Psyllid ID: psy15525

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MAHQFFKAIFKFPSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAHQFFKAIFKFPSIKAEEEELNTAQMAQQFFKAIFkfpsikaeeeelvdpqvtlrekcseAHCTKYLDKLQQCNdrvnskqnttESCYEELIDYAHCVDHCVAhdihkylk
Flexible Loop (DISEMBL)
MAHQFFKAIFKFPSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK
Low Complexity Region (SEG)
MAHQFFKAIFKFPSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK
Disordered region (IsUnstruct)
****FFKAIFKFPSIKA****LNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKY**
Disordered Region (DISOPRED)
***QFFKAIFKFPSIKAEEEELNTAQMAQQFFKAIFKFPSIKAE*EELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSK**T*ESCYEELIDYAHCVDHCVAHDIHKYLK
Disordered Region (DISEMBL)
MAHQFFKAIFKFPSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK
Disordered Region (DISPRO)
*AHQFFKAIFKFPSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHQFFKAIFKFPSIKAEEEELNTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
P00126	91	Cytochrome b-c1 complex s	yes	N/A	0.580	0.714	0.469	7e-11
Q5M9I5	89	Cytochrome b-c1 complex s	yes	N/A	0.580	0.730	0.484	9e-11
P99028	89	Cytochrome b-c1 complex s	yes	N/A	0.580	0.730	0.484	1e-10
P07919	91	Cytochrome b-c1 complex s	yes	N/A	0.580	0.714	0.469	2e-10
Q8SPH5	91	Cytochrome b-c1 complex s	N/A	N/A	0.580	0.714	0.454	7e-10
P48504	69	Cytochrome b-c1 complex s	N/A	N/A	0.598	0.971	0.367	5e-06

>sp|P00126|QCR6_BOVIN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Bos taurus GN=UQCRH PE=1 SV=2

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 48  LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE+C +   C K  ++L+ C++RV+S+  T E C EEL+D+ H  DHCVAH 
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 85

Query: 107 IHKYLK 112
           +   LK
Sbjct: 86  LFNSLK 91

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.
Bos taurus (taxid: 9913)

>sp|Q5M9I5|QCR6_RAT Cytochrome b-c1 complex subunit 6, mitochondrial OS=Rattus norvegicus GN=Uqcrh PE=3 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 48  LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE C +   C K  ++L+ C+ RV+S+  T E C EEL D+ H  DHCVAH 
Sbjct: 24  LVDPLTTVREHCEQLEKCVKARERLESCDRRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83

Query: 107 IHKYLK 112
           + K LK
Sbjct: 84  LFKSLK 89

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Rattus norvegicus (taxid: 10116)

>sp|P99028|QCR6_MOUSE Cytochrome b-c1 complex subunit 6, mitochondrial OS=Mus musculus GN=Uqcrh PE=1 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 48  LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE C +   C K  ++L+ C++RV+S+  T E C EEL D+ H  DHCVAH 
Sbjct: 24  LVDPLTTVREHCEQLEKCVKARERLELCDNRVSSRSQTEEDCTEELFDFLHARDHCVAHK 83

Query: 107 IHKYLK 112
           + K LK
Sbjct: 84  LFKNLK 89

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Mus musculus (taxid: 10090)

>sp|P07919|QCR6_HUMAN Cytochrome b-c1 complex subunit 6, mitochondrial OS=Homo sapiens GN=UQCRH PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 48  LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE+C +   C K  ++L+ C++RV+S+ +T E C EEL D+ H  DHCVAH 
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHCVAHK 85

Query: 107 IHKYLK 112
           +   LK
Sbjct: 86  LFNNLK 91

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Homo sapiens (taxid: 9606)

>sp|Q8SPH5|QCR6_MACFA Cytochrome b-c1 complex subunit 6, mitochondrial OS=Macaca fascicularis GN=UQCRH PE=3 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 48  LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE+C +   C K  ++L+ C+ RV+S+  T E C EEL+D+ H  DHCVA+ 
Sbjct: 26  LVDPLTTVREQCEQLEKCVKARERLELCDKRVSSRSRTEEDCTEELLDFLHARDHCVAYK 85

Query: 107 IHKYLK 112
           +   LK
Sbjct: 86  LFNNLK 91

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Macaca fascicularis (taxid: 9541)

>sp|P48504|QCR6_SOLTU Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 45  EEELVDPQVTLREKCSEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVA 104
           +EE+VDP+ TL   C +  C + L + Q C  RV   ++  + C  +  DY HC+D CVA
Sbjct: 3   DEEVVDPKATLEVSC-KPKCVRQLKEYQACTKRVEGDESGHKHCTGQYFDYWHCIDKCVA 61

Query: 105 HDIHKYLK 112
             +  +LK
Sbjct: 62  AKLFDHLK 69

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1.

