Psyllid ID: psy15623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFRRSRVLLFTGYY
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccEEEEEccccccccccHHHHHccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccEEEEEEEccccccccHHHHHHHccEEEEcccccccHHHHHHHHHccccccccccHHHHHccccccHHHHHHHHHHHHcccEEccccHHHHHHHHHcccccccHEEEccccc
Coil and Loop (DISEMBL)
mksellchmdgiasttnadptkSIVILgasnfpwniDDAFLRRLEKRiyvplpsssgrQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYtkktfcgknstpsqpkllqaerpfrrsRVLLFTGYY
Flexible Loop (DISEMBL)
MKSELLCHMDGiasttnadptKSIVILGASNFPWNIDDAFLRRLEKRIYvplpsssgrqELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTkktfcgknstpsqpkllqaerpfrrsrVLLFTGYY
Low Complexity Region (SEG)
MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFRRSRVLLFTGYY
Disordered region (IsUnstruct)
******CHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAV************************************VLLF****
Disordered Region (DISOPRED)
MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYT*************************SRVLLFTGYY
Disordered Region (DISEMBL)
MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFRRSRVLLFTGYY
Disordered Region (DISPRO)
*KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFRRSRVLLFT*YY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFRRSRVLLFTGYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
O75449	491	Katanin p60 ATPase-contai	yes	N/A	0.646	0.175	0.551	6e-25
Q1HGK7	492	Katanin p60 ATPase-contai	yes	N/A	0.646	0.174	0.551	8e-25
Q5RII9	485	Katanin p60 ATPase-contai	yes	N/A	0.646	0.177	0.511	1e-24
Q9WV86	491	Katanin p60 ATPase-contai	yes	N/A	0.646	0.175	0.540	2e-24
Q4R407	491	Katanin p60 ATPase-contai	N/A	N/A	0.646	0.175	0.540	2e-24
Q5U3S1	488	Katanin p60 ATPase-contai	no	N/A	0.646	0.176	0.540	5e-24
Q6E0V2	491	Katanin p60 ATPase-contai	yes	N/A	0.646	0.175	0.528	6e-24
Q0IIR9	492	Katanin p60 ATPase-contai	yes	N/A	0.646	0.174	0.505	1e-23
Q9PUL2	486	Katanin p60 ATPase-contai	N/A	N/A	0.646	0.176	0.505	1e-23
B5X3X5	486	Katanin p60 ATPase-contai	N/A	N/A	0.646	0.176	0.528	1e-23

>sp|O75449|KTNA1_HUMAN Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  T+ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 329 VKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D+DL  +++ +EG
Sbjct: 389 ELLRISLRELELADDVDLASIAENMEG 415

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. In neurons, microtubule release within the cell body may allow their subsequent transport into neuronal processes by microtubule dependent motor proteins. This transport is required for axonal growth.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 3

>sp|Q1HGK7|KTNA1_CHICK Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  +T N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 330 VKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 389

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D+DL  +++++EG
Sbjct: 390 ELLRINLRELELADDVDLANIAEKMEG 416

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 72/86 (83%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+ELL  MDG+  T+  DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR +
Sbjct: 324 VKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVD 383

Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           LL++ L+++DLA+D++++ +++Q+EG
Sbjct: 384 LLKINLKELDLANDVNMDKIAEQMEG 409

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9WV86|KTNA1_MOUSE Katanin p60 ATPase-containing subunit A1 OS=Mus musculus GN=Katna1 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           MK+ELL  MDG+  ++ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 329 MKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D++L  +++ +EG
Sbjct: 389 ELLRISLRELELADDVNLASIAENMEG 415

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. In neurons, microtubule release within the cell body allows their subsequent transport into neuronal processes by microtubule dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q4R407|KTNA1_MACFA Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  ++ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D+DL  +++ +EG
Sbjct: 389 ELLRISLRELELADDVDLASIAENMEG 415

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. In neurons, microtubule release within the cell body may allow their subsequent transport into neuronal processes by microtubule dependent motor proteins. This transport is required for axonal growth.

Macaca fascicularis (taxid: 9541)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5U3S1|KATL1_DANRE Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 70/87 (80%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIASTTNA-DPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +KSELL  MDG+     + DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLP++ GR 
Sbjct: 326 VKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 385

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELL++ LR+VD+ASD+DL + ++++EG
Sbjct: 386 ELLKINLREVDVASDVDLTVFAEKIEG 412

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  ++ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D++L  +++ +EG
Sbjct: 389 ELLRISLRELELADDVNLASIAENMEG 415

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. In neurons, microtubule release within the cell body allows their subsequent transport into neuronal processes by microtubule dependent motor proteins. This transport is required for axonal growth.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  ++ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 330 VKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 389

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ L++++LA D+++E +++ ++G
Sbjct: 390 ELLRINLKELELADDVNIECIAENMDG 416

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9PUL2|KTNA1_XENLA Katanin p60 ATPase-containing subunit A1 (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  ++ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 326 VKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 385

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ L++++LA D+++E +++ ++G
Sbjct: 386 ELLRINLKELELADDVNIECIAENMDG 412

Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

>sp|B5X3X5|KTNA1_SALSA Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  ++ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR 
Sbjct: 324 VKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRV 383

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ L++++LA+D+D+  +++Q EG
Sbjct: 384 ELLRINLKELELANDVDMAKIAEQSEG 410

Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Salmo salar (taxid: 8030)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
47220181	486	unnamed protein product [Tetraodon nigro	0.646	0.176	0.534	2e-23
5901990	491	katanin p60 ATPase-containing subunit A1	0.646	0.175	0.551	4e-23
119568179	363	katanin p60 (ATPase-containing) subunit	0.646	0.236	0.551	5e-23
113206090	492	katanin p60 ATPase-containing subunit A1	0.646	0.174	0.551	6e-23
326915696	492	PREDICTED: katanin p60 ATPase-containing	0.646	0.174	0.551	6e-23
410896340	486	PREDICTED: katanin p60 ATPase-containing	0.646	0.176	0.534	6e-23
348531082	488	PREDICTED: katanin p60 ATPase-containing	0.646	0.176	0.551	7e-23
410896336	486	PREDICTED: katanin p60 ATPase-containing	0.646	0.176	0.534	8e-23
410896338	435	PREDICTED: katanin p60 ATPase-containing	0.646	0.197	0.534	9e-23
291412430	491	PREDICTED: katanin p60 subunit A 1 [Oryc	0.646	0.175	0.540	9e-23

>gi|47220181|emb|CAG07322.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 72/86 (83%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +KSE L  MDG+ +T + DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+SGR E
Sbjct: 325 VKSEFLVQMDGMGNTPDEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSASGRAE 384

Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           LL++ L++V++A D+DL ++++++EG
Sbjct: 385 LLKINLKEVEVAEDVDLNVIAEKMEG 410

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|5901990|ref|NP_008975.1| katanin p60 ATPase-containing subunit A1 isoform 1 [Homo sapiens] gi|60390161|sp|O75449.1|KTNA1_HUMAN RecName: Full=Katanin p60 ATPase-containing subunit A1; Short=Katanin p60 subunit A1; AltName: Full=p60 katanin gi|3283072|gb|AAC25114.1| p60 katanin [Homo sapiens] gi|119568178|gb|EAW47793.1| katanin p60 (ATPase-containing) subunit A 1, isoform CRA_a [Homo sapiens] gi|119568180|gb|EAW47795.1| katanin p60 (ATPase-containing) subunit A 1, isoform CRA_a [Homo sapiens]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  T+ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 329 VKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D+DL  +++ +EG
Sbjct: 389 ELLRISLRELELADDVDLASIAENMEG 415

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119568179|gb|EAW47794.1| katanin p60 (ATPase-containing) subunit A 1, isoform CRA_b [Homo sapiens]

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  T+ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 201 VKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 260

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D+DL  +++ +EG
Sbjct: 261 ELLRISLRELELADDVDLASIAENMEG 287

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|113206090|ref|NP_001038113.1| katanin p60 ATPase-containing subunit A1 [Gallus gallus] gi|123909795|sp|Q1HGK7.1|KTNA1_CHICK RecName: Full=Katanin p60 ATPase-containing subunit A1; Short=Katanin p60 subunit A1; AltName: Full=p60 katanin gi|94471494|gb|ABF21049.1| p60 katanin [Gallus gallus]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  +T N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 330 VKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 389

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D+DL  +++++EG
Sbjct: 390 ELLRINLRELELADDVDLANIAEKMEG 416

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326915696|ref|XP_003204149.1| PREDICTED: katanin p60 ATPase-containing subunit A1-like [Meleagris gallopavo]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  +T N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 330 VKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 389

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D+DL  +++++EG
Sbjct: 390 ELLRINLRELELADDVDLANIAEKMEG 416

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410896340|ref|XP_003961657.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Takifugu rubripes]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 71/86 (82%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +KSE L  MDG+ +T + DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR E
Sbjct: 325 VKSEFLVQMDGMGNTQDEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAVGRVE 384

Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           LL++ L++V++A D+DL L+++++EG
Sbjct: 385 LLKINLKEVEVADDVDLNLIAEKIEG 410

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348531082|ref|XP_003453039.1| PREDICTED: katanin p60 ATPase-containing subunit A1-like [Oreochromis niloticus]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 73/87 (83%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  ++ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR 
Sbjct: 326 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSTKGRV 385

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELL++ LR+++LASD+DL+ +++Q+EG
Sbjct: 386 ELLKINLRELELASDVDLDKIAEQMEG 412

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410896336|ref|XP_003961655.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like isoform 1 [Takifugu rubripes]

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 71/86 (82%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +KSE L  MDG+ +T + DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR E
Sbjct: 325 VKSEFLVQMDGMGNTQDEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAVGRVE 384

Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           LL++ L++V++A D+DL L+++++EG
Sbjct: 385 LLKINLKEVEVADDVDLNLIAEKIEG 410

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410896338|ref|XP_003961656.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like isoform 2 [Takifugu rubripes]

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 71/86 (82%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +KSE L  MDG+ +T + DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR E
Sbjct: 274 VKSEFLVQMDGMGNTQDEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAVGRVE 333

Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           LL++ L++V++A D+DL L+++++EG
Sbjct: 334 LLKINLKEVEVADDVDLNLIAEKIEG 359

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291412430|ref|XP_002722481.1| PREDICTED: katanin p60 subunit A 1 [Oryctolagus cuniculus]

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 72/87 (82%), Gaps = 1/87 (1%)

Query: 1   MKSELLCHMDGIA-STTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
           +K+ELL  MDG+  ++ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct: 329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query: 60  ELLRLILRQVDLASDLDLELVSDQLEG 86
           ELLR+ LR+++LA D+DL  +++++EG
Sbjct: 389 ELLRISLRELELADDVDLASIAEKMEG 415

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
UNIPROTKB|F1S7T6	263	KATNA1 "Uncharacterized protei	0.646	0.326	0.540	4.8e-23
UNIPROTKB|O75449	491	KATNA1 "Katanin p60 ATPase-con	0.646	0.175	0.551	5.2e-23
UNIPROTKB|Q1HGK7	492	KATNA1 "Katanin p60 ATPase-con	0.646	0.174	0.551	8.8e-23
ZFIN|ZDB-GENE-050522-514	485	katna1 "katanin p60 (ATPase-co	0.646	0.177	0.511	1.8e-22
UNIPROTKB|E1BH39	491	KATNA1 "Uncharacterized protei	0.646	0.175	0.540	1.9e-22
UNIPROTKB|Q4R407	491	KATNA1 "Katanin p60 ATPase-con	0.646	0.175	0.540	1.9e-22
MGI|MGI:1344353	491	Katna1 "katanin p60 (ATPase-co	0.646	0.175	0.540	2.4e-22
ZFIN|ZDB-GENE-041114-141	488	katnal1 "katanin p60 subunit A	0.646	0.176	0.540	5e-22
UNIPROTKB|E2R3K3	491	KATNA1 "Uncharacterized protei	0.646	0.175	0.528	6.7e-22
RGD|1303062	491	Katna1 "katanin p60 (ATPase-co	0.646	0.175	0.528	6.7e-22

UNIPROTKB|F1S7T6 KATNA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 47/87 (54%), Positives = 70/87 (80%)

Query:     1 MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
             +K+ELL  MDG+   + N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct:   101 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 160

Query:    60 ELLRLILRQVDLASDLDLELVSDQLEG 86
             ELLR+ LR+++LA D+DL  +++ +EG
Sbjct:   161 ELLRISLRELELADDVDLASIAENMEG 187

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|O75449 KATNA1 "Katanin p60 ATPase-containing subunit A1" [Homo sapiens (taxid:9606)]

 Score = 271 (100.5 bits), Expect = 5.2e-23, P = 5.2e-23
 Identities = 48/87 (55%), Positives = 71/87 (81%)

Query:     1 MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
             +K+ELL  MDG+  T+ N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct:   329 VKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query:    60 ELLRLILRQVDLASDLDLELVSDQLEG 86
             ELLR+ LR+++LA D+DL  +++ +EG
Sbjct:   389 ELLRISLRELELADDVDLASIAENMEG 415

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0051329 "interphase of mitotic cell cycle" evidence=IMP

GO:0000922 "spindle pole" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|Q1HGK7 KATNA1 "Katanin p60 ATPase-containing subunit A1" [Gallus gallus (taxid:9031)]

 Score = 269 (99.8 bits), Expect = 8.8e-23, P = 8.8e-23
 Identities = 48/87 (55%), Positives = 71/87 (81%)

Query:     1 MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
             +K+ELL  MDG+   T N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct:   330 VKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 389

Query:    60 ELLRLILRQVDLASDLDLELVSDQLEG 86
             ELLR+ LR+++LA D+DL  +++++EG
Sbjct:   390 ELLRINLRELELADDVDLANIAEKMEG 416

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0030496 "midbody" evidence=ISS

ZFIN|ZDB-GENE-050522-514 katna1 "katanin p60 (ATPase-containing) subunit A 1" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 44/86 (51%), Positives = 72/86 (83%)

Query:     1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
             +K+ELL  MDG+  T+  DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR +
Sbjct:   324 VKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVD 383

Query:    61 LLRLILRQVDLASDLDLELVSDQLEG 86
             LL++ L+++DLA+D++++ +++Q+EG
Sbjct:   384 LLKINLKELDLANDVNMDKIAEQMEG 409

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0048675 "axon extension" evidence=IGI;IMP

GO:0030496 "midbody" evidence=ISS

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005819 "spindle" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|E1BH39 KATNA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 47/87 (54%), Positives = 70/87 (80%)

Query:     1 MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
             +K+ELL  MDG+   + N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct:   329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query:    60 ELLRLILRQVDLASDLDLELVSDQLEG 86
             ELLR+ LR+++LA D+DL  +++ +EG
Sbjct:   389 ELLRISLRELELADDVDLASIAENMEG 415

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q4R407 KATNA1 "Katanin p60 ATPase-containing subunit A1" [Macaca fascicularis (taxid:9541)]

 Score = 266 (98.7 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 47/87 (54%), Positives = 70/87 (80%)

Query:     1 MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
             +K+ELL  MDG+   + N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct:   329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query:    60 ELLRLILRQVDLASDLDLELVSDQLEG 86
             ELLR+ LR+++LA D+DL  +++ +EG
Sbjct:   389 ELLRISLRELELADDVDLASIAENMEG 415

GO:0000922 "spindle pole" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005819 "spindle" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

MGI|MGI:1344353 Katna1 "katanin p60 (ATPase-containing) subunit A1" [Mus musculus (taxid:10090)]

 Score = 265 (98.3 bits), Expect = 2.4e-22, P = 2.4e-22
 Identities = 47/87 (54%), Positives = 70/87 (80%)

Query:     1 MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
             MK+ELL  MDG+   + N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct:   329 MKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query:    60 ELLRLILRQVDLASDLDLELVSDQLEG 86
             ELLR+ LR+++LA D++L  +++ +EG
Sbjct:   389 ELLRISLRELELADDVNLASIAENMEG 415

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000922 "spindle pole" evidence=ISO

GO:0001578 "microtubule bundle formation" evidence=IGI

GO:0001764 "neuron migration" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005811 "lipid particle" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005819 "spindle" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISO

GO:0008104 "protein localization" evidence=IPI

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030424 "axon" evidence=ISO;IDA

GO:0030426 "growth cone" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0031122 "cytoplasmic microtubule organization" evidence=IDA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0045502 "dynein binding" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0051013 "microtubule severing" evidence=IGI;ISO

GO:0051301 "cell division" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=ISO

ZFIN|ZDB-GENE-041114-141 katnal1 "katanin p60 subunit A-like 1" [Danio rerio (taxid:7955)]

 Score = 262 (97.3 bits), Expect = 5.0e-22, P = 5.0e-22
 Identities = 47/87 (54%), Positives = 70/87 (80%)

Query:     1 MKSELLCHMDGIASTTNA-DPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
             +KSELL  MDG+     + DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLP++ GR 
Sbjct:   326 VKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRA 385

Query:    60 ELLRLILRQVDLASDLDLELVSDQLEG 86
             ELL++ LR+VD+ASD+DL + ++++EG
Sbjct:   386 ELLKINLREVDVASDVDLTVFAEKIEG 412

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|E2R3K3 KATNA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 261 (96.9 bits), Expect = 6.7e-22, P = 6.7e-22
 Identities = 46/87 (52%), Positives = 70/87 (80%)

Query:     1 MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
             +K+ELL  MDG+   + N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct:   329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query:    60 ELLRLILRQVDLASDLDLELVSDQLEG 86
             ELLR+ LR+++LA D++L  +++ +EG
Sbjct:   389 ELLRISLRELELADDVNLASIAENMEG 415

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA

GO:0051013 "microtubule severing" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0030424 "axon" evidence=IEA

RGD|1303062 Katna1 "katanin p60 (ATPase-containing) subunit A1" [Rattus norvegicus (taxid:10116)]

 Score = 261 (96.9 bits), Expect = 6.7e-22, P = 6.7e-22
 Identities = 46/87 (52%), Positives = 70/87 (80%)

Query:     1 MKSELLCHMDGIASTT-NADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQ 59
             +K+ELL  MDG+   + N DP+K +++L A+NFPW+ID+A  RRLEKRIY+PLPS+ GR+
Sbjct:   329 VKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRE 388

Query:    60 ELLRLILRQVDLASDLDLELVSDQLEG 86
             ELLR+ LR+++LA D++L  +++ +EG
Sbjct:   389 ELLRISLRELELADDVNLASIAENMEG 415

GO:0000922 "spindle pole" evidence=ISO;ISS

GO:0001578 "microtubule bundle formation" evidence=IEA;ISO

GO:0001764 "neuron migration" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISO;TAS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005819 "spindle" evidence=ISO;ISS

GO:0005874 "microtubule" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0007067 "mitosis" evidence=TAS

GO:0008017 "microtubule binding" evidence=IEA;ISO

GO:0008104 "protein localization" evidence=ISO;TAS

GO:0008568 "microtubule-severing ATPase activity" evidence=IEA;ISO

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISO;TAS

GO:0030424 "axon" evidence=ISO;IDA

GO:0030426 "growth cone" evidence=IDA

GO:0030496 "midbody" evidence=ISO;ISS

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA;ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045502 "dynein binding" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0051013 "microtubule severing" evidence=ISO;IDA

GO:0051301 "cell division" evidence=IEA

GO:0051329 "interphase of mitotic cell cycle" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RII9	KTNA1_DANRE	3, ., 6, ., 4, ., 3	0.5116	0.6466	0.1773	yes	N/A
O75449	KTNA1_HUMAN	3, ., 6, ., 4, ., 3	0.5517	0.6466	0.1751	yes	N/A
Q1HGK7	KTNA1_CHICK	3, ., 6, ., 4, ., 3	0.5517	0.6466	0.1747	yes	N/A
Q6E0V2	KTNA1_RAT	3, ., 6, ., 4, ., 3	0.5287	0.6466	0.1751	yes	N/A
Q0IIR9	KTNA1_XENTR	3, ., 6, ., 4, ., 3	0.5057	0.6466	0.1747	yes	N/A
Q9WV86	KTNA1_MOUSE	3, ., 6, ., 4, ., 3	0.5402	0.6466	0.1751	yes	N/A
Q9SEX2	KTNA1_ARATH	3, ., 6, ., 4, ., 3	0.5113	0.6466	0.1644	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	4e-14
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	6e-12
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	2e-11
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	5e-11
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	2e-10
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	6e-09
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	1e-07
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	3e-07
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	4e-07
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	2e-06
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	2e-06
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	4e-06
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	2e-05
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	5e-05

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 67.2 bits (164), Expect = 4e-14
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 10/90 (11%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
           +  +LL  +DGI      +  + ++++ A+N P ++D A LR  R ++ IYVPLP    R
Sbjct: 362 VVGQLLTELDGI------EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER 415

Query: 59  QELLRLILRQVD--LASDLDLELVSDQLEG 86
            E+ ++ LR     LA D+DLE +++  EG
Sbjct: 416 LEIFKIHLRDKKPPLAEDVDLEELAEITEG 445

Length = 494

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 61.1 bits (148), Expect = 6e-12
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)

Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDGI          ++V++ A+N P  +D A LR  R ++ I VP P    R+E
Sbjct: 576 NQLLTEMDGI------QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKE 629

Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           + ++  R + LA D+DLE +++  EG
Sbjct: 630 IFKIHTRSMPLAEDVDLEELAEMTEG 655

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 8/85 (9%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           ELL  +DG       DP  ++ ++ A+N P  +D A LR  R +++I  PLP   GR E+
Sbjct: 277 ELLNQLDGF------DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEI 330

Query: 62  LRLILRQVDLASDLDLELVSDQLEG 86
           L++  R+++LA D+DLEL++   EG
Sbjct: 331 LKIHTRKMNLADDVDLELLARLTEG 355

Length = 406

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 58.3 bits (141), Expect = 5e-11
 Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 8/85 (9%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           +LL  +DG       DP  ++ ++ A+N P  +D A LR  R ++ I VPLP   GR E+
Sbjct: 248 QLLAELDGF------DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEI 301

Query: 62  LRLILRQVDLASDLDLELVSDQLEG 86
           L++  R++ LA D+DLE ++   EG
Sbjct: 302 LKIHTRKMKLAEDVDLEAIAKMTEG 326

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 8/79 (10%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           +LL  MDG  + T       ++++ A+N P  +D A LR  R ++++ V LP   GR+E+
Sbjct: 180 QLLVEMDGFGTNTG------VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEI 233

Query: 62  LRLILRQVDLASDLDLELV 80
           L++  +   LA D+DL+ V
Sbjct: 234 LKVHAKNKKLAPDVDLKAV 252

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 52.5 bits (127), Expect = 6e-09
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 8/84 (9%)

Query: 5   LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELL 62
           LL  MDG       DP  ++ I+ A+N    +D A LR  R ++ I VPLP   GR E+L
Sbjct: 258 LLAEMDGF------DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEIL 311

Query: 63  RLILRQVDLASDLDLELVSDQLEG 86
           ++  R+++LA D+DLE +++  EG
Sbjct: 312 KIHTRKMNLADDVDLEELAELTEG 335

Length = 389

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 8/81 (9%)

Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           +++L  MDG       +  + I+++ A+N P  +D A LR  R ++++ V LP   GR++
Sbjct: 276 NQMLVEMDGF------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 329

Query: 61  LLRLILRQVDLASDLDLELVS 81
           +L++ +R+V LA D+D  +++
Sbjct: 330 ILKVHMRRVPLAPDIDAAIIA 350

Length = 644

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 47.6 bits (113), Expect = 3e-07
 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDG+           ++++GA+N P  +D A  R  R ++ I + +P    R+E
Sbjct: 300 AQLLTLMDGLKGRGR------VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKE 353

Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +L++  R + LA D+DL+ +++   G
Sbjct: 354 ILKVHTRNMPLAEDVDLDKLAEVTHG 379

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           +LL  MDG            ++++ A+N P  +D A LR  R +++I V LP   GR+++
Sbjct: 275 QLLVEMDGFGGNE------GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQI 328

Query: 62  LRLILRQVDLASDLDLELVSDQLEGNA 88
           L++  +   LA D+DL+ ++    G +
Sbjct: 329 LKVHAKNKPLAEDVDLKKIARGTPGFS 355

Length = 596

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           +LL  MDG          K ++++ A+N    +D A LR  R +++I V LP   GR ++
Sbjct: 308 QLLTEMDGF------KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDI 361

Query: 62  LRLILRQVDLASDLDLELV 80
           L++  R   L+ D+ LEL+
Sbjct: 362 LKVHARNKKLSPDVSLELI 380

Length = 638

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 8/77 (10%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           ELL  MDG   TTN       VI+ A+N    +D A LR  RL+++I  PLP    ++ +
Sbjct: 271 ELLNQMDGFDQTTNVK-----VIM-ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLI 324

Query: 62  LRLILRQVDLASDLDLE 78
            + I  +++L+ ++DLE
Sbjct: 325 FQTITSKMNLSEEVDLE 341

Length = 398

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 2   KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR-RLEKRIYVPL 52
            ++LL  +DG  S+ +      ++++ A+N P  +D A LR R ++ I  PL
Sbjct: 85  VNQLLTELDGFTSSLS-----KVIVIAATNRPDKLDPALLRGRFDRIIEFPL 131

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 17/141 (12%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
           + ++LL  MDG+           ++++GA+N P  +D A  R  R ++ I V LP  +GR
Sbjct: 103 VVAQLLALMDGLKR-------GQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155

Query: 59  QELLRLILRQVDLASDLDLELVSDQLEGN--------AVQQKVMKSYTKKTFCGKNSTPS 110
            E+L++  R + L      + ++ +  G         A +  + +        G+    +
Sbjct: 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVT 215

