Psyllid ID: psy15557

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------

MFCCLWTSVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKAQSALPRVIALS

cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHcccccccccEEEEEcccccEEEccccccccHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHcccEEEEEEEcccccHHHHHHccccccc

cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHcccEcccccEEEEEEEccEEEcccccccEEHHHHHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHccccEEEEEEcccccHHHHHcHHEEEcc

MFCCLWTSVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKTVAFFhpycnaggggeRVLWTAVLALHqkypdykiyiytgdvdaspsEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEAllsfqpdiyidtmgyaftyplfsyiggskvacyihyptitkaqsalPRVIALS

MFCCLWTSVVMWLVFLFYsilalillliivlpisvllFKYYVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKAQSALPRVIALS

*FCCLWTSVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKAQSAL*******

MFCCLWTSVVMWLVFLFYSILALILLLIIVLPISVLLFKYYVSKK***YNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHYPTITKAQSALPRV****

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SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		207	2.2.26 [Sep-21-2011]
Q3TZM9		492	GDP-Man:Man(3)GlcNAc(2)-P	yes	N/A	0.859	0.361	0.508	4e-49
Q6P312		487	GDP-Man:Man(3)GlcNAc(2)-P	yes	N/A	0.874	0.371	0.502	7e-48
Q7ZW24		500	GDP-Man:Man(3)GlcNAc(2)-P	yes	N/A	0.874	0.362	0.502	8e-48
Q2TAA5		492	GDP-Man:Man(3)GlcNAc(2)-P	yes	N/A	0.816	0.343	0.543	6e-47
Q5R7Z6		492	GDP-Man:Man(3)GlcNAc(2)-P	yes	N/A	0.816	0.343	0.543	6e-47
Q08B22		486	GDP-Man:Man(3)GlcNAc(2)-P	N/A	N/A	0.874	0.372	0.513	7e-47
Q54DM9		505	GDP-Man:Man(3)GlcNAc(2)-P	yes	N/A	0.676	0.277	0.567	5e-45
P53993		470	Uncharacterized glycosylt	yes	N/A	0.826	0.363	0.451	2e-40
Q9XEE9		463	GDP-Man:Man(3)GlcNAc(2)-P	yes	N/A	0.835	0.373	0.456	1e-38
O74878		471	GDP-Man:Man(3)GlcNAc(2)-P	yes	N/A	0.801	0.352	0.479	2e-38

>sp\|Q3TZM9\|ALG11_MOUSE GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Mus musculus GN=Alg11 PE=2 SV=1	Back alignment and function desciption

 Score =  194 bits (492), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/185 (50%), Positives = 130/185 (70%), Gaps = 7/185 (3%)

Query: 16  LFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKT------VAFFHPYCNAGGGGE 69
           LF+  L +  +L + L I + + ++++ +K+KS +  K       VAFFHPYCNAGGGGE
Sbjct: 20  LFFPGLMICGVLCVYLVIGLWVIRWHLQRKKKSVSTSKNGKEQTVVAFFHPYCNAGGGGE 79

Query: 70  RVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKF 129
           RVLW A+ AL +KYP+    +YTGD++ S  +I+  A +RFNI L    + FV+L +R  
Sbjct: 80  RVLWCALRALQKKYPEAVYVVYTGDINVSGQQILDGAFRRFNIKLA-HPVQFVFLRKRYL 138

Query: 130 VEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIH 189
           VE S YP+FTLLGQS+GS++LG EAL+   PD+YID+MGYAFT PLF Y+GG +V  Y+H
Sbjct: 139 VEDSRYPHFTLLGQSLGSILLGWEALMQRVPDVYIDSMGYAFTLPLFKYVGGCRVGSYVH 198

Query: 190 YPTIT 194
           YPTI+
Sbjct: 199 YPTIS 203

Mannosyltransferase involved in the last steps of the synthesis of Man5GlcNAc(2)-PP-dolichol core oligosaccharide on the cytoplasmic face of the endoplasmic reticulum. Catalyzes the addition of the 4th and 5th mannose residues to the dolichol-linked oligosaccharide chain.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 3EC: 1

>sp\|Q6P312\|ALG11_XENTR GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Xenopus tropicalis GN=alg11 PE=2 SV=1	Back alignment and function description

>sp\|Q7ZW24\|ALG11_DANRE GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Danio rerio GN=alg11 PE=2 SV=2	Back alignment and function description

