor domain
domain: Pituitary adenylate cyclase-activating polypeptide type I receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3e-21  Score=136.26  Aligned_cols=78  Identities=26%  Similarity=0.532  Sum_probs=63.3

Q ss_pred             cccccccccCCCC---CCCCCCCcccccccccCCCCCCCceEEecCCccccccc---cccceeeeeCCCCeEEecCCCCc
Q psy15495          8 SLTTLNFMFQTLS---LDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFD---SRRFALRTCLENGTWFQHPVTRK   81 (158)
Q Consensus         8 ~~~~~~~~~~~~~---~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~---~~~~a~R~C~~dG~W~~~p~t~~   81 (158)
                      .+|.+.+..+.+.   +.+..+|+++||+++|||+|++|++|+++||.+|.+|+   ..++|+|+|+.+| |..      
T Consensus        16 ~~Cle~~~~~~~~~~~~~~~~gC~~~WDg~~CWp~t~~G~~v~~~CP~~~~~~~~~~~~g~~~R~C~~~G-Ws~------   88 (106)
T d2joda1          16 AMCLEKIQRANELMGFNDSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDG-WSE------   88 (106)
T ss_dssp             HHHHHHHHHHHHHCSCTTTSCBCCCEECSSCEECCCBTTCCEEECCSCSSCCCSCCSCCSCEEECBCSSC-BCC------
T ss_pred             HHHHHHHHhcCcccCcCCCCCCCCCCcCCcccCCCCCCCCEEEecCChhhcccCCcccCCeEEEecccCc-cCC------
Confidence            4677777766542   33467899999999999999999999999999999985   3589999999999 864      


Q ss_pred             cccccc-cccCc
Q psy15495         82 FWSNYT-TCIDI   92 (158)
Q Consensus        82 ~wtnYt-~C~~~   92 (158)
                      .+++|. .|...
T Consensus        89 ~~p~y~~aC~~d  100 (106)
T d2joda1          89 PFPHYFDACGFD  100 (106)
T ss_dssp             CSSCCSSCSCSS
T ss_pred             CCCCcccccCCC
Confidence            578885 56543

>d1u34a_ g.76.1.1 (A:) Corticotropin releasing factor receptor 2, CRFR-2beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Hormone receptor domain
superfamily: Hormone receptor domain
family: Hormone receptor domain
domain: Corticotropin releasing factor receptor 2, CRFR-2beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=2.4e-08  Score=70.53  Aligned_cols=68  Identities=28%  Similarity=0.286  Sum_probs=52.8

Q ss_pred             eeCC--CCeE-EecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccc
Q psy15495         66 TCLE--NGTW-FQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNY  142 (158)
Q Consensus        66 ~C~~--dG~W-~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny  142 (158)
                      .|..  || | .+||.+.++-+.+..|+.+..          -+.+     .+.++|+|.|.+||+|       ++|+||
T Consensus        45 ~C~~twD~-i~~CWP~T~aG~~v~~pCP~~~~----------g~~~-----~~~~~a~R~C~~nG~W-------~~~sNY  101 (119)
T d1u34a_          45 YCNTTLDQ-IGTCWPQSAPGALVERPCPEYFN----------GIKY-----NTTRNAYRECLENGTW-------ASRVNY  101 (119)
T ss_dssp             CCCCBCCS-SSCCBCCCCTTCBCCCCSSCTTS----------SSCC-----CCCCCCCCBCCTTSCC-------CSCCCC
T ss_pred             CCCCcCCC-CcccCCCCCCCCEEEecCChhhc----------cccc-----cccceEEEecCCCccC-------CCcCCc
Confidence            6766  88 9 799999999889999998631          0122     2467899999999999       469999


Q ss_pred             cccccccccccccc
Q psy15495        143 TTCIDIEDLKVSTI  156 (158)
Q Consensus       143 ~~C~~~~~~~~~~~  156 (158)
                      +.|..+.+++.+..
T Consensus       102 t~C~~~~~~~~~~~  115 (119)
T d1u34a_         102 SHCEPILDDKQRKY  115 (119)
T ss_dssp             CSSSCCSSCCCCCC
T ss_pred             hhcccccccccccc
Confidence            99988877666543

>d2joda1 g.76.1.1 (A:17-122) Pituitary adenylate cyclase-activating polypeptide type I receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Hormone receptor domain
superfamily: Hormone receptor domain
family: Hormone receptor domain
domain: Pituitary adenylate cyclase-activating polypeptide type I receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0084  Score=40.51  Aligned_cols=64  Identities=14%  Similarity=0.177  Sum_probs=44.1