Query: 111 QPKLLQAERPFRRSRVLLFTG 131
           +    +A +    SR +LF  
Sbjct: 216 EDDFEEALKKVLPSRGVLFED 236

Length = 494

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 5   LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL 64
           LL  +DGI         + +V + A+N P  +D A   R E+ I   LP+   R E+L  
Sbjct: 242 LLTELDGIKEN------EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEY 295

Query: 65  ILRQVDLASDLDLELV---SDQLEGNAVQQKVMK 95
             ++  L  D DL  +   +  + G  +++KV+K
Sbjct: 296 YAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329

Length = 368

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.97
KOG0730|consensus	693		99.96
KOG0738|consensus	491		99.94
KOG0733|consensus	802		99.93
KOG0734|consensus	752		99.92
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.92
KOG0652|consensus	424		99.9
KOG0737|consensus	386		99.9
KOG0733|consensus	802		99.9
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.9
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.89
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.89
KOG0731|consensus	774		99.88
KOG0728|consensus	404		99.88
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.88
KOG0736|consensus	953		99.87
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.87
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.87
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.87
CHL00195	489	ycf46 Ycf46; Provisional	99.87
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.86
KOG0735|consensus	952		99.85
KOG0726|consensus	440		99.85
KOG0739|consensus	439		99.83
CHL00206	2281	ycf2 Ycf2; Provisional	99.83
KOG0727|consensus	408		99.83
KOG0740|consensus	428		99.82
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.82
CHL00176	638	ftsH cell division protein; Validated	99.82
KOG0741|consensus	744		99.81
KOG0730|consensus	693		99.81
KOG0729|consensus	435		99.81
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.76
KOG0732|consensus	1080		99.74
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.69
KOG0651|consensus	388		99.67
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.53
KOG0742|consensus	630		99.41
KOG0744|consensus	423		99.35
KOG0743|consensus	457		99.14
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.07
KOG0736|consensus	953		98.98
KOG0735|consensus	952		98.54
CHL00181	287	cbbX CbbX; Provisional	98.4
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.4
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.39
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	98.24
PF00004	132	AAA: ATPase family associated with various cellula	98.2
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.16
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.01
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.98
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	97.95
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.94
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.93
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.9
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.88
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.87
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.8
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.78
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	97.76
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.76
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.75
PRK06893	229	DNA replication initiation factor; Validated	97.74
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.73
PRK09087	226	hypothetical protein; Validated	97.68
PRK12402	337	replication factor C small subunit 2; Reviewed	97.67
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.62
PRK08727	233	hypothetical protein; Validated	97.55
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.54
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.54
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	97.54
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.53
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.5
PRK06620	214	hypothetical protein; Validated	97.49
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.47
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.45
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.45
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.44
PRK08084	235	DNA replication initiation factor; Provisional	97.41
PRK12422	445	chromosomal replication initiation protein; Provis	97.39
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.39
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.37
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.37
PRK04195	482	replication factor C large subunit; Provisional	97.37
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.35
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.35
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.33
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.33
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.31
PLN03025	319	replication factor C subunit; Provisional	97.29
PRK10865	857	protein disaggregation chaperone; Provisional	97.29
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.28
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.27
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	97.25
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.21
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	97.21
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	97.19
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.18
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.18
PTZ00112	1164	origin recognition complex 1 protein; Provisional	97.18
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.15
PHA02544	316	44 clamp loader, small subunit; Provisional	97.14
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	97.12
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.12
PRK04132	846	replication factor C small subunit; Provisional	97.1
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	97.07
PRK05642	234	DNA replication initiation factor; Validated	97.04
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.03
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.0
PRK13342	413	recombination factor protein RarA; Reviewed	96.99
PRK14087	450	dnaA chromosomal replication initiation protein; P	96.94
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.92
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.88
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.87
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	96.85
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	96.74
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	96.72
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	96.69
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.63
CHL00195	489	ycf46 Ycf46; Provisional	96.62
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.54
PRK06964	342	DNA polymerase III subunit delta'; Validated	96.53
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	96.51
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	96.48
PRK09112	351	DNA polymerase III subunit delta'; Validated	96.45
COG0593	408	DnaA ATPase involved in DNA replication initiation	96.34
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	96.31
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	96.3
PRK05707	328	DNA polymerase III subunit delta'; Validated	96.26
smart00350	509	MCM minichromosome maintenance proteins.	96.24
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	96.23
CHL00095	821	clpC Clp protease ATP binding subunit	96.16
PRK13341	725	recombination factor protein RarA/unknown domain f	96.03
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.01
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	95.98
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	95.65
COG0714	329	MoxR-like ATPases [General function prediction onl	95.34
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	95.24
PRK14700	300	recombination factor protein RarA; Provisional	95.2
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	95.15
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	95.06
PRK05564	313	DNA polymerase III subunit delta'; Validated	94.82
PRK07471	365	DNA polymerase III subunit delta'; Validated	94.71
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	94.65
KOG0989|consensus	346		94.14
PRK07399	314	DNA polymerase III subunit delta'; Validated	94.05
PRK07993	334	DNA polymerase III subunit delta'; Validated	93.86
PRK06090	319	DNA polymerase III subunit delta'; Validated	93.49
PRK08769	319	DNA polymerase III subunit delta'; Validated	92.99
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	92.98
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	92.44
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	92.01
PRK06871	325	DNA polymerase III subunit delta'; Validated	91.85
PRK09862	506	putative ATP-dependent protease; Provisional	91.59
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	91.3
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	91.25
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	91.19
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	91.1
COG2256	436	MGS1 ATPase related to the helicase subunit of the	90.3
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	90.06
PRK08058	329	DNA polymerase III subunit delta'; Validated	89.69
KOG2035|consensus	351		89.46
KOG2227|consensus	529		89.27
PHA02244	383	ATPase-like protein	89.19
PRK08699	325	DNA polymerase III subunit delta'; Validated	89.08
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	88.84
PRK08485	206	DNA polymerase III subunit delta'; Validated	88.32
KOG2028|consensus	554		86.46
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	84.97
PRK07276	290	DNA polymerase III subunit delta'; Validated	84.69
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	84.63
KOG1514|consensus	767		84.62
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	84.35
PRK06581	263	DNA polymerase III subunit delta'; Validated	84.33
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	83.99
TIGR01128	302	holA DNA polymerase III, delta subunit. subunit ar	83.34
PRK07132	299	DNA polymerase III subunit delta'; Validated	82.61
PRK10865	857	protein disaggregation chaperone; Provisional	82.56
CHL00095	821	clpC Clp protease ATP binding subunit	82.5
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	81.79
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	81.37

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.3e-30  Score=199.45  Aligned_cols=115  Identities=30%  Similarity=0.474  Sum_probs=108.1

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV   80 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l   80 (133)
                      -|||+|||||.+.+      +|-||+|||+|+.||||++|  |||++|+||+||.++|.+||+.|.+++.+..++|++.|
T Consensus       276 leLL~qlDGFD~~~------nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~l  349 (406)
T COG1222         276 LELLNQLDGFDPRG------NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELL  349 (406)
T ss_pred             HHHHHhccCCCCCC------CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHH
Confidence            48999999998876      99999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRR  123 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~  123 (133)
                      |+.|+|+|||||+++|..+.+++  .++..++++||.+|.++.-+
T Consensus       350 a~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~  394 (406)
T COG1222         350 ARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK  394 (406)
T ss_pred             HHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence            99999999999999988888755  77889999999999886654

>KOG0730|consensus

Probab=99.96  E-value=6.1e-29  Score=204.07  Aligned_cols=118  Identities=30%  Similarity=0.458  Sum_probs=110.3

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE   78 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~   78 (133)
                      |+|+||++|||+....      +|+||||||||+.||+|++|  |||+.|+||+||.+.|.+||+.++++++++.++|+.
T Consensus       554 VlsqLLtEmDG~e~~k------~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~  627 (693)
T KOG0730|consen  554 VLSQLLTEMDGLEALK------NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLE  627 (693)
T ss_pred             HHHHHHHHcccccccC------cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHH
Confidence            5899999999999876      99999999999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHhhhhc
Q psy15623         79 LVSDQLEGNAVQQKVMKSYTKKTFCG----KNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        79 ~la~~t~G~sgadi~~~~~~~~~~~~----~~~~i~~~dl~~a~~~~~~s  124 (133)
                      .||+.|+|||||||..+|..++..+.    ....+..+||++|++..+++
T Consensus       628 ~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s  677 (693)
T KOG0730|consen  628 ELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPS  677 (693)
T ss_pred             HHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccc
Confidence            99999999999999998888877663    45689999999999988776

>KOG0738|consensus

Probab=99.94  E-value=3e-27  Score=185.30  Aligned_cols=124  Identities=35%  Similarity=0.618  Sum_probs=108.9

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV   80 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l   80 (133)
                      ++++||.||||+....  +...-|+|+||||.||+||+|++|||+++|+||+|+.++|..+++..++..+.+++++++.|
T Consensus       332 vKsELLvQmDG~~~t~--e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~l  409 (491)
T KOG0738|consen  332 VKSELLVQMDGVQGTL--ENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDL  409 (491)
T ss_pred             HHHHHHHHhhcccccc--ccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHH
Confidence            5799999999998754  22445999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHhcC-------------------CCCCCHHHHHHHHHhhhhccc
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTFCGK-------------------NSTPSQPKLLQAERPFRRSRV  126 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~~~~-------------------~~~i~~~dl~~a~~~~~~s~~  126 (133)
                      |++++||||+||.++|..+.+...+                   ...++..||+.|++..++|..
T Consensus       410 ae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs  474 (491)
T KOG0738|consen  410 AERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS  474 (491)
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence            9999999999999887777663321                   135889999999999888743

>KOG0733|consensus

Probab=99.93  E-value=8.5e-26  Score=184.73  Aligned_cols=118  Identities=26%  Similarity=0.382  Sum_probs=102.1

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHh--cCCCCChhc
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILR--QVDLASDLD   76 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~--~~~~~~~~~   76 (133)
                      ||||||++|||+..+.      +|+||||||||+.||||++|  |||+.+++++|+.++|..||+.+.+  +.++++++|
T Consensus       631 vvNqLLtElDGl~~R~------gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd  704 (802)
T KOG0733|consen  631 VVNQLLTELDGLEERR------GVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD  704 (802)
T ss_pred             HHHHHHHHhccccccc------ceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC
Confidence            5899999999998876      99999999999999999999  9999999999999999999999999  788999999


Q ss_pred             HHHHHHHcC--CCCHHHHHHHHHHHHHHhc---------C---------CCCCCHHHHHHHHHhhhhc
Q psy15623         77 LELVSDQLE--GNAVQQKVMKSYTKKTFCG---------K---------NSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        77 ~~~la~~t~--G~sgadi~~~~~~~~~~~~---------~---------~~~i~~~dl~~a~~~~~~s  124 (133)
                      ++.||+.+.  |||||||..++..+...+.         +         ...++..||.+|...+++|
T Consensus       705 l~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS  772 (802)
T KOG0733|consen  705 LDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS  772 (802)
T ss_pred             HHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence            999999887  9999999865554433221         1         1136778999998877765

>KOG0734|consensus

Probab=99.92  E-value=1.6e-25  Score=181.11  Aligned_cols=112  Identities=29%  Similarity=0.480  Sum_probs=103.8

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +||||.+||||.++.      +|+||||||+|+.||+|++|  |||++|.+|.||...|.+||+.|+.+++++.++|+..
T Consensus       424 lNQLLvEmDGF~qNe------GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~i  497 (752)
T KOG0734|consen  424 LNQLLVEMDGFKQNE------GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKI  497 (752)
T ss_pred             HHHHHHHhcCcCcCC------ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhH
Confidence            689999999999987      99999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         80 VSDQLEGNAVQQKVMK--SYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        80 la~~t~G~sgadi~~~--~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      ||+-|.|||||||.++  .++..+...+...+++++|+.|-.
T Consensus       498 iARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akD  539 (752)
T KOG0734|consen  498 IARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKD  539 (752)
T ss_pred             hccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhh
Confidence            9999999999999874  455555667888999999998844

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.92  E-value=4.5e-25  Score=166.22  Aligned_cols=124  Identities=23%  Similarity=0.322  Sum_probs=111.8

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV   80 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l   80 (133)
                      +||.||++|||+.++.      +|+.|||||+|+.||||+.+||...|+|.+|+.++|..|++.+.+++|+.-+.++..+
T Consensus       238 iVNALLTelDgi~ene------GVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~  311 (368)
T COG1223         238 IVNALLTELDGIKENE------GVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYL  311 (368)
T ss_pred             HHHHHHHhccCcccCC------ceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHH
Confidence            5899999999999877      9999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHHcCCCCHHHHHH---HHHHHHHHhcCCCCCCHHHHHHHHHhhhhccccccc
Q psy15623         81 SDQLEGNAVQQKVM---KSYTKKTFCGKNSTPSQPKLLQAERPFRRSRVLLFT  130 (133)
Q Consensus        81 a~~t~G~sgadi~~---~~~~~~~~~~~~~~i~~~dl~~a~~~~~~s~~~~~~  130 (133)
                      ++.|.||||+||+.   ..+.-.++..++..++.+|++.|+++.++++.-...
T Consensus       312 ~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k~r~~r~~~p~  364 (368)
T COG1223         312 AAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKKERKRRAPRPK  364 (368)
T ss_pred             HHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHhhccccCCCcc
Confidence            99999999999985   355556677888899999999999987666544333

>KOG0652|consensus

Probab=99.90  E-value=6.8e-24  Score=160.37  Aligned_cols=117  Identities=20%  Similarity=0.328  Sum_probs=107.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV   80 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l   80 (133)
                      -+||+++|||.+..      +|-||+|||+.+-||||++|  |+|++|+||.|+.++|..|++.|.+++.+..++++++|
T Consensus       296 LELLNQLDGFss~~------~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeEL  369 (424)
T KOG0652|consen  296 LELLNQLDGFSSDD------RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEEL  369 (424)
T ss_pred             HHHHHhhcCCCCcc------ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHH
Confidence            37999999999877      99999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhcc
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s~  125 (133)
                      |+.|++|.|+++++.|..+.+  +..+...++.+||.+++-+.+..+
T Consensus       370 aRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqakK  416 (424)
T KOG0652|consen  370 ARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAKK  416 (424)
T ss_pred             hhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHhh
Confidence            999999999999987666655  457778999999999988776543

>KOG0737|consensus

Probab=99.90  E-value=1e-23  Score=164.23  Aligned_cols=97  Identities=31%  Similarity=0.575  Sum_probs=90.8

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV   80 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l   80 (133)
                      +++||...|||+.++.    +.+|+|+||||+|.+||.|++||+.++++|++|+.++|..||+.++++.++++++|+..+
T Consensus       213 mK~eFM~~WDGl~s~~----~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~i  288 (386)
T KOG0737|consen  213 MKNEFMALWDGLSSKD----SERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEI  288 (386)
T ss_pred             HHHHHHHHhccccCCC----CceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHH
Confidence            4789999999999876    557999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHH
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~  101 (133)
                      |.+|+||||+||+.+|..++.
T Consensus       289 A~~t~GySGSDLkelC~~Aa~  309 (386)
T KOG0737|consen  289 AQMTEGYSGSDLKELCRLAAL  309 (386)
T ss_pred             HHhcCCCcHHHHHHHHHHHhH
Confidence            999999999999987776654

>KOG0733|consensus

Probab=99.90  E-value=1.2e-23  Score=172.20  Aligned_cols=101  Identities=25%  Similarity=0.450  Sum_probs=92.4

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE   78 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~   78 (133)
                      ||+|||+.||++....  ..+.+|+||||||||+.||||++|  |||+.|.++.|+..+|.+||+..++++.++.++|+.
T Consensus       309 iVaQLlt~mD~l~~~~--~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~  386 (802)
T KOG0733|consen  309 IVAQLLTSMDELSNEK--TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFK  386 (802)
T ss_pred             HHHHHHHhhhcccccc--cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHH
Confidence            5899999999998754  335689999999999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHh
Q psy15623         79 LVSDQLEGNAVQQKVMKSYTKKTFC  103 (133)
Q Consensus        79 ~la~~t~G~sgadi~~~~~~~~~~~  103 (133)
                      +||+.|+||+||||.++|..++..+
T Consensus       387 qlA~lTPGfVGADL~AL~~~Aa~vA  411 (802)
T KOG0733|consen  387 QLAKLTPGFVGADLMALCREAAFVA  411 (802)
T ss_pred             HHHhcCCCccchhHHHHHHHHHHHH
Confidence            9999999999999998777766543

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.90  E-value=7.4e-23  Score=163.43  Aligned_cols=117  Identities=23%  Similarity=0.311  Sum_probs=105.7

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +.+||++||++....      +|+||+|||+|+.||||++|  |||++|+|++|+.++|..||+.++.+.++..++++..
T Consensus       269 l~~LL~~ld~~~~~~------~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~  342 (398)
T PTZ00454        269 LLELLNQMDGFDQTT------NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLED  342 (398)
T ss_pred             HHHHHHHhhccCCCC------CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHH
Confidence            568999999997765      89999999999999999999  9999999999999999999999999999889999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      +|+.|+||||+||.++|..+.+.+  .++..++.+||.+|++...+.
T Consensus       343 la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~  389 (398)
T PTZ00454        343 FVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK  389 (398)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence            999999999999998877776644  566789999999999876443

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.89  E-value=1.2e-22  Score=172.65  Aligned_cols=118  Identities=29%  Similarity=0.436  Sum_probs=104.1

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE   78 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~   78 (133)
                      ++++||++||++....      +|+||+|||+|+.||||++|  |||++|++|+|+.++|.+||+.+.++.++..++++.
T Consensus       574 ~~~~lL~~ldg~~~~~------~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~  647 (733)
T TIGR01243       574 IVNQLLTEMDGIQELS------NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLE  647 (733)
T ss_pred             HHHHHHHHhhcccCCC------CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHH
Confidence            4689999999998765      89999999999999999999  999999999999999999999999999998999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHhc--------------------CCCCCCHHHHHHHHHhhhhc
Q psy15623         79 LVSDQLEGNAVQQKVMKSYTKKTFCG--------------------KNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        79 ~la~~t~G~sgadi~~~~~~~~~~~~--------------------~~~~i~~~dl~~a~~~~~~s  124 (133)
                      .||+.|+||||+||..+|..+...+.                    ....++.+||.+|++..++|
T Consensus       648 ~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps  713 (733)
T TIGR01243       648 ELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS  713 (733)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence            99999999999999876655544221                    12368999999999988876

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=8.2e-23  Score=168.47  Aligned_cols=112  Identities=24%  Similarity=0.370  Sum_probs=105.1

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +||+|.+|||+.++.      +|++|++||||+-+|||++|  |||+.|.++.||...|++|++.|+++.++..++|+..
T Consensus       273 LNQlLvEmDGF~~~~------gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~  346 (596)
T COG0465         273 LNQLLVEMDGFGGNE------GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK  346 (596)
T ss_pred             HHHHHhhhccCCCCC------ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH
Confidence            689999999999766      99999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHH--HHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         80 VSDQLEGNAVQQKVMKS--YTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        80 la~~t~G~sgadi~~~~--~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      +|+.|+||||+||.+++  ++..+...+...++..|+.+|..
T Consensus       347 iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~d  388 (596)
T COG0465         347 IARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAID  388 (596)
T ss_pred             HhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHH
Confidence            99999999999999754  66666778889999999999976

>KOG0731|consensus

Probab=99.88  E-value=2.1e-22  Score=169.04  Aligned_cols=112  Identities=26%  Similarity=0.361  Sum_probs=103.0

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLE   78 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~   78 (133)
                      .||||.+|||+.+++      +|+|+|+||+|+-||+|++|  |||++|++++|+..+|.+|++.|+++.+++ .++++.
T Consensus       435 lnQll~emDgf~~~~------~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~  508 (774)
T KOG0731|consen  435 LNQLLVEMDGFETSK------GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLS  508 (774)
T ss_pred             HHHHHHHhcCCcCCC------cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHH
Confidence            589999999998876      99999999999999999999  999999999999999999999999998885 889999


Q ss_pred             HHHHHcCCCCHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         79 LVSDQLEGNAVQQKVMK--SYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        79 ~la~~t~G~sgadi~~~--~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      .||.+|+||||+||+++  .++..+.+.+...++..||+.|++
T Consensus       509 ~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~  551 (774)
T KOG0731|consen  509 KLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE  551 (774)
T ss_pred             HHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence            99999999999999975  444555667789999999999987

>KOG0728|consensus

Probab=99.88  E-value=1.4e-22  Score=152.50  Aligned_cols=113  Identities=22%  Similarity=0.369  Sum_probs=105.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV   80 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l   80 (133)
                      -+||+++|||....      ++-||.|||+.+-||||++|  |.|++|+||+|+.++|.+||+.+.+++++...+|+..+
T Consensus       272 lellnqldgfeatk------nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~ki  345 (404)
T KOG0728|consen  272 LELLNQLDGFEATK------NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKI  345 (404)
T ss_pred             HHHHHhcccccccc------ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHH
Confidence            37999999999877      99999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhh
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~  121 (133)
                      |++..|.||++++..|..+.+.+  +.+..+|++||+-|..+.
T Consensus       346 aekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kv  388 (404)
T KOG0728|consen  346 AEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV  388 (404)
T ss_pred             HHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence            99999999999999888887755  667789999999997643

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.6e-22  Score=163.85  Aligned_cols=118  Identities=29%  Similarity=0.464  Sum_probs=105.6

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCC--CCChhc
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVD--LASDLD   76 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~--~~~~~~   76 (133)
                      ++++||++||++....      +|+||+|||+||.||+|++|  |||++++|++||.++|.+||+.++++..  +..+++
T Consensus       362 ~~~~lL~~~d~~e~~~------~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~  435 (494)
T COG0464         362 VVGQLLTELDGIEKAE------GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVD  435 (494)
T ss_pred             HHHHHHHHhcCCCccC------ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhh
Confidence            4799999999999876      89999999999999999999  9999999999999999999999998543  457899


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHh--cC-CCCCCHHHHHHHHHhhhhc
Q psy15623         77 LELVSDQLEGNAVQQKVMKSYTKKTFC--GK-NSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        77 ~~~la~~t~G~sgadi~~~~~~~~~~~--~~-~~~i~~~dl~~a~~~~~~s  124 (133)
                      +..+++.|+||||+||..++..+....  .. ...++++||..|++..+++
T Consensus       436 ~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~  486 (494)
T COG0464         436 LEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPS  486 (494)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence            999999999999999998776666644  33 5589999999999998776

>KOG0736|consensus

Probab=99.87  E-value=2.7e-22  Score=167.44  Aligned_cols=121  Identities=21%  Similarity=0.347  Sum_probs=104.2

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCC-CHHHHHHHHHHHHhcCCCCChhcH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLP-SSSGRQELLRLILRQVDLASDLDL   77 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P-~~~~R~~il~~~~~~~~~~~~~~~   77 (133)
                      ||+|||.+|||+...    +++.||||||||||+.||||++|  |||+-++++++ +.+.+..+|+...+++.++.++|+
T Consensus       793 VVSQLLAELDgls~~----~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL  868 (953)
T KOG0736|consen  793 VVSQLLAELDGLSDS----SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL  868 (953)
T ss_pred             HHHHHHHHhhcccCC----CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH
Confidence            689999999999853    25699999999999999999999  99999999988 789999999999999999999999


Q ss_pred             HHHHHHc-CCCCHHHHHHHHHHHHHHh---------cC----------CCCCCHHHHHHHHHhhhhcc
Q psy15623         78 ELVSDQL-EGNAVQQKVMKSYTKKTFC---------GK----------NSTPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        78 ~~la~~t-~G~sgadi~~~~~~~~~~~---------~~----------~~~i~~~dl~~a~~~~~~s~  125 (133)
                      .+||+++ ..|||||+-++|..+...+         .+          .-.++++||.++.+++++|.
T Consensus       869 ~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv  936 (953)
T KOG0736|consen  869 VEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV  936 (953)
T ss_pred             HHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence            9999999 5899999976555443211         11          12678999999999998874

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.87  E-value=2.4e-21  Score=154.39  Aligned_cols=118  Identities=29%  Similarity=0.420  Sum_probs=105.3

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +.+||.++|++....      +|+||+|||+++.||+|++|  |||++|+|++|+.++|.+||+.++++.++..++++..
T Consensus       255 l~~lL~~ld~~~~~~------~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~  328 (389)
T PRK03992        255 LMQLLAEMDGFDPRG------NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEE  328 (389)
T ss_pred             HHHHHHhccccCCCC------CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHH
Confidence            457888899887655      89999999999999999999  9999999999999999999999999998888899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhcc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s~  125 (133)
                      +|..|+||||+||..+|..+...+  .+...++.+||.+|++..+++.
T Consensus       329 la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~  376 (389)
T PRK03992        329 LAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKE  376 (389)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccc
Confidence            999999999999998777666644  5667899999999999887653

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.87  E-value=1.7e-21  Score=156.99  Aligned_cols=126  Identities=20%  Similarity=0.271  Sum_probs=109.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +.+||.+||++....      +|.||+|||+++.||+|++|  |||++|+|++|+.++|.+||+.++.++.+..++++..
T Consensus       307 ll~LL~~Ldg~~~~~------~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~  380 (438)
T PTZ00361        307 MLELLNQLDGFDSRG------DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEE  380 (438)
T ss_pred             HHHHHHHHhhhcccC------CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHH
Confidence            457899999987655      89999999999999999998  9999999999999999999999999998888999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHhhhh-cccccccCCC
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERPFRR-SRVLLFTGYY  133 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~~~~-s~~~~~~~~~  133 (133)
                      ++..|+||||+||.++|..+...  ..++..++.+||..|++.... .+.-...|+|
T Consensus       381 la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~~~~~~~~~  437 (438)
T PTZ00361        381 FIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKGNIPEGLY  437 (438)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhcccCCCcccc
Confidence            99999999999999887766554  456678999999999987644 3444555665

