Psyllid ID: psy15562

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSPVKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYEMNLFCSSEMNCKKKAT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHcHHHHcccccHHccccccccccccccccHHHcccccHHHHHHHHHHHHHHHccccHHHHHcccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHccHHccHHHHHHHHHHHHHHHHHHcHHHHccccccccccccc
Coil and Loop (DISEMBL)
EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKdtmnysrekdrggdhmsskpllsddfhspspvkisapfgssrqtkYSKLnnqmdspnrswlsnsinqqsamfdqqdSQLDMLSETIGTLTVQVRRQTKYSklnnqmdspnrswvsnsinqqsamfdqqdSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEmgnemectESKLDATMKKVAKVLHISNGemldemgnemectESKLDATMKKVAKVLHISNVFCSYEMNlfcssemnckkkat
Flexible Loop (DISEMBL)
evskainktrslyKRWLELKEETyasnilrdelewTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSPVKisapfgssrqTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKlnnqmdspnrsWVSNSINQQSAMFDQQDSQLDMLSETIGTLktvsrnigsELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYEmnlfcssemnckkkat
Low Complexity Region (SEG)
EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSPVKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYEMNLFCSSEMNCKKKAT
Disordered region (IsUnstruct)
**********SLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDT**************************************************************************************LT******************************************************************************************VAKVLHI*******************LDATMKKVAKVLHISNVFCSYEMNLFCS**********
Disordered Region (DISOPRED)
EVSKAINKTRSLYKRWL***************************RSIEWDLEDLEDTINILYN***********************************************************************************************************************************************DMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV***SNG*MLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYEMNLFCSSEMNCK****
Disordered Region (DISEMBL)
EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYSR***********KPLLSDDFHSPSPVKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYEMNLFCSSEMNCKKKAT
Disordered Region (DISPRO)
EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYSREKDR*********************************************NRSWLSNSINQQSAMFDQQDS***MLS*T*G**T********YSKLNNQ**SPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYEMNLFCSSE**C*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTxxxxxxxxxxxxxxxxxxxxxxxxxxxxFDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSPVKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMxxxxxxxxxxxxxxxxxxxxxVAKVLHISNGEMxxxxxxxxxxxxxxxxxxxxxVAKVLHISNVFCSYEMNLFCSSEMNCKKKAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q63635	255	Syntaxin-6 OS=Rattus norv	yes	N/A	0.676	0.843	0.323	1e-30
Q5R6Q2	255	Syntaxin-6 OS=Pongo abeli	yes	N/A	0.654	0.815	0.315	2e-25
O43752	255	Syntaxin-6 OS=Homo sapien	yes	N/A	0.654	0.815	0.315	2e-25
Q9JKK1	255	Syntaxin-6 OS=Mus musculu	yes	N/A	0.654	0.815	0.307	2e-25
O60499	249	Syntaxin-10 OS=Homo sapie	no	N/A	0.641	0.819	0.306	1e-24
Q5ZL19	254	Syntaxin-6 OS=Gallus gall	yes	N/A	0.654	0.818	0.316	7e-24
P83528	122	Putative syntaxin C15C7.1	yes	N/A	0.283	0.737	0.385	2e-11

>sp|Q63635|STX6_RAT Syntaxin-6 OS=Rattus norvegicus GN=Stx6 PE=1 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 140/266 (52%), Gaps = 51/266 (19%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+N  + L++RW EL +   A+   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct: 13  EVQKAVNTAQGLFQRWTELLQGPSAAT--REEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query: 61  LYNN---FDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSPVKISAPFGSSRQ 117
           +  N   F+                                     + + I   F +S +
Sbjct: 71  VEANPRKFNL----------------------------------DATELSIRKAFITSTR 96

Query: 118 TKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLN 177
                + +QM + +   L+   N+Q+ + D      D        +T       +Y +L+
Sbjct: 97  QIVRDMKDQMSASSVQALAERKNRQALLGDSSSQNWD------AGVT------DRYGRLD 144

Query: 178 NQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEM 237
            ++   N  ++     QQ  + +QQD QL+++S +IG LK +S+ IG EL+EQA+MLD+ 
Sbjct: 145 RELQLANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDF 204

Query: 238 GNEMECTESKLDATMKKVAKVLHISN 263
            +E+E T+S+LD  MKK+AKV H+++
Sbjct: 205 SHELESTQSRLDNVMKKLAKVSHMTS 230

Involved in intracellular vesicle trafficking.
Rattus norvegicus (taxid: 10116)

>sp|Q5R6Q2|STX6_PONAB Syntaxin-6 OS=Pongo abelii GN=STX6 PE=2 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 136/273 (49%), Gaps = 65/273 (23%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+N  + L++RW EL ++   S   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct: 13  EVQKAVNTAQGLFQRWTELLQD--PSTATREEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query: 61  LYN-----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPVKISAPF 112
           +       N D  E    K  +  +R+  R   D MS+  +  L++  +  + +  S   
Sbjct: 71  VEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNRQALLGDSGSQ 130

Query: 113 GSSRQT--KYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQ 170
             S  T  KY +L+ ++   N  ++     QQ  + +QQD QL+++S +IG L       
Sbjct: 131 NWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL------- 183

Query: 171 TKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQ 230
                                                         K +S+ IG EL+EQ
Sbjct: 184 ----------------------------------------------KNMSQRIGGELEEQ 197

Query: 231 ALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           A+ML++  +E+E T+S+LD  MKK+AKV H+++
Sbjct: 198 AVMLEDFSHELESTQSRLDNVMKKLAKVSHMTS 230

Involved in intracellular vesicle trafficking.

Pongo abelii (taxid: 9601)

>sp|O43752|STX6_HUMAN Syntaxin-6 OS=Homo sapiens GN=STX6 PE=1 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 136/273 (49%), Gaps = 65/273 (23%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+N  + L++RW EL ++   S   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct: 13  EVQKAVNTAQGLFQRWTELLQD--PSTATREEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query: 61  LYN-----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPVKISAPF 112
           +       N D  E    K  +  +R+  R   D MS+  +  L++  +  + +  S   
Sbjct: 71  VEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNRQALLGDSGSQ 130

Query: 113 GSSRQT--KYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQ 170
             S  T  KY +L+ ++   N  ++     QQ  + +QQD QL+++S +IG L       
Sbjct: 131 NWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL------- 183

Query: 171 TKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQ 230
                                                         K +S+ IG EL+EQ
Sbjct: 184 ----------------------------------------------KNMSQRIGGELEEQ 197

Query: 231 ALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           A+ML++  +E+E T+S+LD  MKK+AKV H+++
Sbjct: 198 AVMLEDFSHELESTQSRLDNVMKKLAKVSHMTS 230

Involved in intracellular vesicle trafficking.

Homo sapiens (taxid: 9606)

>sp|Q9JKK1|STX6_MOUSE Syntaxin-6 OS=Mus musculus GN=Stx6 PE=1 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 137/273 (50%), Gaps = 65/273 (23%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+N  + L++RW EL +   A+   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct: 13  EVQKAVNTAQGLFQRWTELLQGPSAAT--REEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query: 61  LYN-----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPVKISA-- 110
           +       N D  E    K  +  +R+  R   D MS+  +  L++  +  + +  S+  
Sbjct: 71  VEANPRKFNLDATELSIRKAFITSTRQIVRDMKDQMSASSVQALAERKNRQALLGDSSSQ 130

Query: 111 PFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQ 170
            + +    +Y +L+ ++   N  ++     QQ  + +QQD QL+++S +IG L       
Sbjct: 131 SWNAGVADRYGRLDRELQLANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL------- 183

Query: 171 TKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQ 230
                                                         K +S+ IG EL+EQ
Sbjct: 184 ----------------------------------------------KNMSQRIGGELEEQ 197

Query: 231 ALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           A+MLD+  +E+E T+S+LD  MKK+AKV H+++
Sbjct: 198 AVMLDDFSHELESTQSRLDNVMKKLAKVSHMTS 230

Involved in intracellular vesicle trafficking.

Mus musculus (taxid: 10090)

>sp|O60499|STX10_HUMAN Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 67/271 (24%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+N  R LY+RW EL +E+ A  + R+EL+WTT ELRN LRSIEWDLEDLE+TI I
Sbjct: 13  EVQKAVNTARGLYQRWCELLQESAA--VGREELDWTTNELRNGLRSIEWDLEDLEETIGI 70

Query: 61  LYNN--------FDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSPVKISAPF 112
           +  N         D  E     + M  + ++ +  DHM S   ++  F   +  +I A  
Sbjct: 71  VEANPGKFKLPAGDLQERKVFVERMREAVQEMK--DHMVSPTAVA--FLERNNREILAGK 126

Query: 113 GSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTK 172
            +++++    L+    S    ++      Q  + D+QD QL+M+S +I  L         
Sbjct: 127 PAAQKSPSDLLDASAVSATSRYIEEQQATQQLIMDEQDQQLEMVSGSIQVL--------- 177

Query: 173 YSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQAL 232
                                                       K +S  +G ELDEQ +
Sbjct: 178 --------------------------------------------KHMSGRVGEELDEQGI 193

Query: 233 MLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           MLD    EM+ T+S++D  ++K+AKV H+++
Sbjct: 194 MLDAFAQEMDHTQSRMDGVLRKLAKVSHMTS 224

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|Q5ZL19|STX6_CHICK Syntaxin-6 OS=Gallus gallus GN=STX6 PE=2 SV=1

 Score =  111 bits (278), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 138/272 (50%), Gaps = 64/272 (23%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+N  + L++RW EL ++   +   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct: 13  EVQKAVNTAQGLFQRWTELLQDPSIAT--REEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query: 61  LYN-----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPV-KISAP 111
           +       N D  E    K  +  +R+  R   D MS+  +  L++  +  + + + S+ 
Sbjct: 71  VEANPRKFNLDATELGIRKSFITSTRQVVREMKDQMSNSSMQALAERKNRQALLGESSSQ 130

Query: 112 FGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQT 171
             SS   KYS+L+ ++   N  ++     QQ  + +QQD QL+++S +IG L        
Sbjct: 131 SWSSGPDKYSRLDRELQLANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL-------- 182

Query: 172 KYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQA 231
                                                        K +S+ IG EL+EQA
Sbjct: 183 ---------------------------------------------KNMSQRIGGELEEQA 197

Query: 232 LMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           +MLD+  +E++ T S+LD  MKK+AKV H+++
Sbjct: 198 VMLDDFSHELDSTHSRLDNVMKKLAKVSHMTS 229

Involved in intracellular vesicle trafficking.