Solanum tuberosum (taxid: 4113)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
157127313	107	hypothetical protein AaeL_AAEL010801 [Ae	0.785	0.822	0.516	6e-19
328778987	87	PREDICTED: cytochrome b-c1 complex subun	0.732	0.942	0.576	9e-19
380013048	87	PREDICTED: cytochrome b-c1 complex subun	0.732	0.942	0.564	1e-18
350408009	87	PREDICTED: cytochrome b-c1 complex subun	0.669	0.862	0.592	4e-18
157127311	86	hypothetical protein AaeL_AAEL010801 [Ae	0.741	0.965	0.534	4e-18
346465705	125	hypothetical protein [Amblyomma maculatu	0.660	0.592	0.623	5e-18
340721814	87	PREDICTED: cytochrome b-c1 complex subun	0.669	0.862	0.592	9e-18
427796993	121	Putative ubiquinol-cytochrome c reductas	0.660	0.611	0.610	3e-17
198454570	85	ucrh [Drosophila pseudoobscura pseudoobs	0.723	0.952	0.542	4e-17
91085447	88	PREDICTED: similar to AGAP002245-PA [Tri	0.732	0.931	0.569	6e-17

>gi|157127313|ref|XP_001654918.1| hypothetical protein AaeL_AAEL010801 [Aedes aegypti] gi|403183143|gb|EJY57884.1| AAEL010801-PB [Aedes aegypti]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 63/91 (69%), Gaps = 3/91 (3%)

Query: 23  NTAQMAQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSK 81
           N    A++F+ ++F  P++KA+EEE+VDPQV LREKC+E     +  +K Q CNDRVNS+
Sbjct: 19  NGTMAARRFWASLF--PTVKAQEEEVVDPQVVLREKCAEHGTAPQLWEKYQACNDRVNSR 76

Query: 82  QNTTESCYEELIDYAHCVDHCVAHDIHKYLK 112
            NTTE+C EEL DY H +DHCV   +   LK
Sbjct: 77  SNTTETCVEELFDYLHELDHCVTKTLFSKLK 107

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778987|ref|XP_001122063.2| PREDICTED: cytochrome b-c1 complex subunit 6, mitochondrial-like [Apis mellifera]

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 59/85 (69%), Gaps = 3/85 (3%)

Query: 31  FFKAIFK--FPSIKAEEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTES 87
           F + IFK   P++KAE+EE+VDPQ  LREKCS    C+   DKL  CNDRVNS++ T E+
Sbjct: 3   FLQNIFKRYIPTVKAEDEEIVDPQKLLREKCSRLPKCSAMQDKLNTCNDRVNSRKQTEET 62

Query: 88  CYEELIDYAHCVDHCVAHDIHKYLK 112
           C EELIDY  CVDHCVA  +   LK
Sbjct: 63  CMEELIDYVECVDHCVAKTLFTKLK 87

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013048|ref|XP_003690582.1| PREDICTED: cytochrome b-c1 complex subunit 6, mitochondrial-like [Apis florea]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/85 (56%), Positives = 59/85 (69%), Gaps = 3/85 (3%)

Query: 31  FFKAIFK--FPSIKAEEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTES 87
           F + IFK   P++KAE+EE+VDPQ  LREKCS    C+   DKL  CNDRVNS++ T E+
Sbjct: 3   FLQNIFKRYIPTVKAEDEEIVDPQKLLREKCSRLPKCSAMQDKLNTCNDRVNSRKQTEET 62

Query: 88  CYEELIDYAHCVDHCVAHDIHKYLK 112
           C EELIDY  C+DHCVA  +   LK
Sbjct: 63  CMEELIDYVECIDHCVAKTLFTKLK 87

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408009|ref|XP_003488270.1| PREDICTED: cytochrome b-c1 complex subunit 6, mitochondrial-like [Bombus impatiens]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 38  FPSIKAEEEELVDPQVTLREKCS-EAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYA 96
            P++KAEEEEL+DPQ  LRE+CS +  CT   +KL  CN RVNS+ NT E+C EELIDY 
Sbjct: 12  MPTVKAEEEELIDPQKILRERCSRQPKCTSLQEKLDTCNQRVNSRSNTEETCMEELIDYV 71

Query: 97  HCVDHCVAHDIHKYLK 112
            CVDHCVA  +   LK
Sbjct: 72  ECVDHCVAKTLFSKLK 87

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127311|ref|XP_001654917.1| hypothetical protein AaeL_AAEL010801 [Aedes aegypti] gi|94468920|gb|ABF18309.1| mitochondrial ubiquinol-cytochrome c reductase hinge protein [Aedes aegypti] gi|108872955|gb|EAT37180.1| AAEL010801-PA [Aedes aegypti]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 62/86 (72%), Gaps = 3/86 (3%)