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.87  E-value=1.8e-21  Score=163.38  Aligned_cols=114  Identities=25%  Similarity=0.431  Sum_probs=102.9

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +|+||.+||++.++.      +|+||+|||+|+.||||++|  |||++|+|++|+.++|.+||+.++++.++..++++..
T Consensus       275 ln~lL~~mdg~~~~~------~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~  348 (644)
T PRK10733        275 LNQMLVEMDGFEGNE------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAI  348 (644)
T ss_pred             HHHHHHhhhcccCCC------CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHH
Confidence            689999999998766      89999999999999999999  9999999999999999999999999999888999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~  121 (133)
                      +|+.|.||||+||.+++..++.  ...+...++..|+..|....
T Consensus       349 la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v  392 (644)
T PRK10733        349 IARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI  392 (644)
T ss_pred             HHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence            9999999999999976555544  44677789999999997644

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.87  E-value=2.2e-21  Score=158.29  Aligned_cols=116  Identities=12%  Similarity=0.160  Sum_probs=98.3

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCC--ChhcH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA--SDLDL   77 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~--~~~~~   77 (133)
                      +++||++|+.-.        .+|+||+|||+|+.||||++|  |||++++|++|+.++|.+||+.++++....  .+.++
T Consensus       347 l~~lL~~l~~~~--------~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl  418 (489)
T CHL00195        347 LATFITWLSEKK--------SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDI  418 (489)
T ss_pred             HHHHHHHHhcCC--------CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCH
Confidence            567888887532        389999999999999999999  999999999999999999999999876432  57899


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHhhhhcc
Q psy15623         78 ELVSDQLEGNAVQQKVMKSYTKKTFC-GKNSTPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        78 ~~la~~t~G~sgadi~~~~~~~~~~~-~~~~~i~~~dl~~a~~~~~~s~  125 (133)
                      +.||+.|+||||+||..++..+...+ .....++.+||..|++.+.|+-
T Consensus       419 ~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~~~Pls  467 (489)
T CHL00195        419 KKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREFTTDDILLALKQFIPLA  467 (489)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCc
Confidence            99999999999999987655554433 4456799999999999888863

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.86  E-value=6.5e-21  Score=155.88  Aligned_cols=114  Identities=25%  Similarity=0.395  Sum_probs=102.2

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||.+||++.++.      +|+||+|||+|+.||||++|  |||++|++++|+.++|.+||+.++++.+...++++..
T Consensus       178 ~~~lL~~~d~~~~~~------~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~  251 (495)
T TIGR01241       178 LNQLLVEMDGFGTNT------GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKA  251 (495)
T ss_pred             HHHHHhhhccccCCC------CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHH
Confidence            688999999998765      89999999999999999999  9999999999999999999999999888778899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~  121 (133)
                      +|+.|.||||+||..++..+..  ...+...++.+|+.+|+...
T Consensus       252 la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~  295 (495)
T TIGR01241       252 VARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV  295 (495)
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            9999999999999987665543  34566789999999998755

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0735|consensus

Probab=99.85  E-value=3.8e-21  Score=159.72  Aligned_cols=93  Identities=31%  Similarity=0.494  Sum_probs=87.3

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE   78 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~   78 (133)
                      ||||||++|||..+-.      +|.|+|||.||+.||||++|  |+|+.++.++|+..+|.+|++.+......+.++|++
T Consensus       787 VVNQlLTelDG~Egl~------GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~  860 (952)
T KOG0735|consen  787 VVNQLLTELDGAEGLD------GVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLE  860 (952)
T ss_pred             HHHHHHHhhccccccc------eEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchH
Confidence            5899999999999876      99999999999999999999  999999999999999999999999988889999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHH
Q psy15623         79 LVSDQLEGNAVQQKVMKSYTK   99 (133)
Q Consensus        79 ~la~~t~G~sgadi~~~~~~~   99 (133)
                      .+|..|+|||||||..++..+
T Consensus       861 ~~a~~T~g~tgADlq~ll~~A  881 (952)
T KOG0735|consen  861 CLAQKTDGFTGADLQSLLYNA  881 (952)
T ss_pred             HHhhhcCCCchhhHHHHHHHH
Confidence            999999999999998654433

>KOG0726|consensus

Probab=99.85  E-value=1.2e-21  Score=149.78  Aligned_cols=124  Identities=19%  Similarity=0.301  Sum_probs=110.3

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHH
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVS   81 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la   81 (133)
                      +||+++|||.+++      .|-||.|||+.+.||||++|  |.|++|+|++||...++.||..|..++.+..+++++.+.
T Consensus       311 ELLNQldGFdsrg------DvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li  384 (440)
T KOG0726|consen  311 ELLNQLDGFDSRG------DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELI  384 (440)
T ss_pred             HHHHhccCccccC------CeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHh
Confidence            7999999999877      99999999999999999999  999999999999999999999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh-cccccccCCC
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRR-SRVLLFTGYY  133 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~-s~~~~~~~~~  133 (133)
                      ..-+.+|||||+++|..+..++  +.+..++.+||..|.+..-. .+-....|||
T Consensus       385 ~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~~g~~egly  439 (440)
T KOG0726|consen  385 MTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKKEGVPEGLY  439 (440)
T ss_pred             hcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcccCCccccc
Confidence            9999999999999988876654  66778999999999775433 2444455666

>KOG0739|consensus

Probab=99.83  E-value=2.4e-21  Score=148.45  Aligned_cols=88  Identities=33%  Similarity=0.686  Sum_probs=81.7

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLEL   79 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~   79 (133)
                      |+++||.||.|+...+     .+|+|+||||-||.||.|++|||+++|+||+|+..+|..+++.++...+.. .+.|+..
T Consensus       252 IKTEfLVQMqGVG~d~-----~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~e  326 (439)
T KOG0739|consen  252 IKTEFLVQMQGVGNDN-----DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKE  326 (439)
T ss_pred             HHHHHHHhhhccccCC-----CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHH
Confidence            5789999999998653     699999999999999999999999999999999999999999999887665 7889999


Q ss_pred             HHHHcCCCCHHHHH
Q psy15623         80 VSDQLEGNAVQQKV   93 (133)
Q Consensus        80 la~~t~G~sgadi~   93 (133)
                      |+++|+||||+||.
T Consensus       327 L~~kTeGySGsDis  340 (439)
T KOG0739|consen  327 LARKTEGYSGSDIS  340 (439)
T ss_pred             HHhhcCCCCcCceE
Confidence            99999999999993

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.83  E-value=8.9e-20  Score=163.18  Aligned_cols=115  Identities=13%  Similarity=0.150  Sum_probs=95.6

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHH--hcCCCCC-hhc
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLIL--RQVDLAS-DLD   76 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~--~~~~~~~-~~~   76 (133)
                      +++||++|||.....   ...+|+||||||+|+.||||++|  |||+.|+|++|+..+|++++..++  ++.++.. .++
T Consensus      1754 L~qLLneLDg~~~~~---s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vd 1830 (2281)
T CHL00206       1754 LGLLVNSLSRDCERC---STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFH 1830 (2281)
T ss_pred             HHHHHHHhccccccC---CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCccccc
Confidence            688999999875321   13489999999999999999999  999999999999999999998754  4555553 368


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHH
Q psy15623         77 LELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        77 ~~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~  119 (133)
                      ++.+|+.|.|||||||++++..|+.  ...+...++..++..|+.
T Consensus      1831 l~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206       1831 TNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            9999999999999999976555554  456778999999999976

>KOG0727|consensus

Probab=99.83  E-value=4.3e-20  Score=139.31  Aligned_cols=114  Identities=24%  Similarity=0.319  Sum_probs=105.7

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +-+||++|||+..+.      +|-||+|||+.+.||||++|  |+|++|+||+|+..+++-+|.....++.+..++|++.
T Consensus       279 l~ellnqmdgfdq~~------nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~  352 (408)
T KOG0727|consen  279 LIELLNQMDGFDQTT------NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLED  352 (408)
T ss_pred             HHHHHHhccCcCccc------ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHH
Confidence            458999999998877      99999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~  121 (133)
                      +..+-+..||+||.++|..+.+++  .++..+...||+++-+..
T Consensus       353 ~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~  396 (408)
T KOG0727|consen  353 LVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTV  396 (408)
T ss_pred             HhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhh
Confidence            999999999999999988887755  678899999999997643

>KOG0740|consensus

Probab=99.82  E-value=4.2e-20  Score=147.44  Aligned_cols=120  Identities=29%  Similarity=0.483  Sum_probs=101.9

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLEL   79 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~   79 (133)
                      ++++||.++++..+..    .++|+||||||+||.+|.|++|||.++++||+|+.++|..+|+.++.+.+.. .+.+++.
T Consensus       272 ~ktefLiq~~~~~s~~----~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~  347 (428)
T KOG0740|consen  272 LKTEFLLQFDGKNSAP----DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISL  347 (428)
T ss_pred             hhhHHHhhhccccCCC----CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence            4689999999998764    6699999999999999999999999999999999999999999999877444 6789999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHH---------------hcCCCCCCHHHHHHHHHhhhhc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTF---------------CGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~---------------~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ||+.|+||||+||..+|..+.+-               ...-+.++..|+..+.+.++++
T Consensus       348 l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~  407 (428)
T KOG0740|consen  348 LAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS  407 (428)
T ss_pred             HHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence            99999999999998877766541               1223467888888888777665

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.82  E-value=2.4e-19  Score=141.61  Aligned_cols=114  Identities=28%  Similarity=0.438  Sum_probs=100.7

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +.++|.++|++...+      +|+||+|||+++.+|++++|  |||+.|+|++|+.++|.+||+.++.+..+..++++..
T Consensus       246 l~~ll~~ld~~~~~~------~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~  319 (364)
T TIGR01242       246 LMQLLAELDGFDPRG------NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEA  319 (364)
T ss_pred             HHHHHHHhhCCCCCC------CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHH
Confidence            356788888886654      89999999999999999999  9999999999999999999999999988887899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~~  121 (133)
                      +++.|+||||+||.+++..+.+.  ..++..++.+||.+|++.+
T Consensus       320 la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~  363 (364)
T TIGR01242       320 IAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV  363 (364)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence            99999999999999876666554  4667789999999998753

Many proteins may score above the trusted cutoff because an internal

>CHL00176 ftsH cell division protein; Validated

Probab=99.82  E-value=1.1e-19  Score=152.27  Aligned_cols=114  Identities=26%  Similarity=0.379  Sum_probs=101.7

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||.+||++..+.      +|+||+|||+|+.+|+|++|  |||++|++++|+.++|.+||+.++++.+...++++..
T Consensus       306 L~~LL~~~dg~~~~~------~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~  379 (638)
T CHL00176        306 LNQLLTEMDGFKGNK------GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLEL  379 (638)
T ss_pred             HHHHHhhhccccCCC------CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHH
Confidence            578999999998765      89999999999999999999  9999999999999999999999999887788899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHH--HHhcCCCCCCHHHHHHHHHhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKK--TFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~--~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      +|+.|.||||+||.+++..++  +...+...++.+|+.+|+..+
T Consensus       380 lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv  423 (638)
T CHL00176        380 IARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV  423 (638)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence            999999999999997655443  344666789999999998754

>KOG0741|consensus

Probab=99.81  E-value=5.2e-21  Score=155.05  Aligned_cols=118  Identities=25%  Similarity=0.409  Sum_probs=102.6

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcC----CCCCh
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQV----DLASD   74 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~----~~~~~   74 (133)
                      ||||||..|||+.+-.      +++|||.|||++.||+|++|  ||+-.+++.+||++.|.+|++.|.+++    .++.+
T Consensus       353 VVNQLLsKmDGVeqLN------NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~d  426 (744)
T KOG0741|consen  353 VVNQLLSKMDGVEQLN------NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSAD  426 (744)
T ss_pred             HHHHHHHhcccHHhhh------cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCC
Confidence            6899999999999876      99999999999999999999  999999999999999999999999764    45689


Q ss_pred             hcHHHHHHHcCCCCHHHHHHHHHHHHHHhcC-----------------CCCCCHHHHHHHHHhhhhc
Q psy15623         75 LDLELVSDQLEGNAVQQKVMKSYTKKTFCGK-----------------NSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        75 ~~~~~la~~t~G~sgadi~~~~~~~~~~~~~-----------------~~~i~~~dl~~a~~~~~~s  124 (133)
                      +|+++||..|..||||+|..+..++...+.+                 .-.++..||..|+.+++|.
T Consensus       427 Vdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA  493 (744)
T KOG0741|consen  427 VDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA  493 (744)
T ss_pred             cCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence            9999999999999999998665555443211                 2367899999999988775

>KOG0730|consensus

Probab=99.81  E-value=1.3e-19  Score=149.42  Aligned_cols=115  Identities=25%  Similarity=0.415  Sum_probs=104.0

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh-ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR-RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r-Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      ++++|++.||++.+..      +|+||++||+|+.|||++.| |||+.++++.|+..+|.+|++.+.++++..+++++..
T Consensus       304 v~sqlltL~dg~~~~~------~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~  377 (693)
T KOG0730|consen  304 VVSQLLTLLDGLKPDA------KVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLED  377 (693)
T ss_pred             HHHHHHHHHhhCcCcC------cEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHH
Confidence            4789999999998765      99999999999999999999 9999999999999999999999999999888899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhhhc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      +|..|+||+|+||..+|..+...+..+   +.+++..|....++|
T Consensus       378 iA~~thGyvGaDL~~l~~ea~~~~~r~---~~~~~~~A~~~i~ps  419 (693)
T KOG0730|consen  378 IAVSTHGYVGADLAALCREASLQATRR---TLEIFQEALMGIRPS  419 (693)
T ss_pred             HHHHccchhHHHHHHHHHHHHHHHhhh---hHHHHHHHHhcCCch
Confidence            999999999999998887776655444   788888888777665

>KOG0729|consensus

Probab=99.81  E-value=2.9e-20  Score=141.09  Aligned_cols=113  Identities=22%  Similarity=0.394  Sum_probs=104.5

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV   80 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l   80 (133)
                      -+|++++|||..++      ++-|+.|||+|+.||||++|  |+|++++|.+|+.+.|..||+.|.+.+.++.++-++-|
T Consensus       302 leli~qldgfdprg------nikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ell  375 (435)
T KOG0729|consen  302 LELINQLDGFDPRG------NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELL  375 (435)
T ss_pred             HHHHHhccCCCCCC------CeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHH
Confidence            37899999998766      99999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhh
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~  121 (133)
                      |+.|+.-+|++|+..|..+.+.+  ..+...+..||+.|+.+.
T Consensus       376 arlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kv  418 (435)
T KOG0729|consen  376 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKV  418 (435)
T ss_pred             HhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999999999999988888755  667789999999997644

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.76  E-value=8.2e-18  Score=137.75  Aligned_cols=122  Identities=24%  Similarity=0.293  Sum_probs=94.6

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhc-CCCC-----
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQ-VDLA-----   72 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~-~~~~-----   72 (133)
                      ++++||++||++.+.+      +|+||+|||+|+.||||++|  |||.+|+|++|+.++|.+||+.++.+ .++.     
T Consensus       317 il~~LL~~LDgl~~~~------~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~  390 (512)
T TIGR03689       317 VVPQLLSELDGVESLD------NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAE  390 (512)
T ss_pred             HHHHHHHHhcccccCC------ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHH
Confidence            3689999999998765      89999999999999999999  99999999999999999999999864 3441     


Q ss_pred             ----ChhcHHHHHHH-----------------------------cCCCCHHHHHHHHHHHHH------HhcCCCCCCHHH
Q psy15623         73 ----SDLDLELVSDQ-----------------------------LEGNAVQQKVMKSYTKKT------FCGKNSTPSQPK  113 (133)
Q Consensus        73 ----~~~~~~~la~~-----------------------------t~G~sgadi~~~~~~~~~------~~~~~~~i~~~d  113 (133)
                          ...++..++++                             ++.+||++|++++..+..      +..+...++.+|
T Consensus       391 ~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~  470 (512)
T TIGR03689       391 FDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEH  470 (512)
T ss_pred             hcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHH
Confidence                22334444433                             467999999876554443      234556899999


Q ss_pred             HHHHHH-hhhhccccc
Q psy15623        114 LLQAER-PFRRSRVLL  128 (133)
Q Consensus       114 l~~a~~-~~~~s~~~~  128 (133)
                      +..|+. +|+.+.-+.
T Consensus       471 l~~a~~~e~~~~~~~~  486 (512)
T TIGR03689       471 LLAAVLDEFRESEDLP  486 (512)
T ss_pred             HHHHHHHhhcccccCC
Confidence            999977 566555443

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG0732|consensus

Probab=99.74  E-value=1.3e-17  Score=143.82  Aligned_cols=117  Identities=24%  Similarity=0.343  Sum_probs=99.9

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDL   77 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~   77 (133)
                      ||++||..|||+.+++      +|+||||||||+.+|||++|  |||+.++|++|+.++|..|+..+.++.... ...-+
T Consensus       390 IvSTLLaLmdGldsRg------qVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~  463 (1080)
T KOG0732|consen  390 IVSTLLALMDGLDSRG------QVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELL  463 (1080)
T ss_pred             HHHHHHHhccCCCCCC------ceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHH
Confidence            6899999999999987      99999999999999999999  999999999999999999999999876533 44567


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHhcCC------------------CCCCHHHHHHHHHhhhh
Q psy15623         78 ELVSDQLEGNAVQQKVMKSYTKKTFCGKN------------------STPSQPKLLQAERPFRR  123 (133)
Q Consensus        78 ~~la~~t~G~sgadi~~~~~~~~~~~~~~------------------~~i~~~dl~~a~~~~~~  123 (133)
                      ..+|+.|.||.|+||+++|..++.....+                  ..+...||..|+...-+
T Consensus       464 ~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p  527 (1080)
T KOG0732|consen  464 LWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP  527 (1080)
T ss_pred             HHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCC
Confidence            88999999999999999988887755332                  24667788888765443

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.69  E-value=3.5e-16  Score=133.22  Aligned_cols=118  Identities=24%  Similarity=0.385  Sum_probs=101.0

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++|++.||++....      +|+||++||+|+.||++++|  ||++.+++++|+.++|.+||+.+.+..++..+.++..
T Consensus       299 ~~~Ll~~ld~l~~~~------~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~  372 (733)
T TIGR01243       299 VAQLLTLMDGLKGRG------RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDK  372 (733)
T ss_pred             HHHHHHHhhccccCC------CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHH
Confidence            578999999998765      89999999999999999999  9999999999999999999999999988888899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh---------------------cCCCCCCHHHHHHHHHhhhhcc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC---------------------GKNSTPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~---------------------~~~~~i~~~dl~~a~~~~~~s~  125 (133)
                      +++.|+||+|+||..++..+...+                     .....++.+||..|++..+++.
T Consensus       373 la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~  439 (733)
T TIGR01243       373 LAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA  439 (733)
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc
Confidence            999999999999986555443321                     0123578899999998887763

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0651|consensus

Probab=99.67  E-value=1.8e-17  Score=127.49  Aligned_cols=115  Identities=23%  Similarity=0.380  Sum_probs=102.4

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV   80 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l   80 (133)
                      -+||++|||+....      +|-+|+|||+|+.||||++|  |+|+++++|+|+...|..|++.+...+....++|.+.+
T Consensus       257 MeLlnqmdgfd~l~------rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eai  330 (388)
T KOG0651|consen  257 MELLNQMDGFDTLH------RVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAI  330 (388)
T ss_pred             HHHHHhhccchhcc------cccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHH
Confidence            46889999998876      99999999999999999999  99999999999999999999999999888899999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRR  123 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~  123 (133)
                      .+.++||.|+|+.+.|..+.++.  .....+-.+|+..++.+...
T Consensus       331 vK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~  375 (388)
T KOG0651|consen  331 LKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQAD  375 (388)
T ss_pred             HHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHH
Confidence            99999999999998888877755  44556778888888765543

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.53  E-value=2.7e-14  Score=112.79  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=71.2

Q ss_pred             HHHHHHhhCCCC------CCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCCh
Q psy15623          3 SELLCHMDGIAS------TTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASD   74 (133)
Q Consensus         3 ~~lL~~lD~~~~------~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~   74 (133)
                      .+||+.||+...      ..+.+...+|+||+|||+|+.||||++|  |||+.+  .+|+.++|.+||+.++++..++ .
T Consensus       242 ~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~  318 (413)
T PLN00020        242 GTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-R  318 (413)
T ss_pred             HHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-H
Confidence            689999997521      0012345689999999999999999999  999975  5899999999999999998776 6


Q ss_pred             hcHHHHHHHcCC----CCHHHH
Q psy15623         75 LDLELVSDQLEG----NAVQQK   92 (133)
Q Consensus        75 ~~~~~la~~t~G----~sgadi   92 (133)
                      .++..|++.++|    |+||--
T Consensus       319 ~dv~~Lv~~f~gq~~Df~GAlr  340 (413)
T PLN00020        319 EDVVKLVDTFPGQPLDFFGALR  340 (413)
T ss_pred             HHHHHHHHcCCCCCchhhhHHH
Confidence            889999999987    556543

>KOG0742|consensus

Probab=99.41  E-value=2e-12  Score=103.17  Aligned_cols=98  Identities=22%  Similarity=0.308  Sum_probs=73.5

Q ss_pred             CCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC------------------------CC---
Q psy15623         20 PTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD------------------------LA---   72 (133)
Q Consensus        20 ~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~------------------------~~---   72 (133)
                      .+..++++.|||+|.++|.|+-.|||..++||+|..|+|..+|..|+.++-                        +.   
T Consensus       482 qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~  561 (630)
T KOG0742|consen  482 QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFD  561 (630)
T ss_pred             cccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccch
Confidence            455899999999999999999999999999999999999999999986531                        00   


Q ss_pred             ChhcHHHHHHHcCCCCHHHHHHHHHHHHH-HhcCCCCCCHHHHHHH
Q psy15623         73 SDLDLELVSDQLEGNAVQQKVMKSYTKKT-FCGKNSTPSQPKLLQA  117 (133)
Q Consensus        73 ~~~~~~~la~~t~G~sgadi~~~~~~~~~-~~~~~~~i~~~dl~~a  117 (133)
                      .+.-+.+.|+.|+||||++|..+.+...+ ..+....+-.+.++..
T Consensus       562 t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e  607 (630)
T KOG0742|consen  562 TGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDE  607 (630)
T ss_pred             HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence            11225778999999999999875544333 3344444444444433

>KOG0744|consensus

Probab=99.35  E-value=2.8e-12  Score=99.61  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=95.3

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC----------
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD----------   70 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~----------   70 (133)
                      +||.+|+|||.+++.+      +|++++|+|..+.||.|+..|-|.+.++++|+.++|.+|++.++..+-          
T Consensus       281 vVNalLTQlDrlK~~~------NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~  354 (423)
T KOG0744|consen  281 VVNALLTQLDRLKRYP------NVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQR  354 (423)
T ss_pred             HHHHHHHHHHHhccCC------CEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeecc
Confidence            5899999999999987      999999999999999999999999999999999999999999885421          


Q ss_pred             ---CC-----ChhcHHHHHHHc-CCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q psy15623         71 ---LA-----SDLDLELVSDQL-EGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERP  120 (133)
Q Consensus        71 ---~~-----~~~~~~~la~~t-~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~~  120 (133)
                         ..     .+.....+.+.. .|.||+.|+.+-..+.+..-+...++.++|..|+.+
T Consensus       355 s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~~~~~v~~~~fl~al~e  413 (423)
T KOG0744|consen  355 STGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEYFRTFTVDLSNFLLALLE  413 (423)
T ss_pred             chhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhccCCCccChHHHHHHHHH
Confidence               00     112233344444 899999999988888887778889999999999653

>KOG0743|consensus

Probab=99.14  E-value=2.1e-10  Score=92.14  Aligned_cols=88  Identities=23%  Similarity=0.217  Sum_probs=70.2

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCC-CCChhcHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVD-LASDLDLE   78 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~-~~~~~~~~   78 (133)
                      .+.||+.+||+.+..    .+--++|.|||+++.||||++|  |.|.+|+++..+.++-+.+++.|+.... ..---+++
T Consensus       321 lSGLLNfiDGlwSsc----g~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie  396 (457)
T KOG0743|consen  321 LSGLLNFLDGLWSSC----GDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIE  396 (457)
T ss_pred             hHHhhhhhccccccC----CCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHH
Confidence            468999999999865    3467899999999999999999  9999999999999999999999996532 11112344


Q ss_pred             HHHHHcCCCCHHHHHH
Q psy15623         79 LVSDQLEGNAVQQKVM   94 (133)
Q Consensus        79 ~la~~t~G~sgadi~~   94 (133)
                      .+.+.++ +||||+..
T Consensus       397 ~l~~~~~-~tPA~V~e  411 (457)
T KOG0743|consen  397 RLIEETE-VTPAQVAE  411 (457)
T ss_pred             HHhhcCc-cCHHHHHH
Confidence            4444444 79999963

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.2e-09  Score=87.91  Aligned_cols=117  Identities=23%  Similarity=0.293  Sum_probs=100.9

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE   78 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~   78 (133)
                      ++++++..||++. ..      .|+++++||++..+|+++.+  ||++.++++.|+.+.|.+|+..+...+....+.+..
T Consensus       103 v~~~l~~~~d~~~-~~------~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~  175 (494)
T COG0464         103 VVAQLLALMDGLK-RG------QVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGK  175 (494)
T ss_pred             HHHHHHHhccccc-CC------ceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHH
Confidence            3688999999998 44      49999999999999999999  999999999999999999999999998888889999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHh--------cCCCCCCHHHHHHHHHhhhhc
Q psy15623         79 LVSDQLEGNAVQQKVMKSYTKKTFC--------GKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        79 ~la~~t~G~sgadi~~~~~~~~~~~--------~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      .++..+.|++++|+..++..+....        .....++.+++.++++.+.++
T Consensus       176 ~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~  229 (494)
T COG0464         176 TLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS  229 (494)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence            9999999999999987664433322        224568899999999988775