Gallus gallus (taxid: 9031)

>sp|P83528|STX5_CAEEL Putative syntaxin C15C7.1 OS=Caenorhabditis elegans GN=C15C7.1 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 63/96 (65%), Gaps = 6/96 (6%)

Query: 172 KYSKLNNQM----DSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSEL 227
           +YSKLN +     D P  S  +  + +Q  +  +QD +L+++  ++ TL+ +S  IG EL
Sbjct: 5   RYSKLNEEEISLEDMP--SSANQILTRQEQIIQEQDDELELVGNSVRTLRGMSSMIGDEL 62

Query: 228 DEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           D+Q+ MLD++G EME +E++LD  MKK+AK+ H+ +
Sbjct: 63  DQQSTMLDDLGQEMEYSETRLDTAMKKMAKLTHLED 98

Potentially involved in docking of synaptic vesicles at presynaptic active zones.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
383858309	675	PREDICTED: uncharacterized protein LOC10	0.707	0.333	0.437	1e-49
195333305	379	GM21258 [Drosophila sechellia] gi|194125	0.792	0.664	0.445	2e-49
60678081	368	LD12915p [Drosophila melanogaster]	0.786	0.679	0.441	4e-48
45552585	339	syntaxin 6, isoform E [Drosophila melano	0.786	0.737	0.441	4e-48
45552581	323	syntaxin 6, isoform D [Drosophila melano	0.786	0.773	0.441	5e-48
195582334	323	GD10772 [Drosophila simulans] gi|1941929	0.786	0.773	0.438	2e-47
195483544	323	GE12858 [Drosophila yakuba] gi|194176430	0.786	0.773	0.438	5e-47
194752788	327	GF12527 [Drosophila ananassae] gi|190619	0.789	0.767	0.430	9e-47
307174745	573	Syntaxin-6 [Camponotus floridanus]	0.632	0.350	0.397	1e-44
195401527	311	GJ17697 [Drosophila virilis] gi|19414237	0.764	0.781	0.428	2e-44

>gi|383858309|ref|XP_003704644.1| PREDICTED: uncharacterized protein LOC100875076 [Megachile rotundata]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/281 (43%), Positives = 166/281 (59%), Gaps = 56/281 (19%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASN-------ILRDELEWTTTELRNSLRSIEWDLED 53
           EV KA+NK R LY RW EL++    S        I RDELEWTTTELR +LRSIEWDL+D
Sbjct: 392 EVCKALNKNRGLYGRWTELQDVVVTSPNVSGGIPISRDELEWTTTELRKALRSIEWDLDD 451

Query: 54  LEDTINILYNNFDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSPVKISAPFG 113
           LEDTI+ILY    +  ++CM     Y R  ++                  +P K      
Sbjct: 452 LEDTIHILYITLTY--YVCM-----YIRIVEK------------------NPTKF----- 481

Query: 114 SSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQD----------SQLDMLSETIGTL 163
                   K++N+  +  RS++  +  +   M D+ +          ++  +L  +   +
Sbjct: 482 --------KIDNKELTVQRSFIEQTREEVKIMKDKMNLSRGRDRDNTARQPLLDNSPARV 533

Query: 164 TVQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNI 223
            V     TKYSKL N++DSPNR ++ +++ QQ+ M  QQD QLDM+ E+IGTLKTVSR I
Sbjct: 534 PVN-HGTTKYSKLENEIDSPNRQFLGDTLQQQNDMMRQQDEQLDMIGESIGTLKTVSRQI 592

Query: 224 GSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNG 264
            +ELDEQA+MLDE GNE+E T+SKLDATMKK+AKVLH+SNG
Sbjct: 593 NTELDEQAVMLDEFGNELEVTDSKLDATMKKMAKVLHMSNG 633

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195333305|ref|XP_002033332.1| GM21258 [Drosophila sechellia] gi|194125302|gb|EDW47345.1| GM21258 [Drosophila sechellia]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/301 (44%), Positives = 172/301 (57%), Gaps = 49/301 (16%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+NKTR LY RW EL E          E EWTTTELRNSLRSIEWDLEDLEDTI+I
Sbjct: 13  EVFKALNKTRGLYLRWRELGENGGT------EAEWTTTELRNSLRSIEWDLEDLEDTISI 66

Query: 61  LYNN--------------FDFIEHL-----CMKDTMNYSREKDRGGDHMSSKPLLSDDFH 101
           +  N                FI++       MKD M+ +R +DR  D  + +PLL +D H
Sbjct: 67  VEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLNRSRDR--DITAHQPLLDNDRH 124

Query: 102 SPSP-VKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETI 160
           SP+    I+ P  +S   +Y    +Q    +R++L    N  S + +      + ++ T+
Sbjct: 125 SPNHNHSIAIPNSNSNSNEY----HQHPHNDRTYLVECPNGNS-LINSGSQVANTIAGTM 179

Query: 161 GTLTVQVRRQ--TKYSKLNNQ--------------MDSPNRSWVSNSINQQSAMFDQQDS 204
                   R   TKYSKL N               MDSP+  +V  +++ Q  M   QD 
Sbjct: 180 SAAAAAASRHSGTKYSKLENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDE 239

Query: 205 QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNG 264
           QLDM+S++IGTLKTVSR IG ELDEQA+MLD+ GNE + TESKLD TMKKVAKVLH++NG
Sbjct: 240 QLDMISDSIGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNG 299

Query: 265 E 265
           E
Sbjct: 300 E 300

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|60678081|gb|AAX33547.1| LD12915p [Drosophila melanogaster]

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/299 (44%), Positives = 170/299 (56%), Gaps = 49/299 (16%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+NKTR LY RW EL E          E EWTTTELRNSLRSIEWDLEDLEDTI+I
Sbjct: 58  EVFKALNKTRGLYLRWRELGENGGT------EAEWTTTELRNSLRSIEWDLEDLEDTISI 111

Query: 61  LYNN--------------FDFIEHL-----CMKDTMNYSREKDRGGDHMSSKPLLSDDFH 101
           +  N                FI++       MKD M+ +R +DR  D  + +PLL +D H
Sbjct: 112 VEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLNRSRDR--DITAHQPLLDNDRH 169

Query: 102 SPSP-VKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETI 160
           SP+    I+ P  +S   +Y    +Q    +R++L    N  S + +      + ++ T+
Sbjct: 170 SPNHNHSIAIPNSNSNSNEY----HQHPHNDRTYLVECPNGNS-LINSGSQVANTIAGTM 224

Query: 161 GTLTVQVRRQ--TKYSKLNNQ--------------MDSPNRSWVSNSINQQSAMFDQQDS 204
                   R   TKYSKL N               MDSP+  +V  +++ Q  M   QD 
Sbjct: 225 SAAAAAASRHSGTKYSKLENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDE 284

Query: 205 QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           QLDM+S++IGTLKTVSR IG ELDEQA+MLD+ GNE + TESKLD TMKKVAKVLH++N
Sbjct: 285 QLDMISDSIGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNN 343

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552585|ref|NP_995816.1| syntaxin 6, isoform E [Drosophila melanogaster] gi|19528297|gb|AAL90263.1| HL02043p [Drosophila melanogaster] gi|21627457|gb|AAM68721.1| syntaxin 6, isoform E [Drosophila melanogaster]

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/299 (44%), Positives = 170/299 (56%), Gaps = 49/299 (16%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+NKTR LY RW EL E          E EWTTTELRNSLRSIEWDLEDLEDTI+I
Sbjct: 29  EVFKALNKTRGLYLRWRELGENGGT------EAEWTTTELRNSLRSIEWDLEDLEDTISI 82

Query: 61  LYNN--------------FDFIEHL-----CMKDTMNYSREKDRGGDHMSSKPLLSDDFH 101
           +  N                FI++       MKD M+ +R +DR  D  + +PLL +D H
Sbjct: 83  VEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLNRSRDR--DITAHQPLLDNDRH 140

Query: 102 SPSP-VKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETI 160
           SP+    I+ P  +S   +Y    +Q    +R++L    N  S + +      + ++ T+
Sbjct: 141 SPNHNHSIAIPNSNSNSNEY----HQHPHNDRTYLVECPNGNS-LINSGSQVANTIAGTM 195

Query: 161 GTLTVQVRRQ--TKYSKLNNQ--------------MDSPNRSWVSNSINQQSAMFDQQDS 204
                   R   TKYSKL N               MDSP+  +V  +++ Q  M   QD 
Sbjct: 196 SAAAAAASRHSGTKYSKLENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDE 255

Query: 205 QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           QLDM+S++IGTLKTVSR IG ELDEQA+MLD+ GNE + TESKLD TMKKVAKVLH++N
Sbjct: 256 QLDMISDSIGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNN 314

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552581|ref|NP_995814.1| syntaxin 6, isoform D [Drosophila melanogaster] gi|194884099|ref|XP_001976133.1| GG20169 [Drosophila erecta] gi|21627456|gb|AAM68720.1| syntaxin 6, isoform D [Drosophila melanogaster] gi|25012644|gb|AAN71418.1| RE48509p [Drosophila melanogaster] gi|190659320|gb|EDV56533.1| GG20169 [Drosophila erecta] gi|220950550|gb|ACL87818.1| Syx6-PB [synthetic construct] gi|220959400|gb|ACL92243.1| Syx6-PB [synthetic construct]

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 132/299 (44%), Positives = 170/299 (56%), Gaps = 49/299 (16%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+NKTR LY RW EL E          E EWTTTELRNSLRSIEWDLEDLEDTI+I
Sbjct: 13  EVFKALNKTRGLYLRWRELGENGGT------EAEWTTTELRNSLRSIEWDLEDLEDTISI 66

Query: 61  LYNN--------------FDFIEHL-----CMKDTMNYSREKDRGGDHMSSKPLLSDDFH 101
           +  N                FI++       MKD M+ +R +DR  D  + +PLL +D H
Sbjct: 67  VEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLNRSRDR--DITAHQPLLDNDRH 124

Query: 102 SPSP-VKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETI 160
           SP+    I+ P  +S   +Y    +Q    +R++L    N  S + +      + ++ T+
Sbjct: 125 SPNHNHSIAIPNSNSNSNEY----HQHPHNDRTYLVECPNGNS-LINSGSQVANTIAGTM 179

Query: 161 GTLTVQVRRQ--TKYSKLNNQ--------------MDSPNRSWVSNSINQQSAMFDQQDS 204
                   R   TKYSKL N               MDSP+  +V  +++ Q  M   QD 
Sbjct: 180 SAAAAAASRHSGTKYSKLENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDE 239

Query: 205 QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           QLDM+S++IGTLKTVSR IG ELDEQA+MLD+ GNE + TESKLD TMKKVAKVLH++N
Sbjct: 240 QLDMISDSIGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNN 298

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195582334|ref|XP_002080983.1| GD10772 [Drosophila simulans] gi|194192992|gb|EDX06568.1| GD10772 [Drosophila simulans]

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/299 (43%), Positives = 170/299 (56%), Gaps = 49/299 (16%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+NKTR LY RW EL E          E EWTTTELRNS+RSIEWDLEDLEDTI+I
Sbjct: 13  EVFKALNKTRGLYLRWRELGENRGK------EAEWTTTELRNSVRSIEWDLEDLEDTISI 66

Query: 61  LYNN--------------FDFIEHL-----CMKDTMNYSREKDRGGDHMSSKPLLSDDFH 101
           +  N                FI++       MKD M+ +R +DR  D  + +PLL +D H
Sbjct: 67  VEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLNRSRDR--DITAHQPLLDNDRH 124

