Psyllid ID: psy15602

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQHDQGTSDDT
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIElnlsppagkyAMRDLVqklpsgnaqhdqgtsddt
Flexible Loop (DISEMBL)
MEVDRVVCAAATalrnlaidqrNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLpsgnaqhdqgtsddt
Low Complexity Region (SEG)
MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQHDQGTSDDT
Disordered region (IsUnstruct)
****RVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYA***********************
Disordered Region (DISOPRED)
***DRVVCAAATALRNLAIDQRNKELIDAFEANLI***********KYAMRD********************
Disordered Region (DISEMBL)
MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLP**************
Disordered Region (DISPRO)
**VDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLP**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQHDQGTSDDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q9UQB3	1225	Catenin delta-2 OS=Homo s	yes	N/A	0.708	0.041	0.513	5e-10
Q68FH0	1190	Plakophilin-4 OS=Mus musc	yes	N/A	0.611	0.036	0.516	3e-08
Q99569	1192	Plakophilin-4 OS=Homo sap	no	N/A	0.611	0.036	0.516	3e-08
O35927	1247	Catenin delta-2 OS=Mus mu	no	N/A	0.708	0.040	0.5	4e-08
Q9U308	1254	Juxtamembrane domain-asso	no	N/A	0.708	0.040	0.463	3e-07
P30999	938	Catenin delta-1 OS=Mus mu	no	N/A	0.736	0.056	0.422	1e-05
O60716	968	Catenin delta-1 OS=Homo s	no	N/A	0.736	0.054	0.422	1e-05

>sp|Q9UQB3|CTND2_HUMAN Catenin delta-2 OS=Homo sapiens GN=CTNND2 PE=1 SV=3

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 43/72 (59%), Gaps = 21/72 (29%)

Query: 4   DRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQ 63
           DRVVCA ATALRN+A+D RNKELI                  GKYAMRDLV +LP GN  
Sbjct: 906 DRVVCAVATALRNMALDVRNKELI------------------GKYAMRDLVHRLPGGNNS 947

Query: 64  HDQGT---SDDT 72
           ++  +   SDDT
Sbjct: 948 NNTASKAMSDDT 959

Functions as a transcriptional activator when bound to ZBTB33 (By similarity). May be involved in neuronal cell adhesion and tissue morphogenesis and integrity by regulating adhesion molecules.
Homo sapiens (taxid: 9606)

>sp|Q68FH0|PKP4_MOUSE Plakophilin-4 OS=Mus musculus GN=Pkp4 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 18/62 (29%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           M+ DRVV + ATALRN+A+D RNKELI                  GKYAMRDLV +LP G
Sbjct: 882 MDNDRVVSSVATALRNMALDVRNKELI------------------GKYAMRDLVNRLPGG 923

Query: 61  NA 62
           N 
Sbjct: 924 NG 925

Plays a role as a regulator of Rho activity during cytokinesis. May play a role in junctional plaques.

Mus musculus (taxid: 10090)

>sp|Q99569|PKP4_HUMAN Plakophilin-4 OS=Homo sapiens GN=PKP4 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 18/62 (29%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           M+ DRVV + ATALRN+A+D RNKELI                  GKYAMRDLV +LP G
Sbjct: 883 MDNDRVVSSVATALRNMALDVRNKELI------------------GKYAMRDLVNRLPGG 924

Query: 61  NA 62
           N 
Sbjct: 925 NG 926

Plays a role as a regulator of Rho activity during cytokinesis. May play a role in junctional plaques.

Homo sapiens (taxid: 9606)

>sp|O35927|CTND2_MOUSE Catenin delta-2 OS=Mus musculus GN=Ctnnd2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 41/72 (56%), Gaps = 21/72 (29%)

Query: 4   DRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLP---SG 60
           DRVVCA ATALRN+A+D RNKELI                  GKYAMRDLV +LP   + 
Sbjct: 928 DRVVCAVATALRNMALDVRNKELI------------------GKYAMRDLVHRLPGGNNS 969

Query: 61  NAQHDQGTSDDT 72
           N    +  SDDT
Sbjct: 970 NNSGSKAMSDDT 981

May be involved in neuronal cell adhesion and tissue morphogenesis and integrity by regulating adhesion molecules. Functions as a transcriptional activator when bound to ZBTB33.