>sp\|Q2TAA5\|ALG11_HUMAN GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Homo sapiens GN=ALG11 PE=1 SV=2	Back alignment and function description

>sp\|Q5R7Z6\|ALG11_PONAB GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Pongo abelii GN=ALG11 PE=2 SV=2	Back alignment and function description

>sp\|Q08B22\|ALG11_XENLA GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Xenopus laevis GN=alg11 PE=2 SV=2	Back alignment and function description

>sp\|Q54DM9\|ALG11_DICDI GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Dictyostelium discoideum GN=alg11 PE=3 SV=1	Back alignment and function description

>sp\|P53993\|YMP8_CAEEL Uncharacterized glycosyltransferase B0361.8 OS=Caenorhabditis elegans GN=B0361.8 PE=3 SV=3	Back alignment and function description

>sp\|Q9XEE9\|ALG11_ARATH GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG11 PE=1 SV=2	Back alignment and function description

>sp\|O74878\|ALG11_SCHPO GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alg11 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		207
193594308		466	PREDICTED: asparagine-linked glycosylati	0.879	0.390	0.619	4e-59
170064341		481	alpha-1,2-mannosyltransferase alg11 [Cul	0.777	0.334	0.650	3e-57
157103404		484	glycosyl transferase [Aedes aegypti] gi\|	0.903	0.386	0.551	6e-56
312381432		476	hypothetical protein AND_06263 [Anophele	0.801	0.348	0.605	2e-54
158287244		477	AGAP011324-PA [Anopheles gambiae str. PE	0.869	0.377	0.532	3e-53
383849561		474	PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Do	0.821	0.358	0.581	1e-52
380015214		474	PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Do	0.748	0.327	0.634	1e-52
195495473		651	GE19778 [Drosophila yakuba] gi\|194181382	0.772	0.245	0.576	2e-52
195476861		651	GE23039 [Drosophila yakuba] gi\|194186047	0.772	0.245	0.576	2e-52
328776479		489	PREDICTED: asparagine-linked glycosylati	0.748	0.316	0.621	2e-52

>gi\|193594308\|ref\|XP_001948130.1\| PREDICTED: asparagine-linked glycosylation protein 11 homolog [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 114/184 (61%), Positives = 139/184 (75%), Gaps = 2/184 (1%)

Query: 11  MWLVFLFYSILALILLLIIVLPISVLLFKYYVSKKRKSYNVLKTVAFFHPYCNAGGGGER 70
           M+   L Y I +L+ + I++     +L  +Y SKKRK +    ++AFFHPYCNAGGGGER
Sbjct: 1   MYFQLLLYFIFSLVAVFIVLFVFVAVLRWHYASKKRK-FPTQFSIAFFHPYCNAGGGGER 59

Query: 71  VLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFV 130
           VLW AV A+   YP  KI IYTGD++ SP EIIKRA QRFNI LP   + F+YL+RRK+V
Sbjct: 60  VLWCAVNAVSTAYPKVKIVIYTGDLEVSPVEIIKRAKQRFNIALPNN-LEFIYLHRRKWV 118

Query: 131 EASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVACYIHY 190
           EA  YPYFTLLGQS+GS++LG+EAL  FQPDIYIDTMGYAFT PLF  IGG KV+CY+HY
Sbjct: 119 EAENYPYFTLLGQSLGSIVLGIEALRLFQPDIYIDTMGYAFTLPLFCLIGGCKVSCYVHY 178

Query: 191 PTIT 194
           PTI+
Sbjct: 179 PTIS 182

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|170064341\|ref\|XP_001867485.1\| alpha-1,2-mannosyltransferase alg11 [Culex quinquefasciatus] gi\|167881775\|gb\|EDS45158.1\| alpha-1,2-mannosyltransferase alg11 [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|157103404\|ref\|XP_001647965.1\| glycosyl transferase [Aedes aegypti] gi\|108884188\|gb\|EAT48413.1\| AAEL000559-PA [Aedes aegypti]	Back alignment and taxonomy information

>gi\|312381432\|gb\|EFR27184.1\| hypothetical protein AND_06263 [Anopheles darlingi]	Back alignment and taxonomy information

>gi\|158287244\|ref\|XP_309328.3\| AGAP011324-PA [Anopheles gambiae str. PEST] gi\|157019558\|gb\|EAA05076.3\| AGAP011324-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|383849561\|ref\|XP_003700413.1\| PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|380015214\|ref\|XP_003691602.1\| PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [Apis florea]	Back alignment and taxonomy information