>KOG0736|consensus

Probab=98.98  E-value=6.5e-09  Score=88.22  Aligned_cols=104  Identities=14%  Similarity=0.220  Sum_probs=87.9

Q ss_pred             CCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHH-
Q psy15623         21 TKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTK-   99 (133)
Q Consensus        21 ~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~-   99 (133)
                      .++++||++|+..+.+++.+.+-|-..|.++.|+.++|.+||+.++....+..++.+..+|.+|.|||.+|+.++.+-. 
T Consensus       531 ~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s  610 (953)
T KOG0736|consen  531 CPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSS  610 (953)
T ss_pred             CCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCch
Confidence            3599999999999999999999999999999999999999999999999999999999999999999999996421111 


Q ss_pred             -------HH--------------HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623        100 -------KT--------------FCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus       100 -------~~--------------~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                             ..              .+.....++.+||-.++...|++
T Consensus       611 ~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~  656 (953)
T KOG0736|consen  611 LAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKE  656 (953)
T ss_pred             HHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHh
Confidence                   10              11123578999999999877765

>KOG0735|consensus

Probab=98.54  E-value=4.6e-07  Score=76.79  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=83.9

Q ss_pred             CcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHH
Q psy15623         22 KSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYT   98 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~   98 (133)
                      ..+.|||+.+....|.|-+..  +|+.++.++.|+.++|.+||+.++++.... ...|+.-++.+|+||...|+.-....
T Consensus       540 ~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeR  619 (952)
T KOG0735|consen  540 RKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVER  619 (952)
T ss_pred             cEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHH
Confidence            368999999999999999998  999999999999999999999999875433 34456669999999999999642111


Q ss_pred             ------HHHHhcCCCCCCHHHHHHHHHhhhhcc
Q psy15623         99 ------KKTFCGKNSTPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        99 ------~~~~~~~~~~i~~~dl~~a~~~~~~s~  125 (133)
                            ....+.+.+.++.++|.++++.|-+..
T Consensus       620 ai~~a~leris~~~klltke~f~ksL~~F~P~a  652 (952)
T KOG0735|consen  620 AIHEAFLERISNGPKLLTKELFEKSLKDFVPLA  652 (952)
T ss_pred             HHHHHHHHHhccCcccchHHHHHHHHHhcChHH
Confidence                  123445556899999999999876653

>CHL00181 cbbX CbbX; Provisional

Probab=98.40  E-value=7e-06  Score=63.36  Aligned_cols=116  Identities=12%  Similarity=0.128  Sum_probs=72.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC--CCCh
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD--LASD   74 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~--~~~~   74 (133)
                      +..|+..|+...        .+++||+|++...     .++|++.+||+.+|+|+.++.+++.+|++.++.+..  ++.+
T Consensus       148 ~~~L~~~me~~~--------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~  219 (287)
T CHL00181        148 IEILLQVMENQR--------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE  219 (287)
T ss_pred             HHHHHHHHhcCC--------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence            356677777543        2678888876422     346999999999999999999999999999997643  3322


Q ss_pred             hcHHHHH----HH--cCCCC-HHHHHHHHHH------HHHHhcCCCCCCHHHHHHH-HHhhhhccc
Q psy15623         75 LDLELVS----DQ--LEGNA-VQQKVMKSYT------KKTFCGKNSTPSQPKLLQA-ERPFRRSRV  126 (133)
Q Consensus        75 ~~~~~la----~~--t~G~s-gadi~~~~~~------~~~~~~~~~~i~~~dl~~a-~~~~~~s~~  126 (133)
                      . ...+.    +.  .+.|. ++++++....      .+....+...++.+|+..- -+++.+|++
T Consensus       220 ~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~~~~  284 (287)
T CHL00181        220 A-EKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGRVLTKADLVTIEAEDILKSRL  284 (287)
T ss_pred             H-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCHHHHhHHHh
Confidence            2 22233    22  24566 8888753222      1222334445677776544 224444443

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.40  E-value=8.4e-06  Score=62.67  Aligned_cols=98  Identities=8%  Similarity=0.041  Sum_probs=74.2

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK  100 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~  100 (133)
                      +++++|++||++..+++++++||...+++++|+.+++.++++......... ++..++.|++.+.|.- +.+..++..+.
T Consensus       128 ~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~  206 (305)
T TIGR00635       128 PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR  206 (305)
T ss_pred             CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence            358999999999999999999999999999999999999999988754443 3445788999999854 55443333332


Q ss_pred             HH--hcCCCCCCHHHHHHHHHh
Q psy15623        101 TF--CGKNSTPSQPKLLQAERP  120 (133)
Q Consensus       101 ~~--~~~~~~i~~~dl~~a~~~  120 (133)
                      ..  ..+...++.+.+.+++..
T Consensus       207 ~~a~~~~~~~it~~~v~~~l~~  228 (305)
T TIGR00635       207 DFAQVRGQKIINRDIALKALEM  228 (305)
T ss_pred             HHHHHcCCCCcCHHHHHHHHHH
Confidence            22  234456888888888765

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.39  E-value=8.3e-06  Score=63.74  Aligned_cols=99  Identities=7%  Similarity=0.046  Sum_probs=75.9

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~  101 (133)
                      ++++|++||++..+++++++||...++++.|+.+++.+|++......... ++.-+..|++.+.|.- +.+..++.....
T Consensus       150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~  228 (328)
T PRK00080        150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD  228 (328)
T ss_pred             CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999998765444 3445889999999854 544444433332


Q ss_pred             H--hcCCCCCCHHHHHHHHHhhh
Q psy15623        102 F--CGKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus       102 ~--~~~~~~i~~~dl~~a~~~~~  122 (133)
                      .  ..+...++.+++..+++.+.
T Consensus       229 ~a~~~~~~~I~~~~v~~~l~~~~  251 (328)
T PRK00080        229 FAQVKGDGVITKEIADKALDMLG  251 (328)
T ss_pred             HHHHcCCCCCCHHHHHHHHHHhC
Confidence            2  23456788888888876553

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=98.24  E-value=1.4e-05  Score=66.51  Aligned_cols=93  Identities=12%  Similarity=0.060  Sum_probs=71.7

Q ss_pred             EEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15623         24 IVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTF  102 (133)
Q Consensus        24 v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~  102 (133)
                      .++.+|||.|+.|+|++++|+. .+.++.++.+++.+|++..+++..+. ++..++.|+..+  ++++++.+++..+...
T Consensus       235 rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~  311 (531)
T TIGR02902       235 RLIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGI  311 (531)
T ss_pred             EEEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Confidence            5566677789999999999985 67888889999999999999876544 344466677655  4889998766655543


Q ss_pred             h--cCCCCCCHHHHHHHHH
Q psy15623        103 C--GKNSTPSQPKLLQAER  119 (133)
Q Consensus       103 ~--~~~~~i~~~dl~~a~~  119 (133)
                      +  .++..++.+|+.+.+.
T Consensus       312 A~~~~~~~It~~dI~~vl~  330 (531)
T TIGR02902       312 ALGEGRKRILAEDIEWVAE  330 (531)
T ss_pred             HhhCCCcEEcHHHHHHHhC
Confidence            3  4556799999999975

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.20  E-value=2e-06  Score=57.57  Aligned_cols=46  Identities=33%  Similarity=0.585  Sum_probs=39.8

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHH-hccccEEEcCC
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFL-RRLEKRIYVPL   52 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~-rRfd~~i~i~~   52 (133)
                      +++|+..|+......     .++++|++||.++.+|++++ +||+.+|++|+
T Consensus        86 ~~~L~~~l~~~~~~~-----~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~  132 (132)
T PF00004_consen   86 LNQLLSLLDNPSSKN-----SRVIVIATTNSPDKIDPALLRSRFDRRIEFPL  132 (132)
T ss_dssp             HHHHHHHHHTTTTTS-----SSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred             cceeeeccccccccc-----ccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence            578899999987642     47999999999999999999 89999999975

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.16  E-value=4.2e-05  Score=58.90  Aligned_cols=85  Identities=16%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCC--CC---CCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-Chh
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFP--WN---IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDL   75 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~--~~---lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~   75 (133)
                      .+.|+..|+.-.        .+++||++++..  +.   ++|++.+||+..|+||.++.+++..|++.++++.... ++.
T Consensus       147 ~~~Ll~~le~~~--------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~  218 (284)
T TIGR02880       147 IEILLQVMENQR--------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAE  218 (284)
T ss_pred             HHHHHHHHhcCC--------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHH
Confidence            356778887543        267888887642  32   4899999999999999999999999999999875432 222


Q ss_pred             cHHHHHHHc------CCC-CHHHHHH
Q psy15623         76 DLELVSDQL------EGN-AVQQKVM   94 (133)
Q Consensus        76 ~~~~la~~t------~G~-sgadi~~   94 (133)
                      -+..+.+..      +.+ .++++++
T Consensus       219 a~~~L~~~l~~~~~~~~~GN~R~lrn  244 (284)
T TIGR02880       219 AEEAFADYIALRRTQPHFANARSIRN  244 (284)
T ss_pred             HHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            233343331      333 3677764

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.01  E-value=6.4e-05  Score=60.37  Aligned_cols=110  Identities=13%  Similarity=0.146  Sum_probs=71.2

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCC---CCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWN---IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDL   77 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~---lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~   77 (133)
                      +|+..++.+...+      ..+||++++.|..   +++.+.+||..  .+++++|+.++|..|++..+...+.. ++..+
T Consensus       220 ~l~~~~n~~~~~~------~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l  293 (405)
T TIGR00362       220 EFFHTFNALHENG------KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVL  293 (405)
T ss_pred             HHHHHHHHHHHCC------CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            3555555554332      4566766666665   55788889975  79999999999999999999765444 45558


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHh
Q psy15623         78 ELVSDQLEGNAVQQKVMKSYTK-KTFCGKNSTPSQPKLLQAERP  120 (133)
Q Consensus        78 ~~la~~t~G~sgadi~~~~~~~-~~~~~~~~~i~~~dl~~a~~~  120 (133)
                      ..||++..| +.++|....... .........++.+.+.++++.
T Consensus       294 ~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~  336 (405)
T TIGR00362       294 EFIAKNIRS-NVRELEGALNRLLAYASLTGKPITLELAKEALKD  336 (405)
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            889988875 667775322111 112223344666666666553

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.98  E-value=0.00022  Score=56.63  Aligned_cols=105  Identities=13%  Similarity=0.141  Sum_probs=74.9

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-.        +.+.+|.+|+.++.+.+.+.+|+ ..+++++|+.++..++++..++..+.. ++..+..++
T Consensus       137 naLLk~lEe~~--------~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia  207 (363)
T PRK14961        137 NALLKTLEEPP--------QHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIA  207 (363)
T ss_pred             HHHHHHHhcCC--------CCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            45666666533        26677777888899999999998 578999999999999999988765543 455678889


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      +.+.| +++++.+.+..+...  +...++.+++.+.+.
T Consensus       208 ~~s~G-~~R~al~~l~~~~~~--~~~~It~~~v~~~l~  242 (363)
T PRK14961        208 YHAHG-SMRDALNLLEHAINL--GKGNINIKNVTDMLG  242 (363)
T ss_pred             HHcCC-CHHHHHHHHHHHHHh--cCCCCCHHHHHHHHC
Confidence            88877 677765544333222  355688887776543

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=97.95  E-value=0.00018  Score=56.27  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..++...        +.+++|.+||.++.+.+++.+|+. .+++++|+.++...+++..+++.+.. ++..+..++
T Consensus       135 ~~Ll~~le~~~--------~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~  205 (355)
T TIGR02397       135 NALLKTLEEPP--------EHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIA  205 (355)
T ss_pred             HHHHHHHhCCc--------cceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            45666665533        266778888889999999999985 78999999999999999988765543 345577788


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +++.+...+.......  ...++.+++.+.
T Consensus       206 ~~~~g-~~~~a~~~lekl~~~~--~~~it~~~v~~~  238 (355)
T TIGR02397       206 RAADG-SLRDALSLLDQLISFG--NGNITYEDVNEL  238 (355)
T ss_pred             HHcCC-ChHHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence            88876 5555543222222222  234777666554

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.94  E-value=0.00027  Score=58.65  Aligned_cols=106  Identities=18%  Similarity=0.149  Sum_probs=77.3

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-.        +.+++|.+|+.++.+++++.+|+ ..+++..++.++...+++..+++.+.. ++..+..|+
T Consensus       146 naLLk~LEepp--------~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia  216 (507)
T PRK06645        146 NALLKTLEEPP--------PHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA  216 (507)
T ss_pred             HHHHHHHhhcC--------CCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            45666666432        36788888888999999999999 579999999999999999999776544 344578899


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCG-KNSTPSQPKLLQAE  118 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~-~~~~i~~~dl~~a~  118 (133)
                      +.++| +.+++.+....+..... ....++.+++.+.+
T Consensus       217 ~~s~G-slR~al~~Ldkai~~~~~~~~~It~~~V~~ll  253 (507)
T PRK06645        217 YKSEG-SARDAVSILDQAASMSAKSDNIISPQVINQML  253 (507)
T ss_pred             HHcCC-CHHHHHHHHHHHHHhhccCCCCcCHHHHHHHH
Confidence            99887 88888764443333333 33467777776654

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.93  E-value=5.7e-05  Score=65.32  Aligned_cols=50  Identities=18%  Similarity=0.340  Sum_probs=42.9

Q ss_pred             CcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC
Q psy15623         22 KSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA   72 (133)
Q Consensus        22 ~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~   72 (133)
                      +.+.+|||||.++     ..|+|+.|||+ .|+++.|+.+++..||+.+..++...
T Consensus       314 g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~  368 (758)
T PRK11034        314 GKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAH  368 (758)
T ss_pred             CCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhc
Confidence            3799999999865     58999999996 79999999999999999887654433

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.90  E-value=9.6e-05  Score=60.21  Aligned_cols=111  Identities=12%  Similarity=0.148  Sum_probs=73.0

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCC---CCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWN---IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDL   77 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~---lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~   77 (133)
                      +|+..++.+...+      ..++|+++..|..   +++.+.+||..  .++++.|+.++|..|++..+...+.. ++.-+
T Consensus       232 ~l~~~~n~l~~~~------~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l  305 (450)
T PRK00149        232 EFFHTFNALHEAG------KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVL  305 (450)
T ss_pred             HHHHHHHHHHHCC------CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            4555555554432      4466666666655   77898889974  89999999999999999999764433 34458


Q ss_pred             HHHHHHcCCCCHHHHHHHH-HHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623         78 ELVSDQLEGNAVQQKVMKS-YTKKTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        78 ~~la~~t~G~sgadi~~~~-~~~~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      +.||+.+.| +.++|.... ............++.+.+.++++..
T Consensus       306 ~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~  349 (450)
T PRK00149        306 EFIAKNITS-NVRELEGALNRLIAYASLTGKPITLELAKEALKDL  349 (450)
T ss_pred             HHHHcCcCC-CHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence            888988875 666665322 2222222233457777777776654

>TIGR00763 lon ATP-dependent protease La

Probab=97.88  E-value=5.3e-05  Score=65.66  Aligned_cols=71  Identities=18%  Similarity=0.185  Sum_probs=53.1

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh-----cCCCC------ChhcHHHHHHH-cCCCCH
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR-----QVDLA------SDLDLELVSDQ-LEGNAV   89 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~-----~~~~~------~~~~~~~la~~-t~G~sg   89 (133)
                      .++++|+|||.++.||+++++||+ .|+|+.|+.+++.+|++.++.     ...+.      ++..+..|++. |..+..
T Consensus       462 s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~  540 (775)
T TIGR00763       462 SKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGV  540 (775)
T ss_pred             CCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCC
Confidence            378999999999999999999996 799999999999999998872     11221      23345556653 344566


Q ss_pred             HHHH
Q psy15623         90 QQKV   93 (133)
Q Consensus        90 adi~   93 (133)
                      ++|.
T Consensus       541 R~l~  544 (775)
T TIGR00763       541 RNLE  544 (775)
T ss_pred             hHHH
Confidence            6764

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.87  E-value=0.00038  Score=57.29  Aligned_cols=105  Identities=11%  Similarity=0.086  Sum_probs=72.1

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+...        +.+++|++|+.|..+++++.+|+. .++|.+|+.++...+++..+...+.. ++..+..|+
T Consensus       135 ~~LLk~LE~p~--------~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia  205 (472)
T PRK14962        135 NALLKTLEEPP--------SHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIA  205 (472)
T ss_pred             HHHHHHHHhCC--------CcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            34566666433        267777788888999999999995 89999999999999999988654433 345578899


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      +.+.| +.+++.+......... + ..++.+++.+++.
T Consensus       206 ~~s~G-dlR~aln~Le~l~~~~-~-~~It~e~V~~~l~  240 (472)
T PRK14962        206 KRASG-GLRDALTMLEQVWKFS-E-GKITLETVHEALG  240 (472)
T ss_pred             HHhCC-CHHHHHHHHHHHHHhc-C-CCCCHHHHHHHHc
Confidence            88765 5555543332222222 2 2488888877654

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.80  E-value=0.0006  Score=53.57  Aligned_cols=100  Identities=15%  Similarity=0.102  Sum_probs=67.3

Q ss_pred             CcEEEEEeeCCCC---CCCHHHHhccc-cEEEcCCCCHHHHHHHHHHHHhc-C---CCCChhcHH---HHHHHcCCCCHH
Q psy15623         22 KSIVILGASNFPW---NIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQ-V---DLASDLDLE---LVSDQLEGNAVQ   90 (133)
Q Consensus        22 ~~v~vi~aTn~~~---~lD~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~-~---~~~~~~~~~---~la~~t~G~sga   90 (133)
                      .++.+|++||.++   .+++.+.+||. ..++|++++.++..+|++..++. .   .++ +.-++   .++..+.|....
T Consensus       164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~-~~~l~~i~~~~~~~~Gd~R~  242 (365)
T TIGR02928       164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD-DGVIPLCAALAAQEHGDARK  242 (365)
T ss_pred             CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHHhcCCHHH
Confidence            4799999999986   58889988886 78999999999999999998863 1   122 22223   344444554333


Q ss_pred             HHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhh
Q psy15623         91 QKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRR  123 (133)
Q Consensus        91 di~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~  123 (133)
                      -+. .+..+..  ...+...++.+|+..|......
T Consensus       243 al~-~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~  276 (365)
T TIGR02928       243 AID-LLRVAGEIAEREGAERVTEDHVEKAQEKIEK  276 (365)
T ss_pred             HHH-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            322 3333322  3345678999999998775543

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.78  E-value=0.00046  Score=54.79  Aligned_cols=100  Identities=13%  Similarity=0.064  Sum_probs=69.5

Q ss_pred             cEEEEEeeCCCC---CCCHHHHhccc-cEEEcCCCCHHHHHHHHHHHHhcC---CCCChhcHHHHHHHcCCCCHHHHH--
Q psy15623         23 SIVILGASNFPW---NIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQLEGNAVQQKV--   93 (133)
Q Consensus        23 ~v~vi~aTn~~~---~lD~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~~---~~~~~~~~~~la~~t~G~sgadi~--   93 (133)
                      ++.+|+++|.++   .+++.+.+||. ..|+|++++.++..+|++..++..   ..-.+..++.+++.+.+.+| |+.  
T Consensus       173 ~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G-d~r~a  251 (394)
T PRK00411        173 RIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG-DARVA  251 (394)
T ss_pred             eEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC-cHHHH
Confidence            788999988764   57888888774 678999999999999999888542   11133446778888855333 443  


Q ss_pred             -HHHHHHH--HHhcCCCCCCHHHHHHHHHhhhh
Q psy15623         94 -MKSYTKK--TFCGKNSTPSQPKLLQAERPFRR  123 (133)
Q Consensus        94 -~~~~~~~--~~~~~~~~i~~~dl~~a~~~~~~  123 (133)
                       .++..+.  +...+...++.+|+..|+.....
T Consensus       252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~  284 (394)
T PRK00411        252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI  284 (394)
T ss_pred             HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence             3333332  23355678999999999886644

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=97.76  E-value=0.00073  Score=56.73  Aligned_cols=102  Identities=20%  Similarity=0.256  Sum_probs=71.4

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+.-.        ..+++|.+|+.|+.|++.+++|+. .++|..|+.++-...++..+++.++. ++..+..++
T Consensus       137 naLLKtLEepp--------~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia  207 (559)
T PRK05563        137 NALLKTLEEPP--------AHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIA  207 (559)
T ss_pred             HHHHHHhcCCC--------CCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            45666666443        266777778889999999999986 58899999999999999988765543 345578889


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ  116 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~  116 (133)
                      +.+.| +.++............  ...++.+++..
T Consensus       208 ~~s~G-~~R~al~~Ldq~~~~~--~~~It~~~V~~  239 (559)
T PRK05563        208 RAAEG-GMRDALSILDQAISFG--DGKVTYEDALE  239 (559)
T ss_pred             HHcCC-CHHHHHHHHHHHHHhc--cCCCCHHHHHH
Confidence            88887 7777765433222222  34566665544

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.76  E-value=0.0002  Score=61.80  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=68.4

Q ss_pred             CcEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCC-ChhcHHHHHHHcCCCCHHH
Q psy15623         22 KSIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQLEGNAVQQ   91 (133)
Q Consensus        22 ~~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~-~~~~~~~la~~t~G~sgad   91 (133)
                      +.+.+|||||.+     ..+|+|+.|||. .|+++.|+.+++.+||+.....    ..+. .+..+..++..+..|-+..
T Consensus       310 g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r  388 (731)
T TIGR02639       310 GKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDR  388 (731)
T ss_pred             CCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccc
Confidence            479999999973     368999999997 7999999999999999977754    2222 4556788888887776553


Q ss_pred             H------HHH---HHHHHHHh--cCCCCCCHHHHHHHHHhhh
Q psy15623         92 K------VMK---SYTKKTFC--GKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        92 i------~~~---~~~~~~~~--~~~~~i~~~dl~~a~~~~~  122 (133)
                      .      ..+   ++..+...  .....++.+|+...+..+-
T Consensus       389 ~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t  430 (731)
T TIGR02639       389 FLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA  430 (731)
T ss_pred             cCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence            2      111   11111111  1234588888888876543

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.75  E-value=0.0002  Score=62.71  Aligned_cols=68  Identities=15%  Similarity=0.159  Sum_probs=53.9

Q ss_pred             CcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC----CC-ChhcHHHHHHHcCCCCHH
Q psy15623         22 KSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD----LA-SDLDLELVSDQLEGNAVQ   90 (133)
Q Consensus        22 ~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~----~~-~~~~~~~la~~t~G~sga   90 (133)
                      +.+.+||||+..+     .+|+|+.|||. .|+++.|+.+++..||+.+.+...    +. .+..+..+++.+.+|-+.
T Consensus       315 G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~  392 (852)
T TIGR03345       315 GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPG  392 (852)
T ss_pred             CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccccc
Confidence            3799999999743     49999999996 899999999999999877765432    22 466688888988877543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK06893 DNA replication initiation factor; Validated

Probab=97.74  E-value=0.00057  Score=50.92  Aligned_cols=95  Identities=12%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             cEEEEEeeCCCCCCC---HHHHhcc--ccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHH-H
Q psy15623         23 SIVILGASNFPWNID---DAFLRRL--EKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVM-K   95 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD---~al~rRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~-~   95 (133)
                      .+++++++..|..++   |.+.+|+  ...++++.|+.++|.+|++.......+. ++.-+..|+++.+| +.+.+.. +
T Consensus       126 ~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l  204 (229)
T PRK06893        126 TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDAL  204 (229)
T ss_pred             cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHH
Confidence            456677777788776   8888854  5799999999999999999888543333 34457889998885 5555543 2


Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHH
Q psy15623         96 SYTKKTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        96 ~~~~~~~~~~~~~i~~~dl~~a~  118 (133)
                      ...........+.+|.+.+.+.+
T Consensus       205 ~~l~~~~~~~~~~it~~~v~~~L  227 (229)
T PRK06893        205 DLLDKASLQAQRKLTIPFVKEIL  227 (229)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHh
Confidence            22222222333468877776654

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.73  E-value=0.00022  Score=53.98  Aligned_cols=61  Identities=13%  Similarity=0.147  Sum_probs=46.3

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCC
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDL   71 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~   71 (133)
                      +.|+..|+....        ++++|++++..+     .++|++.+||+.+++||.++.+++.+|++.++.....
T Consensus       131 ~~Ll~~~e~~~~--------~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~  196 (261)
T TIGR02881       131 DTLVKGMEDNRN--------EFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREY  196 (261)
T ss_pred             HHHHHHHhccCC--------CEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCC
Confidence            557777776532        556666654322     3789999999999999999999999999999976543

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK09087 hypothetical protein; Validated

Probab=97.68  E-value=0.00047  Score=51.46  Aligned_cols=110  Identities=7%  Similarity=0.087  Sum_probs=71.9

Q ss_pred             HHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCC---CHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHH
Q psy15623          5 LLCHMDGIASTTNADPTKSIVILGASNFPWNI---DDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLE   78 (133)
Q Consensus         5 lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~l---D~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~   78 (133)
                      |...++.+...+      +.+||+++..|..+   .+.+.+||.  ..+++..|+.+.|.++++..+....+. ++.-++
T Consensus       106 lf~l~n~~~~~g------~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~  179 (226)
T PRK09087        106 LFHLINSVRQAG------TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVY  179 (226)
T ss_pred             HHHHHHHHHhCC------CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            444444444433      56777776655533   677888987  889999999999999999999765443 455578