Mus musculus (taxid: 10090)

>sp|Q9U308|JAC1_CAEEL Juxtamembrane domain-associated catenin OS=Caenorhabditis elegans GN=jac-1 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 36/69 (52%), Gaps = 18/69 (26%)

Query: 4    DRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQ 63
            D VVCA ATALRNLAID RN+ELI                  GKYA+RD + KLP   + 
Sbjct: 1030 DFVVCAVATALRNLAIDPRNRELI------------------GKYALRDFLDKLPEPGSP 1071

Query: 64   HDQGTSDDT 72
                 SD T
Sbjct: 1072 RRSAISDQT 1080

May act as a positive modulator of hmr-1 function during epidermal morphogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|P30999|CTND1_MOUSE Catenin delta-1 OS=Mus musculus GN=Ctnnd1 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 18/71 (25%)

Query: 2   EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGN 61
           E +RVV AA+ ALRNLA+D RNKELI                  GK+A+ +LV+ LP G 
Sbjct: 722 EHERVVKAASGALRNLAVDARNKELI------------------GKHAIPNLVKNLPGGQ 763

Query: 62  AQHDQGTSDDT 72
                  S+DT
Sbjct: 764 QNSSWNFSEDT 774

May associate with and regulate the cell adhesion properties of both C- and E-cadherins. Implicated both in cell transformation by SRC and in ligand-induced receptor signaling through the EGF, PDGF, CSF-1 and ERBB2 receptors (By similarity). Binds to and inhibits the transcriptional repressor ZBTB33, which may lead to activation of target genes of the Wnt signaling pathway. Promotes GLIS2 C-terminal cleavage.

Mus musculus (taxid: 10090)

>sp|O60716|CTND1_HUMAN Catenin delta-1 OS=Homo sapiens GN=CTNND1 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 18/71 (25%)

Query: 2   EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGN 61
           E +RVV AA+ ALRNLA+D RNKELI                  GK+A+ +LV+ LP G 
Sbjct: 722 EHERVVKAASGALRNLAVDARNKELI------------------GKHAIPNLVKNLPGGQ 763

Query: 62  AQHDQGTSDDT 72
                  S+DT
Sbjct: 764 QNSSWNFSEDT 774

Binds to and inhibits the transcriptional repressor ZBTB33, which may lead to activation of target genes of the Wnt signaling pathway (By similarity). May associate with and regulate the cell adhesion properties of both C- and E-cadherins. Implicated both in cell transformation by SRC and in ligand-induced receptor signaling through the EGF, PDGF, CSF-1 and ERBB2 receptors. Promotes GLIS2 C-terminal cleavage.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
328710154	896	PREDICTED: catenin delta-2-like isoform	0.75	0.060	0.736	7e-20
328710156	917	PREDICTED: catenin delta-2-like isoform	0.75	0.058	0.736	7e-20
189241994	626	PREDICTED: similar to plakophilin-4 [Tri	0.75	0.086	0.722	3e-19
332030397	398	Catenin delta-2 [Acromyrmex echinatior]	0.75	0.135	0.708	4e-19
195122648	774	GI18868 [Drosophila mojavensis] gi|19391	0.75	0.069	0.722	4e-19
195028450	790	GH21722 [Drosophila grimshawi] gi|193903	0.75	0.068	0.722	4e-19
322797317	913	hypothetical protein SINV_07811 [Solenop	0.75	0.059	0.708	5e-19
307178288	904	Catenin delta-2 [Camponotus floridanus]	0.75	0.059	0.708	5e-19
195430914	771	GK21376 [Drosophila willistoni] gi|19415	0.75	0.070	0.722	5e-19
383860564	890	PREDICTED: catenin delta-2-like [Megachi	0.75	0.060	0.708	5e-19