>gi\|195495473\|ref\|XP_002095281.1\| GE19778 [Drosophila yakuba] gi\|194181382\|gb\|EDW94993.1\| GE19778 [Drosophila yakuba]	Back alignment and taxonomy information

>gi\|195476861\|ref\|XP_002086257.1\| GE23039 [Drosophila yakuba] gi\|194186047\|gb\|EDW99658.1\| GE23039 [Drosophila yakuba]	Back alignment and taxonomy information

>gi\|328776479\|ref\|XP_624912.3\| PREDICTED: asparagine-linked glycosylation protein 11 homolog [Apis mellifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		207
FB\|FBgn0037108		475	CG11306 [Drosophila melanogast	0.676	0.294	0.628	1.6e-47
UNIPROTKB\|E1BUY5		491	ALG11 "Uncharacterized protein	0.671	0.283	0.635	1.6e-45
UNIPROTKB\|E2RR35		667	ALG11 "Uncharacterized protein	0.714	0.221	0.605	4.4e-45
UNIPROTKB\|E1B756		500	ALG11 "Uncharacterized protein	0.734	0.304	0.566	7.1e-45
UNIPROTKB\|F1RMC7		492	ALG11 "Uncharacterized protein	0.714	0.300	0.598	1.2e-44
MGI\|MGI:2142632		492	Alg11 "asparagine-linked glyco	0.748	0.315	0.543	1.9e-44
UNIPROTKB\|Q2TAA5		492	ALG11 "GDP-Man:Man(3)GlcNAc(2)	0.743	0.313	0.570	3.1e-44
RGD\|1564725		492	Alg11 "ALG11, alpha-1,2-mannos	0.739	0.310	0.556	3.1e-44
ZFIN\|ZDB-GENE-030131-7282		500	alg11 "asparagine-linked glyco	0.739	0.306	0.560	8.1e-44
DICTYBASE\|DDB_G0292118		505	alg11 "alpha-1,2-mannosyltrans	0.724	0.297	0.558	2.5e-42

FB\|FBgn0037108 CG11306 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 88/140 (62%), Positives = 110/140 (78%)

Query:    55 VAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVL 114
             V  FHPYCNAGGGGERVLW AV AL +KY + ++ IYTGD+DASP+ I+++A   FNI +
Sbjct:    46 VGIFHPYCNAGGGGERVLWCAVRALQEKYQNARMVIYTGDIDASPNSILQKAKNVFNIAV 105

Query:   115 PEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP 174
                 + FV+L +R ++EA  YP+FTLLGQSIGSM++G+EAL  F PDIYIDTMGYAFTYP
Sbjct:   106 DSDNVKFVFLKQRHWIEAKNYPHFTLLGQSIGSMVVGLEALCRFPPDIYIDTMGYAFTYP 165

Query:   175 LFSYIGGSKVACYIHYPTIT 194
             LF Y+  SKV CY+HYP I+
Sbjct:   166 LFRYLAQSKVGCYVHYPVIS 185

GO:0000026 "alpha-1,2-mannosyltransferase activity" evidence=ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB\|E1BUY5 ALG11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RR35 ALG11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B756 ALG11 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RMC7 ALG11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:2142632 Alg11 "asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2TAA5 ALG11 "GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1564725 Alg11 "ALG11, alpha-1,2-mannosyltransferase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-7282 alg11 "asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0292118 alg11 "alpha-1,2-mannosyltransferase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3TZM9	ALG11_MOUSE	2, ., 4, ., 1, ., 1, 3, 1	0.5081	0.8599	0.3617	yes	N/A
Q6P312	ALG11_XENTR	2, ., 4, ., 1, ., 1, 3, 1	0.5026	0.8743	0.3716	yes	N/A
Q6FWD1	ALG11_CANGA	2, ., 4, ., 1, ., 1, 3, 1	0.5179	0.6714	0.2752	yes	N/A
Q5R7Z6	ALG11_PONAB	2, ., 4, ., 1, ., 1, 3, 1	0.5433	0.8164	0.3434	yes	N/A
Q54DM9	ALG11_DICDI	2, ., 4, ., 1, ., 1, 3, 1	0.5673	0.6763	0.2772	yes	N/A
Q2TAA5	ALG11_HUMAN	2, ., 4, ., 1, ., 1, 3, 1	0.5433	0.8164	0.3434	yes	N/A
Q7ZW24	ALG11_DANRE	2, ., 4, ., 1, ., 1, 3, 1	0.5026	0.8743	0.362	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		207
cd03806		419	cd03806, GT1_ALG11_like, This family is most close	7e-83
PLN02949		463	PLN02949, PLN02949, transferase, transferring glyc	2e-61