Q ss_pred             eeeeeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccc
Q psy15495         63 ALRTCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWS  140 (158)
Q Consensus        63 a~R~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~  140 (158)
                      ....|..  || |.+||.+.++-.....|+.+.            .++.  .....++++|.|+.|| |..      ++.
T Consensus        34 ~~~gC~~~WDg-~~CWp~t~~G~~v~~~CP~~~------------~~~~--~~~~~g~~~R~C~~~G-Ws~------~~p   91 (106)
T d2joda1          34 SSPGCPGMWDN-ITCWKPAHVGEMVLVSCPELF------------RIFN--PDQDMGVVSRNCTEDG-WSE------PFP   91 (106)
T ss_dssp             TSCBCCCEECS-SCEECCCBTTCCEEECCSCSS------------CCCS--CCSCCSCEEECBCSSC-BCC------CSS
T ss_pred             CCCCCCCCcCC-cccCCCCCCCCEEEecCChhh------------cccC--CcccCCeEEEecccCc-cCC------CCC
Confidence            4455877  88 899999998888888999863            1211  0112468999999999 632      345


Q ss_pred             cc-cccccc
Q psy15495        141 NY-TTCIDI  148 (158)
Q Consensus       141 ny-~~C~~~  148 (158)
                      +| ..|...
T Consensus        92 ~y~~aC~~d  100 (106)
T d2joda1          92 HYFDACGFD  100 (106)
T ss_dssp             CCSSCSCSS
T ss_pred             CcccccCCC
Confidence            66 488553

>d1elva2 g.18.1.1 (A:342-409) Complement C1S protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement C1S protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.13  Score=30.96  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=27.8

Q ss_pred             CCCCCceEEecCCccccccccccceeeeeCCCCeEEec
Q psy15495         39 ATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQH   76 (158)
Q Consensus        39 ~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~   76 (158)
                      .+..|.++.-.|-.-+......+...+.|..||+|...
T Consensus        19 ~~~ygs~v~y~C~~Gy~~~~~~g~~~~~C~~dG~Ws~~   56 (68)
T d1elva2          19 STLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNE   56 (68)
T ss_dssp             CCBTTCEEEEEECTTTEEEC--CCSEEEECTTSCEEBT
T ss_pred             CCCCCcEEEEEecCCceEEEecCccEEEECCCCcCcCC
Confidence            34579999999987443334467789999999999864

>d2ok5a2 g.18.1.1 (A:138-199) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.75  E-value=0.096  Score=31.06  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=26.5

Q ss_pred             CCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         40 TLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      ...|++|...|..-   |.-.|...+.|..||+|..
T Consensus        19 ~~~g~~v~y~C~~G---y~l~G~~~~~C~~~g~Ws~   51 (62)
T d2ok5a2          19 YRLEDSVTYHCSRG---LTLRGSQRRTCQEGGSWSG   51 (62)
T ss_dssp             CSTTCEEEEECCTT---CEEESCSEEEBCTTSCBSS
T ss_pred             cccCCEEEEECCCC---CEEcCCCceEECCCCcCCC
Confidence            46899999999864   4445677899999999974

>d1ly2a2 g.18.1.1 (A:67-129) Complement receptor 2, cr2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 2, cr2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.12  Score=30.74  Aligned_cols=31  Identities=19%  Similarity=0.371  Sum_probs=25.3

Q ss_pred             CCCceEEecCCccccccccccceeeeeCCCCeEE
Q psy15495         41 LAGETARTPCPNFIVGFDSRRFALRTCLENGTWF   74 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~   74 (158)
                      ..|.+|...|-.   ||.-.|...+.|..||+|.
T Consensus        23 ~~g~~v~~~C~~---Gy~l~G~~~~~C~~~g~Ws   53 (63)
T d1ly2a2          23 RHGDSVTFACKT---NFSMNGNKSVWCQANNMWG   53 (63)
T ss_dssp             ETTCEEEEEECT---TEEEESCSEEEECTTSSEE
T ss_pred             cCCCEEEEECCC---CCEEeCCCCeEECCCCcCC
Confidence            578889999975   4444678899999999997

>d2ok5a4 g.18.1.1 (A:9-76) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=0.2  Score=30.86  Aligned_cols=31  Identities=26%  Similarity=0.615  Sum_probs=25.2

Q ss_pred             CCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      .|+++.-.||.-++-|.   .++|.|..+|.|..
T Consensus        21 ~GSvL~Y~CP~G~YPyP---v~~R~C~~~G~Ws~   51 (68)
T d2ok5a4          21 EGQALEYVCPSGFYPYP---VQTRTCRSTGSWST   51 (68)
T ss_dssp             GGTEEEEECCTTEEEES---CSEEEBCTTSSBCC
T ss_pred             CCeEEEEECCCCCCCCC---ccEEEecCCCcccc
Confidence            49999999998655443   57899999999964