Query: 28  AQQFFKAIFKFPSIKAEEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTE 86
           A++F+ ++F  P++KA+EEE+VDPQV LREKC+E     +  +K Q CNDRVNS+ NTTE
Sbjct: 3   ARRFWASLF--PTVKAQEEEVVDPQVVLREKCAEHGTAPQLWEKYQACNDRVNSRSNTTE 60

Query: 87  SCYEELIDYAHCVDHCVAHDIHKYLK 112
           +C EEL DY H +DHCV   +   LK
Sbjct: 61  TCVEELFDYLHELDHCVTKTLFSKLK 86

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346465705|gb|AEO32697.1| hypothetical protein [Amblyomma maculatum]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 57/77 (74%), Gaps = 3/77 (3%)

Query: 39  PSIKA--EEEELVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDY 95
           P +KA  EEEELVDP  TL+EKC   + C+ Y DKLQ+C DRVNS+  T E+C EEL D+
Sbjct: 49  PVVKASDEEEELVDPMDTLKEKCRAGNKCSAYGDKLQECTDRVNSRSQTLETCTEELFDF 108

Query: 96  AHCVDHCVAHDIHKYLK 112
            HCVDHCVA DI K+LK
Sbjct: 109 LHCVDHCVAKDIFKHLK 125

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721814|ref|XP_003399309.1| PREDICTED: cytochrome b-c1 complex subunit 6, mitochondrial-like [Bombus terrestris]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 38  FPSIKAEEEELVDPQVTLREKCS-EAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYA 96
            P++KAEEEEL+DPQ  LRE+CS +  CT   +KL  CN RVNS+ NT E+C EELIDY 
Sbjct: 12  MPTVKAEEEELIDPQKILRERCSRQPKCTSLQEKLDICNQRVNSRSNTEETCMEELIDYV 71

Query: 97  HCVDHCVAHDIHKYLK 112
            CVDHCVA  +   LK
Sbjct: 72  ECVDHCVAKTLFSKLK 87

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427796993|gb|JAA63948.1| Putative ubiquinol-cytochrome c reductase hinge protein, partial [Rhipicephalus pulchellus]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 3/77 (3%)

Query: 39  PSIKA--EEEELVDPQVTLREKC-SEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDY 95
           P +KA  EEEELVDP  TLREKC +E  C  + +KLQ+CNDRVNS+  T E+C EEL D+
Sbjct: 45  PVVKAADEEEELVDPLDTLREKCRAEGKCASFGEKLQECNDRVNSRSQTLETCEEELFDF 104

Query: 96  AHCVDHCVAHDIHKYLK 112
            HCVDHC + DI K+LK
Sbjct: 105 LHCVDHCASKDIFKHLK 121

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198454570|ref|XP_002137903.1| ucrh [Drosophila pseudoobscura pseudoobscura] gi|198132854|gb|EDY68461.1| ucrh [Drosophila pseudoobscura pseudoobscura]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 2/83 (2%)

Query: 32  FKAIFKFPSIKAE-EEELVDPQVTLREKC-SEAHCTKYLDKLQQCNDRVNSKQNTTESCY 89
           F+++F  P +KA+ EEELVDPQ  LREKC S+ H     +K Q+CNDRVN +  TTE+C 
Sbjct: 3   FRSLFAMPVVKADDEEELVDPQAVLREKCQSKGHIESLYNKYQECNDRVNGRSKTTETCM 62

Query: 90  EELIDYAHCVDHCVAHDIHKYLK 112
           EEL DY   +DHCVAH +   LK
Sbjct: 63  EELFDYVAELDHCVAHSLFSKLK 85

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085447|ref|XP_969197.1| PREDICTED: similar to AGAP002245-PA [Tribolium castaneum] gi|270009213|gb|EFA05661.1| hypothetical protein TcasGA2_TC014895 [Tribolium castaneum]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 58/86 (67%), Gaps = 4/86 (4%)

Query: 31  FFKAIFKFPSIKA---EEEELVDPQVTLREKCSEA-HCTKYLDKLQQCNDRVNSKQNTTE 86
           F K I K P +KA   E+EELVDPQ  LR+KC+E  HC K  +K Q CNDRVNS+  TTE
Sbjct: 3   FEKFIPKLPKVKAQDEEDEELVDPQQVLRDKCNETEHCQKLHEKYQACNDRVNSRSKTTE 62