>gi|328710154|ref|XP_003244181.1| PREDICTED: catenin delta-2-like isoform 2 [Acyrthosiphon pisum]

 Score =  100 bits (250), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 53/72 (73%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDLVQKLPSG
Sbjct: 613 MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLVQKLPSG 654

Query: 61  NAQHDQGTSDDT 72
           NAQHDQGTSDDT
Sbjct: 655 NAQHDQGTSDDT 666

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710156|ref|XP_001943784.2| PREDICTED: catenin delta-2-like isoform 1 [Acyrthosiphon pisum]

 Score =  100 bits (250), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 53/72 (73%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDLVQKLPSG
Sbjct: 634 MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLVQKLPSG 675

Query: 61  NAQHDQGTSDDT 72
           NAQHDQGTSDDT
Sbjct: 676 NAQHDQGTSDDT 687

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241994|ref|XP_968711.2| PREDICTED: similar to plakophilin-4 [Tribolium castaneum]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 52/72 (72%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDLVQKLPSG
Sbjct: 366 MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLVQKLPSG 407

Query: 61  NAQHDQGTSDDT 72
           N QHDQGTSDDT
Sbjct: 408 NPQHDQGTSDDT 419

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030397|gb|EGI70104.1| Catenin delta-2 [Acromyrmex echinatior]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 52/72 (72%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDL+QKLPSG
Sbjct: 66  MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLIQKLPSG 107

Query: 61  NAQHDQGTSDDT 72
           N QHDQGTSDDT
Sbjct: 108 NNQHDQGTSDDT 119

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195122648|ref|XP_002005823.1| GI18868 [Drosophila mojavensis] gi|193910891|gb|EDW09758.1| GI18868 [Drosophila mojavensis]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 52/72 (72%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDLVQKLPSG
Sbjct: 571 MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLVQKLPSG 612

Query: 61  NAQHDQGTSDDT 72
           NAQHDQ TSDDT
Sbjct: 613 NAQHDQNTSDDT 624

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028450|ref|XP_001987089.1| GH21722 [Drosophila grimshawi] gi|193903089|gb|EDW01956.1| GH21722 [Drosophila grimshawi]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 52/72 (72%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDLVQKLPSG
Sbjct: 575 MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLVQKLPSG 616

Query: 61  NAQHDQGTSDDT 72
           NAQHDQ TSDDT
Sbjct: 617 NAQHDQNTSDDT 628

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797317|gb|EFZ19435.1| hypothetical protein SINV_07811 [Solenopsis invicta]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 52/72 (72%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDL+QKLPSG
Sbjct: 620 MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLIQKLPSG 661

Query: 61  NAQHDQGTSDDT 72
           N QHDQGTSDDT
Sbjct: 662 NNQHDQGTSDDT 673

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178288|gb|EFN67060.1| Catenin delta-2 [Camponotus floridanus]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 52/72 (72%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDL+QKLPSG
Sbjct: 624 MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLIQKLPSG 665

Query: 61  NAQHDQGTSDDT 72
           N QHDQGTSDDT
Sbjct: 666 NNQHDQGTSDDT 677

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430914|ref|XP_002063493.1| GK21376 [Drosophila willistoni] gi|194159578|gb|EDW74479.1| GK21376 [Drosophila willistoni]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/72 (72%), Positives = 52/72 (72%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDLVQKLPSG
Sbjct: 569 MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLVQKLPSG 610

Query: 61  NAQHDQGTSDDT 72
           NAQHDQ TSDDT
Sbjct: 611 NAQHDQNTSDDT 622

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860564|ref|XP_003705759.1| PREDICTED: catenin delta-2-like [Megachile rotundata]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/72 (70%), Positives = 52/72 (72%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
           MEVDRVVCA ATALRNLAIDQRNKELI                  GKYAMRDL+QKLPSG
Sbjct: 625 MEVDRVVCAVATALRNLAIDQRNKELI------------------GKYAMRDLIQKLPSG 666