>d1quba4 g.18.1.1 (A:184-243) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.43  E-value=0.14  Score=29.89  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=25.3

Q ss_pred             CCCceEEecCCccccccccccceeeeeCCCCeEE
Q psy15495         41 LAGETARTPCPNFIVGFDSRRFALRTCLENGTWF   74 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~   74 (158)
                      ..|++|...|..   +|.-.|...+.|..+|+|.
T Consensus        23 ~~g~~~~y~C~~---Gy~l~G~~~~~C~~~G~Ws   53 (60)
T d1quba4          23 YYKDKATFGCHD---GYSLDGPEEIECTKLGNWS   53 (60)
T ss_dssp             ETTCEEEEEECT---TEEESSCSEEEBCTTSSBS
T ss_pred             cCCCEEEEECCC---CCEEcCCCceEECCCCcCC
Confidence            368999999975   4555678899999999995

>d1quba2 g.18.1.1 (A:63-120) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.40  E-value=0.19  Score=29.23  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=26.1

Q ss_pred             CCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         40 TLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      ...|.+|...|-.   ||.-.|...+.|..+|+|..
T Consensus        19 ~~~g~~v~y~C~~---Gy~l~G~~~~~C~~~g~Ws~   51 (58)
T d1quba2          19 FEYPNTISFSCNT---GFYLNGADSAKCTEEGKWSP   51 (58)
T ss_dssp             SBTTCEEEEEECT---TEEEESCSEEEECTTSCEES
T ss_pred             cccCCEEEEEcCC---CCEEcCCCCeEECCCCeECC
Confidence            4568999999975   44446778999999999974

>d1g40a4 g.18.1.1 (A:185-243) Complement control protein {Vaccinia virus [TaxId: 10245]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement control protein
species: Vaccinia virus [TaxId: 10245]

Probab=86.08  E-value=0.097  Score=30.63  Aligned_cols=32  Identities=19%  Similarity=0.377  Sum_probs=25.6

Q ss_pred             CCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         41 LAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      ..|++|...|..   +|.-.|...+.|..||+|..
T Consensus        22 ~~g~~v~~~C~~---Gy~l~G~~~~~C~~~G~Ws~   53 (59)
T d1g40a4          22 SYNDNVDFKCKY---GYKLSGSSSSTCSPGNTWKP   53 (59)
T ss_dssp             CSCCCCCEEECT---TCCEESCSSCCEETTTEESS
T ss_pred             cCCCEEEEEcCC---CCEEcCCCceEECCCCEECC
Confidence            578889999976   45456778899999999973

>d1quba3 g.18.1.1 (A:121-183) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=0.14  Score=30.10  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=24.3

Q ss_pred             CCCceEEecCCccccccccccceeeeeCCCCeEE
Q psy15495         41 LAGETARTPCPNFIVGFDSRRFALRTCLENGTWF   74 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~   74 (158)
                      ..|.+|...|-.   +|.-.|...+.|..+|+|.
T Consensus        26 ~~g~~v~y~C~~---Gy~l~G~~~~~C~~~G~Ws   56 (63)
T d1quba3          26 LYRDTAVFECLP---QHAMFGNDTITCTTHGNWT   56 (63)
T ss_dssp             ETTCEEEEEECT---TEEEESCSEEEBCTTSSBS
T ss_pred             ecCCEEEEEcCC---CCEEcCCCeEEEecCCeEC
Confidence            468888888865   4444678899999999995

>d2ok5a3 g.18.1.1 (A:77-137) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.38  E-value=0.18  Score=29.58  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=25.6

Q ss_pred             CCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         41 LAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      ..|++|...|-.-   |.-.|...+.|..+|+|..
T Consensus        21 ~~g~~v~y~C~~G---y~l~G~~~~~C~~~g~Ws~   52 (61)
T d2ok5a3          21 NVSDEISFHCYDG---YTLRGSANRTCQVNGRWSG   52 (61)
T ss_dssp             ETTCEEEEEECTT---CEEESCSEEEBCTTSCBSS
T ss_pred             cCCCEEEEECCCC---CEEeCCCeeEECCCCeECC
Confidence            5799999999764   4445778999999999974