Query: 102 SPSP-VKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETI 160
           SP+    I+ P  +S   +Y    +Q    +R++L    N  S + +      + ++ T+
Sbjct: 125 SPNHNHSIAIPNSNSNSNEY----HQHPHNDRTYLVECPNGNS-LINSGSQVANTIAGTM 179

Query: 161 GTLTVQVRRQ--TKYSKLNNQ--------------MDSPNRSWVSNSINQQSAMFDQQDS 204
                   R   TKYSKL N               MDSP+  +V  +++ Q  M   QD 
Sbjct: 180 SAAAAAASRPSGTKYSKLENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDE 239

Query: 205 QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           QLDM+S++IGTLKTVSR IG ELDEQA+MLD+ GNE + TESKLD TMKKVAKVLH++N
Sbjct: 240 QLDMISDSIGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNN 298

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195483544|ref|XP_002090329.1| GE12858 [Drosophila yakuba] gi|194176430|gb|EDW90041.1| GE12858 [Drosophila yakuba]

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 131/299 (43%), Positives = 169/299 (56%), Gaps = 49/299 (16%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+NKTR LY RW EL E          E EWTTTELRNSLRSIEWDLEDLEDTI+I
Sbjct: 13  EVFKALNKTRGLYLRWRELGENGGT------EAEWTTTELRNSLRSIEWDLEDLEDTISI 66

Query: 61  LYNN--------------FDFIEHL-----CMKDTMNYSREKDRGGDHMSSKPLLSDDFH 101
           +  N                FI++       MKD M+ +R +DR  D  + +PLL +D  
Sbjct: 67  VEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLNRSRDR--DITAHQPLLDNDRQ 124

Query: 102 SPSP-VKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETI 160
           SP+    I+ P  +S   +Y    +Q    +R++L    N  S + +      + ++ T+
Sbjct: 125 SPNHNHSIAIPNSNSNSNEY----HQHPHNDRTYLVECPNGNS-LINSGSQVANTIAGTM 179

Query: 161 GTLTVQVRRQ--TKYSKLNNQ--------------MDSPNRSWVSNSINQQSAMFDQQDS 204
                   R   TKYSKL N               MDSP+  +V  +++ Q  M   QD 
Sbjct: 180 SAAAAAASRHSGTKYSKLENALDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDE 239

Query: 205 QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           QLDM+S++IGTLKTVSR IG ELDEQA+MLD+ GNE + TESKLD TMKKVAKVLH++N
Sbjct: 240 QLDMISDSIGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNN 298

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194752788|ref|XP_001958701.1| GF12527 [Drosophila ananassae] gi|190619999|gb|EDV35523.1| GF12527 [Drosophila ananassae]

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 130/302 (43%), Positives = 173/302 (57%), Gaps = 51/302 (16%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+NKTR LY RW EL E   A      E+EWTTTELRNSLRSIEWDLEDLEDTI+I
Sbjct: 13  EVFKALNKTRGLYLRWRELGESGGA------EVEWTTTELRNSLRSIEWDLEDLEDTISI 66

Query: 61  LYNN--------------FDFIEHL-----CMKDTMNYSREKDRGGDHMSSKPLLSDDFH 101
           +  N                FI++       MKD M+ +R +DR  D  + +PLL ++ H
Sbjct: 67  VEKNPSKFWIDNRELSSRRHFIDNTRDEVKQMKDKMSLNRSRDR--DITAHQPLLDNERH 124

Query: 102 SPSP-VKISAPFGSSRQTKYSKLNNQMDSPNRSWL---SNSINQQSAMFDQQDSQLDMLS 157
           SP+    I+    +S   +Y    +Q    +R++L    + +N  S +     +  + ++
Sbjct: 125 SPNHNHSIAITSLNSNSNEY----HQHPHNDRTYLVECPSGLNGNSLINSGSQAVANTIA 180

Query: 158 ETIGTLTVQVRRQ--TKYSKLNNQMDSPNR--------------SWVSNSINQQSAMFDQ 201
            T+        R   TKYSKL N +DSP+                +V  +++ Q  M   
Sbjct: 181 GTMSAAAAAASRHSGTKYSKLENALDSPSHYGQSHHGGLDSPSHRYVGETVSIQQRMIQG 240

Query: 202 QDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261
           QD QLDM+S++IGTLKTVSR IG ELDEQA+MLD+ GNE + TESKLD TMKKVAKVLH+
Sbjct: 241 QDEQLDMISDSIGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHM 300

Query: 262 SN 263
           +N
Sbjct: 301 NN 302

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174745|gb|EFN65100.1| Syntaxin-6 [Camponotus floridanus]

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/312 (39%), Positives = 155/312 (49%), Gaps = 111/312 (35%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNI----------------LRDELEWTTTELRNSL 44
           EV KA+NK R LY RW EL++    S I                  DEL+WTTTELR +L
Sbjct: 280 EVCKALNKNRGLYGRWSELQDVGITSPIGGGAPMSGSATAPPISRTDELDWTTTELRKAL 339

Query: 45  RSIEWDLEDLEDTINILYNNFDFIEHL--------------------------------C 72
           RSIEWDL+DLEDTI IL+ +   I H                                  
Sbjct: 340 RSIEWDLDDLEDTIYILFPSIRRITHQGIVEKNPTKFKIDNKELTVQRSFIEQAREEVKI 399

Query: 73  MKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSPVKISAPFGSSRQTKYSKLNNQMDSPNR 132
           MKD +N SR +DR  D+ + +PLL +     SP ++    G+   TKYSKL N++DSPNR
Sbjct: 400 MKDKLNLSRSRDR--DNTARQPLLDN-----SPARVPTNHGT---TKYSKLENEIDSPNR 449

Query: 133 SWLSNSINQQSAMFDQQDSQLDMLSETIGTLTVQVRRQTKYSKLNNQMDSPNRSWVSNSI 192
            +LS+++ QQ+ M  QQD QLDM+ ET+GTL   V RQ                      
Sbjct: 450 QFLSDTLQQQNTMIMQQDEQLDMIGETVGTLKT-VSRQ---------------------- 486

Query: 193 NQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATM 252
                                         I SELDEQA+MLDE GNE+E T+SKLDATM
Sbjct: 487 ------------------------------INSELDEQAVMLDEFGNELETTDSKLDATM 516

Query: 253 KKVAKVLHISNG 264
           KK+AKVLH+SNG
Sbjct: 517 KKMAKVLHMSNG 528

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195401527|ref|XP_002059364.1| GJ17697 [Drosophila virilis] gi|194142370|gb|EDW58776.1| GJ17697 [Drosophila virilis]

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/294 (42%), Positives = 165/294 (56%), Gaps = 51/294 (17%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
           EV KA+NKTR LY RW EL E   A      E+EWTTTELRNSLRSIEWDLEDLED I+I
Sbjct: 13  EVFKALNKTRGLYLRWRELGENGGA------EVEWTTTELRNSLRSIEWDLEDLEDAISI 66

Query: 61  LYNN--------------FDFIEHL-----CMKDTMNYSREKDRGGDHMSSKPLLSDDFH 101
           +  N                FI++       MKD M+ +R +DR  D  + +PLL ++  
Sbjct: 67  VEKNPTKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLNRNRDR--DITAHQPLLENETR 124

Query: 102 SPSPVKISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIG 161
           + S   ++     S+  +Y   +N     +R++L +  N QS      ++    +S    
Sbjct: 125 NHS---LNHSQNHSQANEYHTSHN-----DRAYLVDCPNPQSVA----NTIAGTMSAAAA 172

Query: 162 TLTVQVRRQTKYSKLNNQMD------------SPNRSWVSNSINQQSAMFDQQDSQLDML 209
                    TKYSKL N +D            SP   +V  +++ Q  M   QD QLDM+
Sbjct: 173 AAAATRHSGTKYSKLENALDIDSPSHYGGSLDSPGHRYVGETVSIQQRMIQGQDEQLDMI 232

Query: 210 SETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISN 263
           S++IGTLKTVSR IG ELDEQA+MLD+ GNE + TESKLD TMKKVAKVLH++N
Sbjct: 233 SDSIGTLKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNN 286

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
FB|FBgn0037084	368	Syx6 "Syntaxin 6" [Drosophila	0.817	0.706	0.369	6.7e-33
UNIPROTKB|F1NCD1	255	STX6 "Syntaxin-6" [Gallus gall	0.506	0.631	0.375	5.5e-22
ZFIN|ZDB-GENE-030131-858	256	stx6 "syntaxin 6" [Danio rerio	0.506	0.628	0.350	1.9e-21
UNIPROTKB|Q5ZL19	254	STX6 "Syntaxin-6" [Gallus gall	0.506	0.633	0.372	3e-21
UNIPROTKB|A2VE18	255	STX6 "Uncharacterized protein"	0.506	0.631	0.358	1.7e-20
UNIPROTKB|O43752	255	STX6 "Syntaxin-6" [Homo sapien	0.506	0.631	0.364	1.7e-20
UNIPROTKB|E2RCG5	255	STX6 "Uncharacterized protein"	0.506	0.631	0.364	2.1e-20
UNIPROTKB|F1S678	255	STX6 "Uncharacterized protein"	0.506	0.631	0.358	4.4e-20
UNIPROTKB|F1PWH1	256	STX6 "Uncharacterized protein"	0.506	0.628	0.362	7.2e-20
MGI|MGI:1926235	255	Stx6 "syntaxin 6" [Mus musculu	0.506	0.631	0.346	1.5e-19

FB|FBgn0037084 Syx6 "Syntaxin 6" [Drosophila melanogaster (taxid:7227)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 119/322 (36%), Positives = 167/322 (51%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+NKTR LY RW EL E          E EWTTTELRNSLRSIEWDLEDLEDTI+I
Sbjct:    58 EVFKALNKTRGLYLRWRELGENGGT------EAEWTTTELRNSLRSIEWDLEDLEDTISI 111

Query:    61 LYNN-----FD---------FIEHLC-----MKDTMNYSREKDRGGDHMSSKPLLSDDFH 101
             +  N      D         FI++       MKD M+ +R +DR  D  + +PLL +D H
Sbjct:   112 VEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKDKMSLNRSRDR--DITAHQPLLDNDRH 169

Query:   102 SPSPV-KISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQL-DMLSET 159
             SP+    I+ P  +S   +Y    +Q    +R++L    N  S +     SQ+ + ++ T
Sbjct:   170 SPNHNHSIAIPNSNSNSNEY----HQHPHNDRTYLVECPNGNSLI--NSGSQVANTIAGT 223

Query:   160 IGTLTVQVRRQ--TKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLK 217
             +        R   TKYSKL N +DSP+    ++       M D    +   + ET+   +
Sbjct:   224 MSAAAAAASRHSGTKYSKLENALDSPSHYGQTH----HGGM-DSPSHRY--VGETVSIQQ 276

Query:   218 TVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE---MLDEMGNEM 274
              + +    +LD   ++ D +G            T+K V++ + +   E   MLD+ GNE 
Sbjct:   277 RMIQGQDEQLD---MISDSIG------------TLKTVSRQIGVELDEQAVMLDDFGNEF 321