Query: 87  SCYEELIDYAHCVDHCVAHDIHKYLK 112
           +C EEL D+ H VDHCV  D+   LK
Sbjct: 63  NCSEELFDWLHAVDHCVTKDLFSKLK 88

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0260008	85	Ucrh "Ubiquinol-cytochrome C r	0.723	0.952	0.493	2.8e-18
FB|FBgn0050354	86	CG30354 [Drosophila melanogast	0.660	0.860	0.532	2.5e-17
ZFIN|ZDB-GENE-051030-93	90	uqcrh "ubiquinol-cytochrome c	0.616	0.766	0.514	1.8e-16
UNIPROTKB|P00126	91	UQCRH "Cytochrome b-c1 complex	0.616	0.758	0.5	2e-15
MGI|MGI:1913826	89	Uqcrh "ubiquinol-cytochrome c	0.616	0.775	0.514	2e-15
UNIPROTKB|P07919	91	UQCRH "Cytochrome b-c1 complex	0.616	0.758	0.5	2.6e-15
RGD|1305987	89	Uqcrh "ubiquinol-cytochrome c	0.616	0.775	0.514	2.6e-15
UNIPROTKB|E2RR27	91	UQCRH "Cytochrome b-c1 complex	0.616	0.758	0.5	5.4e-15
UNIPROTKB|F1NHW5	74	UQCRH "Cytochrome b-c1 complex	0.616	0.932	0.5	6.9e-15
UNIPROTKB|F1S3W0	91	UQCRH "Cytochrome b-c1 complex	0.616	0.758	0.5	6.9e-15

FB|FBgn0260008 Ucrh "Ubiquinol-cytochrome C reductase complex 11 kDa protein" [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 41/83 (49%), Positives = 56/83 (67%)

Query:    32 FKAIFKFPSIKAEEEE-LVDPQVTLREKC-SEAHCTKYLDKLQQCNDRVNSKQNTTESCY 89
             F+  F  P+++A++EE LVDPQ  LREKC ++ H     +K Q+CNDRVN +  TTE+C 
Sbjct:     3 FRNWFSLPAVRADDEEDLVDPQAVLREKCQAKGHIESLYNKYQECNDRVNGRSKTTETCI 62

Query:    90 EELIDYAHCVDHCVAHDIHKYLK 112
             EEL DY   +DHCV+H +   LK
Sbjct:    63 EELFDYVAELDHCVSHSLFTKLK 85

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

FB|FBgn0050354 CG30354 [Drosophila melanogaster (taxid:7227)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 41/77 (53%), Positives = 52/77 (67%)

Query:    39 PSIKAE--EEELVDPQVTLREKC-SEAHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDY 95
             P +KA+  E+ELVDPQ  LREKC ++ H     +K Q+CNDRVN K  TTE+C EEL D+
Sbjct:    10 PVLKADDDEKELVDPQAALREKCQAKGHIASLYNKYQECNDRVNGKSKTTETCMEELFDF 69

Query:    96 AHCVDHCVAHDIHKYLK 112
                +DHCVAH +   LK
Sbjct:    70 VAELDHCVAHSLFSKLK 86

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

ZFIN|ZDB-GENE-051030-93 uqcrh "ubiquinol-cytochrome c reductase hinge protein" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 36/70 (51%), Positives = 47/70 (67%)

Query:    44 EEEELVDPQVTLREKCSEA-HCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
             EEEE+VDP  T+R+KC E  HC    ++L+ C  RVNS+  TTE C EEL D+ H  DHC
Sbjct:    21 EEEEMVDPLETVRQKCEETEHCAHARERLESCETRVNSRSQTTEDCTEELFDFLHARDHC 80

Query:   103 VAHDIHKYLK 112
             VAH + + +K
Sbjct:    81 VAHKVFQSIK 90

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|P00126 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query:    44 EEEELVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
             EEEELVDP  T+RE+C +   C K  ++L+ C++RV+S+  T E C EEL+D+ H  DHC
Sbjct:    22 EEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHC 81

Query:   103 VAHDIHKYLK 112
             VAH +   LK
Sbjct:    82 VAHKLFNSLK 91

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

MGI|MGI:1913826 Uqcrh "ubiquinol-cytochrome c reductase hinge protein" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 36/70 (51%), Positives = 47/70 (67%)

Query:    44 EEEELVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
             EEEELVDP  T+RE C +   C K  ++L+ C++RV+S+  T E C EEL D+ H  DHC
Sbjct:    20 EEEELVDPLTTVREHCEQLEKCVKARERLELCDNRVSSRSQTEEDCTEELFDFLHARDHC 79

Query:   103 VAHDIHKYLK 112
             VAH + K LK
Sbjct:    80 VAHKLFKNLK 89

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISO

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 35/70 (50%), Positives = 48/70 (68%)

Query:    44 EEEELVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
             EEEELVDP  T+RE+C +   C K  ++L+ C++RV+S+ +T E C EEL D+ H  DHC
Sbjct:    22 EEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHC 81