>gnl\|CDD\|99978 cd03806, GT1_ALG11_like, This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

 Score =  251 bits (644), Expect = 7e-83
 Identities = 90/143 (62%), Positives = 106/143 (74%)

Query: 53  KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNI 112
            TV FFHPYCNAGGGGERVLW AV AL ++YP+  + IYTGD+DA+P EI+++   RFNI
Sbjct: 1   NTVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNI 60

Query: 113 VLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFT 172
            L    I F  L  RK VEAS YP FTLLGQ++GSMILG+EALL   PDI+IDTMGY FT
Sbjct: 61  ELDRPRIVFFLLKYRKLVEASTYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFT 120

Query: 173 YPLFSYIGGSKVACYIHYPTITK 195
           YPL   +GG  V  Y+HYPTI+ 
Sbjct: 121 YPLVRLLGGCPVGAYVHYPTIST 143

ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides. Length = 419

>gnl\|CDD\|215511 PLN02949, PLN02949, transferase, transferring glycosyl groups	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		207
KOG1387\|consensus		465		100.0
PLN02949		463	transferase, transferring glycosyl groups	100.0
cd03806		419	GT1_ALG11_like This family is most closely related	100.0
cd03805		392	GT1_ALG2_like This family is most closely related	98.52
cd03804		351	GT1_wbaZ_like This family is most closely related	97.83
PF13439		177	Glyco_transf_4: Glycosyltransferase Family 4; PDB:	97.54
cd01635		229	Glycosyltransferase_GTB_type Glycosyltransferases	96.77
cd03811		353	GT1_WabH_like This family is most closely related	96.59
cd03809		365	GT1_mtfB_like This family is most closely related	96.53
cd03807		365	GT1_WbnK_like This family is most closely related	96.13
cd03818		396	GT1_ExpC_like This family is most closely related	96.11
cd03801		374	GT1_YqgM_like This family is most closely related	95.87
cd03823		359	GT1_ExpE7_like This family is most closely related	95.84
cd03822		366	GT1_ecORF704_like This family is most closely rela	95.79
cd03820		348	GT1_amsD_like This family is most closely related	95.62
KOG0853\|consensus		495		95.12
PRK00726		357	murG undecaprenyldiphospho-muramoylpentapeptide be	95.04
PRK09922		359	UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D	95.03
cd04955		363	GT1_like_6 This family is most closely related to	94.96
cd03785		350	GT1_MurG MurG is an N-acetylglucosaminyltransferas	94.77
cd03802		335	GT1_AviGT4_like This family is most closely relate	94.69
cd03819		355	GT1_WavL_like This family is most closely related	94.22
cd03796		398	GT1_PIG-A_like This family is most closely related	94.13
PRK10307		412	putative glycosyl transferase; Provisional	93.52
cd03821		375	GT1_Bme6_like This family is most closely related	93.42
cd03794		394	GT1_wbuB_like This family is most closely related	93.41
cd03812		358	GT1_CapH_like This family is most closely related	93.28
cd04962		371	GT1_like_5 This family is most closely related to	92.86
cd03817		374	GT1_UGDG_like This family is most closely related	92.64
cd03798		377	GT1_wlbH_like This family is most closely related	92.58
cd03825		365	GT1_wcfI_like This family is most closely related	92.45
cd03808		359	GT1_cap1E_like This family is most closely related	91.78
TIGR03088		374	stp2 sugar transferase, PEP-CTERM/EpsH1 system ass	91.48
PF08660		170	Alg14: Oligosaccharide biosynthesis protein Alg14	91.34
cd03800		398	GT1_Sucrose_synthase This family is most closely r	90.02
TIGR01133		348	murG undecaprenyldiphospho-muramoylpentapeptide be	89.35
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	89.17
cd03814		364	GT1_like_2 This family is most closely related to	88.56
cd04951		360	GT1_WbdM_like This family is most closely related	87.43
TIGR03449		405	mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino	85.5
PRK12446		352	undecaprenyldiphospho-muramoylpentapeptide beta-N-	85.19
PF13579		160	Glyco_trans_4_4: Glycosyl transferase 4-like domai	84.85
cd03792		372	GT1_Trehalose_phosphorylase Trehalose phosphorylas	84.33
KOG3339\|consensus		211		84.27
cd03795		357	GT1_like_4 This family is most closely related to	82.73