Query:   275 ECTESKLDATMKKVAKVLHISN 296
             + TESKLD TMKKVAKVLH++N
Sbjct:   322 DTTESKLDTTMKKVAKVLHMNN 343

GO:0005484 "SNAP receptor activity" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=ISS;NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=ISS

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

UNIPROTKB|F1NCD1 STX6 "Syntaxin-6" [Gallus gallus (taxid:9031)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 65/173 (37%), Positives = 101/173 (58%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+N  + L++RW EL ++   S   R+E++WTT ELRN+LRSIEWDLEDL++TINI
Sbjct:    13 EVQKAVNTAQGLFQRWTELLQDP--SIATREEIDWTTNELRNNLRSIEWDLEDLDETINI 70

Query:    61 LYN------NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPV-KISA 110
             L        N D  E    K  +  +R+  R   D MS+  +  L++  +  + + + S+
Sbjct:    71 LSGANPRKFNLDATELGIRKSFITSTRQVVREMKDQMSNSSMQALAERKNRQALLGESSS 130

Query:   111 PFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTL 163
                SS   KYS+L+ ++   N  ++     QQ  + +QQD QL+++S +IG L
Sbjct:   131 QSWSSGPDKYSRLDRELQLANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL 183

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0032588 "trans-Golgi network membrane" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-030131-858 stx6 "syntaxin 6" [Danio rerio (taxid:7955)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 61/174 (35%), Positives = 98/174 (56%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+N  + L++RW+EL ++  A    ++E++WTT ELRNSLRSIEWDLEDL++TI+I
Sbjct:    13 EVQKAVNTAQGLHQRWIELLQD--AGGASKEEVDWTTNELRNSLRSIEWDLEDLDETISI 70

Query:    61 LY-N----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPLLSDDFHSPSPVKIS----- 109
             +  N    N D +E    K  +  +R+  R   DHM+S   ++          +      
Sbjct:    71 VEANPKKFNLDAMELAKRKAFITSTRQTVREMKDHMTSPMAITVPEKKNRQTLMGEGGSR 130

Query:   110 APFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTL 163
              P       KY++L+N++ + N  ++     QQ  + ++QD  L+++S TIG L
Sbjct:   131 GPIWQPSGEKYTRLDNELQTANSQFIEEQQTQQQLIAEKQDEHLELVSGTIGVL 184

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q5ZL19 STX6 "Syntaxin-6" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 64/172 (37%), Positives = 102/172 (59%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+N  + L++RW EL ++   S   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct:    13 EVQKAVNTAQGLFQRWTELLQDP--SIATREEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query:    61 LY-N----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPV-KISAP 111
             +  N    N D  E    K  +  +R+  R   D MS+  +  L++  +  + + + S+ 
Sbjct:    71 VEANPRKFNLDATELGIRKSFITSTRQVVREMKDQMSNSSMQALAERKNRQALLGESSSQ 130

Query:   112 FGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTL 163
               SS   KYS+L+ ++   N  ++     QQ  + +QQD QL+++S +IG L
Sbjct:   131 SWSSGPDKYSRLDRELQLANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL 182

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005769 "early endosome" evidence=ISS

GO:0006906 "vesicle fusion" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0007032 "endosome organization" evidence=ISS

UNIPROTKB|A2VE18 STX6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 62/173 (35%), Positives = 99/173 (57%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+N  + L++RW EL ++   S   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct:    13 EVQKAVNTAQGLFQRWTELLQDP--STATREEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query:    61 LY-N----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPVKISAP- 111
             +  N    N D  E    K  +  +R+  R   D MS+  +  L++  +  + +  S   
Sbjct:    71 VEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSASSVQALAERKNRQALLGDSGGQ 130

Query:   112 -FGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTL 163
              + S    KY +L+ ++   N  ++     QQ  + +QQD QL+++S +IG L
Sbjct:   131 NWSSGTTDKYGRLDRELQLANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL 183

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0032588 "trans-Golgi network membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|O43752 STX6 "Syntaxin-6" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 63/173 (36%), Positives = 99/173 (57%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+N  + L++RW EL ++   S   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct:    13 EVQKAVNTAQGLFQRWTELLQDP--STATREEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query:    61 LY-N----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPVKISAPF 112
             +  N    N D  E    K  +  +R+  R   D MS+  +  L++  +  + +  S   
Sbjct:    71 VEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNRQALLGDSGSQ 130

Query:   113 GSSRQT--KYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTL 163
               S  T  KY +L+ ++   N  ++     QQ  + +QQD QL+++S +IG L
Sbjct:   131 NWSTGTTDKYGRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL 183

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0006906 "vesicle fusion" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=TAS

GO:0030136 "clathrin-coated vesicle" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP

GO:0031201 "SNARE complex" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=ISS

UNIPROTKB|E2RCG5 STX6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 63/173 (36%), Positives = 99/173 (57%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+N  + L++RW EL ++   S   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct:    13 EVQKAVNTAQGLFQRWTELLQDP--STATREEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query:    61 LY-N----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPVKISAPF 112
             +  N    N D  E    K  +  +R+  R   D MS+  +  L++  +  + +  S   
Sbjct:    71 VEANPRKFNLDATELSIRKTFITSTRQVVRDMKDQMSASSVQALAERKNRQALLGDSGGQ 130

Query:   113 GSSRQT--KYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTL 163
               S  T  KY +L+ ++   N  ++     QQ  + +QQD QL+++S +IG L
Sbjct:   131 NWSTGTTDKYGRLDRELQLANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL 183

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|F1S678 STX6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 62/173 (35%), Positives = 99/173 (57%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+N  + L++RW EL ++   +   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct:    13 EVQKAVNTAQGLFQRWTELLQDPTTAT--REEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query:    61 LY-N----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPVKISAPF 112
             +  N    N D  E    K  +  +R+  R   D MS+  +  L++  +  + +  S   
Sbjct:    71 VEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSIQALAERKNRQALLGDSGGQ 130

Query:   113 GSSRQT--KYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTL 163
               S  T  KY +L+ ++   N  ++     QQ  + +QQD QL+++S +IG L
Sbjct:   131 NWSTGTTDKYGRLDRELQLANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL 183

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0032588 "trans-Golgi network membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

UNIPROTKB|F1PWH1 STX6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 63/174 (36%), Positives = 99/174 (56%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+N  + L++RW EL ++   S   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct:    13 EVQKAVNTAQGLFQRWTELLQDP--STATREEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query:    61 LY-N----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPVKISAPF 112
             +  N    N D  E    K  +  +R+  R   D MS+  +  L++  +  + +  S   
Sbjct:    71 VEANPRKFNLDATELSIRKTFITSTRQVVRDMKDQMSASSVQALAERKNRQALLGDSGGQ 130

Query:   113 GSSRQT--KYSKLNNQMDSPNRSWLSNS-INQQSAMFDQQDSQLDMLSETIGTL 163
               S  T  KY +L+ ++   N  ++      QQ  + +QQD QL+++S +IG L
Sbjct:   131 NWSTGTTDKYGRLDRELQLANSHFIEEQQAQQQQLIVEQQDEQLELVSGSIGVL 184

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

MGI|MGI:1926235 Stx6 "syntaxin 6" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 60/173 (34%), Positives = 99/173 (57%)

Query:     1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
             EV KA+N  + L++RW EL +   A+   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct:    13 EVQKAVNTAQGLFQRWTELLQGPSAAT--REEIDWTTNELRNNLRSIEWDLEDLDETISI 70

Query:    61 LY-N----NFDFIEHLCMKDTMNYSREKDRG-GDHMSSKPL--LSDDFHSPSPV--KISA 110
             +  N    N D  E    K  +  +R+  R   D MS+  +  L++  +  + +    S 
Sbjct:    71 VEANPRKFNLDATELSIRKAFITSTRQIVRDMKDQMSASSVQALAERKNRQALLGDSSSQ 130

Query:   111 PFGSSRQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTL 163
              + +    +Y +L+ ++   N  ++     QQ  + +QQD QL+++S +IG L
Sbjct:   131 SWNAGVADRYGRLDRELQLANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVL 183

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005769 "early endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=ISO

GO:0007032 "endosome organization" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO

GO:0032588 "trans-Golgi network membrane" evidence=ISO;IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63635	STX6_RAT	No assigned EC number	0.3233	0.6761	0.8431	yes	N/A
O43752	STX6_HUMAN	No assigned EC number	0.3150	0.6540	0.8156	yes	N/A
Q5R6Q2	STX6_PONAB	No assigned EC number	0.3150	0.6540	0.8156	yes	N/A
Q5ZL19	STX6_CHICK	No assigned EC number	0.3161	0.6540	0.8188	yes	N/A
Q9JKK1	STX6_MOUSE	No assigned EC number	0.3076	0.6540	0.8156	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	318
pfam09177	96	pfam09177, Syntaxin-6_N, Syntaxin 6, N-terminal	2e-13
pfam05739	62	pfam05739, SNARE, SNARE domain	3e-09
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	2e-06
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	3e-06

>gnl|CDD|220133 pfam09177, Syntaxin-6_N, Syntaxin 6, N-terminal

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 5/64 (7%)

Query: 1  EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
          EV K+I+K RSLY+ WL ++     S+    EL+  T ELRN+L SIEWDLEDLE+ +++
Sbjct: 9  EVQKSIDKLRSLYRSWLRIR-----SDSNSPELDELTKELRNALESIEWDLEDLEEAVSV 63

Query: 61 LYNN 64
          +  N
Sbjct: 64 VEAN 67

Members of this family, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport. Length = 96

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 17/62 (27%), Positives = 36/62 (58%)

Query: 202 QDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI 261
           +D  L+ L  +IG LK +  ++G E++EQ  +LD + + ++ T+S+++   K++ K    
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 262 SN 263
             
Sbjct: 61  QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 37/65 (56%)

Query: 194 QQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMK 253
           Q  A  +++D +L+ L ++I  LK +  ++G+EL+EQ   LD + + ++  +  L    K
Sbjct: 2   QALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANK 61

Query: 254 KVAKV 258
           ++ K 
Sbjct: 62  RLKKA 66

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 15/59 (25%), Positives = 35/59 (59%)

Query: 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258
            ++D +L+ L  +IG LK +  ++G+E++EQ  +LD + + ++  +  +    K++ K 
Sbjct: 2   QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
KOG3202|consensus	235		99.97
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	99.61
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.22
KOG3385|consensus	118		99.2
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	98.92
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	98.9
KOG3065|consensus	273		98.63
KOG0812|consensus	311		98.2
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	97.79
KOG3202|consensus	235		97.51
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	96.98
KOG0809|consensus	305		96.05
KOG0810|consensus	297		95.8
KOG0811|consensus	269		94.97
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	94.01
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	93.67
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	93.22
KOG2678|consensus	244		92.79

>KOG3202|consensus

Probab=99.97  E-value=1.6e-29  Score=233.58  Aligned_cols=216  Identities=31%  Similarity=0.350  Sum_probs=159.8