Query:   103 VAHDIHKYLK 112
             VAH +   LK
Sbjct:    82 VAHKLFNNLK 91

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005746 "mitochondrial respiratory chain" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=TAS

GO:0006119 "oxidative phosphorylation" evidence=TAS

GO:0009060 "aerobic respiration" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|1305987 Uqcrh "ubiquinol-cytochrome c reductase hinge protein" [Rattus norvegicus (taxid:10116)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 36/70 (51%), Positives = 46/70 (65%)

Query:    44 EEEELVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
             EEEELVDP  T+RE C +   C K  ++L+ C+ RV+S+  T E C EEL D+ H  DHC
Sbjct:    20 EEEELVDPLTTVREHCEQLEKCVKARERLESCDRRVSSRSQTEEDCTEELFDFLHARDHC 79

Query:   103 VAHDIHKYLK 112
             VAH + K LK
Sbjct:    80 VAHKLFKSLK 89

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IC

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|E2RR27 UQCRH "Cytochrome b-c1 complex subunit 6" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 35/70 (50%), Positives = 46/70 (65%)

Query:    44 EEEELVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
             EEEELVDP  T+RE+C +   C K  ++L+ C+ RV+S+  T E C EEL D+ H  DHC
Sbjct:    22 EEEELVDPLTTVREQCEQLEKCVKARERLELCDQRVSSRSQTEEDCTEELFDFLHARDHC 81

Query:   103 VAHDIHKYLK 112
             VAH +   LK
Sbjct:    82 VAHKLFNSLK 91

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

UNIPROTKB|F1NHW5 UQCRH "Cytochrome b-c1 complex subunit 6" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 35/70 (50%), Positives = 46/70 (65%)

Query:    44 EEEELVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
             EEEELVDP  T+RE C +   C K  ++L+ C+ RV+S+ +T E C EEL D+ H  DHC
Sbjct:     5 EEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHC 64

Query:   103 VAHDIHKYLK 112
             VAH +   LK
Sbjct:    65 VAHKLFNKLK 74

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|F1S3W0 UQCRH "Cytochrome b-c1 complex subunit 6" [Sus scrofa (taxid:9823)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 35/70 (50%), Positives = 46/70 (65%)

Query:    44 EEEELVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
             EEEELVDP  T+RE+C +   C K  ++L+ C+ RV+S+  T E C EEL D+ H  DHC
Sbjct:    22 EEEELVDPLTTVREQCEQIEKCIKARERLELCDQRVSSRSQTEEDCTEELFDFLHARDHC 81

Query:   103 VAHDIHKYLK 112
             VAH +   LK
Sbjct:    82 VAHKLFNSLK 91

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
pfam02320	65	pfam02320, UCR_hinge, Ubiquinol-cytochrome C reduc	3e-23

>gnl|CDD|190277 pfam02320, UCR_hinge, Ubiquinol-cytochrome C reductase hinge protein

 Score = 84.3 bits (209), Expect = 3e-23
 Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 49  VDPQVTLREKCSEA-HCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDI 107
           VDP+ TLRE+C     C K   + Q+C +RVNS+ +T E C EEL DY HC+DHCVA  +
Sbjct: 1   VDPKDTLREECKNKEKCVKAKHEYQECVERVNSRSSTKEDCTEELFDYLHCLDHCVAPKL 60

Query: 108 HKYLK 112
              LK
Sbjct: 61  FNKLK 65

The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PF02320	65	UCR_hinge: Ubiquinol-cytochrome C reductase hinge	100.0
KOG4763|consensus	77		99.96
PF05254	68	UPF0203: Uncharacterised protein family (UPF0203);	94.75
KOG3481|consensus	87		92.15
PLN03079	91	Uncharacterized protein At4g33100; Provisional	91.9
PF10200	96	Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15k	81.95

>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []

Probab=100.00  E-value=3.7e-34  Score=189.46  Aligned_cols=64  Identities=50%  Similarity=0.940  Sum_probs=58.2

Q ss_pred             CCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525         49 VDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK  112 (112)
Q Consensus        49 vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK  112 (112)
                      |||++.||++|++ ++|++++++|++|++||+++++++|||+||||||||||||||||+||++||
T Consensus         1 VDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCvD~CvapklF~~LK   65 (65)
T PF02320_consen    1 VDPKDALREECKETPKCAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCVDHCVAPKLFKKLK   65 (65)
T ss_dssp             --HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHHHHHHHHHHGGC--
T ss_pred             CCchHHHHHHhccchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence            7999999999977 999999999999999999999999999999999999999999999999998

The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....