Query: 61  NAQHDQGTSDDT 72
           N QHDQGTSDDT
Sbjct: 667 NNQHDQGTSDDT 678

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
FB|FBgn0260799	781	p120ctn "Adherens junction pro	0.375	0.034	0.925	2e-18
UNIPROTKB|D6R9A8	792	CTNND2 "Catenin delta-2" [Homo	0.375	0.034	0.740	3.6e-10
UNIPROTKB|E7EPC8	1134	CTNND2 "Catenin delta-2" [Homo	0.375	0.023	0.740	8.3e-10
UNIPROTKB|Q9UQB3	1225	CTNND2 "Catenin delta-2" [Homo	0.375	0.022	0.740	9.8e-10
UNIPROTKB|Q99569	1192	PKP4 "Plakophilin-4" [Homo sap	0.416	0.025	0.633	4.2e-08
UNIPROTKB|F7GD17	1192	PKP4 "Uncharacterized protein"	0.416	0.025	0.633	4.2e-08
UNIPROTKB|G3QH40	1192	PKP4 "Uncharacterized protein"	0.416	0.025	0.633	4.2e-08
UNIPROTKB|H2QIV2	1192	ENSG00000144283 "Plakophilin 4	0.416	0.025	0.633	4.2e-08
UNIPROTKB|I0FVU6	1192	PKP4 "Plakophilin-4 isoform a"	0.416	0.025	0.633	4.2e-08
UNIPROTKB|G1QJN2	1210	PKP4 "Uncharacterized protein"	0.416	0.024	0.633	4.3e-08

FB|FBgn0260799 p120ctn "Adherens junction protein p120" [Drosophila melanogaster (taxid:7227)]

 Score = 133 (51.9 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query:    46 GKYAMRDLVQKLPSGNAQHDQGTSDDT 72
             GKYAMRDLVQKLPSGN QHDQ TSDDT
Sbjct:   607 GKYAMRDLVQKLPSGNVQHDQNTSDDT 633

GO:0005912 "adherens junction" evidence=ISS;IDA;IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0007155 "cell adhesion" evidence=IGI

GO:0001745 "compound eye morphogenesis" evidence=IGI;IMP

GO:0034334 "adherens junction maintenance" evidence=IMP

UNIPROTKB|D6R9A8 CTNND2 "Catenin delta-2" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
 Identities = 20/27 (74%), Positives = 23/27 (85%)

Query:     4 DRVVCAAATALRNLAIDQRNKELIDAF 30
             DRVVCA ATALRN+A+D RNKELI  +
Sbjct:   473 DRVVCAVATALRNMALDVRNKELIGKY 499

GO:0001763 "morphogenesis of a branching structure" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0048167 "regulation of synaptic plasticity" evidence=IEA

UNIPROTKB|E7EPC8 CTNND2 "Catenin delta-2" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
 Identities = 20/27 (74%), Positives = 23/27 (85%)

Query:     4 DRVVCAAATALRNLAIDQRNKELIDAF 30
             DRVVCA ATALRN+A+D RNKELI  +
Sbjct:   815 DRVVCAVATALRNMALDVRNKELIGKY 841

GO:0001763 "morphogenesis of a branching structure" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0048167 "regulation of synaptic plasticity" evidence=IEA

UNIPROTKB|Q9UQB3 CTNND2 "Catenin delta-2" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
 Identities = 20/27 (74%), Positives = 23/27 (85%)

Query:     4 DRVVCAAATALRNLAIDQRNKELIDAF 30
             DRVVCA ATALRN+A+D RNKELI  +
Sbjct:   906 DRVVCAVATALRNMALDVRNKELIGKY 932

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0001763 "morphogenesis of a branching structure" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0048167 "regulation of synaptic plasticity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005912 "adherens junction" evidence=IEA

GO:0043204 "perikaryon" evidence=IEA

GO:0007158 "neuron cell-cell adhesion" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

UNIPROTKB|Q99569 PKP4 "Plakophilin-4" [Homo sapiens (taxid:9606)]