Q ss_pred             HHHHHcCCCCHHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623         79 LVSDQLEGNAVQQKVM-KSYTKKTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        79 ~la~~t~G~sgadi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      .|+++..| +.+.+.. +...........+.++..-+.+.++.+
T Consensus       180 ~La~~~~r-~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~  222 (226)
T PRK09087        180 YLVSRMER-SLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM  222 (226)
T ss_pred             HHHHHhhh-hHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence            89998874 3333332 222222232344568988888887755

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.67  E-value=0.00066  Score=52.58  Aligned_cols=90  Identities=14%  Similarity=0.154  Sum_probs=62.2

Q ss_pred             EEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q psy15623         25 VILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTFC  103 (133)
Q Consensus        25 ~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~~  103 (133)
                      .+|.+|+.+..+.+.+.+|+ ..+++++|+.++...+++..+++.+.. ++..+..|++.+.| +.+++....   ...+
T Consensus       157 ~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-dlr~l~~~l---~~~~  231 (337)
T PRK12402        157 RFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-DLRKAILTL---QTAA  231 (337)
T ss_pred             eEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH---HHHH
Confidence            45556666778888888887 578999999999999999988765544 45567888888743 445543322   2233


Q ss_pred             cCCCCCCHHHHHHHHH
Q psy15623        104 GKNSTPSQPKLLQAER  119 (133)
Q Consensus       104 ~~~~~i~~~dl~~a~~  119 (133)
                      .....++.+++.+.+.
T Consensus       232 ~~~~~It~~~v~~~~~  247 (337)
T PRK12402        232 LAAGEITMEAAYEALG  247 (337)
T ss_pred             HcCCCCCHHHHHHHhC
Confidence            3344688888776654

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.62  E-value=0.0016  Score=53.79  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=70.6

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-.        .++++|.+|+.++.|.+++++|+. +++|..++.++-.+.++..+...++. ++..+..||
T Consensus       139 NALLKtLEEPp--------~~viFILaTte~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia  209 (484)
T PRK14956        139 NALLKTLEEPP--------AHIVFILATTEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA  209 (484)
T ss_pred             HHHHHHhhcCC--------CceEEEeecCChhhccHHHHhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            56666665432        378889999999999999999995 58888888888888888888765443 455688899


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.++| +.+|.....-.+....  ...++.+++.+.
T Consensus       210 ~~S~G-d~RdAL~lLeq~i~~~--~~~it~~~V~~~  242 (484)
T PRK14956        210 KKGDG-SVRDMLSFMEQAIVFT--DSKLTGVKIRKM  242 (484)
T ss_pred             HHcCC-hHHHHHHHHHHHHHhC--CCCcCHHHHHHH
Confidence            98887 3555443322222222  234777766543

>PRK08727 hypothetical protein; Validated

Probab=97.55  E-value=0.0012  Score=49.26  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=59.4

Q ss_pred             EEEEeeCCCCCC---CHHHHhcc--ccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHH-HHHH
Q psy15623         25 VILGASNFPWNI---DDAFLRRL--EKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKV-MKSY   97 (133)
Q Consensus        25 ~vi~aTn~~~~l---D~al~rRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~-~~~~   97 (133)
                      +++.+.+.|..+   +|++.+||  -..++++.|+.++|.+|++.......+. ++..+..|+++++| +.+.+. .+..
T Consensus       129 vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~  207 (233)
T PRK08727        129 LLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDR  207 (233)
T ss_pred             EEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            455555567766   79999997  5678899999999999999876543332 34557889999874 222222 2222


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHH
Q psy15623         98 TKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        98 ~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      .........+.+|.+.+.+.+.
T Consensus       208 l~~~~~~~~~~it~~~~~~~l~  229 (233)
T PRK08727        208 LDRESLAAKRRVTVPFLRRVLE  229 (233)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHh
Confidence            2211112234688777776653

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.54  E-value=0.0014  Score=56.77  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+.-..        ++.+|.+||.++.|.+.|++|+ .++.|..++.++-.+.|+..+++.++. ++.-+..|+
T Consensus       137 NALLKtLEEPP~--------~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA  207 (830)
T PRK07003        137 NAMLKTLEEPPP--------HVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLA  207 (830)
T ss_pred             HHHHHHHHhcCC--------CeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            567777775533        7789999999999999999999 679999999999999999988765543 455688899


Q ss_pred             HHcCCCCHHHHHH
Q psy15623         82 DQLEGNAVQQKVM   94 (133)
Q Consensus        82 ~~t~G~sgadi~~   94 (133)
                      +.++|- .+|..+
T Consensus       208 ~~A~Gs-mRdALs  219 (830)
T PRK07003        208 RAAQGS-MRDALS  219 (830)
T ss_pred             HHcCCC-HHHHHH
Confidence            999884 444443

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.54  E-value=0.0022  Score=55.29  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=70.1

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-..        .+++|.+|+.++.|.+.+++|+. +++|.+|+.++....++..+.+.++. .+..+..+|
T Consensus       136 NALLKtLEEPP~--------~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA  206 (725)
T PRK07133        136 NALLKTLEEPPK--------HVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIA  206 (725)
T ss_pred             HHHHHHhhcCCC--------ceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            456666765432        67888888899999999999996 89999999999999999888665544 334477788


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.+++...........  ...++.+++.+.
T Consensus       207 ~lS~G-slR~AlslLekl~~y~--~~~It~e~V~el  239 (725)
T PRK07133        207 KLSSG-SLRDALSIAEQVSIFG--NNKITLKNVEEL  239 (725)
T ss_pred             HHcCC-CHHHHHHHHHHHHHhc--cCCCCHHHHHHH
Confidence            88875 4455543322222222  233666665543

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.54  E-value=0.004  Score=49.27  Aligned_cols=91  Identities=19%  Similarity=0.216  Sum_probs=61.5

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~  101 (133)
                      ..++|.+|+.+..+.+++.+|+. .++++.|+.++...++...+.+.+.. ++..+..|+..+.| +.+.+...+.....
T Consensus       138 ~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~  215 (367)
T PRK14970        138 HAIFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVT  215 (367)
T ss_pred             ceEEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            45666677788999999999885 68999999999999999888765543 45567888887765 55555433222222


Q ss_pred             HhcCCCCCCHHHHHHH
Q psy15623        102 FCGKNSTPSQPKLLQA  117 (133)
Q Consensus       102 ~~~~~~~i~~~dl~~a  117 (133)
                      .+...  ++.+++...
T Consensus       216 y~~~~--it~~~v~~~  229 (367)
T PRK14970        216 FCGKN--ITRQAVTEN  229 (367)
T ss_pred             hcCCC--CCHHHHHHH
Confidence            22222  666555544

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.53  E-value=0.00077  Score=54.99  Aligned_cols=111  Identities=11%  Similarity=0.155  Sum_probs=69.0

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCC---CHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNI---DDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDL   77 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~l---D~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~   77 (133)
                      +|+..++.+...+      ..+|+++.+.|..+   ++.+.+||.  ..+.+++|+.+.|..|++..+...++. ++..+
T Consensus       215 elf~~~n~l~~~~------k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~  288 (440)
T PRK14088        215 ELFHTFNELHDSG------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVL  288 (440)
T ss_pred             HHHHHHHHHHHcC------CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            3555555554433      55666666677764   456666885  577899999999999999998653332 34448


Q ss_pred             HHHHHHcCCCCHHHHHHH-HHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623         78 ELVSDQLEGNAVQQKVMK-SYTKKTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        78 ~~la~~t~G~sgadi~~~-~~~~~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      +.||+...| +.++|... ....+........++.+...+.++.+
T Consensus       289 ~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~  332 (440)
T PRK14088        289 NFVAENVDD-NLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF  332 (440)
T ss_pred             HHHHhcccc-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            889988875 66666532 22222222233446666666665544

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.50  E-value=0.0014  Score=55.90  Aligned_cols=83  Identities=16%  Similarity=0.177  Sum_probs=62.8

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+.-.        .++++|.+||.++.|.+.|++|+ ..+.|..++.++..+.++..+.+.++. ++..+..|+
T Consensus       142 NALLKTLEEPP--------~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA  212 (700)
T PRK12323        142 NAMLKTLEEPP--------EHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA  212 (700)
T ss_pred             HHHHHhhccCC--------CCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            56666666432        37889999999999999999998 779999999999999999888665444 234467788


Q ss_pred             HHcCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMK   95 (133)
Q Consensus        82 ~~t~G~sgadi~~~   95 (133)
                      +.++| +.++...+
T Consensus       213 ~~A~G-s~RdALsL  225 (700)
T PRK12323        213 QAAQG-SMRDALSL  225 (700)
T ss_pred             HHcCC-CHHHHHHH
Confidence            88886 55555443

>PRK06620 hypothetical protein; Validated

Probab=97.49  E-value=0.0019  Score=47.80  Aligned_cols=94  Identities=10%  Similarity=0.035  Sum_probs=63.7

Q ss_pred             cEEEEEeeCCCCC--CCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHH-H
Q psy15623         23 SIVILGASNFPWN--IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMK-S   96 (133)
Q Consensus        23 ~v~vi~aTn~~~~--lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~-~   96 (133)
                      +.++|+++..|..  + |++.+|+..  .+++..|+.+.+..+++......++. ++.-++.|+++.+| +.+.+... .
T Consensus       114 ~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~  191 (214)
T PRK06620        114 KYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILE  191 (214)
T ss_pred             CEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHH
Confidence            6788888877765  5 788889874  58999999999999999888654332 34457889988875 55666432 2


Q ss_pred             HHHHHHhcCCCCCCHHHHHHHH
Q psy15623         97 YTKKTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        97 ~~~~~~~~~~~~i~~~dl~~a~  118 (133)
                      ..........+.+|.+.+.+.+
T Consensus       192 ~l~~~~~~~~~~it~~~~~~~l  213 (214)
T PRK06620        192 NINYFALISKRKITISLVKEVL  213 (214)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHh
Confidence            2222222344568877776654

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.47  E-value=0.0022  Score=54.26  Aligned_cols=102  Identities=19%  Similarity=0.200  Sum_probs=69.9

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-..        .+++|.+|+.++.|.+.+++|+. .++|+.|+.++....++..+.+.+.. ++..+..++
T Consensus       137 NaLLKtLEEPp~--------~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La  207 (605)
T PRK05896        137 NALLKTLEEPPK--------HVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA  207 (605)
T ss_pred             HHHHHHHHhCCC--------cEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            456666665433        67788888889999999999986 69999999999999999888665432 345578888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ  116 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~  116 (133)
                      +.+.| +.+++...........+  ..++.+++.+
T Consensus       208 ~lS~G-dlR~AlnlLekL~~y~~--~~It~e~V~e  239 (605)
T PRK05896        208 DLADG-SLRDGLSILDQLSTFKN--SEIDIEDINK  239 (605)
T ss_pred             HHcCC-cHHHHHHHHHHHHhhcC--CCCCHHHHHH
Confidence            88876 55655443332222222  2266655544

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.45  E-value=0.003  Score=52.34  Aligned_cols=103  Identities=14%  Similarity=0.172  Sum_probs=74.5

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+.-..        .+++|.+|+.++.|.+.+.+|+ ..++|..++.++....++..+++.+.. ++..+..|+
T Consensus       134 NaLLK~LEePp~--------~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa  204 (491)
T PRK14964        134 NALLKTLEEPAP--------HVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIA  204 (491)
T ss_pred             HHHHHHHhCCCC--------CeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            556666665433        6778888888999999999998 458999999999999999988765544 455688899


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.++| +.+++......+.....  ..++.+++.+.
T Consensus       205 ~~s~G-slR~alslLdqli~y~~--~~It~e~V~~l  237 (491)
T PRK14964        205 ENSSG-SMRNALFLLEQAAIYSN--NKISEKSVRDL  237 (491)
T ss_pred             HHcCC-CHHHHHHHHHHHHHhcC--CCCCHHHHHHH
Confidence            99976 77777654333333322  36787777654

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.45  E-value=0.0034  Score=51.93  Aligned_cols=103  Identities=15%  Similarity=0.194  Sum_probs=69.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-..        .+++|.+|+.++.+.+++.+|+. .+.|++|+.++...+++..++..++. ++..+..|+
T Consensus       137 naLLk~LEepp~--------~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La  207 (486)
T PRK14953        137 NALLKTLEEPPP--------RTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA  207 (486)
T ss_pred             HHHHHHHhcCCC--------CeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            456666664432        55666677778999999999986 69999999999999999998776544 344577788


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.+++......+...  +...++.+++.+.
T Consensus       208 ~~s~G-~lr~al~~Ldkl~~~--~~~~It~~~V~~~  240 (486)
T PRK14953        208 QASEG-GMRDAASLLDQASTY--GEGKVTIKVVEEF  240 (486)
T ss_pred             HHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHH
Confidence            88775 445554332222222  2445776666654

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.44  E-value=0.00076  Score=54.38  Aligned_cols=78  Identities=14%  Similarity=0.120  Sum_probs=55.9

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..|+.-..        ++++|.+|+.++.|.|.+++|+ ..++|++|+.++..+++..   +.+.+ ......++.
T Consensus       135 naLLk~LEep~~--------~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~~-~~~a~~la~  201 (394)
T PRK07940        135 NALLKAVEEPPP--------RTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGVD-PETARRAAR  201 (394)
T ss_pred             HHHHHHhhcCCC--------CCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCCC-HHHHHHHHH
Confidence            567777765432        3444445555999999999998 5899999999988777763   22333 445778899


Q ss_pred             HcCCCCHHHHH
Q psy15623         83 QLEGNAVQQKV   93 (133)
Q Consensus        83 ~t~G~sgadi~   93 (133)
                      .+.|..+..+.
T Consensus       202 ~s~G~~~~A~~  212 (394)
T PRK07940        202 ASQGHIGRARR  212 (394)
T ss_pred             HcCCCHHHHHH
Confidence            99998886653

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.41  E-value=0.0026  Score=47.60  Aligned_cols=94  Identities=11%  Similarity=0.047  Sum_probs=63.4

Q ss_pred             EEEEEeeCCCCC---CCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHH
Q psy15623         24 IVILGASNFPWN---IDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSY   97 (133)
Q Consensus        24 v~vi~aTn~~~~---lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~   97 (133)
                      -+++.+++.|..   +.|.+.+|+.  ..++++.|+.++|.++++......++. ++.-++.|+++.+| +.+.+.....
T Consensus       133 ~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~  211 (235)
T PRK08084        133 RLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLD  211 (235)
T ss_pred             eEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHH
Confidence            355666666666   6899999997  889999999999999999866543333 34457889999885 5666654322


Q ss_pred             HHH-HHhcCCCCCCHHHHHHHH
Q psy15623         98 TKK-TFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        98 ~~~-~~~~~~~~i~~~dl~~a~  118 (133)
                      ... ......+.+|.+-+.+.+
T Consensus       212 ~l~~~~l~~~~~it~~~~k~~l  233 (235)
T PRK08084        212 QLDRASITAQRKLTIPFVKEIL  233 (235)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHH
Confidence            222 222334558877776654

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.39  E-value=0.0028  Score=51.88  Aligned_cols=98  Identities=9%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             cEEEEEeeCCCC---CCCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHH-H
Q psy15623         23 SIVILGASNFPW---NIDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVM-K   95 (133)
Q Consensus        23 ~v~vi~aTn~~~---~lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~-~   95 (133)
                      ..+++++++.|.   .+++.+.+||.  ..+.+++|+.+.|..|++..+...++. ++.-++.||....| +.++|.. +
T Consensus       236 k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l  314 (445)
T PRK12422        236 KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHAL  314 (445)
T ss_pred             CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence            445555555554   46789999997  788889999999999999998765543 34446668887764 5555543 2


Q ss_pred             HHH---HHHHhcCCCCCCHHHHHHHHHhh
Q psy15623         96 SYT---KKTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        96 ~~~---~~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      ...   .+........++.+...+.++.+
T Consensus       315 ~~l~~~~a~~~~~~~~i~~~~~~~~l~~~  343 (445)
T PRK12422        315 TLLAKRVAYKKLSHQLLYVDDIKALLHDV  343 (445)
T ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence            222   12222233557887777777654

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.39  E-value=0.0034  Score=48.14  Aligned_cols=92  Identities=14%  Similarity=0.131  Sum_probs=63.5

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~  101 (133)
                      ...+|.++|.+..+.+++.+|+. .+++++|+.++...+++.++++.++. ++..+..+++.+.| +.+.+.+...   .
T Consensus       132 ~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~---~  206 (319)
T PRK00440        132 NTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQ---A  206 (319)
T ss_pred             CCeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH---H
Confidence            34566677888888888888987 58999999999999999999765543 45568888888765 3444332222   1


Q ss_pred             HhcCCCCCCHHHHHHHHH
Q psy15623        102 FCGKNSTPSQPKLLQAER  119 (133)
Q Consensus       102 ~~~~~~~i~~~dl~~a~~  119 (133)
                      .+.....++.+++..+..
T Consensus       207 ~~~~~~~it~~~v~~~~~  224 (319)
T PRK00440        207 AAATGKEVTEEAVYKITG  224 (319)
T ss_pred             HHHcCCCCCHHHHHHHhC
Confidence            222235678777776643

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.37  E-value=0.0026  Score=52.95  Aligned_cols=105  Identities=11%  Similarity=0.113  Sum_probs=73.7

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+....        .+.+|.+|+.++.+.+.+++|+ ..++|..++.++-...++..+++.+.. ++..+..|+
T Consensus       137 naLLk~LEepp~--------~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia  207 (509)
T PRK14958        137 NALLKTLEEPPS--------HVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLA  207 (509)
T ss_pred             HHHHHHHhccCC--------CeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            556666765433        6777888888999999988898 667888888888888888888765544 345578888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      +.+.| +.+++.+.+..+...  +...++.+++.+.+.
T Consensus       208 ~~s~G-slR~al~lLdq~ia~--~~~~It~~~V~~~lg  242 (509)
T PRK14958        208 RAANG-SVRDALSLLDQSIAY--GNGKVLIADVKTMLG  242 (509)
T ss_pred             HHcCC-cHHHHHHHHHHHHhc--CCCCcCHHHHHHHHC
Confidence            88876 777776654333222  345677777766543

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.37  E-value=0.0046  Score=52.95  Aligned_cols=103  Identities=11%  Similarity=0.136  Sum_probs=73.7

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-..        .+.+|.+|+.++.+.+.+++|+ .+++|..++.++-...++..+.+.+.. ++..+..|+
T Consensus       136 NALLKtLEEPP~--------~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA  206 (702)
T PRK14960        136 NALLKTLEEPPE--------HVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIA  206 (702)
T ss_pred             HHHHHHHhcCCC--------CcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            456666665432        6678888888999999999999 579999999999999999888765544 455678899


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.+++.+.+-.+...  +...++.+++...
T Consensus       207 ~~S~G-dLRdALnLLDQaIay--g~g~IT~edV~~l  239 (702)
T PRK14960        207 ESAQG-SLRDALSLTDQAIAY--GQGAVHHQDVKEM  239 (702)
T ss_pred             HHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHH
Confidence            88877 777776543222222  3456777776654

>PRK04195 replication factor C large subunit; Provisional

Probab=97.37  E-value=0.0039  Score=51.37  Aligned_cols=90  Identities=14%  Similarity=0.073  Sum_probs=64.0

Q ss_pred             EEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15623         24 IVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTF  102 (133)
Q Consensus        24 v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~  102 (133)
                      ..+|.++|.++.+++.-+|+....|+|+.|+.++...+++..+...++. ++..+..|++.+.|    ||..........
T Consensus       131 ~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~  206 (482)
T PRK04195        131 QPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAI  206 (482)
T ss_pred             CCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH
Confidence            3466678999999885556555689999999999999999998665443 35568889988765    665433333335


Q ss_pred             hcCCCCCCHHHHHHH
Q psy15623        103 CGKNSTPSQPKLLQA  117 (133)
Q Consensus       103 ~~~~~~i~~~dl~~a  117 (133)
                      +.+...++.+++...
T Consensus       207 a~~~~~it~~~v~~~  221 (482)
T PRK04195        207 AEGYGKLTLEDVKTL  221 (482)
T ss_pred             hcCCCCCcHHHHHHh
Confidence            556666777777544

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.35  E-value=0.0053  Score=45.25  Aligned_cols=108  Identities=11%  Similarity=0.059  Sum_probs=67.2

Q ss_pred             HHHHhhCCCCCCCCCCCCcEEEEEeeCC-CC--CCCHHHHhcc--ccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHH
Q psy15623          5 LLCHMDGIASTTNADPTKSIVILGASNF-PW--NIDDAFLRRL--EKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLE   78 (133)
Q Consensus         5 lL~~lD~~~~~~~~~~~~~v~vi~aTn~-~~--~lD~al~rRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~   78 (133)
                      |+..++.....+      ..++|.+++. |.  .+.+.+.+||  ...+++++|+.+++..+++.+..+..+. ++.-+.
T Consensus       110 L~~~~~~~~~~~------~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~  183 (227)
T PRK08903        110 LFNLFNRVRAHG------QGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPD  183 (227)
T ss_pred             HHHHHHHHHHcC------CcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            444555444332      4334444443 32  3567788787  5799999999999999999887654443 344577


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHH-HhcCCCCCCHHHHHHHHH
Q psy15623         79 LVSDQLEGNAVQQKVMKSYTKKT-FCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        79 ~la~~t~G~sgadi~~~~~~~~~-~~~~~~~i~~~dl~~a~~  119 (133)
                      .|++..+| +.+++......... .......++...+.+.+.
T Consensus       184 ~L~~~~~g-n~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~  224 (227)
T PRK08903        184 YLLTHFRR-DMPSLMALLDALDRYSLEQKRPVTLPLLREMLA  224 (227)
T ss_pred             HHHHhccC-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence            78886554 67777654333322 324556788877776653

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.35  E-value=0.005  Score=51.19  Aligned_cols=103  Identities=15%  Similarity=0.137  Sum_probs=70.7

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-.        ..+++|.+||.++.+.+++.+|+. +++|..|+.++-...++..+.+.++. ++..+..|+
T Consensus       134 naLLk~LEep~--------~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia  204 (504)
T PRK14963        134 NALLKTLEEPP--------EHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA  204 (504)
T ss_pred             HHHHHHHHhCC--------CCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            45666666542        266778888999999999999986 79999999999999999988765544 345578888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~  118 (133)
                      +.+.| +.+++.+.+.....   ....++.+++.+.+
T Consensus       205 ~~s~G-dlR~aln~Lekl~~---~~~~It~~~V~~~l  237 (504)
T PRK14963        205 RLADG-AMRDAESLLERLLA---LGTPVTRKQVEEAL  237 (504)
T ss_pred             HHcCC-CHHHHHHHHHHHHh---cCCCCCHHHHHHHH
Confidence            88875 34444332222211   13357777766553

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.33  E-value=0.0068  Score=50.74  Aligned_cols=102  Identities=15%  Similarity=0.231  Sum_probs=71.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+...+        .+.+|.+|+.+..|.+++.+|+ .+++|.+++.++-...++..++..+.. ++..+..|+
T Consensus       135 NALLK~LEEpp~--------~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia  205 (535)
T PRK08451        135 NALLKTLEEPPS--------YVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILA  205 (535)
T ss_pred             HHHHHHHhhcCC--------ceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            556777776533        5677777788999999999996 589999999999888888888765443 455678888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ  116 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~  116 (133)
                      +.+.| +.+++...+..+...+  ...++.+++.+
T Consensus       206 ~~s~G-dlR~alnlLdqai~~~--~~~It~~~V~~  237 (535)
T PRK08451        206 RSGNG-SLRDTLTLLDQAIIYC--KNAITESKVAD  237 (535)
T ss_pred             HHcCC-cHHHHHHHHHHHHHhc--CCCCCHHHHHH
Confidence            88876 7777765443322222  23456555543

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.33  E-value=0.0063  Score=51.76  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=71.6

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+.-.        ..+.+|.+|+.++.+.+.+++|+ ..++|..++.++....++..+.+.++. ++..+..|+
T Consensus       142 NaLLKtLEEPP--------~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La  212 (618)
T PRK14951        142 NAMLKTLEEPP--------EYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA  212 (618)
T ss_pred             HHHHHhcccCC--------CCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            44565555432        36677778888999999988898 789999999999999999888765544 344578899


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.+++.+.+......  +...++.+++.+.
T Consensus       213 ~~s~G-slR~al~lLdq~ia~--~~~~It~~~V~~~  245 (618)
T PRK14951        213 RAARG-SMRDALSLTDQAIAF--GSGQLQEAAVRQM  245 (618)
T ss_pred             HHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHH
Confidence            98887 777776543222222  3445776665544

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.31  E-value=0.0054  Score=51.66  Aligned_cols=103  Identities=15%  Similarity=0.128  Sum_probs=70.6

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-.        ..+++|.+|+.++.|.+++.+|+. .++|.+|+.++...+++..+...+.. ++..+..|+
T Consensus       137 naLLK~LEepp--------~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa  207 (563)
T PRK06647        137 NALLKTIEEPP--------PYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIA  207 (563)
T ss_pred             HHHHHhhccCC--------CCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            45666666432        367777888889999999999987 58999999999999999888655443 455678888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.+++............  ..++.+++.+.
T Consensus       208 ~~s~G-dlR~alslLdklis~~~--~~It~e~V~~l  240 (563)
T PRK06647        208 YKSTG-SVRDAYTLFDQVVSFSD--SDITLEQIRSK  240 (563)
T ss_pred             HHcCC-CHHHHHHHHHHHHhhcC--CCCCHHHHHHH
Confidence            88887 66666543322222222  34666655543

>PLN03025 replication factor C subunit; Provisional

Probab=97.29  E-value=0.0053  Score=47.84  Aligned_cols=88  Identities=13%  Similarity=0.016  Sum_probs=59.9