>KOG4763|consensus

Probab=99.96  E-value=2.8e-30  Score=175.81  Aligned_cols=67  Identities=46%  Similarity=0.826  Sum_probs=65.0

Q ss_pred             cccCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525         46 EELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK  112 (112)
Q Consensus        46 EE~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK  112 (112)
                      |..|||+..+||.|++ ++|++....|++|++||+|++.|+++|++||||||||+|||||||||++||
T Consensus        10 E~vvDplt~~rE~C~~~~kcvK~~~~l~~C~~rv~s~s~tee~Ct~e~fDy~h~~DhCva~KlFa~LK   77 (77)
T KOG4763|consen   10 ELVVDPLTYVRESCKQLPKCVKPLLELQACVKRVQSRSSTEEHCTGEYFDYWHCLDHCVAPKLFANLK   77 (77)
T ss_pred             hhhccHHHHHHHHHHhhHHHhhHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            5567999999999999 999999999999999999999999999999999999999999999999998

>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins

Probab=94.75  E-value=0.064  Score=35.85  Aligned_cols=42  Identities=29%  Similarity=0.623  Sum_probs=33.4

Q ss_pred             hhhhhHHHHHHHHHHhhhc----CCC-CCCChhhHHHHHHHhhhhhh
Q psy15525         62 AHCTKYLDKLQQCNDRVNS----KQN-TTESCYEELIDYAHCVDHCV  103 (112)
Q Consensus        62 ~~C~~~~~~yeeC~eRV~s----~~~-t~E~C~eE~fDl~hCvD~Cv  103 (112)
                      +.|..++..|+.|-.+==+    +++ ....|.+++-+|..||..=.
T Consensus         7 ~eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~al   53 (68)
T PF05254_consen    7 PECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQKAL   53 (68)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHH
Confidence            7899999999999888532    233 44699999999999986543

In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].

>KOG3481|consensus

Probab=92.15  E-value=0.3  Score=34.55  Aligned_cols=42  Identities=24%  Similarity=0.521  Sum_probs=34.9

Q ss_pred             hhhhhHHHHHHHHHHh-----hhcCCCCCCChhhHHHHHHHhhhhhh
Q psy15525         62 AHCTKYLDKLQQCNDR-----VNSKQNTTESCYEELIDYAHCVDHCV  103 (112)
Q Consensus        62 ~~C~~~~~~yeeC~eR-----V~s~~~t~E~C~eE~fDl~hCvD~Cv  103 (112)
                      +.|.+++..|+.|-.+     +-.+....+.|+.++-.|..||..=.
T Consensus        11 ~eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal   57 (87)
T KOG3481|consen   11 PECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKAL   57 (87)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHH
Confidence            6899999999999766     33455678999999999999987654

>PLN03079 Uncharacterized protein At4g33100; Provisional

Probab=91.90  E-value=0.28  Score=34.89  Aligned_cols=43  Identities=23%  Similarity=0.485  Sum_probs=33.6

Q ss_pred             hhhhhHHHHHHHHHHhhhc----CCCC-CCChhhHHHHHHHhhhhhhh
Q psy15525         62 AHCTKYLDKLQQCNDRVNS----KQNT-TESCYEELIDYAHCVDHCVA  104 (112)
Q Consensus        62 ~~C~~~~~~yeeC~eRV~s----~~~t-~E~C~eE~fDl~hCvD~CvA  104 (112)
                      +.|..++..|+.|=.|==+    +++. +..|.+++-.|..||..=..
T Consensus        16 ~eCtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~aL~   63 (91)
T PLN03079         16 SPCAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEHLE   63 (91)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHH
Confidence            5699999999999888533    3444 57899999999999865443

>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I

Probab=81.95  E-value=2.1  Score=30.52  Aligned_cols=39  Identities=23%  Similarity=0.606  Sum_probs=33.3

Q ss_pred             hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhh
Q psy15525         62 AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDH  101 (112)
Q Consensus        62 ~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~  101 (112)
                      ..|..++..|-+|.+.+.. ..+++.|.-++-||+-|+-|
T Consensus        31 ~RC~~FE~e~i~C~~~~G~-~r~kKeC~~e~EDy~EClh~   69 (96)
T PF10200_consen   31 SRCHPFEKEWIECAEAYGQ-TRGKKECKLELEDYYECLHH   69 (96)
T ss_pred             CchHHHHHHHHHHHHHHcc-cchhhhchhHHhHHHHHHhh
Confidence            5799999999999987644 45689999999999999854

Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
1bgy_H	78	Cytochrome Bc1 Complex From Bovine Length = 78		1e-11
1bcc_H	78	Cytochrome Bc1 Complex From Chicken Length = 78		2e-11
3cwb_H	77	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		5e-11
1qcr_H	60	Crystal Structure Of Bovine Mitochondrial Cytochrom		1e-08