 Score = 93 (37.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query:     1 MEVDRVVCAAATALRNLAIDQRNKELIDAF 30
             M+ DRVV + ATALRN+A+D RNKELI  +
Sbjct:   883 MDNDRVVSSVATALRNMALDVRNKELIGKY 912

GO:0007155 "cell adhesion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000922 "spindle pole" evidence=IDA

GO:0051233 "spindle midzone" evidence=IDA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0009898 "internal side of plasma membrane" evidence=IDA

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=IMP

GO:0032321 "positive regulation of Rho GTPase activity" evidence=IDA

GO:0044291 "cell-cell contact zone" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030057 "desmosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

UNIPROTKB|F7GD17 PKP4 "Uncharacterized protein" [Callithrix jacchus (taxid:9483)]

 Score = 93 (37.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query:     1 MEVDRVVCAAATALRNLAIDQRNKELIDAF 30
             M+ DRVV + ATALRN+A+D RNKELI  +
Sbjct:   883 MDNDRVVSSVATALRNMALDVRNKELIGKY 912

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

UNIPROTKB|G3QH40 PKP4 "Uncharacterized protein" [Gorilla gorilla gorilla (taxid:9595)]

 Score = 93 (37.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query:     1 MEVDRVVCAAATALRNLAIDQRNKELIDAF 30
             M+ DRVV + ATALRN+A+D RNKELI  +
Sbjct:   883 MDNDRVVSSVATALRNMALDVRNKELIGKY 912

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

UNIPROTKB|H2QIV2 ENSG00000144283 "Plakophilin 4" [Pan troglodytes (taxid:9598)]

 Score = 93 (37.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query:     1 MEVDRVVCAAATALRNLAIDQRNKELIDAF 30
             M+ DRVV + ATALRN+A+D RNKELI  +
Sbjct:   883 MDNDRVVSSVATALRNMALDVRNKELIGKY 912

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

UNIPROTKB|I0FVU6 PKP4 "Plakophilin-4 isoform a" [Macaca mulatta (taxid:9544)]

 Score = 93 (37.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query:     1 MEVDRVVCAAATALRNLAIDQRNKELIDAF 30
             M+ DRVV + ATALRN+A+D RNKELI  +
Sbjct:   883 MDNDRVVSSVATALRNMALDVRNKELIGKY 912

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

UNIPROTKB|G1QJN2 PKP4 "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)]

 Score = 93 (37.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query:     1 MEVDRVVCAAATALRNLAIDQRNKELIDAF 30
             M+ DRVV + ATALRN+A+D RNKELI  +
Sbjct:   883 MDNDRVVSSVATALRNMALDVRNKELIGKY 912

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005911 "cell-cell junction" evidence=ISS

GO:0007043 "cell-cell junction assembly" evidence=ISS

GO:0009898 "internal side of plasma membrane" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0030057 "desmosome" evidence=ISS

GO:0032321 "positive regulation of Rho GTPase activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051233 "spindle midzone" evidence=ISS

GO:0071777 "positive regulation of cell cycle cytokinesis" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0044291 "cell-cell contact zone" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UQB3	CTND2_HUMAN	No assigned EC number	0.5138	0.7083	0.0416	yes	N/A
Q68FH0	PKP4_MOUSE	No assigned EC number	0.5161	0.6111	0.0369	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG1048|consensus	717		99.48
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	89.67
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	85.09

>KOG1048|consensus

Probab=99.48  E-value=1.5e-14  Score=120.57  Aligned_cols=52  Identities=54%  Similarity=0.693  Sum_probs=48.6

Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhCCCCchhhhHHHHhhhCCCCCCCCCCCCCCCC
Q psy15602          1 MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQHDQGTSDDT   72 (72)
Q Consensus         1 m~~drVv~a~ataLRNLAlD~RNKeLI~~~~~~~~~~~~~~~~~~GkyAmrdLV~kLP~~~~~~~~~lsddT   72 (72)
                      +++|+|||+++++||||++|.|||++|                  |||||+|||.+||++++  .+.+||||
T Consensus       577 ~~~~~vv~s~a~~LrNls~d~rnk~li------------------gk~a~~~lv~~Lp~~~~--~~~~sedt  628 (717)
T KOG1048|consen  577 NDDSDVVRSAAGALRNLSRDIRNKELI------------------GKYAIPDLVRCLPGSGP--STSLSEDT  628 (717)
T ss_pred             cCCchHHHHHHHHHhhhccCchhhhhh------------------hcchHHHHHHhCcCCCC--CcCchHHH
Confidence            478999999999999999999999999                  99999999999999888  46888886