Q ss_pred             CHHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccchhhh
Q psy15562          1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYS   80 (318)
Q Consensus         1 EV~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~e~~   80 (318)
                      |+.+.++.++++|+||.++...+      .+++.|++..|+   ++|+|+++||+++|.+++++|..|++    ++.++.
T Consensus        14 e~~k~~~~~~~~~~r~~~~~~~~------~~~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~~~~~i----de~El~   80 (235)
T KOG3202|consen   14 ETLKLSEEIQGLYQRRSELLKDT------GSDAEELTSVLR---RSIEEDLEDLDELISILERNPSKFGI----DEFELS   80 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc------cchhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCcccccC----cHHHHH
Confidence            57899999999999999998873      248999999999   99999999999999999999998888    777777


Q ss_pred             hhhccCCCccccccccccCCCCCCCCcccCCCCCCccchhhh--hhhccCCCCcccchhchhHHHHhhhhhhhhhhhhhh
Q psy15562         81 REKDRGGDHMSSKPLLSDDFHSPSPVKISAPFGSSRQTKYSK--LNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSE  158 (318)
Q Consensus        81 ~~~~~~~ei~~r~~ll~~~~~~~~~~~~~~~~~~~~~~~y~k--l~~~~~s~~~~~~~~~~~qq~ll~~~qd~ql~~v~~  158 (318)
                      +|+++   |.+.+.-+....                 .+...  +.   ++.+++.+                       
T Consensus        81 ~R~~~---i~~lr~q~~~~~-----------------~~~~~~~~~---~~~~r~~l-----------------------  114 (235)
T KOG3202|consen   81 RRRRF---IDNLRTQLRQMK-----------------SKMAMSGFA---NSNIRDIL-----------------------  114 (235)
T ss_pred             HHHHH---HHHHHHHHHHHH-----------------HHHHhhccc---cccchhhh-----------------------
Confidence            77766   444443333210                 00000  00   00000000                       


Q ss_pred             hhcccccccccccc-cccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy15562        159 TIGTLTVQVRRQTK-YSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEM  237 (318)
Q Consensus       159 sig~~k~s~~~~~~-y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL  237 (318)
                            ++.+..+. ........+.+   +++...+.|++||++||++||.|+++|+++|+||..||+||++|+.|||+|
T Consensus       115 ------~~~~~~~~~~~~~~~~~~~D---~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl  185 (235)
T KOG3202|consen  115 ------LGPEKSPNLDEAMSRASGLD---NVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDL  185 (235)
T ss_pred             ------cCCCCCCchhhhHHHhhccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                  11000000 11111111111   277888999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhhhhhHHHHHHHHHHhhcCCcccccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q psy15562        238 GNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDATMKKVAKVLHISNVFC  299 (318)
Q Consensus       238 ~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  299 (318)
                      +++||+|.+||+++++++.+|.+++               ++|.+|||+-.+.++-+..|++
T Consensus       186 ~~e~d~t~srl~~~~~~l~~v~~~~---------------s~~~~~~~il~l~~~~~lvv~i  232 (235)
T KOG3202|consen  186 DNEMDRTESRLDRVMKRLAKVNRMA---------------SQCSQWCAILLLVGLLLLVVII  232 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---------------ccccchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999976               6777788888777766555544

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=99.61  E-value=6.8e-16  Score=124.88  Aligned_cols=77  Identities=40%  Similarity=0.724  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccchhhh
Q psy15562          1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYS   80 (318)
Q Consensus         1 EV~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~e~~   80 (318)
                      ||+++|++++++|.+|..+...+.    +++|+.|+++||+++|.+|+|||+||++||.|||+||+.|+|    +..++.
T Consensus         9 ev~~sl~~l~~~~~~~~~~~~~~~----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l----~~~Ei~   80 (97)
T PF09177_consen    9 EVQSSLDRLESLYRRWQRLRSDTS----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNL----SEEEIS   80 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-----HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC----CHHHHH
Confidence            699999999999999999988773    689999999999999999999999999999999999998888    666777


Q ss_pred             hhhcc
Q psy15562         81 REKDR   85 (318)
Q Consensus        81 ~~~~~   85 (318)
                      +||+|
T Consensus        81 ~Rr~f   85 (97)
T PF09177_consen   81 RRRQF   85 (97)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77766

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.22  E-value=7.1e-11  Score=87.43  Aligned_cols=62  Identities=32%  Similarity=0.525  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhc
Q psy15562        201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHIS  262 (318)
Q Consensus       201 eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s  262 (318)
                      ++|+.|+.|+.+|..|++++..||.||++|+.|||+|++.||+|..+|..++++|.++.+..
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~   62 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999999999999998764

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>KOG3385|consensus

Probab=99.20  E-value=4.3e-11  Score=99.49  Aligned_cols=85  Identities=21%  Similarity=0.284  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCc-ccccccchhhhcc
Q psy15562        200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE-MLDEMGNEMECTE  278 (318)
Q Consensus       200 ~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r-~c~~~~~~~~~~~  278 (318)
                      .|.|+.++.|.+.|..||.++..||+|++.||++||.+++++|+|.+.|..+|.|++.+.+.++-+ +|           
T Consensus        32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~-----------  100 (118)
T KOG3385|consen   32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLC-----------  100 (118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHH-----------
Confidence            688999999999999999999999999999999999999999999999999999999999983322 66           


Q ss_pred             cchhhHHHHHHHHHHHHHhhh
Q psy15562        279 SKLDATMKKVAKVLHISNVFC  299 (318)
Q Consensus       279 ~k~~~~~~~~~~~~~~~~~~~  299 (318)
                          |.+...+.++||+.+++
T Consensus       101 ----~m~~f~lV~~fi~~~~l  117 (118)
T KOG3385|consen  101 ----WMAVFSLVAFFILWVWL  117 (118)
T ss_pred             ----HHHHHHHHHHHHhheee
Confidence                55566666677766654

>smart00397 t_SNARE Helical region found in SNAREs

Probab=98.92  E-value=5.1e-09  Score=76.81  Aligned_cols=63  Identities=29%  Similarity=0.523  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562        195 QSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK  257 (318)
Q Consensus       195 Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~  257 (318)
                      +..+++++|+.|+.|+.+|..+++++..|+.||.+|+.+||.+++.+|.+...+..+.+++.+
T Consensus         3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            567899999999999999999999999999999999999999999999999999999999875

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=98.90  E-value=5.1e-09  Score=75.67  Aligned_cols=58  Identities=26%  Similarity=0.552  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562        200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK  257 (318)
Q Consensus       200 ~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~  257 (318)
                      +++|+.|+.|+.+|..|+.++..|+.||.+|+.+||.++..+|++..++..+++++.+
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k   59 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK   59 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999999999976

>KOG3065|consensus

Probab=98.63  E-value=7e-08  Score=91.81  Aligned_cols=59  Identities=31%  Similarity=0.533  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHH
Q psy15562        201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVL  259 (318)
Q Consensus       201 eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl  259 (318)
                      ++|+.|+.|++.+++||.||.+||.||+.||..||.|.+.+|+...++..+++|+++++
T Consensus       215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl  273 (273)
T KOG3065|consen  215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL  273 (273)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999875

>KOG0812|consensus

Probab=98.20  E-value=0.0003  Score=67.26  Aligned_cols=94  Identities=17%  Similarity=0.239  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCc
Q psy15562        193 NQQSAMFDQQDS-------QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE  265 (318)
Q Consensus       193 q~Qq~~m~eQDe-------~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r  265 (318)
                      ++|..+|+++|+       .+..|..+|..|+++=..+-.=+.+|.+++..+|+.||.+...+..+..-|-+.+..    
T Consensus       209 qqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~----  284 (311)
T KOG0812|consen  209 QQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFER----  284 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHH----
Confidence            667777777754       466788888888888888888899999999999999999999999999999988776    


Q ss_pred             ccccccchhhhcccchhhHHHHHHHHHHHHHhhhhhc
Q psy15562        266 MLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYE  302 (318)
Q Consensus       266 ~c~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  302 (318)
                                  .|+--|.|.||.+||++|.+||++-
T Consensus       285 ------------vSSNRwLmvkiF~i~ivFflvfvlf  309 (311)
T KOG0812|consen  285 ------------VSSNRWLMVKIFGILIVFFLVFVLF  309 (311)
T ss_pred             ------------hccchHHHHHHHHHHHHHHHHHHHh
Confidence                        6888999999999999999999863

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=97.79  E-value=0.0002  Score=67.10  Aligned_cols=95  Identities=18%  Similarity=0.130  Sum_probs=76.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCcc
Q psy15562        187 WVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEM  266 (318)
Q Consensus       187 fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~  266 (318)
                      -++..++.|+   ..|++--+.+..-...||+.+..++.=|.+-+.+|+.....+|+....|..+.+|+....+++.+  
T Consensus       153 ~~e~~l~~~~---~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--  227 (251)
T PF09753_consen  153 SLEKILQHHR---NLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--  227 (251)
T ss_pred             cHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence            3444444444   35777788888889999999999999999999999999999999999999999999998876533  


Q ss_pred             cccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q psy15562        267 LDEMGNEMECTESKLDATMKKVAKVLHISNVFC  299 (318)
Q Consensus       267 c~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  299 (318)
                      |+             .|.|+.+..++||+.+||
T Consensus       228 ~~-------------~~~~i~~v~~~Fi~mvl~  247 (251)
T PF09753_consen  228 CW-------------TWLMIFVVIIVFIMMVLF  247 (251)
T ss_pred             HH-------------HHHHHHHHHHHHHHHHHH
Confidence            43             366777777777777666

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG3202|consensus

Probab=97.51  E-value=0.00022  Score=66.77  Aligned_cols=155  Identities=19%  Similarity=0.242  Sum_probs=97.3

Q ss_pred             hhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCC--ceee-----ecccccchhhhhhhccCCCccccccccccCCCCC
Q psy15562         31 DELEWTTTELRNSLRSIEWDLEDLEDTINILYNNF--DFIE-----HLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSP  103 (318)
Q Consensus        31 ~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP--~f~~-----i~e~k~~~e~~~~~~~~~ei~~r~~ll~~~~~~~  103 (318)
                      ..+.|+..+|...+.-++.++...-  |.--|-..  .|++     +.+|+..+....   + ++...+..+++..    
T Consensus        49 ~~i~~~~edl~~~~~il~~~~~~~~--ide~El~~R~~~i~~lr~q~~~~~~~~~~~~---~-~~~~~r~~l~~~~----  118 (235)
T KOG3202|consen   49 RSIEEDLEDLDELISILERNPSKFG--IDEFELSRRRRFIDNLRTQLRQMKSKMAMSG---F-ANSNIRDILLGPE----  118 (235)
T ss_pred             HHhHHHHHHHHHHHHHHHhCccccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c-ccccchhhhcCCC----
Confidence            3678889999999988888887653  33333222  2443     556666554311   0 1111122233211    