>pdb|1BGY|H Chain H, Cytochrome Bc1 Complex From Bovine Length = 78

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 48  LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE+C +   C K  ++L+ C++RV+S+  T E C EEL+D+ H  DHCVAH 
Sbjct: 13  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 72
Query: 107 IHKYLK 112
           +   LK
Sbjct: 73  LFNSLK 78

>pdb|1BCC|H Chain H, Cytochrome Bc1 Complex From Chicken Length = 78

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 48  LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE+C +   C K  ++L+ C++RV+S+  T E C EEL D+ H  DHCVAH 
Sbjct: 13  LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELFDFLHARDHCVAHK 72
Query: 107 IHKYLK 112
           +   LK
Sbjct: 73  LFNSLK 78

>pdb|3CWB|H Chain H, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 77

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 48  LVDPQVTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE C +   C K  ++L+ C+ RV+S+ +T E C EEL D+ H  DHCVAH 
Sbjct: 12  LVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHK 71
Query: 107 IHKYLK 112
           +   LK
Sbjct: 72  LFNKLK 77

>pdb|1QCR|H Chain H, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 60

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 53  VTLREKCSEAH-CTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYL 111
            T+RE+C +   C K  ++L+ C++RV+S+  T E C EEL+D+ H  DHCVAH +   L
Sbjct: 1   TTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSL 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
1pp9_H	78	Ubiquinol-cytochrome C reductase complex 11 kDa P;	4e-24
3tgu_H	77	Mitochondrial ubiquinol-cytochrome C reductase 11	8e-24
3cx5_F	146	Cytochrome B-C1 complex subunit 6; complex III, el	1e-12

>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ... Length = 78

 Score = 86.5 bits (214), Expect = 4e-24
 Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 44  EEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
           EEEELVDP  T+RE+C +   C K  ++L+ C++RV+S+  T E C EEL+D+ H  DHC
Sbjct: 9   EEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHC 68

Query: 103 VAHDIHKYLK 112
           VAH +   LK
Sbjct: 69  VAHKLFNSLK 78

>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H* Length = 77

 Score = 86.1 bits (213), Expect = 8e-24
 Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 44  EEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHC 102
           EEEELVDP  T+RE C +   C K  ++L+ C+ RV+S+ +T E C EEL D+ H  DHC
Sbjct: 8   EEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHC 67

Query: 103 VAHDIHKYLK 112
           VAH +   LK
Sbjct: 68  VAHKLFNKLK 77

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F* Length = 146

 Score = 59.1 bits (142), Expect = 1e-12
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 44  EEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNT--------TESCYEELID 94
           EEEE+ D    LRE           +   ++C +RV  +Q           E C EE   
Sbjct: 69  EEEEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFH 128

Query: 95  YAHCVDHCVAHDIHKYLK 112
             H +D   A  +   LK
Sbjct: 129 LQHYLDTATAPRLFDKLK 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3tgu_H	77	Mitochondrial ubiquinol-cytochrome C reductase 11	100.0
1pp9_H	78	Ubiquinol-cytochrome C reductase complex 11 kDa P;	100.0
3cx5_F	146	Cytochrome B-C1 complex subunit 6; complex III, el	99.97

>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*

Probab=100.00  E-value=7.1e-36  Score=202.56  Aligned_cols=69  Identities=51%  Similarity=0.934  Sum_probs=66.5

Q ss_pred             cccccCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525         44 EEEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK  112 (112)
Q Consensus        44 ~eEE~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK  112 (112)
                      ||||+|||++.||++|++ ++|++++++|++|++||+++++++|||+|||||||||+|||||||||++||
T Consensus         8 eEeE~vDp~~~lre~C~~~~~C~~~~~~y~~C~eRV~~~~~~~e~C~eE~Fd~~hCvD~CvapkLF~~LK   77 (77)
T 3tgu_H            8 EEEELVDPLTTIREHCEQTEKCVKARERLELCDARVSSRSHTEEQCTEELFDFLHARDHCVAHKLFNKLK   77 (77)
T ss_dssp             -CCCCCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCCCCSHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             ccccccCHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhcHHHHHhcC
Confidence            457899999999999998 899999999999999999999999999999999999999999999999998

>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...