>KOG1387\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.2e-75  Score=536.39  Aligned_cols=170  Identities=48%  Similarity=0.882  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHHhhhh----ccCCccEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHH
Q psy15557         30 VLPISVLLFKYYVSKKRK----SYNVLKTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKR  105 (207)
Q Consensus        30 ~l~~~~~~~r~~~~~k~~----~~~~~~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~  105 (207)
                      +++.-+..++.|+-+|..    .+++.++|||||||||||||||||||+||+++|+++||+++||||||.|+||++||+|
T Consensus        17 ~~v~~l~~l~~~l~~k~sl~~~~~k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k   96 (465)
T KOG1387|consen   17 VLVYGLIKLLTWLFKKSSLLNRAEKNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNK   96 (465)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhhhhhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHH
Confidence            333334445566554443    4556689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcceeecCCceEEEEcCccceeeCCCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHHHHHHhCCCeeE
Q psy15557        106 AHQRFNIVLPEQAINFVYLYRRKFVEASLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYPLFSYIGGSKVA  185 (207)
Q Consensus       106 a~~rF~i~L~~~~i~FV~Lr~r~lve~~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyPl~k~l~g~~V~  185 (207)
                      ||++|||+||+++|+||+|+-|.|||+++||||||||||||||+||+||+.+++|||||||||||||||++|.|.++||+
T Consensus        97 ~k~~F~idlDs~nI~Fi~Lk~R~lVea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~~~V~  176 (465)
T KOG1387|consen   97 VKNKFDIDLDSDNIFFIYLKLRYLVEASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRRLRRIPVV  176 (465)
T ss_pred             HHHhcCceecccceEEEEEEeeeeeecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHHHccCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeCccccccccc
Q psy15557        186 CYIHYPTITKAQSA  199 (207)
Q Consensus       186 ~YvHYPtIStDMl~  199 (207)
                      |||||||||||||.
T Consensus       177 aYvHYP~iS~DML~  190 (465)
T KOG1387|consen  177 AYVHYPTISTDMLK  190 (465)
T ss_pred             EEEecccccHHHHH
Confidence            99999999999975

>PLN02949 transferase, transferring glycosyl groups	Back alignment and domain information

>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A	Back alignment and domain information

>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds	Back alignment and domain information

>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known	Back alignment and domain information

>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>KOG0853\|consensus	Back alignment and domain information

>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	Back alignment and domain information

>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional	Back alignment and domain information

>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis	Back alignment and domain information

>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>PRK10307 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated	Back alignment and domain information

>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane []	Back alignment and domain information

>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli	Back alignment and domain information

>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase	Back alignment and domain information

>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	Back alignment and domain information

>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A	Back alignment and domain information

>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose	Back alignment and domain information

>KOG3339\|consensus	Back alignment and domain information

>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		207
2jjm_A		394	Glycosyl transferase, group 1 family protein; anth	96.42
3fro_A		439	GLGA glycogen synthase; glycosyltransferase family	96.19
1f0k_A		364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	95.98
3okp_A		394	GDP-mannose-dependent alpha-(1-6)-phosphatidylino	95.19
2iuy_A		342	Avigt4, glycosyltransferase; antibiotics, family G	94.65
2gek_A		406	Phosphatidylinositol mannosyltransferase (PIMA); G	94.48
2r60_A		499	Glycosyl transferase, group 1; rossmann-fold; 1.80	93.94
2x6q_A		416	Trehalose-synthase TRET; biosynthetic protein; 2.2	93.79
3c48_A		438	Predicted glycosyltransferases; retaining glycosyl	93.26
2vsy_A		568	XCC0866; transferase, glycosyl transferase, GT-B,	92.4
3oy2_A		413	Glycosyltransferase B736L; rossmann fold, GDP-mann	91.69
2iw1_A		374	Lipopolysaccharide core biosynthesis protein RFAG;	89.49
2gt1_A		326	Lipopolysaccharide heptosyltransferase-1; GT-B fol	87.06
3s2u_A		365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	86.9
3dzc_A		396	UDP-N-acetylglucosamine 2-epimerase; structural ge	86.89
2qzs_A		485	Glycogen synthase; glycosyl-transferase, GT-B fold	85.63
1psw_A		348	ADP-heptose LPS heptosyltransferase II; structural	83.29
1rzu_A		485	Glycogen synthase 1; glycosyl-transferase, GT-B fo	83.05