Q ss_pred             CCCcccCCCCCC---ccchhhhhhhccCCCCcccchhchhHHHHhhhhhhhhhhhhhhhhcccc-ccccccccccccccc
Q psy15562        104 SPVKISAPFGSS---RQTKYSKLNNQMDSPNRSWLSNSINQQSAMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQ  179 (318)
Q Consensus       104 ~~~~~~~~~~~~---~~~~y~kl~~~~~s~~~~~~~~~~~qq~ll~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~  179 (318)
                              .+.+   ..+++..++         +.......|++|+++||++|++|+.++|.+| |+             
T Consensus       119 --------~~~~~~~~~~~~~~~D---------~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a-------------  168 (235)
T KOG3202|consen  119 --------KSPNLDEAMSRASGLD---------NVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMA-------------  168 (235)
T ss_pred             --------CCCchhhhHHHhhccC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence                    1110   011122221         1456677899999999999999999999877 66             


Q ss_pred             CCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562        180 MDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQAL  232 (318)
Q Consensus       180 ~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~  232 (318)
                            .-++.++..|..|++++|..+|.+...+.+...-...++. ...|..
T Consensus       169 ------~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~  214 (235)
T KOG3202|consen  169 ------LAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCS  214 (235)
T ss_pred             ------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence                  6688999999999998888888887777766655555554 544443

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=96.98  E-value=0.0083  Score=57.29  Aligned_cols=104  Identities=19%  Similarity=0.251  Sum_probs=84.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCc
Q psy15562        186 SWVSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE  265 (318)
Q Consensus       186 ~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r  265 (318)
                      .-..+++..|+.++.+-|+++..|..+|-.|..+=.+||.=+.+|..+.|.+|-.++.|...+..|.+-|.+..+-...+
T Consensus       177 ~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt  256 (283)
T COG5325         177 GLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRT  256 (283)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhh
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999887644332


Q ss_pred             -ccccccchhhhcccchhhHHHHHHHHHHHHHhhhhhccccc
Q psy15562        266 -MLDEMGNEMECTESKLDATMKKVAKVLHISNVFCSYEMNLF  306 (318)
Q Consensus       266 -~c~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (318)
                       .|.                 ...+.+|-|+++|+++-+++.
T Consensus       257 ~k~~-----------------~~~Llil~vv~lfv~l~~kl~  281 (283)
T COG5325         257 KKCR-----------------FYLLLILLVVLLFVSLIKKLR  281 (283)
T ss_pred             ccch-----------------hhHHHHHHHHHHHHHHHHHhc
Confidence             331                 112345556677777766653

>KOG0809|consensus

Probab=96.05  E-value=0.052  Score=52.41  Aligned_cols=87  Identities=16%  Similarity=0.287  Sum_probs=71.2

Q ss_pred             hhhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHH
Q psy15562        185 RSWVSNSINQQSAMFDQQ--------DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA  256 (318)
Q Consensus       185 ~~fi~~elq~Qq~~m~eQ--------De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~  256 (318)
                      .+|.....++||.++.+.        ++++-.|..+|-.|.++=.+++.=+-+|.-++|.+|-.+++|.-++..|.+-+.
T Consensus       191 ~d~~~~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~  270 (305)
T KOG0809|consen  191 EDFSDRTFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELH  270 (305)
T ss_pred             hhhhhhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHH
Confidence            355555555666655555        677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHh--hcCCccccccc
Q psy15562        257 KVLH--ISNGEMLDEMG  271 (318)
Q Consensus       257 ~vl~--~s~~r~c~~~~  271 (318)
                      |.-+  +..+++|+|..
T Consensus       271 KAe~yQk~~~k~~~i~~  287 (305)
T KOG0809|consen  271 KAERYQKRNKKMKVILM  287 (305)
T ss_pred             HHHHHHhcCCceEehHH
Confidence            9855  55556655433

>KOG0810|consensus

Probab=95.80  E-value=0.078  Score=51.47  Aligned_cols=58  Identities=16%  Similarity=0.308  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562        203 DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH  260 (318)
Q Consensus       203 De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~  260 (318)
                      -..+-.|..++..|++|=.+|...++.|.+|||+++..|.++..-...+...+++-..
T Consensus       205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~  262 (297)
T KOG0810|consen  205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK  262 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999999986544

>KOG0811|consensus

Probab=94.97  E-value=0.31  Score=46.78  Aligned_cols=71  Identities=14%  Similarity=0.327  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhc
Q psy15562        192 INQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHIS  262 (318)
Q Consensus       192 lq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s  262 (318)
                      +..|..++++-.+.+..|...|.-+.+|=.+++.=+.+|.+++|.++..|++|......+++.|.+-.+-.
T Consensus       168 ~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq  238 (269)
T KOG0811|consen  168 LEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQ  238 (269)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56688999999999999999999999999999999999999999999999999999999999999987743

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=94.01  E-value=0.7  Score=34.26  Aligned_cols=63  Identities=10%  Similarity=0.132  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562        199 FDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI  261 (318)
Q Consensus       199 m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~  261 (318)
                      +.+....|+.-...+...-++|..+-.+|..|.+.|......++.+.+.|..+.+-|..+-++
T Consensus         3 l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR   65 (66)
T PF12352_consen    3 LLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR   65 (66)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence            334445778888888889999999999999999999999999999999999999888877553

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=93.67  E-value=1.8  Score=34.53  Aligned_cols=80  Identities=18%  Similarity=0.117  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCcccccccchhhhcccchhhH
Q psy15562        205 QLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEMLDEMGNEMECTESKLDAT  284 (318)
Q Consensus       205 ~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c~~~~~~~~~~~~k~~~~  284 (318)
                      .|....+.+..--+.+..--++|++|+.-|..+++..+...+.|..+.+-+.++-+.                 .+.|-+
T Consensus         9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~-----------------~~~D~~   71 (92)
T PF03908_consen    9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERR-----------------DKTDRI   71 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhHH
Confidence            344444444444445666678899999999999999999999999999999988775                 477778


Q ss_pred             HHHHHHHHHHHHhhhhh
Q psy15562        285 MKKVAKVLHISNVFCSY  301 (318)
Q Consensus       285 ~~~~~~~~~~~~~~~~~  301 (318)
                      ++..++++|+..+++.+
T Consensus        72 li~~~~~~f~~~v~yI~   88 (92)
T PF03908_consen   72 LIFFAFLFFLLVVLYIL   88 (92)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88878777777766543

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=93.22  E-value=0.51  Score=44.53  Aligned_cols=59  Identities=12%  Similarity=0.226  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562        203 DSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI  261 (318)
Q Consensus       203 De~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~  261 (318)
                      -+.|-.|..++..|-++=.+|..++-+|.++.|-++..+..++..+..+...+.+-++.
T Consensus       184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks  242 (280)
T COG5074         184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS  242 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999988888775

>KOG2678|consensus

Probab=92.79  E-value=1.2  Score=41.78  Aligned_cols=95  Identities=17%  Similarity=0.150  Sum_probs=69.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCccc
Q psy15562        188 VSNSINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGEML  267 (318)
Q Consensus       188 i~~elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r~c  267 (318)
                      .+.+++.|+-+-.   +-.+.+..-++.||.++..-++-|.+=|..|......+|.....|..+..|+.+--++..    
T Consensus       142 ~dq~l~~q~~lQe---eLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~----  214 (244)
T KOG2678|consen  142 VDQQLEDQDTLQE---ELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL----  214 (244)
T ss_pred             HHHHHHhhhHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh----
Confidence            3344444444433   445566677788999999999999999999999999999999999999999998776532    


Q ss_pred             ccccchhhhcccchhhHHHHHHHHHHHHHhhh
Q psy15562        268 DEMGNEMECTESKLDATMKKVAKVLHISNVFC  299 (318)
Q Consensus       268 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  299 (318)
                                .-++-|+|+-+..+.||+.+||
T Consensus       215 ----------s~wf~~~miI~v~~sFVsMili  236 (244)
T KOG2678|consen  215 ----------SYWFYITMIIFVILSFVSMILI  236 (244)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHH
Confidence                      1123456665555556555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	318
4dnd_A	130	Crystal Structure Of Syntaxin 10 From Homo Sapiens		2e-16
1lvf_A	110	Syntaxin 6 Length = 110		1e-13
2nps_D	82	Crystal Structure Of The Early Endosomal Snare Comp		2e-12
1gl2_D	65	Crystal Structure Of An Endosomal Snare Core Comple		4e-04

>pdb|4DND|A Chain A, Crystal Structure Of Syntaxin 10 From Homo Sapiens Length = 130

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 1  EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
          EV KA+N  R LY+RW EL +E+ A  + R+EL+WTT ELRN LRSIEWDLEDLE+TI I
Sbjct: 35 EVQKAVNTARGLYQRWCELLQESAA--VGREELDWTTNELRNGLRSIEWDLEDLEETIGI 92
Query: 61 LYNN 64
          +  N
Sbjct: 93 VEAN 96

>pdb|1LVF|A Chain A, Syntaxin 6 Length = 110

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 49/64 (76%), Gaps = 2/64 (3%)
Query: 1  EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
          EV KA+N  + L++RW EL +   A+   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct: 13 EVQKAVNTAQGLFQRWTELLQGPSAAT--REEIDWTTNELRNNLRSIEWDLEDLDETISI 70
Query: 61 LYNN 64
          +  N
Sbjct: 71 VEAN 74

>pdb|2NPS|D Chain D, Crystal Structure Of The Early Endosomal Snare Complex Length = 82

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 51/66 (77%)
Query: 198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK 257
           M   QD QL+++S +IG LK +S+ IG EL+EQA+ML++  +E+E T+S+LD  MKK+AK
Sbjct: 13  MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAK 72
Query: 258 VLHISN 263
           V H+++
Sbjct: 73  VSHMTS 78

>pdb|1GL2|D Chain D, Crystal Structure Of An Endosomal Snare Core Complex Length = 65

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 201 QQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258
           +QD+ LD LS  I   K + + IG+ELDEQ  ++D++ N +E T+ KL    ++V  V
Sbjct: 6   EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	5e-20
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	2e-13
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	2e-12
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	1e-09
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	6e-06

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82

 Score = 81.8 bits (202), Expect = 5e-20
 Identities = 34/73 (46%), Positives = 54/73 (73%)

Query: 191 SINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDA 250
           S+   + M   QD QL+++S +IG LK +S+ IG EL+EQA+ML++  +E+E T+S+LD 
Sbjct: 6   SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDN 65

Query: 251 TMKKVAKVLHISN 263
            MKK+AKV H+++
Sbjct: 66  VMKKLAKVSHMTS 78

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Length = 130

 Score = 65.4 bits (159), Expect = 2e-13
 Identities = 40/64 (62%), Positives = 48/64 (75%), Gaps = 2/64 (3%)

Query: 1  EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
          EV KA+N  R LY+RW EL +E+ A    R+EL+WTT ELRN LRSIEWDLEDLE+TI I
Sbjct: 35 EVQKAVNTARGLYQRWCELLQESAAVG--REELDWTTNELRNGLRSIEWDLEDLEETIGI 92

Query: 61 LYNN 64
          +  N
Sbjct: 93 VEAN 96

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 60.6 bits (147), Expect = 2e-12
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 200 DQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV 258
            +QD+ LD LS  I   K + + IG+ELDEQ  ++D++ N +E T+ KL    ++V  V
Sbjct: 5   QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87