Q ss_pred             EEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15623         24 IVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTF  102 (133)
Q Consensus        24 v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~  102 (133)
                      ..+|.+||.++.+.+++.+|+ ..++|+.|+.++....++..+++.++. ++..+..+++.+.| +.+.+.+....   .
T Consensus       130 t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~---~  204 (319)
T PLN03025        130 TRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQA---T  204 (319)
T ss_pred             ceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH---H
Confidence            456678888999999999998 479999999999999999988765443 35567888888765 33333332221   1


Q ss_pred             hcCCCCCCHHHHHH
Q psy15623        103 CGKNSTPSQPKLLQ  116 (133)
Q Consensus       103 ~~~~~~i~~~dl~~  116 (133)
                      ..+...++.+++.+
T Consensus       205 ~~~~~~i~~~~v~~  218 (319)
T PLN03025        205 HSGFGFVNQENVFK  218 (319)
T ss_pred             HhcCCCCCHHHHHH
Confidence            11233566655543

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.29  E-value=0.00053  Score=60.22  Aligned_cols=67  Identities=19%  Similarity=0.291  Sum_probs=50.7

Q ss_pred             CCcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCC----C-ChhcHHHHHHHcCCCC
Q psy15623         21 TKSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDL----A-SDLDLELVSDQLEGNA   88 (133)
Q Consensus        21 ~~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~----~-~~~~~~~la~~t~G~s   88 (133)
                      ++.+.+||||+..+     .+|+|+.|||+ .|.++.|+.+++..|++.+...+..    . .+..+...+..+.+|.
T Consensus       305 ~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~  381 (857)
T PRK10865        305 RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI  381 (857)
T ss_pred             cCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence            34799999999977     49999999998 5889999999999999988754322    1 3344455556665554

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.28  E-value=0.0037  Score=52.73  Aligned_cols=102  Identities=20%  Similarity=0.270  Sum_probs=71.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+.-..        .+++|.+||.++.|.+.+++|+. .++|..++.++-...+...+++.++. ++..+..|+
T Consensus       137 naLLk~LEepp~--------~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la  207 (576)
T PRK14965        137 NALLKTLEEPPP--------HVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVA  207 (576)
T ss_pred             HHHHHHHHcCCC--------CeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            567777775433        67888888999999999999985 78899999998888888888765543 455678888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ  116 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~  116 (133)
                      +.+.| +.+++.+........+.+  .++.+++..
T Consensus       208 ~~a~G-~lr~al~~Ldqliay~g~--~It~edV~~  239 (576)
T PRK14965        208 RKGDG-SMRDSLSTLDQVLAFCGD--AVGDDDVAE  239 (576)
T ss_pred             HHcCC-CHHHHHHHHHHHHHhccC--CCCHHHHHH
Confidence            88886 556665443322223332  366666543

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.27  E-value=0.0055  Score=44.83  Aligned_cols=95  Identities=9%  Similarity=0.041  Sum_probs=60.0

Q ss_pred             cEEEEEeeCCCCCCC---HHHHhcc--ccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHH
Q psy15623         23 SIVILGASNFPWNID---DAFLRRL--EKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKS   96 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD---~al~rRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~   96 (133)
                      ..+++.++..+..++   +.+.+||  ...+++++|+.+++..+++.+..+.... ++.-+..|++. -+-+.+++....
T Consensus       124 ~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l  202 (226)
T TIGR03420       124 GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALL  202 (226)
T ss_pred             CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHH
Confidence            345555444554443   7788787  4789999999999999999887654433 34447778885 445777776543


Q ss_pred             HHHH-HHhcCCCCCCHHHHHHHH
Q psy15623         97 YTKK-TFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        97 ~~~~-~~~~~~~~i~~~dl~~a~  118 (133)
                      .... +...+...++.+.+.+.+
T Consensus       203 ~~~~~~~~~~~~~i~~~~~~~~~  225 (226)
T TIGR03420       203 DALDRASLAAKRKITIPFVKEVL  225 (226)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHh
Confidence            3222 222344567766665543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=97.25  E-value=0.0052  Score=52.82  Aligned_cols=105  Identities=11%  Similarity=0.131  Sum_probs=74.5

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-.+        .+.+|.+||.++.+.+.+++|+ ..+.|..++.++-...++..+++.++. ++..+..|+
T Consensus       137 NALLKtLEEPp~--------~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia  207 (709)
T PRK08691        137 NAMLKTLEEPPE--------HVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLG  207 (709)
T ss_pred             HHHHHHHHhCCC--------CcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence            567777776433        6788888899999999999988 567888999999999999988766544 345578889


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      +.+.| +.+++.+.+..+...  +...|+.+++...+.
T Consensus       208 ~~A~G-slRdAlnLLDqaia~--g~g~It~e~V~~lLG  242 (709)
T PRK08691        208 RAAAG-SMRDALSLLDQAIAL--GSGKVAENDVRQMIG  242 (709)
T ss_pred             HHhCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHHHc
Confidence            88865 666766544332222  234577776665543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.21  E-value=0.0052  Score=52.16  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=67.5

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCC----CCCCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-Chhc
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFP----WNIDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLD   76 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~----~~lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~   76 (133)
                      +|...++.+...+      +-+|| |||.+    ..+++.|.+||..  .+++..|+.+.|..||+..+....+. ++.-
T Consensus       398 eLF~l~N~l~e~g------k~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eV  470 (617)
T PRK14086        398 EFFHTFNTLHNAN------KQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEV  470 (617)
T ss_pred             HHHHHHHHHHhcC------CCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence            3455555554432      33344 66653    3578899999865  55888999999999999999765444 3445


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHhh
Q psy15623         77 LELVSDQLEGNAVQQKVMKSYTK-KTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        77 ~~~la~~t~G~sgadi~~~~~~~-~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      ++.|+++..+ +.++|....... .........++.+...+.++.+
T Consensus       471 i~yLa~r~~r-nvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~  515 (617)
T PRK14086        471 LEFIASRISR-NIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL  515 (617)
T ss_pred             HHHHHHhccC-CHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence            7888888764 566775322222 1222233446665555555544

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=97.21  E-value=0.01  Score=48.63  Aligned_cols=82  Identities=16%  Similarity=0.173  Sum_probs=60.9

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-..        .+++|.+||.++.|.+++.+|+. .++|..|+.++-...+...+++.+.. ++..+..|+
T Consensus       139 n~LLk~lEep~~--------~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~  209 (451)
T PRK06305        139 NSLLKTLEEPPQ--------HVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA  209 (451)
T ss_pred             HHHHHHhhcCCC--------CceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            456666665332        66777888999999999999996 68999999999999998888765443 345578888


Q ss_pred             HHcCCCCHHHHHH
Q psy15623         82 DQLEGNAVQQKVM   94 (133)
Q Consensus        82 ~~t~G~sgadi~~   94 (133)
                      ..+.| +.+++.+
T Consensus       210 ~~s~g-dlr~a~~  221 (451)
T PRK06305        210 RAAQG-SLRDAES  221 (451)
T ss_pred             HHcCC-CHHHHHH
Confidence            88876 4444443

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=97.19  E-value=0.0081  Score=50.94  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=72.9

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+....        .+++|.+|+.++.+.+.+.+|+. .++|..|+.++-...++..+++.+.. ++..+..|+
T Consensus       150 naLLKtLEePp~--------~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa  220 (598)
T PRK09111        150 NALLKTLEEPPP--------HVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA  220 (598)
T ss_pred             HHHHHHHHhCCC--------CeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            456666665433        56777778888889999888984 79999999999999999988766544 345577888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~  118 (133)
                      +.+.| +.+++.+........  +...|+.+++...+
T Consensus       221 ~~a~G-dlr~al~~Ldkli~~--g~g~It~e~V~~ll  254 (598)
T PRK09111        221 RAAEG-SVRDGLSLLDQAIAH--GAGEVTAEAVRDML  254 (598)
T ss_pred             HHcCC-CHHHHHHHHHHHHhh--cCCCcCHHHHHHHh
Confidence            88876 677765433222222  23467777777654

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.18  E-value=0.0097  Score=52.23  Aligned_cols=82  Identities=17%  Similarity=0.095  Sum_probs=62.3

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+....        .+++|.+|+.++.|-+.|.+|+ .+++|..++.++-..+|+..+++.++. ++..+..|+
T Consensus       138 NaLLK~LEEpP~--------~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa  208 (824)
T PRK07764        138 NALLKIVEEPPE--------HLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVI  208 (824)
T ss_pred             HHHHHHHhCCCC--------CeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            567777776654        6677778888899999998897 578999999999999999988765554 344567788


Q ss_pred             HHcCCCCHHHHHH
Q psy15623         82 DQLEGNAVQQKVM   94 (133)
Q Consensus        82 ~~t~G~sgadi~~   94 (133)
                      +.+.| +.+++.+
T Consensus       209 ~~sgG-dlR~Al~  220 (824)
T PRK07764        209 RAGGG-SVRDSLS  220 (824)
T ss_pred             HHcCC-CHHHHHH
Confidence            88876 6666654

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.18  E-value=0.001  Score=58.37  Aligned_cols=68  Identities=16%  Similarity=0.271  Sum_probs=53.9

Q ss_pred             CcEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-----ChhcHHHHHHHcCCCCHH
Q psy15623         22 KSIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-----SDLDLELVSDQLEGNAVQ   90 (133)
Q Consensus        22 ~~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-----~~~~~~~la~~t~G~sga   90 (133)
                      +.+.+||+|+..     ..+|+|+.|||. .|.++.|+.+++..||+.+...+...     .+..+..++..+.+|-..
T Consensus       301 g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~  378 (852)
T TIGR03346       301 GELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD  378 (852)
T ss_pred             CceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence            479999999987     358999999996 58999999999999999887664432     344567777888777544

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=97.18  E-value=0.0029  Score=55.89  Aligned_cols=103  Identities=12%  Similarity=0.118  Sum_probs=72.7

Q ss_pred             CcEEEEEeeCC---CCCCCHHHHhcccc-EEEcCCCCHHHHHHHHHHHHhcCC-CCChhcHHHHHHHcCCCCHHHHHH--
Q psy15623         22 KSIVILGASNF---PWNIDDAFLRRLEK-RIYVPLPSSSGRQELLRLILRQVD-LASDLDLELVSDQLEGNAVQQKVM--   94 (133)
Q Consensus        22 ~~v~vi~aTn~---~~~lD~al~rRfd~-~i~i~~P~~~~R~~il~~~~~~~~-~~~~~~~~~la~~t~G~sgadi~~--   94 (133)
                      .+|+|||+||.   |..++|.+..||.. .|.|++++.++..+||+.-+.... .-++.-+..+|+... ...+|++.  
T Consensus       901 SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKAL  979 (1164)
T PTZ00112        901 SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKAL  979 (1164)
T ss_pred             CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHH
Confidence            48999999996   67788888888875 488999999999999999887542 123444666777554 33467753  


Q ss_pred             -HHHHHHHHhcCCCCCCHHHHHHHHHhhhhccc
Q psy15623         95 -KSYTKKTFCGKNSTPSQPKLLQAERPFRRSRV  126 (133)
Q Consensus        95 -~~~~~~~~~~~~~~i~~~dl~~a~~~~~~s~~  126 (133)
                       ++..+... .+...++.+|+.+|...+..+++
T Consensus       980 DILRrAgEi-kegskVT~eHVrkAleeiE~srI 1011 (1164)
T PTZ00112        980 QICRKAFEN-KRGQKIVPRDITEATNQLFDSPL 1011 (1164)
T ss_pred             HHHHHHHhh-cCCCccCHHHHHHHHHHHHhhhH
Confidence             33333333 34457999999999877666543

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.15  E-value=0.0031  Score=45.20  Aligned_cols=71  Identities=14%  Similarity=0.121  Sum_probs=53.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      +.||..|+.-..        ..++|.+||.+..|++++.+|+. .+++++|+.++..++++..    +++ +..+..++.
T Consensus       114 ~~Ll~~le~~~~--------~~~~il~~~~~~~l~~~i~sr~~-~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~  179 (188)
T TIGR00678       114 NALLKTLEEPPP--------NTLFILITPSPEKLLPTIRSRCQ-VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLA  179 (188)
T ss_pred             HHHHHHhcCCCC--------CeEEEEEECChHhChHHHHhhcE-EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHH
Confidence            456666765332        55677778888999999999985 8999999999998888776    233 445777777


Q ss_pred             HcCCC
Q psy15623         83 QLEGN   87 (133)
Q Consensus        83 ~t~G~   87 (133)
                      .+.|-
T Consensus       180 ~~~g~  184 (188)
T TIGR00678       180 LAGGS  184 (188)
T ss_pred             HcCCC
Confidence            77763

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.14  E-value=0.0085  Score=46.23  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=37.6

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL   66 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~   66 (133)
                      ++.+|.+||.++.+++++.+||. .+.++.|+.+++..+++.++
T Consensus       131 ~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~  173 (316)
T PHA02544        131 NCSFIITANNKNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMI  173 (316)
T ss_pred             CceEEEEcCChhhchHHHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence            56788899999999999999996 78999999999998877654

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.12  E-value=0.0079  Score=51.19  Aligned_cols=103  Identities=13%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-.        +.+++|.+||.++.+.+.+++|+. .++|+.++.++-..+++..+.+.... ++..+..|+
T Consensus       137 naLLk~LEEP~--------~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA  207 (624)
T PRK14959        137 NALLKTLEEPP--------ARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIA  207 (624)
T ss_pred             HHHHHHhhccC--------CCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            56666666532        267888889999999999988985 68999999999999999888765542 345577888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.+++.......  +..+...++.+++.+.
T Consensus       208 ~~s~G-dlR~Al~lLeql--l~~g~~~It~d~V~~~  240 (624)
T PRK14959        208 RRAAG-SVRDSMSLLGQV--LALGESRLTIDGARGV  240 (624)
T ss_pred             HHcCC-CHHHHHHHHHHH--HHhcCCCcCHHHHHHH
Confidence            87765 333333222111  1233346776665433

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.12  E-value=0.013  Score=50.18  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+.-..        .+.+|.+|+.++.|.+.+++|+ ..++|..++.++-...|+..+...++. ++..+..|+
T Consensus       137 NALLKtLEEPp~--------~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia  207 (647)
T PRK07994        137 NALLKTLEEPPE--------HVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLA  207 (647)
T ss_pred             HHHHHHHHcCCC--------CeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            566676765433        6778888888999999999996 889999999999999999888654443 345578889


Q ss_pred             HHcCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMK   95 (133)
Q Consensus        82 ~~t~G~sgadi~~~   95 (133)
                      +.+.| +.++...+
T Consensus       208 ~~s~G-s~R~Al~l  220 (647)
T PRK07994        208 RAADG-SMRDALSL  220 (647)
T ss_pred             HHcCC-CHHHHHHH
Confidence            88887 44444433

>PRK04132 replication factor C small subunit; Provisional

Probab=97.10  E-value=0.01  Score=52.18  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=59.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.|+..|+...        +++.+|.+||.++.|.+++.+|+ ..+.|++|+.++-...++..+.+.++. ++..+..|+
T Consensus       648 nALLk~lEep~--------~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia  718 (846)
T PRK04132        648 QALRRTMEMFS--------SNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAIL  718 (846)
T ss_pred             HHHHHHhhCCC--------CCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            34555555443        37789999999999999999997 678999999999998888887654443 455688899


Q ss_pred             HHcCCC
Q psy15623         82 DQLEGN   87 (133)
Q Consensus        82 ~~t~G~   87 (133)
                      +.++|=
T Consensus       719 ~~s~GD  724 (846)
T PRK04132        719 YIAEGD  724 (846)
T ss_pred             HHcCCC
Confidence            888873

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=97.07  E-value=0.022  Score=45.06  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=63.6

Q ss_pred             CcEEEEEeeCCCC-CCCHHHHhccccEEEcCCCCH-HHHHHHHHHHHhcCC----C------C-----------------
Q psy15623         22 KSIVILGASNFPW-NIDDAFLRRLEKRIYVPLPSS-SGRQELLRLILRQVD----L------A-----------------   72 (133)
Q Consensus        22 ~~v~vi~aTn~~~-~lD~al~rRfd~~i~i~~P~~-~~R~~il~~~~~~~~----~------~-----------------   72 (133)
                      .++++++++|-.+ .++++++.||...+.++.|.. ++|.+|++.......    +      .                 
T Consensus       170 ~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~  249 (334)
T PRK13407        170 ARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQ  249 (334)
T ss_pred             CCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCC
Confidence            3789999999644 599999999999999998866 999999987532100    0      0                 


Q ss_pred             ---Chhc---HHHHHHHc--CCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         73 ---SDLD---LELVSDQL--EGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        73 ---~~~~---~~~la~~t--~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                         ++.-   +..++..|  +|.-|.-.....+.+.+...++..++.+|+.....
T Consensus       250 V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~  304 (334)
T PRK13407        250 LKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVAT  304 (334)
T ss_pred             cccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHH
Confidence               0111   22233333  23333322334555556668888999999977654

>PRK05642 DNA replication initiation factor; Validated

Probab=97.04  E-value=0.0086  Score=44.77  Aligned_cols=108  Identities=13%  Similarity=0.066  Sum_probs=67.9

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCC---CHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNI---DDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDL   77 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~l---D~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~   77 (133)
                      +|...++.+..++      +.++++++..|..+   .|.+.+||.  ..+.+..|+.++|..+++.......+. ++.-+
T Consensus       118 ~Lf~l~n~~~~~g------~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~  191 (234)
T PRK05642        118 ALFHLFNRLRDSG------RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVG  191 (234)
T ss_pred             HHHHHHHHHHhcC------CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            3555555554433      67788777766544   688888985  667778999999999999655443332 34457


Q ss_pred             HHHHHHcCCCCHHHHHHH-HHHHHHHhcCCCCCCHHHHHHHH
Q psy15623         78 ELVSDQLEGNAVQQKVMK-SYTKKTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        78 ~~la~~t~G~sgadi~~~-~~~~~~~~~~~~~i~~~dl~~a~  118 (133)
                      +.|+++.+| +++.+... ...........+.+|.+-+.+.+
T Consensus       192 ~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~~~it~~~~~~~L  232 (234)
T PRK05642        192 HFILTRGTR-SMSALFDLLERLDQASLQAQRKLTIPFLKETL  232 (234)
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHh
Confidence            888888874 66666543 22222222333557766655543

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.03  E-value=0.018  Score=48.33  Aligned_cols=103  Identities=17%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+....        .+++|.+|+.+..+.+.+++|+ ..++|..++.++-...++..+++.++. ++..+..|+
T Consensus       137 naLLK~LEepp~--------~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia  207 (546)
T PRK14957        137 NALLKTLEEPPE--------YVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA  207 (546)
T ss_pred             HHHHHHHhcCCC--------CceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            456666775433        5677777777999998988899 789999999999888888888765544 455577788


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.+++.+....+...+.  ..++.+++.+.
T Consensus       208 ~~s~G-dlR~alnlLek~i~~~~--~~It~~~V~~~  240 (546)
T PRK14957        208 YHAKG-SLRDALSLLDQAISFCG--GELKQAQIKQM  240 (546)
T ss_pred             HHcCC-CHHHHHHHHHHHHHhcc--CCCCHHHHHHH
Confidence            88864 55665543332222322  34666665553

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.00  E-value=0.026  Score=49.98  Aligned_cols=83  Identities=18%  Similarity=0.195  Sum_probs=61.1

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+.-..        .+.+|.+|+.++.|.+.+++|+ .+++|..++.++-...|+..+...++. .+..+..|+
T Consensus       137 NALLKtLEEPP~--------~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA  207 (944)
T PRK14949        137 NALLKTLEEPPE--------HVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA  207 (944)
T ss_pred             HHHHHHHhccCC--------CeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            566666765433        6777778888999999999998 679999999999998888888654433 344578888


Q ss_pred             HHcCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMK   95 (133)
Q Consensus        82 ~~t~G~sgadi~~~   95 (133)
                      +.+.| +.+++..+
T Consensus       208 ~~S~G-d~R~ALnL  220 (944)
T PRK14949        208 KAANG-SMRDALSL  220 (944)
T ss_pred             HHcCC-CHHHHHHH
Confidence            88887 44454443

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.99  E-value=0.015  Score=47.01  Aligned_cols=91  Identities=18%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             cEEEEEeeC--CCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC-----CCCChhcHHHHHHHcCCCCHHHHHHH
Q psy15623         23 SIVILGASN--FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-----DLASDLDLELVSDQLEGNAVQQKVMK   95 (133)
Q Consensus        23 ~v~vi~aTn--~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~-----~~~~~~~~~~la~~t~G~sgadi~~~   95 (133)
                      .+++|++|+  ....+++++++|+ ..+.+++|+.++...+++..+...     .+ ++..++.+++.+.| .++.+.+.
T Consensus       120 ~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~G-d~R~aln~  196 (413)
T PRK13342        120 TITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANG-DARRALNL  196 (413)
T ss_pred             cEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCC-CHHHHHHH
Confidence            567777653  3458999999999 789999999999999999887542     22 23446778887755 44444332


Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         96 SYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        96 ~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      ...+...   ...++.+++.+.+.
T Consensus       197 Le~~~~~---~~~It~~~v~~~~~  217 (413)
T PRK13342        197 LELAALG---VDSITLELLEEALQ  217 (413)
T ss_pred             HHHHHHc---cCCCCHHHHHHHHh
Confidence            2222222   44678777777654

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=96.94  E-value=0.0094  Score=48.85  Aligned_cols=98  Identities=7%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             cEEEEEeeCCCCC---CCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCC---CChhcHHHHHHHcCCCCHHHHHH
Q psy15623         23 SIVILGASNFPWN---IDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDL---ASDLDLELVSDQLEGNAVQQKVM   94 (133)
Q Consensus        23 ~v~vi~aTn~~~~---lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~---~~~~~~~~la~~t~G~sgadi~~   94 (133)
                      +-+|+.+...|..   +++.+.+||.  -.+.+..|+.++|..|++..++..++   -++.-+..|+..+.| +++.|..
T Consensus       240 k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~g  318 (450)
T PRK14087        240 KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKG  318 (450)
T ss_pred             CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHH
Confidence            3344444444544   4788888986  66777889999999999999976432   234457778888876 6666654


Q ss_pred             HHHHHHHHh-cC--CCCCCHHHHHHHHHhh
Q psy15623         95 KSYTKKTFC-GK--NSTPSQPKLLQAERPF  121 (133)
Q Consensus        95 ~~~~~~~~~-~~--~~~i~~~dl~~a~~~~  121 (133)
                      .+......+ ..  ...++.+.+.++++.+
T Consensus       319 aL~~l~~~a~~~~~~~~it~~~v~~~l~~~  348 (450)
T PRK14087        319 SVSRLNFWSQQNPEEKIITIEIVSDLFRDI  348 (450)
T ss_pred             HHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence            332222222 22  3568888888877755

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.92  E-value=0.024  Score=48.00  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=69.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+....        .+++|.+|+.++.|.+.+.+|+ .+++|..++.++-.+.+...+++.+.. ++..+..++
T Consensus       136 NALLK~LEEpp~--------~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia  206 (584)
T PRK14952        136 NALLKIVEEPPE--------HLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVI  206 (584)
T ss_pred             HHHHHHHhcCCC--------CeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            567777775443        6788888888999999999995 679999999999999999888765543 344456676


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.+++.+.......... ...++.+++...
T Consensus       207 ~~s~G-dlR~aln~Ldql~~~~~-~~~It~~~v~~l  240 (584)
T PRK14952        207 RAGGG-SPRDTLSVLDQLLAGAA-DTHVTYQRALGL  240 (584)
T ss_pred             HHcCC-CHHHHHHHHHHHHhccC-CCCcCHHHHHHH
Confidence            66654 55555443322222222 345665555443

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.88  E-value=0.016  Score=48.45  Aligned_cols=103  Identities=14%  Similarity=0.156  Sum_probs=70.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      |.||..|+.-..        .+++|.+|+.++.+.+.+++|+ ..++|..|+.++-...+...+.+.++. ++..+..|+
T Consensus       137 naLLK~LEepp~--------~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la  207 (527)
T PRK14969        137 NAMLKTLEEPPE--------HVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLA  207 (527)
T ss_pred             HHHHHHHhCCCC--------CEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            556767766432        6778888888999998888898 789999999999998888888655443 344577788


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.++..+.+..+...  +...++.+++...
T Consensus       208 ~~s~G-slr~al~lldqai~~--~~~~I~~~~v~~~  240 (527)
T PRK14969        208 RAAAG-SMRDALSLLDQAIAY--GGGTVNESEVRAM  240 (527)
T ss_pred             HHcCC-CHHHHHHHHHHHHHh--cCCCcCHHHHHHH
Confidence            88775 455555443222222  3445666665544

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.87  E-value=0.018  Score=43.69  Aligned_cols=95  Identities=14%  Similarity=0.147  Sum_probs=60.1

Q ss_pred             CcEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHH---HHc------CCC
Q psy15623         22 KSIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVS---DQL------EGN   87 (133)
Q Consensus        22 ~~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la---~~t------~G~   87 (133)
                      ++..||+|+|..     ..+++|+.+|| ..++++.|+.++-.+|++....   .+ +...+.++   ..+      ...
T Consensus       150 ~~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~~---~~-~~~~~~iv~~~~~~R~~~~~~~~  224 (262)
T TIGR02640       150 PEFRVIFTSNPVEYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKTD---VA-EDSAATIVRLVREFRASGDEITS  224 (262)
T ss_pred             CCCEEEEeeCCccccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhhC---CC-HHHHHHHHHHHHHHHhhCCccCC
Confidence            356799999976     36799999999 6899999999999999998752   22 22222222   222      123