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=89.67  E-value=0.38  Score=24.19  Aligned_cols=17  Identities=53%  Similarity=0.476  Sum_probs=15.1

Q ss_pred             CchHHHHHHHHHHHhhh
Q psy15602          2 EVDRVVCAAATALRNLA   18 (72)
Q Consensus         2 ~~drVv~a~ataLRNLA   18 (72)
                      +++++++.++.+||||+
T Consensus        24 ~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       24 EDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CCHHHHHHHHHHHHHHc
Confidence            46789999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=85.09  E-value=1.1  Score=23.65  Aligned_cols=17  Identities=47%  Similarity=0.239  Sum_probs=14.9

Q ss_pred             CchHHHHHHHHHHHhhh
Q psy15602          2 EVDRVVCAAATALRNLA   18 (72)
Q Consensus         2 ~~drVv~a~ataLRNLA   18 (72)
                      +++.|.+.++.||+||+
T Consensus        24 ~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   24 PDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            46788999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
3l6x_A	584	Crystal Structure Of P120 Catenin In Complex With E		9e-07

>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With E-Cadherin Length = 584

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 18/71 (25%)
Query: 2   EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGN 61
           E +RVV AA+ ALRNLA+D RNKELI                  GK+A+ +LV+ LP G 
Sbjct: 367 EHERVVKAASGALRNLAVDARNKELI------------------GKHAIPNLVKNLPGGQ 408
Query: 62  AQHDQGTSDDT 72
                  S+DT
Sbjct: 409 QNSSWNFSEDT 419
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-04

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 43.0 bits (100), Expect = 9e-07
 Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 18/72 (25%)

Query: 1   MEVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSG 60
            E +RVV AA+ ALRNLA+D RNKELI                  GK+A+ +LV+ LP G
Sbjct: 366 NEHERVVKAASGALRNLAVDARNKELI------------------GKHAIPNLVKNLPGG 407

Query: 61  NAQHDQGTSDDT 72
                   S+DT
Sbjct: 408 QQNSSWNFSEDT 419

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 18/63 (28%)

Query: 4   DRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQ 63
             VV + A+ L N++       ++                  G     ++ + L S    
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVM------------------GNQVFPEVTRLLTSHTGN 386

Query: 64  HDQ 66
              
Sbjct: 387 TSN 389

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.49
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	93.07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	90.15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	88.48
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	88.12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	81.99
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	81.52

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.96  E-value=4e-06  Score=66.11  Aligned_cols=50  Identities=56%  Similarity=0.742  Sum_probs=43.0

Q ss_pred             CchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhCCCCchhhhHHHHhhhCCCCCCCCCCCCC
Q psy15602          2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNAQHDQGTS   69 (72)
Q Consensus         2 ~~drVv~a~ataLRNLAlD~RNKeLI~~~~~~~~~~~~~~~~~~GkyAmrdLV~kLP~~~~~~~~~ls   69 (72)
                      ++++|+++++.|||||+.++.|++.|                  ++++++.||+.|++++.++.+.++
T Consensus       367 ~~~~v~~~A~~aL~nLs~~~~~~~~I------------------~~g~ip~LV~LL~~~~~~~~~~~s  416 (584)
T 3l6x_A          367 EHERVVKAASGALRNLAVDARNKELI------------------GKHAIPNLVKNLPGGQQNSSWNFS  416 (584)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHH------------------HHHHHHHHHHTSSSSSCSGGGTCC
T ss_pred             CCHHHHHHHHHHHHHHhCChhHHHHH------------------HhCCHHHHHHHhcCCcccccccch
Confidence            56899999999999999999999999                  999999999999998654333333