>d1zjka2 g.18.1.1 (A:311-363) Complement C1R protease domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement C1R protease domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=0.25  Score=28.52  Aligned_cols=34  Identities=12%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             CCceEEecCCccccccc---cccceeeeeCCCCeEEe
Q psy15495         42 AGETARTPCPNFIVGFD---SRRFALRTCLENGTWFQ   75 (158)
Q Consensus        42 ~G~~v~~~CP~~~~~~~---~~~~a~R~C~~dG~W~~   75 (158)
                      .|.+|...|-.-+....   ..|..++.|..||+|..
T Consensus        10 ~~d~V~f~C~~GY~L~~~~~~~gs~~~~C~~~G~Ws~   46 (53)
T d1zjka2          10 LKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDR   46 (53)
T ss_dssp             TTCEEEEEECTTEEEEETTEECSCCEEEBCSSSSBSS
T ss_pred             CCCEEEEEeCCCCeeccccccCCcceeEECCCCcCCC
Confidence            68899999987433221   24778999999999974

>d1hfia_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Factor H, 15th and 16th modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.97  E-value=0.51  Score=27.57  Aligned_cols=30  Identities=27%  Similarity=0.525  Sum_probs=24.6

Q ss_pred             CCCceEEecCCccccccccccceeeeeCCCCeEE
Q psy15495         41 LAGETARTPCPNFIVGFDSRRFALRTCLENGTWF   74 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~   74 (158)
                      ..|++|+..|-.   +|.-.|.+.+.|. ||+|.
T Consensus        27 ~~g~~v~y~C~~---Gy~l~G~~~~~C~-~G~Ws   56 (62)
T d1hfia_          27 AHGTKLSYTCEG---GFRISEENETTCY-MGKWS   56 (62)
T ss_dssp             CTTCEEEEECCT---TCCBCSSCEEEEE-TTEEC
T ss_pred             cCCCEEEEECCC---CCEECCCCeeEeC-CCccC
Confidence            469999999965   5555788999997 89996

>d2o39c1 g.18.1.1 (C:1-62) CD46 (membrane cofactor protein, MCP) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: CD46 (membrane cofactor protein, MCP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.45  E-value=0.32  Score=28.60  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=24.3

Q ss_pred             CCCceEEecCCccccccccccceeeeeCCCCeEE
Q psy15495         41 LAGETARTPCPNFIVGFDSRRFALRTCLENGTWF   74 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~   74 (158)
                      ..|++|.-.|-.-+. ....+..++.|..||+|.
T Consensus        21 ~~g~~v~Y~C~~Gy~-l~~~~~~~i~C~~ng~WS   53 (62)
T d2o39c1          21 EIGERVDYKCKKGYF-YIPPLATHTICDRNHTWL   53 (62)
T ss_dssp             CTTCEEEEEECTTEE-ECSSSCSEEECCSSSSCC
T ss_pred             CCCCEEEEEeCCCcE-ECCCCCCEEEECCCCEEC
Confidence            579999999975322 123456789999999996

>d1q3xa2 g.18.1.1 (A:366-440) Mannan-binding lectin serine protease 2 (MASP-2) domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Mannan-binding lectin serine protease 2 (MASP-2) domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.01  E-value=0.43  Score=29.07  Aligned_cols=35  Identities=14%  Similarity=0.198  Sum_probs=25.7

Q ss_pred             CCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         40 TLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        40 t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      ...|++|.-.|-.-+.. ...+...|.|..||+|..
T Consensus        21 ~~ygs~v~Y~C~~Gy~~-~l~G~~~~~C~~~G~Ws~   55 (75)
T d1q3xa2          21 TTYKAVIQYSCEETFYT-MKVNDGKYVCEADGFWTS   55 (75)
T ss_dssp             CBTTCEEEEEECTTTEE-EESCCSEEEECTTSCEEE
T ss_pred             cccCCEEEEeecCCcee-eccCCceEEECCCCcCCC
Confidence            34799999999763211 224677899999999985

>d1ok3a1 g.18.1.1 (A:1-64) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement decay-accelerating factor (Daf, CD55)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.89  E-value=0.49  Score=27.81  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=25.1

Q ss_pred             CCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495         41 LAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ   75 (158)
Q Consensus        41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~   75 (158)
                      .+|++|.-.|-.-+.. ...+..++.|..||+|..
T Consensus        24 ~~g~~v~Y~C~~Gy~~-~~~~~~~~~C~~ng~Ws~   57 (64)
T d1ok3a1          24 PEDTVITYKCEESFVK-IPGEKDSVICLKGSQWSD   57 (64)
T ss_dssp             ETTCEEEEEECTTCEE-CTTSCCEEEEETTTEECC
T ss_pred             cCCCEEEEEeCCCcEE-ccCCcccEEeCCCCEECC
Confidence            3899999999764322 224567889999999974