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhh
Q psy15623         88 AVQQKVMKSYTKKTFCGKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        88 sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~~~~  122 (133)
                      +.+........++.. ..+..++.+||.+.+..+-
T Consensus       225 ~~r~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  258 (262)
T TIGR02640       225 GLRASLMIAEVATQQ-DIPVDVDDEDFVDLCIDIL  258 (262)
T ss_pred             cHHHHHHHHHHHHHc-CCCCCCCcHHHHHHHHHHh
Confidence            334433333333333 3456678888887765543

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.85  E-value=0.033  Score=47.48  Aligned_cols=83  Identities=11%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+....        ..++|.+|+.++.|-+++.+|+.. ++|..++.++-...++..+.+.++. ++..+..|+
T Consensus       139 naLLK~LEepp~--------~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La  209 (614)
T PRK14971        139 NAFLKTLEEPPS--------YAIFILATTEKHKILPTILSRCQI-FDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA  209 (614)
T ss_pred             HHHHHHHhCCCC--------CeEEEEEeCCchhchHHHHhhhhe-eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            456667776543        456777777788999999999854 9999999999999998888766554 344578888


Q ss_pred             HHcCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMK   95 (133)
Q Consensus        82 ~~t~G~sgadi~~~   95 (133)
                      ..+.| +.+++...
T Consensus       210 ~~s~g-dlr~al~~  222 (614)
T PRK14971        210 QKADG-GMRDALSI  222 (614)
T ss_pred             HHcCC-CHHHHHHH
Confidence            88865 66666543

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.74  E-value=0.047  Score=46.62  Aligned_cols=105  Identities=12%  Similarity=0.125  Sum_probs=69.7

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-..        .+++|.+|+.++.|-+.+.+|. ..++|..|+.++-...+...+++.+.. ++..+..|+
T Consensus       145 naLLK~LEePp~--------~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La  215 (620)
T PRK14954        145 NAFLKTLEEPPP--------HAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA  215 (620)
T ss_pred             HHHHHHHhCCCC--------CeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            446666665433        4566667777899999998888 589999999999888888877654432 455678888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHh---cCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFC---GKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~---~~~~~i~~~dl~~a  117 (133)
                      +.+.| +.+++.+.........   .....|+.+++.+.
T Consensus       216 ~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~l  253 (620)
T PRK14954        216 RKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAEL  253 (620)
T ss_pred             HHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHH
Confidence            88876 5555544322222332   33456777666554

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=96.72  E-value=0.031  Score=44.27  Aligned_cols=100  Identities=10%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             CcEEEEEeeCCCC-CCCHHHHhccccEEEcCCCCH-HHHHHHHHHHHhc-------------------------------
Q psy15623         22 KSIVILGASNFPW-NIDDAFLRRLEKRIYVPLPSS-SGRQELLRLILRQ-------------------------------   68 (133)
Q Consensus        22 ~~v~vi~aTn~~~-~lD~al~rRfd~~i~i~~P~~-~~R~~il~~~~~~-------------------------------   68 (133)
                      .++++|+++|-.+ .+.++++.||..++.++.|+. ++|.+|++.....                               
T Consensus       173 ~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~  252 (337)
T TIGR02030       173 ARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQ  252 (337)
T ss_pred             CCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhcc
Confidence            4789999998654 699999999999999999975 8999999874321                               


Q ss_pred             CCCCChh--cHHHHHHHcCCCC-HHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623         69 VDLASDL--DLELVSDQLEGNA-VQQKVM-KSYTKKTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        69 ~~~~~~~--~~~~la~~t~G~s-gadi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      ..+++++  -+..++..+..-| =++|.. ..+.+.+...++..++.+|+..+..-.
T Consensus       253 V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v  309 (337)
T TIGR02030       253 VTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA  309 (337)
T ss_pred             CcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            0111110  1233444444323 244433 455555566888899999999886633

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.69  E-value=0.053  Score=45.88  Aligned_cols=102  Identities=15%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-..        .+++|.+|+.++.+.+.+.+|+. +++|..++..+...+++..+...+.. ++..+..|+
T Consensus       138 naLLk~LEepp~--------~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La  208 (585)
T PRK14950        138 NALLKTLEEPPP--------HAIFILATTEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA  208 (585)
T ss_pred             HHHHHHHhcCCC--------CeEEEEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            456666665433        55666777778888888888886 58899999999999998888665443 344578888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ  116 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~  116 (133)
                      +.+.| +.+++..........  ....++.+++..
T Consensus       209 ~~s~G-dlr~al~~LekL~~y--~~~~It~e~V~~  240 (585)
T PRK14950        209 RAATG-SMRDAENLLQQLATT--YGGEISLSQVQS  240 (585)
T ss_pred             HHcCC-CHHHHHHHHHHHHHh--cCCCCCHHHHHH
Confidence            88887 777765433222222  234577766554

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.63  E-value=0.024  Score=45.58  Aligned_cols=106  Identities=12%  Similarity=0.096  Sum_probs=69.4

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+....        ..++|.+|+.+..+-+++.+|+. .++|+.++.++-...++..++..+.. ++..+..|+
T Consensus       145 ~~LLk~LEep~~--------~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~  215 (397)
T PRK14955        145 NAFLKTLEEPPP--------HAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG  215 (397)
T ss_pred             HHHHHHHhcCCC--------CeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            345555554332        55666677778889899888886 78999999888888888887655433 355578888


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHh---cCCCCCCHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFC---GKNSTPSQPKLLQAE  118 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~---~~~~~i~~~dl~~a~  118 (133)
                      +.+.| +.+.+...+......+   .....++.+++.+.+
T Consensus       216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v  254 (397)
T PRK14955        216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL  254 (397)
T ss_pred             HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence            88876 5555554333333333   234567777666543

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.62  E-value=0.047  Score=45.34  Aligned_cols=73  Identities=19%  Similarity=0.243  Sum_probs=53.9

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYT   98 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~   98 (133)
                      +.+|+.+.+  ..|++.+.+ +-..+++|+|+.+++.++++.+....+.. ++.+++.+++.+.|+|-.++....+.
T Consensus       115 ~~~i~~~~~--~~~p~el~~-~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~  188 (489)
T CHL00195        115 KTIIIIASE--LNIPKELKD-LITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSK  188 (489)
T ss_pred             CEEEEEcCC--CCCCHHHHh-ceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            344444432  456655554 56788999999999999999887654333 56778999999999999999865543

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.54  E-value=0.022  Score=42.22  Aligned_cols=84  Identities=14%  Similarity=0.217  Sum_probs=52.2

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCC---CCHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcH
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWN---IDDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDL   77 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~---lD~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~   77 (133)
                      +|...++.+...+      +-+|+++...|..   +++.+.+||..  .+++..|+.+.|..|++......++. ++.-+
T Consensus       118 ~lf~l~n~~~~~~------k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~  191 (219)
T PF00308_consen  118 ELFHLFNRLIESG------KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVI  191 (219)
T ss_dssp             HHHHHHHHHHHTT------SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHH
T ss_pred             HHHHHHHHHHhhC------CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHH
Confidence            3444555554443      5566666666665   46777778886  88889999999999999999765544 34446


Q ss_pred             HHHHHHcCCCCHHHHHH
Q psy15623         78 ELVSDQLEGNAVQQKVM   94 (133)
Q Consensus        78 ~~la~~t~G~sgadi~~   94 (133)
                      +.|++..++ +.++|..
T Consensus       192 ~~l~~~~~~-~~r~L~~  207 (219)
T PF00308_consen  192 EYLARRFRR-DVRELEG  207 (219)
T ss_dssp             HHHHHHTTS-SHHHHHH
T ss_pred             HHHHHhhcC-CHHHHHH
Confidence            778888763 6666653

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=96.53  E-value=0.0075  Score=47.82  Aligned_cols=54  Identities=17%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLI   65 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~   65 (133)
                      |.||..|+.-        .+++++|.+|++|+.|.|.+++|+ ..+.|++|+.++..+.|...
T Consensus       150 NaLLKtLEEP--------p~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~  203 (342)
T PRK06964        150 NALLKTLEEP--------PPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ  203 (342)
T ss_pred             HHHHHHhcCC--------CcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence            6777777743        337899999999999999999999 68999999999988888653

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=96.51  E-value=0.041  Score=46.84  Aligned_cols=94  Identities=12%  Similarity=0.086  Sum_probs=60.8

Q ss_pred             cEEEEE-eeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHH-HHH
Q psy15623         23 SIVILG-ASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKS-YTK   99 (133)
Q Consensus        23 ~v~vi~-aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~-~~~   99 (133)
                      ++++|+ ||+.++.+++++.+||. .+++++.+.++...|++..+.+.... ++.-++.|++.+.  .|+...+.. .+.
T Consensus       323 ~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~  399 (615)
T TIGR02903       323 DFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVY  399 (615)
T ss_pred             eEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHH
Confidence            455555 55668999999999997 57888899999999999999875432 2334556666552  454443221 111


Q ss_pred             HHH-------h--cCCCCCCHHHHHHHHH
Q psy15623        100 KTF-------C--GKNSTPSQPKLLQAER  119 (133)
Q Consensus       100 ~~~-------~--~~~~~i~~~dl~~a~~  119 (133)
                      ...       .  .....++.+|+.+++.
T Consensus       400 ~~~~~~~~~~~~~~~~~~I~~edv~~~l~  428 (615)
T TIGR02903       400 GYALYRAAEAGKENDKVTITQDDVYEVIQ  428 (615)
T ss_pred             HHHHHHHHHhccCCCCeeECHHHHHHHhC
Confidence            110       1  1223688999998865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=96.48  E-value=0.065  Score=45.44  Aligned_cols=98  Identities=12%  Similarity=0.082  Sum_probs=67.2

Q ss_pred             cEEEEEeeCCCC---CCCHHHHhccccEEEcC-CCCHHHHHHHHHHHHhcC-------------------------CCCC
Q psy15623         23 SIVILGASNFPW---NIDDAFLRRLEKRIYVP-LPSSSGRQELLRLILRQV-------------------------DLAS   73 (133)
Q Consensus        23 ~v~vi~aTn~~~---~lD~al~rRfd~~i~i~-~P~~~~R~~il~~~~~~~-------------------------~~~~   73 (133)
                      ++.||+|+|..+   .+.++++.||+.++.+. +|..++|.+|++..+...                         .+ +
T Consensus       127 ~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i-~  205 (589)
T TIGR02031       127 KFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTI-S  205 (589)
T ss_pred             ceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccC-C
Confidence            678899999765   79999999999999886 468888999998765211                         11 1


Q ss_pred             hhcHHHHHHHc--CCCC--HHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623         74 DLDLELVSDQL--EGNA--VQQKVM-KSYTKKTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        74 ~~~~~~la~~t--~G~s--gadi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      +..+..|+..+  -|.+  -++|.. ..+.+.+...++..++.+|+..+..-.
T Consensus       206 ~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lv  258 (589)
T TIGR02031       206 AEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELV  258 (589)
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            22233444443  3444  245543 455555666888999999999997643

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=96.45  E-value=0.021  Score=45.36  Aligned_cols=80  Identities=9%  Similarity=0.010  Sum_probs=57.4

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..|+.-..        ++++|..|+.|+.+.|.+++|+ ..+.+++|+.++-.++++......+++ +..+..+++
T Consensus       159 naLLk~LEEpp~--------~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~  228 (351)
T PRK09112        159 NAILKTLEEPPA--------RALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQ  228 (351)
T ss_pred             HHHHHHHhcCCC--------CceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHH
Confidence            567777776433        4566666788999999999999 699999999999999998753322222 334677888


Q ss_pred             HcCCCCHHHH
Q psy15623         83 QLEGNAVQQK   92 (133)
Q Consensus        83 ~t~G~sgadi   92 (133)
                      .+.|-...-+
T Consensus       229 ~s~G~pr~Al  238 (351)
T PRK09112        229 RSKGSVRKAL  238 (351)
T ss_pred             HcCCCHHHHH
Confidence            8877555444

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=96.34  E-value=0.099  Score=42.50  Aligned_cols=101  Identities=16%  Similarity=0.176  Sum_probs=65.4

Q ss_pred             cEEEEEeeCCCCCCC---HHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHH-
Q psy15623         23 SIVILGASNFPWNID---DAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMK-   95 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD---~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~-   95 (133)
                      +-+|+.+-..|..+.   |.+.+||.+  .+++.+|+.+.|..||+......++. ++.-+.-+|.+.. -+.++|... 
T Consensus       209 kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL  287 (408)
T COG0593         209 KQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGAL  287 (408)
T ss_pred             CEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHH
Confidence            456666666677655   888889885  56678899999999999977554444 3444677787776 466666532 


Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHhhhhc
Q psy15623         96 SYTKKTFCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        96 ~~~~~~~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      .............+|.+-+.+.++.+...
T Consensus       288 ~~l~~~a~~~~~~iTi~~v~e~L~~~~~~  316 (408)
T COG0593         288 NRLDAFALFTKRAITIDLVKEILKDLLRA  316 (408)
T ss_pred             HHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence            22222223333467777777776655443

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.31  E-value=0.084  Score=45.07  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=54.3

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.||..|+.-..        .+++|++|+.++.+-+.+.+|+ ..++|..|+.++-...+.....+.+.. +...+..|+
T Consensus       139 naLLK~LEePp~--------~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La  209 (620)
T PRK14948        139 NALLKTLEEPPP--------RVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVA  209 (620)
T ss_pred             HHHHHHHhcCCc--------CeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            567777775332        6778888888999999998898 457888888887777777776554333 234477888


Q ss_pred             HHcCC
Q psy15623         82 DQLEG   86 (133)
Q Consensus        82 ~~t~G   86 (133)
                      +.+.|
T Consensus       210 ~~s~G  214 (620)
T PRK14948        210 QRSQG  214 (620)
T ss_pred             HHcCC
Confidence            88876

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=96.30  E-value=0.052  Score=41.27  Aligned_cols=85  Identities=14%  Similarity=0.152  Sum_probs=58.8

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHH-----------------------HHhccccEEEcCCCCHHHHHH
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDA-----------------------FLRRLEKRIYVPLPSSSGRQE   60 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~a-----------------------l~rRfd~~i~i~~P~~~~R~~   60 (133)
                      .|-..|||--..    ..++|++.||||+-+.+.+-                       +..||-.+|.|..|+.++=.+
T Consensus       126 ~LKs~LeGgle~----~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~  201 (249)
T PF05673_consen  126 ALKSVLEGGLEA----RPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLA  201 (249)
T ss_pred             HHHHHhcCcccc----CCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHH
Confidence            344556654322    24599999999997776652                       222999999999999999999


Q ss_pred             HHHHHHhcCCCCCh-hcHHH----HHHHcCCCCHHHH
Q psy15623         61 LLRLILRQVDLASD-LDLEL----VSDQLEGNAVQQK   92 (133)
Q Consensus        61 il~~~~~~~~~~~~-~~~~~----la~~t~G~sgadi   92 (133)
                      |++.+++..++.-+ .++..    .|..-.|.||+-=
T Consensus       202 IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA  238 (249)
T PF05673_consen  202 IVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTA  238 (249)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHH
Confidence            99999987665522 33322    3344467777653

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=96.26  E-value=0.029  Score=44.24  Aligned_cols=75  Identities=19%  Similarity=0.222  Sum_probs=54.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..|+.-.        +++++|.+|+.++.|.|.+++|+.. +.|++|+.++-.+.+......   ..+.+...++.
T Consensus       124 NaLLK~LEEPp--------~~~~fiL~t~~~~~ll~TI~SRc~~-~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~  191 (328)
T PRK05707        124 NALLKSLEEPS--------GDTVLLLISHQPSRLLPTIKSRCQQ-QACPLPSNEESLQWLQQALPE---SDERERIELLT  191 (328)
T ss_pred             HHHHHHHhCCC--------CCeEEEEEECChhhCcHHHHhhcee-eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHH
Confidence            56666666533        3778999999999999999999988 899999999888777654321   22334455666


Q ss_pred             HcCCCCH
Q psy15623         83 QLEGNAV   89 (133)
Q Consensus        83 ~t~G~sg   89 (133)
                      .+.|--+
T Consensus       192 la~Gsp~  198 (328)
T PRK05707        192 LAGGSPL  198 (328)
T ss_pred             HcCCCHH
Confidence            6666444

>smart00350 MCM minichromosome maintenance proteins

Probab=96.24  E-value=0.15  Score=42.45  Aligned_cols=103  Identities=16%  Similarity=0.062  Sum_probs=67.7

Q ss_pred             CcEEEEEeeCCCC-------------CCCHHHHhccccEEEc-CCCCHHHHHHHHHHHHhcCC---------C---C---
Q psy15623         22 KSIVILGASNFPW-------------NIDDAFLRRLEKRIYV-PLPSSSGRQELLRLILRQVD---------L---A---   72 (133)
Q Consensus        22 ~~v~vi~aTn~~~-------------~lD~al~rRfd~~i~i-~~P~~~~R~~il~~~~~~~~---------~---~---   72 (133)
                      .+..||||+|..+             .|++++++|||-.+.+ +.|+.+...+|.+..+....         .   .   
T Consensus       342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~  421 (509)
T smart00350      342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQE  421 (509)
T ss_pred             CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHH
Confidence            3688999999642             6999999999987666 78999999999987653210         0   0   


Q ss_pred             -----------------ChhcHHHHHH-----H----------cCCCCHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHH
Q psy15623         73 -----------------SDLDLELVSD-----Q----------LEGNAVQQKVMK--SYTKKTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        73 -----------------~~~~~~~la~-----~----------t~G~sgadi~~~--~~~~~~~~~~~~~i~~~dl~~a~  118 (133)
                                       ++...+.|.+     +          ..|.|++.+..+  .+.+.+....+..++.+|+..|+
T Consensus       422 ~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai  501 (509)
T smart00350      422 FLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAI  501 (509)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence                             0110111110     1          124566777653  44444455778889999999998


Q ss_pred             Hhhhhc
Q psy15623        119 RPFRRS  124 (133)
Q Consensus       119 ~~~~~s  124 (133)
                      +-++.|
T Consensus       502 ~l~~~s  507 (509)
T smart00350      502 RLLRES  507 (509)
T ss_pred             HHHHHh
Confidence            877665

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=96.23  E-value=0.062  Score=44.89  Aligned_cols=92  Identities=14%  Similarity=0.155  Sum_probs=66.3

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK  100 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~  100 (133)
                      ..|++|.||..|+.|++-+++|+.+ +.|..-+.++-...+..++.+..+. .+.-+.-+|+..+| |.+|-..+.-.+.
T Consensus       148 ~hV~FIlATTe~~Kip~TIlSRcq~-f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i  225 (515)
T COG2812         148 SHVKFILATTEPQKIPNTILSRCQR-FDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAI  225 (515)
T ss_pred             cCeEEEEecCCcCcCchhhhhcccc-ccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHH
Confidence            4788888888899999999998764 5666667788888888888776655 34557889999987 6777766554444


Q ss_pred             HHhcCCCCCCHHHHHHH
Q psy15623        101 TFCGKNSTPSQPKLLQA  117 (133)
Q Consensus       101 ~~~~~~~~i~~~dl~~a  117 (133)
                      ..+.  ..++.+.+...
T Consensus       226 ~~~~--~~It~~~v~~~  240 (515)
T COG2812         226 AFGE--GEITLESVRDM  240 (515)
T ss_pred             HccC--CcccHHHHHHH
Confidence            4443  44555555443

>CHL00095 clpC Clp protease ATP binding subunit

Probab=96.16  E-value=0.039  Score=48.42  Aligned_cols=68  Identities=25%  Similarity=0.307  Sum_probs=52.4

Q ss_pred             CcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCC-ChhcHHHHHHHcCCCCHH
Q psy15623         22 KSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQLEGNAVQ   90 (133)
Q Consensus        22 ~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~-~~~~~~~la~~t~G~sga   90 (133)
                      +.+.+||+|+...     ..|+++.|||.. |+++.|+.++...|++.+...    ..+. ++.-+..++..+.||.+.
T Consensus       306 g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~  383 (821)
T CHL00095        306 GELQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIAD  383 (821)
T ss_pred             CCcEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Confidence            3689999999764     589999999975 799999999999999866532    2222 345578888888887764

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.03  E-value=0.13  Score=44.64  Aligned_cols=94  Identities=12%  Similarity=0.091  Sum_probs=58.7

Q ss_pred             cEEEEEeeCC--CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc-------CCCC-ChhcHHHHHHHcCCCCHHHH
Q psy15623         23 SIVILGASNF--PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ-------VDLA-SDLDLELVSDQLEGNAVQQK   92 (133)
Q Consensus        23 ~v~vi~aTn~--~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~-------~~~~-~~~~~~~la~~t~G~sgadi   92 (133)
                      .+++|++|+.  ...+++++++|+ ..+++++++.+++..+++..+..       ..+. ++.-++.|++.+.| ..+++
T Consensus       137 ~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~l  214 (725)
T PRK13341        137 TITLIGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSL  214 (725)
T ss_pred             eEEEEEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHH
Confidence            6777776643  356899999996 57999999999999999998862       1122 34446778887754 44444


Q ss_pred             HHHHHHHHHHhc--C--CCCCCHHHHHHHH
Q psy15623         93 VMKSYTKKTFCG--K--NSTPSQPKLLQAE  118 (133)
Q Consensus        93 ~~~~~~~~~~~~--~--~~~i~~~dl~~a~  118 (133)
                      .+....+.....  .  ...++.+.+.+.+
T Consensus       215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l  244 (725)
T PRK13341        215 LNALELAVESTPPDEDGLIDITLAIAEESI  244 (725)
T ss_pred             HHHHHHHHHhcccCCCCceeccHHHHHHHH
Confidence            443332222221  1  1226656655554

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.01  E-value=0.056  Score=40.49  Aligned_cols=83  Identities=7%  Similarity=-0.004  Sum_probs=62.4

Q ss_pred             HHHhccccEEEcCCCCHHHHHHHHHHHHhcCCC-----CChhcHHHHHHHcCCCCHHHHHHHHHHH--HHHhcCCCCCCH
Q psy15623         39 AFLRRLEKRIYVPLPSSSGRQELLRLILRQVDL-----ASDLDLELVSDQLEGNAVQQKVMKSYTK--KTFCGKNSTPSQ  111 (133)
Q Consensus        39 al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~-----~~~~~~~~la~~t~G~sgadi~~~~~~~--~~~~~~~~~i~~  111 (133)
                      .+.+|+...+++++.+.++-.+++...++..+.     -++..++.|++.|.|.... |...+..+  .+...+...++.
T Consensus       178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~~~i~~  256 (269)
T TIGR03015       178 QLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEKREIGG  256 (269)
T ss_pred             HHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCCCCCCH
Confidence            355589999999999999999999988864331     1345688899999998655 76554443  334467788999


Q ss_pred             HHHHHHHHhhh
Q psy15623        112 PKLLQAERPFR  122 (133)
Q Consensus       112 ~dl~~a~~~~~  122 (133)
                      +++.+++...+
T Consensus       257 ~~v~~~~~~~~  267 (269)
T TIGR03015       257 EEVREVIAEID  267 (269)
T ss_pred             HHHHHHHHHhh
Confidence            99999987654

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=95.98  E-value=0.24  Score=39.51  Aligned_cols=99  Identities=8%  Similarity=0.053  Sum_probs=64.4

Q ss_pred             CcEEEEEeeCCCC-CCCHHHHhccccEEEcCCCC-HHHHHHHHHHHHhcC--CC--------------------------
Q psy15623         22 KSIVILGASNFPW-NIDDAFLRRLEKRIYVPLPS-SSGRQELLRLILRQV--DL--------------------------   71 (133)
Q Consensus        22 ~~v~vi~aTn~~~-~lD~al~rRfd~~i~i~~P~-~~~R~~il~~~~~~~--~~--------------------------   71 (133)
                      .++++|++.|-.+ .+.++++.||..++.+..|+ .+.|.+|++......  +.                          
T Consensus       186 ~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~  265 (350)
T CHL00081        186 ARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPK  265 (350)
T ss_pred             CCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCC
Confidence            4788999888654 69999999999999999997 699999998753210  00                          


Q ss_pred             -C-Chhc---HHHHHHHcCCCCH-HHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHh
Q psy15623         72 -A-SDLD---LELVSDQLEGNAV-QQKVM-KSYTKKTFCGKNSTPSQPKLLQAERP  120 (133)
Q Consensus        72 -~-~~~~---~~~la~~t~G~sg-adi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~  120 (133)
                       . ++.-   +..++..+.--|+ ++|.. ..+.+.++..++..++.+|+..+...
T Consensus       266 V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~  321 (350)
T CHL00081        266 VEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITL  321 (350)
T ss_pred             CccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence             0 0111   2233333332222 33332 34445555688889999999988663

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=95.65  E-value=0.022  Score=49.81  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=39.6

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR   67 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~   67 (133)
                      ++|++|+|||.. .|+||++.||+ .|.++.++.++..+|.+.++.
T Consensus       464 s~v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~  507 (784)
T PRK10787        464 SDVMFVATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL  507 (784)
T ss_pred             CceEEEEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhh
Confidence            489999999987 59999999996 789999999999999998883

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=95.34  E-value=0.055  Score=42.30  Aligned_cols=45  Identities=24%  Similarity=0.432  Sum_probs=35.6

Q ss_pred             CcEEEEEeeC-----CCCCCCHHHHhccccEEEcCCC-CHHHHHHHHHHHH
Q psy15623         22 KSIVILGASN-----FPWNIDDAFLRRLEKRIYVPLP-SSSGRQELLRLIL   66 (133)
Q Consensus        22 ~~v~vi~aTn-----~~~~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~   66 (133)
                      .+.+||+|+|     ....+++|+++||...++++.| ..++...++....
T Consensus       153 ~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~  203 (329)
T COG0714         153 PPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG  203 (329)
T ss_pred             CCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence            4788999999     7788999999999999999999 5555555554443