Probab=100.00  E-value=1.8e-35  Score=200.98  Aligned_cols=68  Identities=50%  Similarity=0.953  Sum_probs=64.3

Q ss_pred             ccccCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525         45 EEELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK  112 (112)
Q Consensus        45 eEE~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK  112 (112)
                      |||+|||++.||++|++ ++|++++++|++|++||+|++++++||+|||||||||||||||||||++||
T Consensus        10 eEE~vDp~~~l~e~C~~~~~C~~~~~~y~~C~eRV~s~~~~~e~C~ee~fd~~hCvD~CvapkLf~~LK   78 (78)
T 1pp9_H           10 EEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK   78 (78)
T ss_dssp             ---CCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred             cccccChHHHHHHHHhcchhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhhhHHHHHhcC
Confidence            47899999999999999 999999999999999999999999999999999999999999999999998

>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*

Probab=99.97  E-value=4.2e-32  Score=202.66  Aligned_cols=67  Identities=28%  Similarity=0.497  Sum_probs=62.2

Q ss_pred             cccCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCC--------CCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525         46 EELVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQ--------NTTESCYEELIDYAHCVDHCVAHDIHKYLK  112 (112)
Q Consensus        46 EE~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~--------~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK  112 (112)
                      ||+|||++.||++|++ ++|++++++|++|++||++++        .+++||++||||||||||||||||||++||
T Consensus        71 EE~vDPk~~LrEeC~~s~~C~~~~~~ydeCveRV~s~~e~~G~~~~~~~EdC~eE~Fdl~hCvD~CvAPKLF~~LK  146 (146)
T 3cx5_F           71 EEVTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK  146 (146)
T ss_dssp             --CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             ccccChHHHHHHHhcCCchhHHHHHHHHHHHHHHHccccccccccCCCCcccHHHHHHHHhhHhhccCHHHHHhcC
Confidence            6799999999999998 999999999999999999853        279999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d1ppjh_	66	f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrom	1e-22
d3cx5f1	74	f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cyt	1e-17

>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 66

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (201), Expect = 1e-22
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 48  LVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHD 106
           LVDP  T+RE+C +   C K  ++L+ C++RV+S+  T E C EEL+D+ H  DHCVAH 
Sbjct: 1   LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHK 60

Query: 107 IHKYLK 112
           +   LK
Sbjct: 61  LFNSLK 66

>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (169), Expect = 1e-17
 Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 48  LVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNT--------TESCYEELIDYAHC 98
           + D    LRE           +   ++C +RV  +Q           E C EE     H 
Sbjct: 1   VTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHY 60

Query: 99  VDHCVAHDIHKYLK 112
           +D   A  +   LK
Sbjct: 61  LDTATAPRLFDKLK 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d1ppjh_	66	Non-heme 11 kDa protein of cytochrome bc1 complex	100.0
d3cx5f1	74	Non-heme 11 kDa protein of cytochrome bc1 complex	99.98

>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-35  Score=193.96  Aligned_cols=65  Identities=48%  Similarity=0.941  Sum_probs=63.8

Q ss_pred             cCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCCCCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525         48 LVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQNTTESCYEELIDYAHCVDHCVAHDIHKYLK  112 (112)
Q Consensus        48 ~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~t~E~C~eE~fDl~hCvD~CvAPKLF~~LK  112 (112)
                      +|||++.||++|++ ++|++++++|++|++||+|+++|+|||+||||||+||+|||||||||++||
T Consensus         1 lVDp~~~lre~C~~~~~C~~~~~~~~eC~eRV~~~~~~~E~C~eE~fd~~hc~D~CvapkLF~~LK   66 (66)
T d1ppjh_           1 LVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSQTEEDCTEELLDFLHARDHCVAHKLFNSLK   66 (66)
T ss_dssp             CCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTCSSCSCCSHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred             CCCcHHHHHHHHhccHhhHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHhcCHHHHHhcC
Confidence            58999999999998 999999999999999999999999999999999999999999999999998

>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
superfamily: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.1e-33  Score=189.30  Aligned_cols=65  Identities=26%  Similarity=0.474  Sum_probs=61.3

Q ss_pred             cCCchHHHHHhhhh-hhhhhHHHHHHHHHHhhhcCCC--------CCCChhhHHHHHHHhhhhhhhHHHhhhcC
Q psy15525         48 LVDPQVTLREKCSE-AHCTKYLDKLQQCNDRVNSKQN--------TTESCYEELIDYAHCVDHCVAHDIHKYLK  112 (112)
Q Consensus        48 ~vDP~~~LrEeC~~-~~C~~~~~~yeeC~eRV~s~~~--------t~E~C~eE~fDl~hCvD~CvAPKLF~~LK  112 (112)
                      +|||++.|||+|++ ++|++++++|++|++||+|+++        ++|+|+||||||+||+|||||||||++||
T Consensus         1 lVDpl~~lre~C~~~~~C~~~~~~y~eC~eRV~s~~e~~~~~~~~~~E~C~eE~fdl~hcvD~CvApkLF~~LK   74 (74)
T d3cx5f1           1 VTDQLEDLREHFKNTEEGKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDTATAPRLFDKLK   74 (74)
T ss_dssp             CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCChHHHHHHHHhccHhhHHHHHHHHHHHHHHHhcccCCCcCCCccccchHHHHHHHHHHHHHhccHHHHHhcC
Confidence            58999999999998 9999999999999999998643        47999999999999999999999999998