 Score = 54.9 bits (132), Expect = 4e-10
 Identities = 15/63 (23%), Positives = 37/63 (58%)

Query: 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA 256
           A  ++ D  L+ +S  IG L+ ++ ++G+E+D Q   +D +  + +  ++++D   ++  
Sbjct: 22  ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 81

Query: 257 KVL 259
           K+L
Sbjct: 82  KML 84

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 6e-10
 Identities = 53/341 (15%), Positives = 99/341 (29%), Gaps = 88/341 (25%)

Query: 33  LEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYSRE--KDRGGDHM 90
           +++ T E +   + I   L   ED          F+++   KD  +  +        DH+
Sbjct: 7   MDFETGEHQYQYKDI---LSVFED---------AFVDNFDCKDVQDMPKSILSKEEIDHI 54

Query: 91  SSKPLLSDDFHSPSPV----KISAPFGSSRQTKYSKLNNQMDSPNRSWLSNSI----NQQ 142
                      S   V    ++     S ++    K   ++   N  +L + I     Q 
Sbjct: 55  ---------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 143 SAMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNN--QMDSPNR------------SW 187
           S M      Q D L           V R   Y KL        P +            +W
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 188 ----VSNSINQQSAMFDQ-----------QDSQLDMLSETIGTLKTVSRNIGSELDEQAL 232
               V  S   Q  M  +            ++ L+M       L+ +   I      ++ 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-------LQKLLYQIDPNWTSRSD 218

Query: 233 MLDEMGNEMECTESKLDATM--KKVAKVL----HISNGEMLDEMGNEMEC-----TESK- 280
               +   +   +++L   +  K     L    ++ N +  +     + C     T  K 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQ 276

Query: 281 ----LDATMKKVAKVLHISNVFCSYE-MNLFCSSEMNCKKK 316
               L A       + H S      E  +L     ++C+ +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQ 316

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 7e-08
 Identities = 53/345 (15%), Positives = 111/345 (32%), Gaps = 64/345 (18%)

Query: 1   EVSKAINKTRSLYKRWLELKEETYA---SNILRDELEWTTTELRNSLRSIEWDLEDLEDT 57
               A++ T  L+   L  +EE        +LR   ++  + ++   R          + 
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 58  INILYNNFDFIEHLCMKDTMNYSREKDRGGDHMSSKPLLSDDFHSPSP-VKISAPFGSSR 116
            + LYN+             N SR +     ++  +  L +    P+  V I    GS +
Sbjct: 116 RDRLYNDNQVF------AKYNVSRLQ----PYLKLRQALLEL--RPAKNVLIDGVLGSGK 163

Query: 117 QT------KYSKLNNQMDSPNRSWLS----NS----INQQSAMFDQQDSQLDMLSETIGT 162
                      K+  +MD     WL+    NS    +     +  Q D      S+   +
Sbjct: 164 TWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD--HS 220

Query: 163 LTVQVRRQTKYSKLNNQMDSP--NRS-------WVSNSINQQSAMFDQQ--------DSQ 205
             +++R  +  ++L   + S               + + N     F+            Q
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN----AFNLSCKILLTTRFKQ 276

Query: 206 L-DMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNG 264
           + D LS    T  ++  +  +   ++   L  +   ++C    L   +        +S  
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNP-RRLS-- 331

Query: 265 EMLDEMGNEMECT-ESKLDATMKKVAKVLHIS-NVFCSYEM-NLF 306
            ++ E   +   T ++       K+  ++  S NV    E   +F
Sbjct: 332 -IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 15/63 (23%), Positives = 37/63 (58%)

Query: 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA 256
           A  ++ D  L+ +S  IG L+ ++ ++G+E+D Q   +D +  + +  ++++D   ++  
Sbjct: 3   ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62

Query: 257 KVL 259
           K+L
Sbjct: 63  KML 65

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 87

 Score = 43.1 bits (101), Expect = 6e-06
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA 256
           A  D  ++ +  +S  IG L+ ++ ++G+E+  Q   +D +  + E  ES++D   KK  
Sbjct: 23  AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKAT 82

Query: 257 KVL 259
           K+L
Sbjct: 83  KLL 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.74
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	99.74
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.64
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	99.55
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	99.54
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	99.47
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	99.32
2c5k_T	95	Syntaxin TLG1, T-snare affecting A late golgi comp	98.44
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	97.85
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	96.93
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	96.7
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	96.23
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	96.02
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	95.96
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	95.84
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	95.59
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	95.55
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	95.13
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	94.19
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	93.08
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	88.8
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	85.95
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	84.83
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	81.93
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	80.86

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.74  E-value=2e-18  Score=134.96  Aligned_cols=75  Identities=45%  Similarity=0.698  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhhcCCc
Q psy15562        191 SINQQSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHISNGE  265 (318)
Q Consensus       191 elq~Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~s~~r  265 (318)
                      .++.|+++|++||+.||.|+.+|++||++|.+||+||++||.|||+|+++||++.++|..+++|+.+++++++++
T Consensus         6 ~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~   80 (82)
T 2nps_D            6 SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR   80 (82)
T ss_dssp             ------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            358899999999999999999999999999999999999999999999999999999999999999999998765

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=99.74  E-value=4e-19  Score=150.25  Aligned_cols=79  Identities=51%  Similarity=0.768  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccchhhh
Q psy15562          1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYS   80 (318)
Q Consensus         1 EV~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~e~~   80 (318)
                      ||+++|++++++|.+|..+...++  +++++|+.|+++||+++|++|+|||+||++||.|||+||++|+|    +..++.
T Consensus        35 EVq~sl~~l~~l~~~w~~l~~~~~--~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l----~~~Ei~  108 (130)
T 4dnd_A           35 EVQKAVNTARGLYQRWCELLQESA--AVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKL----PAGDLQ  108 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC----CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCC----CHHHHH
Confidence            699999999999999999988775  45789999999999999999999999999999999999998887    555566


Q ss_pred             hhhcc
Q psy15562         81 REKDR   85 (318)
Q Consensus        81 ~~~~~   85 (318)
                      +||+|
T Consensus       109 ~Rr~f  113 (130)
T 4dnd_A          109 ERKVF  113 (130)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66555

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.64  E-value=2.4e-16  Score=117.81  Aligned_cols=64  Identities=36%  Similarity=0.534  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562        197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH  260 (318)
Q Consensus       197 ~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~  260 (318)
                      ++|++||+.||.|+.+|++||++|.+||+||++||.|||+|++.||++..+|..+++|+.+|++
T Consensus         2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k   65 (65)
T 1gl2_D            2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR   65 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            5899999999999999999999999999999999999999999999999999999999998864

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=99.55  E-value=1e-14  Score=109.25  Aligned_cols=63  Identities=22%  Similarity=0.460  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562        198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH  260 (318)
Q Consensus       198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~  260 (318)
                      +-.+||+.|+.|+++|++||++|..||.||+.||.|||+|++.||++..+|..+++|+.++++
T Consensus         4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll~   66 (66)
T 1n7s_D            4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcC
Confidence            557999999999999999999999999999999999999999999999999999999999864

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.54  E-value=1.5e-14  Score=114.25  Aligned_cols=67  Identities=22%  Similarity=0.442  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562        195 QSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI  261 (318)
Q Consensus       195 Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~  261 (318)
                      +..+.++||+.|+.|+.+|++||++|.+||.||+.||.|||+|++.||++..+|..+++|+.+|+++
T Consensus        20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k   86 (87)
T 1sfc_D           20 NDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS   86 (87)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            3567889999999999999999999999999999999999999999999999999999999999876

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.47  E-value=7.2e-14  Score=110.41  Aligned_cols=65  Identities=28%  Similarity=0.459  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562        197 AMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI  261 (318)
Q Consensus       197 ~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~  261 (318)
                      .+..+||+.|+.|+..|++||+||.+||.||+.||.+||+|++.||++..+|..+++|+.+++++
T Consensus        23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k   87 (87)
T 1l4a_D           23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN   87 (87)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35678999999999999999999999999999999999999999999999999999999998874

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=5e-12  Score=94.50  Aligned_cols=60  Identities=23%  Similarity=0.319  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562        198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK  257 (318)
Q Consensus       198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~  257 (318)
                      +=++||+.|+.|++.|++||.||.+||.||+.||.+||++...+|++..++..+++||.+
T Consensus         4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D            4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            457899999999999999999999999999999999999999999999999999999986

>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T

Probab=98.44  E-value=7.7e-08  Score=77.00  Aligned_cols=67  Identities=13%  Similarity=0.222  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccchhhh
Q psy15562          1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYS   80 (318)
Q Consensus         1 EV~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~e~~   80 (318)
                      ||+.+|+.+++++.+       .+  ++++   .|+++||++.|.+|+|||+||++||.|+|+|    ...|+.+|+.++
T Consensus        14 D~~~ql~~l~~~~~~-------~~--~~~~---~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----~~~EI~~Rk~~v   77 (95)
T 2c5k_T           14 DTKEQLNRINNYITR-------HN--TAGD---DDQEEEIQDILKDVEETIVDLDRSIIVMKRD----ENEDVSGREAQV   77 (95)
T ss_dssp             HHHHHHHHHHHHHHH-------TC--CC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-------cc--CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Confidence            467888888887654       11  1123   3999999999999999999999999999999    444555555555


Q ss_pred             hhh
Q psy15562         81 REK   83 (318)
Q Consensus        81 ~~~   83 (318)
                      ...
T Consensus        78 ~~l   80 (95)
T 2c5k_T           78 KNI   80 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=97.85  E-value=0.0003  Score=57.12  Aligned_cols=66  Identities=14%  Similarity=0.242  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562        195 QSAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH  260 (318)
Q Consensus       195 Qq~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~  260 (318)
                      .-..+++.++++..|..++..|+++-.+|+..+.+|.+|||.++..++.+...+..+.+.+.+..+
T Consensus        12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~   77 (109)
T 3hd7_B           12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK   77 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999999999999999999999999999999999999999999998844

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=96.93  E-value=0.0073  Score=45.78  Aligned_cols=63  Identities=14%  Similarity=0.260  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562        198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH  260 (318)
Q Consensus       198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~  260 (318)
                      .+.+-.+++..|..+|..|++|=.+|..=+.+|..|||.++..|+.|...+..+...+.+-.+
T Consensus         4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~   66 (77)
T 1jth_B            4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK   66 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466778889999999999999999999999999999999999999999999999999999877

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=96.70  E-value=0.0026  Score=48.99  Aligned_cols=56  Identities=21%  Similarity=0.396  Sum_probs=41.7

Q ss_pred             hHHHHhhhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562        140 NQQSAMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIG  214 (318)
Q Consensus       140 ~qq~ll~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~  214 (318)
                      .+|..++.+||++|+.++.+|+.+| ++                   .-|+.|+..|..+|++.+..+|.....+.
T Consensus         8 q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a-------------------~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~   64 (82)
T 2nps_D            8 TGGNNMGRMQDEQLELVSGSIGVLKNMS-------------------QRIGGELEEQAVMLEDFSHELESTQSRLD   64 (82)
T ss_dssp             ----------CCTHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788999999999999999888 65                   56999999999999999999999887776