>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*	Back alignment and structure

Probab=96.42  E-value=0.03  Score=47.07  Aligned_cols=114  Identities=16%  Similarity=0.026  Sum_probs=65.1

Q ss_pred             cEEEEEccCCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCCCCCChhHHHHHHHHhcceeecCCceEEEEcCccceeeC
Q psy15557         53 KTVAFFHPYCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGDVDASPSEIIKRAHQRFNIVLPEQAINFVYLYRRKFVEA  132 (207)
Q Consensus        53 ~~VgFFHPycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd~~~~~~~il~~a~~rF~i~L~~~~i~FV~Lr~r~lve~  132 (207)
                      +....+.|.   .||.|++.+.-+++++++  ++.+.++|.+.+   .+. +         ...+.+.+..+....    
T Consensus        17 ~~~~~~~p~---~GG~~~~~~~la~~L~~~--G~~V~v~~~~~~---~~~-~---------~~~~~i~~~~~~~~~----   74 (394)
T 2jjm_A           17 KIGITCYPS---VGGSGVVGTELGKQLAER--GHEIHFITSGLP---FRL-N---------KVYPNIYFHEVTVNQ----   74 (394)
T ss_dssp             EEEEECCC-----CHHHHHHHHHHHHHHHT--TCEEEEECSSCC-----------------CCCTTEEEECCCCC-----
T ss_pred             eeehhcCCC---CCCHHHHHHHHHHHHHhC--CCEEEEEeCCCC---Ccc-c---------ccCCceEEEeccccc----
Confidence            355566664   569999999999999987  788888887632   110 0         111344444433221    


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHHhcCCCCEEEECCCccchHH--HHHHhC--CCeeEEeeeC
Q psy15557        133 SLYPYFTLLGQSIGSMILGVEALLSFQPDIYIDTMGYAFTYP--LFSYIG--GSKVACYIHY  190 (207)
Q Consensus       133 ~~yp~fTLLgQslGSi~L~~EAl~~~~PDVfIDTmGyaFtyP--l~k~l~--g~~V~~YvHY  190 (207)
                        +|.+......+....-..+.+.+..|||.+-..+++..++  +.+.+.  +.|++..+|=
T Consensus        75 --~~~~~~~~~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~  134 (394)
T 2jjm_A           75 --YSVFQYPPYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHG  134 (394)
T ss_dssp             -----CCSCCHHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCH
T ss_pred             --ccccccccccHHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEec
Confidence              2222111112222333455677789999998766655433  445454  5899999995

PyMOL of 2jjm

>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*	Back alignment and structure

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*	Back alignment and structure

>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*	Back alignment and structure

>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*	Back alignment and structure

>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*	Back alignment and structure

>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*	Back alignment and structure

>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*	Back alignment and structure

>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*	Back alignment and structure

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*	Back alignment and structure

>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*	Back alignment and structure

>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*	Back alignment and structure

>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*	Back alignment and structure

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}	Back alignment and structure

>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}	Back alignment and structure

>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A	Back alignment and structure

>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7	Back alignment and structure

>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		207
d2iw1a1		370	Lipopolysaccharide core biosynthesis protein RfaG	90.26

>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Lipopolysaccharide core biosynthesis protein RfaG
species: Escherichia coli [TaxId: 562]

Probab=90.26  E-value=0.93  Score=34.14  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=30.3

Q ss_pred             EEEEEcc-CCCCCCcchhHHHHHHHHHHhhCCCceEEEEcCC
Q psy15557         54 TVAFFHP-YCNAGGGGERVLWTAVLALHQKYPDYKIYIYTGD   94 (207)
Q Consensus        54 ~VgFFHP-ycnaGGGGERVLW~Ai~alq~~~~~~~~vIYTgd   94 (207)
                      +|||..+ |-- =||+||..-.-.++|+++  ++.+.|+|.+
T Consensus         1 ~i~f~~~~y~p-~GG~e~~~~~la~~L~~~--G~~V~v~~~~   39 (370)
T d2iw1a1           1 IVAFCLYKYFP-FGGLQRDFMRIASTVAAR--GHHVRVYTQS   39 (370)
T ss_dssp             CEEEECSEECT-TCHHHHHHHHHHHHHHHT--TCCEEEEESE
T ss_pred             CEEEEecCCCC-CCCHHHHHHHHHHHHHHC--CCEEEEEecC
Confidence            4778774 322 379999999999999998  7899999864

PyMOL of d2iw1a1