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.49  E-value=0.00017  Score=52.36  Aligned_cols=43  Identities=19%  Similarity=0.248  Sum_probs=39.7

Q ss_pred             CchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhCCCCchhhhHHHHhhhCCCCCC
Q psy15602          2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNA   62 (72)
Q Consensus         2 ~~drVv~a~ataLRNLAlD~RNKeLI~~~~~~~~~~~~~~~~~~GkyAmrdLV~kLP~~~~   62 (72)
                      ++++|.+.++.+|+||+.|++++++|                  ++++++.||+.|.++++
T Consensus       343 ~~~~v~~~A~~aL~nls~~~~~~~~i------------------~~~~i~~Lv~lL~~~~~  385 (457)
T 1xm9_A          343 GNSDVVRSGASLLSNMSRHPLLHRVM------------------GNQVFPEVTRLLTSHTG  385 (457)
T ss_dssp             SCHHHHHHHHHHHHHHHTSGGGHHHH------------------HHHTHHHHHHTTTSCCS
T ss_pred             CCHhHHHHHHHHHHHHhcCHHHHHHH------------------HHhhhHHHHHhccCCCC
Confidence            56889999999999999999999999                  89999999999998755

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=93.07  E-value=0.098  Score=36.56  Aligned_cols=37  Identities=19%  Similarity=0.132  Sum_probs=30.9

Q ss_pred             chHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhCCCCchhhhHHHHhhhC
Q psy15602          3 VDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKL   57 (72)
Q Consensus         3 ~drVv~a~ataLRNLAlD~RNKeLI~~~~~~~~~~~~~~~~~~GkyAmrdLV~kL   57 (72)
                      +..+...++++|.|||....||..|                  .+.++.-||+.+
T Consensus       108 ~~~~~e~a~~aL~nLS~~~~~k~~i------------------~~~~i~~Lv~ll  144 (233)
T 3tt9_A          108 DLETKKQITGLLWNLSSNDKLKNLM------------------ITEALLTLTENI  144 (233)
T ss_dssp             CHHHHHHHHHHHHHHHTSGGGHHHH------------------HHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHHHHHHcChhhHHHH------------------HhccHHHHHHHH
Confidence            3456777889999999999999999                  777888887765

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=90.15  E-value=0.35  Score=33.75  Aligned_cols=28  Identities=32%  Similarity=0.368  Sum_probs=23.6

Q ss_pred             CchHHHHHHHHHHHhhhhh-hhhHHHHHH
Q psy15602          2 EVDRVVCAAATALRNLAID-QRNKELIDA   29 (72)
Q Consensus         2 ~~drVv~a~ataLRNLAlD-~RNKeLI~~   29 (72)
                      +++.+.+.++.|||||+.+ ..||..|.+
T Consensus        64 ~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~   92 (233)
T 3tt9_A           64 QNEDVQRAVCGALRNLVFEDNDNKLEVAE   92 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4567889999999999994 889998854

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=88.48  E-value=0.57  Score=33.85  Aligned_cols=27  Identities=41%  Similarity=0.299  Sum_probs=23.3

Q ss_pred             CchHHHHHHHHHHHhhhhh-hhhHHHHH
Q psy15602          2 EVDRVVCAAATALRNLAID-QRNKELID   28 (72)
Q Consensus         2 ~~drVv~a~ataLRNLAlD-~RNKeLI~   28 (72)
                      ++..+...++.+||||+.+ ..||..|.
T Consensus        56 ~~~~~~~~A~~aL~nLa~~~~~~k~~i~   83 (457)
T 1xm9_A           56 PNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             SCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3567888999999999998 99999984

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=88.12  E-value=0.45  Score=34.41  Aligned_cols=29  Identities=21%  Similarity=0.543  Sum_probs=24.9