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=96.23  E-value=0.0064  Score=44.56  Aligned_cols=53  Identities=23%  Similarity=0.368  Sum_probs=42.0

Q ss_pred             Hhhhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562        144 AMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGT  215 (318)
Q Consensus       144 ll~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~  215 (318)
                      .++.+||++|+.++++++.+| ++                   .-|+.|++.|..++++.+..+|.....+.+
T Consensus         2 ~~~~eqD~~Ld~L~~~v~~lk~~a-------------------~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~   55 (65)
T 1gl2_D            2 SHMQEQDAGLDALSSIISRQKQMG-------------------QEIGNELDEQNEIIDDLANLVENTDEKLRT   55 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999888 65                   569999999999999999999998887764

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=96.02  E-value=0.046  Score=40.68  Aligned_cols=60  Identities=10%  Similarity=0.296  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562        202 QDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI  261 (318)
Q Consensus       202 QDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~  261 (318)
                      -.+.+..|..+|..|++|=.+|..=+.+|..|||.++..|+.|...+..+...|.+-.+.
T Consensus         4 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~   63 (71)
T 2nps_B            4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY   63 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788999999999999999999999999999999999999999999999999887663

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=95.96  E-value=0.072  Score=39.46  Aligned_cols=63  Identities=13%  Similarity=0.193  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHh
Q psy15562        198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLH  260 (318)
Q Consensus       198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~  260 (318)
                      .+.+-.+.+..|..+|..|++|=.+|..=+.+|..|||.++..|+.|...+..+.+.+.+-.+
T Consensus         4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~   66 (69)
T 3b5n_B            4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK   66 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466778899999999999999999999999999999999999999999999999999987654

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=95.84  E-value=0.043  Score=40.23  Aligned_cols=60  Identities=15%  Similarity=0.369  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHH
Q psy15562        198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAK  257 (318)
Q Consensus       198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~  257 (318)
                      ++.+-.+.+..|..+|..|++|=.+|..=+.+|..|||.++..|+.|...+..+.+.|.+
T Consensus         3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k   62 (65)
T 1gl2_B            3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR   62 (65)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566788999999999999999999999999999999999999999999999998875

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=95.59  E-value=0.13  Score=39.48  Aligned_cols=66  Identities=14%  Similarity=0.240  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHHhh
Q psy15562        196 SAMFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVLHI  261 (318)
Q Consensus       196 q~~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl~~  261 (318)
                      ...+.+-.+.+..|..+|..|++|=.+|..=+.+|..|||.++..|+.+...+..+.+.+.+-.+.
T Consensus        13 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~   78 (83)
T 1sfc_B           13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   78 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888999999999999999999999999999999999999999999999999999887653

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=95.55  E-value=0.1  Score=38.44  Aligned_cols=61  Identities=15%  Similarity=0.255  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHH
Q psy15562        198 MFDQQDSQLDMLSETIGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV  258 (318)
Q Consensus       198 ~m~eQDe~Ld~Ls~sV~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~v  258 (318)
                      .+.+-.+.+..|..+|..|+++=.+|..=+.+|..|||.++..|+.|...+..+.+.+.+-
T Consensus         6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA   66 (68)
T 1n7s_B            6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788899999999999999999999999999999999999999999999999988764

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=95.13  E-value=0.03  Score=43.47  Aligned_cols=56  Identities=23%  Similarity=0.262  Sum_probs=47.8

Q ss_pred             HHHhhhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562        142 QSAMFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTL  216 (318)
Q Consensus       142 q~ll~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~L  216 (318)
                      +..+..+||..|+.++..++.+| ++                   .-++.|++.|..+|++.+...|.+...|...
T Consensus        20 ~d~~e~eqD~~Ld~Ls~~v~rLk~la-------------------~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~   76 (87)
T 1sfc_D           20 NDARENEMDENLEQVSGIIGNLRHMA-------------------LDMGNEIDTQNRQIDRIMEKADSNKTRIDEA   76 (87)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45567889999999999999887 55                   5689999999999999999999988877643

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=94.19  E-value=0.1  Score=38.18  Aligned_cols=52  Identities=23%  Similarity=0.270  Sum_probs=44.8

Q ss_pred             hhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562        146 FDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGTL  216 (318)
Q Consensus       146 ~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~L  216 (318)
                      -.+||.+|+.++++++.+| ++                   .-++.|+..|..++++.+..+|.....|...
T Consensus         5 e~eqD~~Ld~L~~~v~~lk~la-------------------~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~   57 (66)
T 1n7s_D            5 ENEMDENLEQVSGIIGNLRHMA-------------------LDMGNEIDTQNRQIDRIMEKADSNKTRIDEA   57 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3578999999999999888 65                   5689999999999999999999988887743

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=93.08  E-value=1.4  Score=33.52  Aligned_cols=67  Identities=18%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHHH
Q psy15562        193 NQQSAMFDQQDSQLDMLSETIG---TLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKVL  259 (318)
Q Consensus       193 q~Qq~~m~eQDe~Ld~Ls~sV~---~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~vl  259 (318)
                      ..++.....+++.++.+..++.   .-.++|..+-.+|..|.+-|+..+..+|....-|+.+.|.|..+-
T Consensus         9 ~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C            9 EMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            5567777888888888888877   456689999999999999999999999999999999998887653

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=88.80  E-value=0.52  Score=36.51  Aligned_cols=52  Identities=19%  Similarity=0.248  Sum_probs=44.1

Q ss_pred             hhhhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562        145 MFDQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIGT  215 (318)
Q Consensus       145 l~~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~~  215 (318)
                      +-.+||..|+.++..++.+| ++                   .-++.|++.|..+|+..+...|.+...|..
T Consensus        24 ~e~eqD~~Ld~ls~~l~rLk~mA-------------------~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~   76 (87)
T 1l4a_D           24 REDDMENNMKEVSSMIGNLRNMA-------------------IDMGNEIGSQNRQVDRIQQKAESNESRIDE   76 (87)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHTHHHHTH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999887 55                   558899999999999999999988887763

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=85.95  E-value=1.8  Score=33.42  Aligned_cols=64  Identities=16%  Similarity=0.173  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHH
Q psy15562        193 NQQSAMFDQQDSQLDMLSETIGTLK---TVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA  256 (318)
Q Consensus       193 q~Qq~~m~eQDe~Ld~Ls~sV~~Lk---~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~  256 (318)
                      ..++.+..-+++.++.....++-..   ..|..--.+|..|.+-|+.++..+|....-|+.+-+.|.
T Consensus        13 ~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~   79 (83)
T 1l4a_C           13 EIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLE   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566777788899999888887544   477788889999999999999999999998888877665

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=84.83  E-value=7.4  Score=28.88  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHHHH
Q psy15562        198 MFDQQDSQLDMLSETIGTLKT---VSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVAKV  258 (318)
Q Consensus       198 ~m~eQDe~Ld~Ls~sV~~Lk~---~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~~v  258 (318)
                      +..-+++.++.....+.-..+   .|..-=.+|..|.+-|+.++..+|....-++.+-+++..+
T Consensus         3 ir~~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L   66 (70)
T 3b5n_C            3 IKFTKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL   66 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344456677777777765444   6777778999999999999999999999999999999865

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=81.93  E-value=5.4  Score=27.92  Aligned_cols=44  Identities=16%  Similarity=0.148  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHhhhhhhhHHHHHHH
Q psy15562        213 IGTLKTVSRNIGSELDEQALMLDEMGNEMECTESKLDATMKKVA  256 (318)
Q Consensus       213 V~~Lk~~a~~Ig~EL~eQn~mLDdL~~~vD~t~~rL~~~~kkl~  256 (318)
                      +....++|..+-.+|..|.+-|+..+..+|....-|+.+.|.|.
T Consensus         9 ~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~   52 (54)
T 1nhl_A            9 AIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence            33456778888899999999999999999999999999988775

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=80.86  E-value=2.7  Score=30.69  Aligned_cols=49  Identities=14%  Similarity=0.201  Sum_probs=39.8

Q ss_pred             hhhhhhhhhhhhhhcccc-cccccccccccccccCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15562        147 DQQDSQLDMLSETIGTLT-VQVRRQTKYSKLNNQMDSPNRSWVSNSINQQSAMFDQQDSQLDMLSETIG  214 (318)
Q Consensus       147 ~~qd~ql~~v~~sig~~k-~s~~~~~~y~~l~~~~~~~n~~fi~~elq~Qq~~m~eQDe~Ld~Ls~sV~  214 (318)
                      +++|+.|+.+++.+|.+| |.                   .-++.+++.|..+++.-++..|.+...|.
T Consensus         6 ~e~D~nLd~l~~~~~rlk~ma-------------------~~mg~Eid~QN~~ldrI~~k~d~~d~ri~   55 (64)
T 3b5n_D            6 LEIDRNLDQIQQVSNRLKKMA-------------------LTTGKELDSQQKRLNNIEESTDDLDINLH   55 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHH-------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999998887 55                   45788889998888888888888777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d1lvfa_	106	a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Ra	1e-14

>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 106

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 35/64 (54%), Positives = 49/64 (76%), Gaps = 2/64 (3%)

Query: 1  EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINI 60
          EV KA+N  + L++RW EL +   A+   R+E++WTT ELRN+LRSIEWDLEDL++TI+I
Sbjct: 10 EVQKAVNTAQGLFQRWTELLQGPSAAT--REEIDWTTNELRNNLRSIEWDLEDLDETISI 67

Query: 61 LYNN 64
          +  N
Sbjct: 68 VEAN 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1lvfa_	106	Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu	99.76

>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.6e-19  Score=145.55  Aligned_cols=79  Identities=47%  Similarity=0.747  Sum_probs=71.1

Q ss_pred             CHHHHHHHHHHHHHHHHHhhhhcccCccchhhHHHHHHHHHHHHHhHHhcHHHHHHHHHHHHhCCceeeecccccchhhh
Q psy15562          1 EVSKAINKTRSLYKRWLELKEETYASNILRDELEWTTTELRNSLRSIEWDLEDLEDTINILYNNFDFIEHLCMKDTMNYS   80 (318)
Q Consensus         1 EV~~sl~~~~~ly~Rw~~L~~~~~~~~~s~~El~~~~~EL~~~l~siE~DLeDL~esI~ivE~nP~f~~i~e~k~~~e~~   80 (318)
                      ||+++|++++++|.+|..+...++  +++++|+.|+++||+++|++|+|||+||++||.+||+||++|++    +..++.
T Consensus        10 EVq~s~~~~~~l~~~w~~~~~~~~--~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l----~~~ei~   83 (106)
T d1lvfa_          10 EVQKAVNTAQGLFQRWTELLQGPS--AATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNL----DATELS   83 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTT--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTC----CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCC--CCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCC----CHHHHH
Confidence            799999999999999999998764  56789999999999999999999999999999999999998887    556666


Q ss_pred             hhhcc
Q psy15562         81 REKDR   85 (318)
Q Consensus        81 ~~~~~   85 (318)
                      +||+|
T Consensus        84 ~Rr~f   88 (106)
T d1lvfa_          84 IRKAF   88 (106)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66655