Q ss_pred             chHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q psy15602          3 VDRVVCAAATALRNLAIDQRNKELIDAFE   31 (72)
Q Consensus         3 ~drVv~a~ataLRNLAlD~RNKeLI~~~~   31 (72)
                      +++.+|.++.||.|+|.|+.|+..|.+.-
T Consensus        45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~G   73 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLSFDEEHRHAMNELG   73 (354)
T ss_dssp             GGGTHHHHHHHHHHHHTSHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            56788999999999999999999886543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=81.99  E-value=1.7  Score=34.28  Aligned_cols=24  Identities=21%  Similarity=0.073  Sum_probs=21.1

Q ss_pred             hHHHHHHHHHHHhhhhhhhhHHHH
Q psy15602          4 DRVVCAAATALRNLAIDQRNKELI   27 (72)
Q Consensus         4 drVv~a~ataLRNLAlD~RNKeLI   27 (72)
                      ..+...++.+|.|||.+..||..|
T Consensus       148 ~~~~e~aa~aL~nLS~~~~~k~~I  171 (584)
T 3l6x_A          148 MDLTEVITGTLWNLSSHDSIKMEI  171 (584)
T ss_dssp             HHHHHHHHHHHHHHTTSGGGHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchhhHHH
Confidence            356677888999999999999999

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=81.52  E-value=2.9  Score=30.11  Aligned_cols=25  Identities=28%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             chHHHHHHHHHHHhhhh-hhhhHHHH
Q psy15602          3 VDRVVCAAATALRNLAI-DQRNKELI   27 (72)
Q Consensus         3 ~drVv~a~ataLRNLAl-D~RNKeLI   27 (72)
                      ++.+.+.++.+|+|||. ...||..|
T Consensus       184 ~~~~~~~A~~aL~nLs~~~~~nk~~i  209 (354)
T 3nmw_A          184 KESTLKSVLSALWNLSAHCTENKADI  209 (354)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHccChhhhHHH
Confidence            45678889999999999 66888888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-04

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 2   EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIEL 39
            ++ +   AA  L  LA D+   E I+A  A   L EL
Sbjct: 472 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.07
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	80.7

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00072  Score=41.50  Aligned_cols=43  Identities=19%  Similarity=0.248  Sum_probs=37.3

Q ss_pred             CchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhCCCCchhhhHHHHhhhCCCCCC
Q psy15602          2 EVDRVVCAAATALRNLAIDQRNKELIDAFEANLILIELNLSPPAGKYAMRDLVQKLPSGNA   62 (72)
Q Consensus         2 ~~drVv~a~ataLRNLAlD~RNKeLI~~~~~~~~~~~~~~~~~~GkyAmrdLV~kLP~~~~   62 (72)
                      +++.+..+++.+|+||+.|..|++.|                  ++++++.|+..|.....
T Consensus       343 ~~~~v~~~a~~~l~~La~~~~~~~~i------------------~~~~i~~li~~L~~~~~  385 (457)
T d1xm9a1         343 GNSDVVRSGASLLSNMSRHPLLHRVM------------------GNQVFPEVTRLLTSHTG  385 (457)
T ss_dssp             SCHHHHHHHHHHHHHHHTSGGGHHHH------------------HHHTHHHHHHTTTSCCS
T ss_pred             ccHHHHHHHHHHHHHHhhChhHHHHH------------------HHhhHHHHHHHHhcccc
Confidence            46788999999999999999999999                  88888888888876543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.70  E-value=1.5  Score=26.18  Aligned_cols=26  Identities=12%  Similarity=0.176  Sum_probs=21.4

Q ss_pred             chHHHHHHHHHHHhhhh-hhhhHHHHH
Q psy15602          3 VDRVVCAAATALRNLAI-DQRNKELID   28 (72)
Q Consensus         3 ~drVv~a~ataLRNLAl-D~RNKeLI~   28 (72)
                      +..|.-.++.+|.||++ +.+||+.|.
T Consensus        15 ~~~~~~~a~~~l~~l~~~~~~~~~~i~   41 (457)
T d1xm9a1          15 DEKYQAIGAYYIQHTCFQDESAKQQVY   41 (457)
T ss_dssp             CTHHHHHHHHHHHHHTSSCSSHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45677788999999998 578999884