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=95.24  E-value=0.13  Score=43.83  Aligned_cols=98  Identities=10%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             cEEEEEeeCCC--CCCCHHHHhccc---cEEEcC--CC-CHHHHHHHHHHHHh---cC---CCCChhcHHHHHHHc---C
Q psy15623         23 SIVILGASNFP--WNIDDAFLRRLE---KRIYVP--LP-SSSGRQELLRLILR---QV---DLASDLDLELVSDQL---E   85 (133)
Q Consensus        23 ~v~vi~aTn~~--~~lD~al~rRfd---~~i~i~--~P-~~~~R~~il~~~~~---~~---~~~~~~~~~~la~~t---~   85 (133)
                      ++.+|+++|..  ..+||.+..||+   .+++++  .| +.+.|..+.+.+.+   ..   +.-++.-+..|.+..   .
T Consensus       268 dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~a  347 (608)
T TIGR00764       268 DFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRA  347 (608)
T ss_pred             ceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHH
Confidence            68899999964  679999999999   667664  34 56777666655443   22   211222334443221   1


Q ss_pred             ------CCCHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHh
Q psy15623         86 ------GNAVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERP  120 (133)
Q Consensus        86 ------G~sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~  120 (133)
                            -.+.++|..++..+...  ..+...++.+|+.+|++.
T Consensus       348 g~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~  390 (608)
T TIGR00764       348 GRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKL  390 (608)
T ss_pred             hcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence                  14567887766555443  345678999999998663

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK14700 recombination factor protein RarA; Provisional

Probab=95.20  E-value=0.37  Score=37.64  Aligned_cols=91  Identities=19%  Similarity=0.153  Sum_probs=60.1

Q ss_pred             CcEEEEEeeCC--CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC------CCC-ChhcHHHHHHHcCCCCHHHH
Q psy15623         22 KSIVILGASNF--PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV------DLA-SDLDLELVSDQLEGNAVQQK   92 (133)
Q Consensus        22 ~~v~vi~aTn~--~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~------~~~-~~~~~~~la~~t~G~sgadi   92 (133)
                      +.|++||||..  --.+-+|+++|. +.+++...+.++-..+++..+...      .+. ++.-++.|++.+.|    |.
T Consensus         7 G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G----Da   81 (300)
T PRK14700          7 GKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG----DC   81 (300)
T ss_pred             CcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC----HH
Confidence            37888887743  566999999999 889999999999999999888641      111 33446667766665    76


Q ss_pred             HH----HHHHHHHHhcC--CCCCCHHHHHHHH
Q psy15623         93 VM----KSYTKKTFCGK--NSTPSQPKLLQAE  118 (133)
Q Consensus        93 ~~----~~~~~~~~~~~--~~~i~~~dl~~a~  118 (133)
                      +.    ++.+. .....  ...++.+++.+.+
T Consensus        82 R~aLN~LE~a~-~~~~~~~~~~it~~~~~~~~  112 (300)
T PRK14700         82 RKILNLLERMF-LISTRGDEIYLNKELFDQAV  112 (300)
T ss_pred             HHHHHHHHHHH-hhccccCCCccCHHHHHHHH
Confidence            53    22222 11211  2237877777664

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=95.15  E-value=0.52  Score=40.35  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=63.3

Q ss_pred             CcEEEEEeeCCC-CCCCHHHHhccccEEEcCCC-CHHHHHHHHHHHHhc-------------------------------
Q psy15623         22 KSIVILGASNFP-WNIDDAFLRRLEKRIYVPLP-SSSGRQELLRLILRQ-------------------------------   68 (133)
Q Consensus        22 ~~v~vi~aTn~~-~~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~~~-------------------------------   68 (133)
                      .++.+|+|+|.. ..+.++++.||+.++.++.| +.++|.++++..+..                               
T Consensus       168 ~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~  247 (633)
T TIGR02442       168 ARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPS  247 (633)
T ss_pred             CCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCC
Confidence            468999999953 46899999999999999877 467888887653320                               


Q ss_pred             CCCCChhcHHHHHHHc--CCCC-H-HHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHh
Q psy15623         69 VDLASDLDLELVSDQL--EGNA-V-QQKVM-KSYTKKTFCGKNSTPSQPKLLQAERP  120 (133)
Q Consensus        69 ~~~~~~~~~~~la~~t--~G~s-g-adi~~-~~~~~~~~~~~~~~i~~~dl~~a~~~  120 (133)
                      ..+ ++..++.|+..+  -|.+ . +++.. ..+.+.+...++..++.+|+.+|+.-
T Consensus       248 V~i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~l  303 (633)
T TIGR02442       248 VRI-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAEL  303 (633)
T ss_pred             CCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence            011 112233344433  2332 2 33432 34445556688889999999999763

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=95.06  E-value=0.2  Score=39.65  Aligned_cols=49  Identities=8%  Similarity=0.060  Sum_probs=41.0

Q ss_pred             CCCcEEEEEeeCCCC------------CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623         20 PTKSIVILGASNFPW------------NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ   68 (133)
Q Consensus        20 ~~~~v~vi~aTn~~~------------~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~   68 (133)
                      +.+...||||+|..+            .+++|++.||-.++.++.|+.+.-.+|+.....+
T Consensus       175 ~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~  235 (327)
T TIGR01650       175 AHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKG  235 (327)
T ss_pred             CCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccC
Confidence            344788999999765            3589999999999999999999999999876543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=94.82  E-value=0.2  Score=38.81  Aligned_cols=74  Identities=11%  Similarity=0.069  Sum_probs=51.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..|+.-.        +++++|.+|+.|+.+-|.+.+|+. .++|+.|+.++-...++....+.   ++..+..++.
T Consensus       111 naLLK~LEepp--------~~t~~il~~~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~  178 (313)
T PRK05564        111 NAFLKTIEEPP--------KGVFIILLCENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIA  178 (313)
T ss_pred             HHHHHHhcCCC--------CCeEEEEEeCChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHH
Confidence            45666666433        256666677889999999999995 89999999988877776554322   2334566676


Q ss_pred             HcCCCC
Q psy15623         83 QLEGNA   88 (133)
Q Consensus        83 ~t~G~s   88 (133)
                      .+.|-.
T Consensus       179 ~~~g~~  184 (313)
T PRK05564        179 FSDGIP  184 (313)
T ss_pred             HcCCCH
Confidence            666633

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=94.71  E-value=0.23  Score=39.70  Aligned_cols=77  Identities=13%  Similarity=0.070  Sum_probs=54.1

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..++.-..        ++++|.+|+.++.+.|.+.+|+. .+.+++|+.++-.+++......   ..+..+..++.
T Consensus       159 naLLK~LEepp~--------~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~l~~  226 (365)
T PRK07471        159 NALLKVLEEPPA--------RSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVIDALAAAGPD---LPDDPRAALAA  226 (365)
T ss_pred             HHHHHHHhcCCC--------CeEEEEEECCchhchHHhhccce-EEECCCCCHHHHHHHHHHhccc---CCHHHHHHHHH
Confidence            566666765433        56788899999999999888874 7899999999998888775422   12223356777


Q ss_pred             HcCCCCHHH
Q psy15623         83 QLEGNAVQQ   91 (133)
Q Consensus        83 ~t~G~sgad   91 (133)
                      .+.|--+.-
T Consensus       227 ~s~Gsp~~A  235 (365)
T PRK07471        227 LAEGSVGRA  235 (365)
T ss_pred             HcCCCHHHH
Confidence            777754433

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=94.65  E-value=0.048  Score=41.04  Aligned_cols=66  Identities=11%  Similarity=0.182  Sum_probs=49.7

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCC
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGN   87 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~   87 (133)
                      ++.-+||||++...|.+.++.||-....+..=+.++-..|++...+...+. .+.-...||.++.|-
T Consensus       148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt  214 (233)
T PF05496_consen  148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT  214 (233)
T ss_dssp             ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred             CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence            357899999999999999999999999999999999999998877776655 455578899998873

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>KOG0989|consensus

Probab=94.14  E-value=1  Score=35.58  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=56.8

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.|..-||.+..        .+.+|..||.++.|..-+.+|+.+ +.|+.-..+.....|+....+.++. ++.-++.|+
T Consensus       147 ~aLrr~mE~~s~--------~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~  217 (346)
T KOG0989|consen  147 AALRRTMEDFSR--------TTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIA  217 (346)
T ss_pred             HHHHHHHhcccc--------ceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            456777888655        568889999999999999999876 5565555566666777777665554 344578888


Q ss_pred             HHcCCCCHHHHH
Q psy15623         82 DQLEGNAVQQKV   93 (133)
Q Consensus        82 ~~t~G~sgadi~   93 (133)
                      +.++|    ||+
T Consensus       218 ~~S~G----dLR  225 (346)
T KOG0989|consen  218 KISDG----DLR  225 (346)
T ss_pred             HHcCC----cHH
Confidence            87766    775

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=94.05  E-value=0.34  Score=37.92  Aligned_cols=78  Identities=10%  Similarity=0.051  Sum_probs=55.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..|+.-.         +.++|..|+.|+.|-|.+++|+ ..++|++|+.++-.+++........  .+.+...++.
T Consensus       142 NaLLK~LEEPp---------~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~  209 (314)
T PRK07399        142 NALLKTLEEPG---------NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLA  209 (314)
T ss_pred             HHHHHHHhCCC---------CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHH
Confidence            45666666543         2356677788999999999998 6789999999999998887643211  1223577888


Q ss_pred             HcCCCCHHHH
Q psy15623         83 QLEGNAVQQK   92 (133)
Q Consensus        83 ~t~G~sgadi   92 (133)
                      .+.|--+.-+
T Consensus       210 ~a~Gs~~~al  219 (314)
T PRK07399        210 LAQGSPGAAI  219 (314)
T ss_pred             HcCCCHHHHH
Confidence            8877555444

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=93.86  E-value=0.31  Score=38.49  Aligned_cols=74  Identities=16%  Similarity=0.119  Sum_probs=52.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..|+.        |.+++++|..|+.|+.|-|-+++|+.. +.|++|+.++-.+.|...   .+.+ ......++.
T Consensus       126 NaLLKtLEE--------Pp~~t~fiL~t~~~~~lLpTIrSRCq~-~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~  192 (334)
T PRK07993        126 NALLKTLEE--------PPENTWFFLACREPARLLATLRSRCRL-HYLAPPPEQYALTWLSRE---VTMS-QDALLAALR  192 (334)
T ss_pred             HHHHHHhcC--------CCCCeEEEEEECChhhChHHHHhcccc-ccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHH
Confidence            456666654        334789999999999999999999994 799999988877777532   2222 233455666


Q ss_pred             HcCCCCH
Q psy15623         83 QLEGNAV   89 (133)
Q Consensus        83 ~t~G~sg   89 (133)
                      .+.|--+
T Consensus       193 la~G~~~  199 (334)
T PRK07993        193 LSAGAPG  199 (334)
T ss_pred             HcCCCHH
Confidence            6666444

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=93.49  E-value=0.28  Score=38.64  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=42.3

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL   64 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~   64 (133)
                      |.||..++.        |.+++++|..|+.|+.|-|.+++|+. .+.|+.|+.++-.+.+..
T Consensus       126 NaLLKtLEE--------Pp~~t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~~~~~~L~~  178 (319)
T PRK06090        126 NALLKTLEE--------PAPNCLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTAQAMQWLKG  178 (319)
T ss_pred             HHHHHHhcC--------CCCCeEEEEEECChhhChHHHHhcce-eEeCCCCCHHHHHHHHHH
Confidence            456666664        33478999999999999999999998 688999999888877754

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=92.99  E-value=0.78  Score=36.12  Aligned_cols=76  Identities=13%  Similarity=0.121  Sum_probs=52.9

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..|+.=.        +++++|.+|+.++.|-|.+++|+.. +.|+.|+.++-.+.|...    +.+ ..+...++.
T Consensus       131 NaLLKtLEEPp--------~~~~fiL~~~~~~~lLpTIrSRCq~-i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~  196 (319)
T PRK08769        131 NALLKTLEEPS--------PGRYLWLISAQPARLPATIRSRCQR-LEFKLPPAHEALAWLLAQ----GVS-ERAAQEALD  196 (319)
T ss_pred             HHHHHHhhCCC--------CCCeEEEEECChhhCchHHHhhheE-eeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHH
Confidence            55666666543        3678888899999999999999875 678888888777666532    222 333556777


Q ss_pred             HcCCCCHHHH
Q psy15623         83 QLEGNAVQQK   92 (133)
Q Consensus        83 ~t~G~sgadi   92 (133)
                      .+.|--+.-+
T Consensus       197 l~~G~p~~A~  206 (319)
T PRK08769        197 AARGHPGLAA  206 (319)
T ss_pred             HcCCCHHHHH
Confidence            7777655444

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=92.98  E-value=0.96  Score=34.71  Aligned_cols=51  Identities=8%  Similarity=0.071  Sum_probs=44.4

Q ss_pred             CcEEEEEeeCCCCCCCHHH----------------------HhccccEEEcCCCCHHHHHHHHHHHHhcCCCC
Q psy15623         22 KSIVILGASNFPWNIDDAF----------------------LRRLEKRIYVPLPSSSGRQELLRLILRQVDLA   72 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al----------------------~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~   72 (133)
                      .+|++-||+|+-+.|+.-.                      -.||.-.+.|.+|+.++-..|+..+.++..++
T Consensus       173 ~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~  245 (287)
T COG2607         173 ANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD  245 (287)
T ss_pred             CeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence            5899999999999888322                      12999999999999999999999999988776

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=92.44  E-value=0.27  Score=40.58  Aligned_cols=30  Identities=27%  Similarity=0.295  Sum_probs=25.8

Q ss_pred             CcEEEEEeeCCCC----CCCHHHHhccccEEEcCC
Q psy15623         22 KSIVILGASNFPW----NIDDAFLRRLEKRIYVPL   52 (133)
Q Consensus        22 ~~v~vi~aTn~~~----~lD~al~rRfd~~i~i~~   52 (133)
                      .++.+|||+|..+    .+|.|++|||.. |++.+
T Consensus       324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p  357 (459)
T PRK11331        324 ENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP  357 (459)
T ss_pred             CCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence            4899999999998    899999999965 66654

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=92.01  E-value=0.44  Score=31.11  Aligned_cols=29  Identities=38%  Similarity=0.770  Sum_probs=25.3

Q ss_pred             cEEEEEeeCCCC--CCCHHHHhccccEEEcC
Q psy15623         23 SIVILGASNFPW--NIDDAFLRRLEKRIYVP   51 (133)
Q Consensus        23 ~v~vi~aTn~~~--~lD~al~rRfd~~i~i~   51 (133)
                      ++.+|++||.+.  .+++.+..||+.+++++
T Consensus       120 ~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~  150 (151)
T cd00009         120 NVRVIGATNRPLLGDLDRALYDRLDIRIVIP  150 (151)
T ss_pred             CeEEEEecCccccCCcChhHHhhhccEeecC
Confidence            788999999887  78999999999888876

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=91.85  E-value=1.2  Score=35.13  Aligned_cols=73  Identities=12%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..|+.        |.+++++|.+|+.++.|.|.+++|+.. +.|++|+.++-.+.|.....    ..+.....++.
T Consensus       125 NaLLKtLEE--------Pp~~~~fiL~t~~~~~llpTI~SRC~~-~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~  191 (325)
T PRK06871        125 NALLKTLEE--------PRPNTYFLLQADLSAALLPTIYSRCQT-WLIHPPEEQQALDWLQAQSS----AEISEILTALR  191 (325)
T ss_pred             HHHHHHhcC--------CCCCeEEEEEECChHhCchHHHhhceE-EeCCCCCHHHHHHHHHHHhc----cChHHHHHHHH
Confidence            455555554        334788999999999999999999875 67888988888777765421    11223444455


Q ss_pred             HcCCCC
Q psy15623         83 QLEGNA   88 (133)
Q Consensus        83 ~t~G~s   88 (133)
                      .+.|--
T Consensus       192 l~~g~p  197 (325)
T PRK06871        192 INYGRP  197 (325)
T ss_pred             HcCCCH
Confidence            555533

>PRK09862 putative ATP-dependent protease; Provisional

Probab=91.59  E-value=4  Score=34.26  Aligned_cols=98  Identities=17%  Similarity=0.196  Sum_probs=57.2

Q ss_pred             CcEEEEEeeCCCC---------------------CCCHHHHhccccEEEcCCCCHH----------HHHHHHHHHH----
Q psy15623         22 KSIVILGASNFPW---------------------NIDDAFLRRLEKRIYVPLPSSS----------GRQELLRLIL----   66 (133)
Q Consensus        22 ~~v~vi~aTn~~~---------------------~lD~al~rRfd~~i~i~~P~~~----------~R~~il~~~~----   66 (133)
                      .++.+|+|+|...                     .|..+++.|||.+++++.|+.+          .+..|-+...    
T Consensus       336 a~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~  415 (506)
T PRK09862        336 ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARE  415 (506)
T ss_pred             CCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHH
Confidence            3789999999742                     4788999999999999988532          1222221111    


Q ss_pred             ----hcCCCCChhc---H----------HH---HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHH
Q psy15623         67 ----RQVDLASDLD---L----------EL---VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        67 ----~~~~~~~~~~---~----------~~---la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~  119 (133)
                          ++..+.....   +          ..   -+...-|+|++....+...++.  ...++..++.+|+.+|+.
T Consensus       416 ~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~  490 (506)
T PRK09862        416 RQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS  490 (506)
T ss_pred             HHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence                0000000000   1          00   1112346777777654444444  447788899999999965

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=91.30  E-value=3.1  Score=34.06  Aligned_cols=46  Identities=20%  Similarity=0.311  Sum_probs=38.2

Q ss_pred             CCcEEEEEeeCC-CCCCCHHHHhccccEEEcCCC-CHHHHHHHHHHHH
Q psy15623         21 TKSIVILGASNF-PWNIDDAFLRRLEKRIYVPLP-SSSGRQELLRLIL   66 (133)
Q Consensus        21 ~~~v~vi~aTn~-~~~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~   66 (133)
                      -.++++|||+|- ...|-|-|+.||...+.+..| +.++|.+|.+.-+
T Consensus       185 pa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~  232 (423)
T COG1239         185 PARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL  232 (423)
T ss_pred             CccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence            347999999997 456888899999999999876 7899999986544

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=91.25  E-value=0.59  Score=40.65  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=61.0

Q ss_pred             HHHHHHHhhCCCCCC--CCC-CCCcEEEEEeeCCCC-------------------------CCCHHHHhccccEEEcCCC
Q psy15623          2 KSELLCHMDGIASTT--NAD-PTKSIVILGASNFPW-------------------------NIDDAFLRRLEKRIYVPLP   53 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~--~~~-~~~~v~vi~aTn~~~-------------------------~lD~al~rRfd~~i~i~~P   53 (133)
                      .+.||+.||.-.=.+  +.. .-.++++|+|||...                         .+.|.++.|||.++.|.+.
T Consensus       570 ~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pL  649 (731)
T TIGR02639       570 YNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPL  649 (731)
T ss_pred             HHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCC
Confidence            466788887532111  000 113678999998742                         2578888899999999999


Q ss_pred             CHHHHHHHHHHHHhcC---------CCC-ChhcHHHHHHHc--CCCCHHHHH
Q psy15623         54 SSSGRQELLRLILRQV---------DLA-SDLDLELVSDQL--EGNAVQQKV   93 (133)
Q Consensus        54 ~~~~R~~il~~~~~~~---------~~~-~~~~~~~la~~t--~G~sgadi~   93 (133)
                      +.++..+|++..+.+.         .+. ++.-++.|++..  ..+.++.|+
T Consensus       650 s~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~  701 (731)
T TIGR02639       650 SEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLA  701 (731)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHH
Confidence            9999999999888532         111 333456677753  456667775

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=91.19  E-value=6  Score=31.14  Aligned_cols=67  Identities=7%  Similarity=0.131  Sum_probs=57.0

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCC
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNA   88 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~s   88 (133)
                      ++.-+||||.+...|..-+..||.....+..=+.++-.+|++...+.+.+. .+.-..+||+++-|--
T Consensus       150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP  217 (332)
T COG2255         150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP  217 (332)
T ss_pred             CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence            467799999999999999888999999999999999999999888776665 4455678899888743

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=91.10  E-value=1.6  Score=35.05  Aligned_cols=102  Identities=15%  Similarity=0.121  Sum_probs=67.7

Q ss_pred             CCcEEEEEeeCCCC---CCCHHHHhcc-ccEEEcCCCCHHHHHHHHHHHHhcC---CCCChhcHHHHHHHcCCCCHHHHH
Q psy15623         21 TKSIVILGASNFPW---NIDDAFLRRL-EKRIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQLEGNAVQQKV   93 (133)
Q Consensus        21 ~~~v~vi~aTn~~~---~lD~al~rRf-d~~i~i~~P~~~~R~~il~~~~~~~---~~~~~~~~~~la~~t~G~sgadi~   93 (133)
                      ..+|.+|+.+|..+   .+||-+.++| ...|.||+=+.++-..|++.-.+..   +.-++.-+..+|.... ..++|.+
T Consensus       154 ~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a-~~~GDAR  232 (366)
T COG1474         154 KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA-AESGDAR  232 (366)
T ss_pred             ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH-HcCccHH
Confidence            35789999999864   6888888854 3558999999999999999887542   1112222343443333 3333654


Q ss_pred             ---HHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh
Q psy15623         94 ---MKSYTKKTFC--GKNSTPSQPKLLQAERPFRR  123 (133)
Q Consensus        94 ---~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~  123 (133)
                         .++..+...+  .+...++.+++..|.++...
T Consensus       233 ~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~  267 (366)
T COG1474         233 KAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER  267 (366)
T ss_pred             HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence               2455555554  47788999999999665544

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=90.30  E-value=5.7  Score=32.53  Aligned_cols=64  Identities=22%  Similarity=0.350  Sum_probs=43.6

Q ss_pred             CcEEEEEeeC--CCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHH--hcCCCC------ChhcHHHHHHHcCC
Q psy15623         22 KSIVILGASN--FPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL--RQVDLA------SDLDLELVSDQLEG   86 (133)
Q Consensus        22 ~~v~vi~aTn--~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~--~~~~~~------~~~~~~~la~~t~G   86 (133)
                      +.|++||||.  ---.|-+|+++|.- ++++.+-+.++-..+++.-+  .+.++.      ++.-++.|+..++|
T Consensus       131 G~iilIGATTENPsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G  204 (436)
T COG2256         131 GTIILIGATTENPSFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG  204 (436)
T ss_pred             CeEEEEeccCCCCCeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence            3678888774  35579999999874 57777778888888888743  222332      23345667777766

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=90.06  E-value=8.2  Score=32.98  Aligned_cols=96  Identities=9%  Similarity=0.045  Sum_probs=58.1

Q ss_pred             cEEEEEeeCCC---CCCCHHHHhccccEEEcCCCCHHHH-------HHHHH--HHHhcCCCCChhcHHHHHHHc--CCC-
Q psy15623         23 SIVILGASNFP---WNIDDAFLRRLEKRIYVPLPSSSGR-------QELLR--LILRQVDLASDLDLELVSDQL--EGN-   87 (133)
Q Consensus        23 ~v~vi~aTn~~---~~lD~al~rRfd~~i~i~~P~~~~R-------~~il~--~~~~~~~~~~~~~~~~la~~t--~G~-   87 (133)
                      +.++||+-|..   ..|.++++.||+.++.++.|...+-       .+|..  ..+.+..++ +..+..+++.+  -|. 
T Consensus       136 ~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~  214 (584)
T PRK13406        136 RFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIA  214 (584)
T ss_pred             CcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCC
Confidence            56777763322   3499999999999999998875432       12222  222233332 33344444433  243 


Q ss_pred             CHH-HHH-HHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         88 AVQ-QKV-MKSYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        88 sga-di~-~~~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      |.+ ++. ...+.+.+...++..++.+|+.++..
T Consensus       215 S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~  248 (584)
T PRK13406        215 SLRAPLLALRAARAAAALAGRTAVEEEDLALAAR  248 (584)
T ss_pred             CcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            333 333 34555555668888999999999976

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=89.69  E-value=1  Score=35.35  Aligned_cols=53  Identities=11%  Similarity=0.035  Sum_probs=39.6

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL   64 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~   64 (133)
                      |.||..|+.-.        +.+++|.+|+.++.|-|.+++|+. .++|+.|+.++-.++++.
T Consensus       128 NaLLK~LEEPp--------~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~~~~~~~~~L~~  180 (329)
T PRK08058        128 NSLLKFLEEPS--------GGTTAILLTENKHQILPTILSRCQ-VVEFRPLPPESLIQRLQE  180 (329)
T ss_pred             HHHHHHhcCCC--------CCceEEEEeCChHhCcHHHHhhce-eeeCCCCCHHHHHHHHHH
Confidence            45666666543        366777788889999999999876 588888888877666653

>KOG2035|consensus

Probab=89.46  E-value=6.2  Score=31.08  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~  101 (133)
                      ..=+|...|..+.|-+++.+|+= .|.+|-|+.++-..++...+++..+. +..-+..||+.++|---.-|.++++....
T Consensus       157 ~~RlIl~cns~SriIepIrSRCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~  235 (351)
T KOG2035|consen  157 NCRLILVCNSTSRIIEPIRSRCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVN  235 (351)
T ss_pred             CceEEEEecCcccchhHHhhhee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence            34566678888999999999763 58899999999999999999876555 34457889988876444444333332222


Q ss_pred             ---HhcCCCCCCHHHHHHHHH
Q psy15623        102 ---FCGKNSTPSQPKLLQAER  119 (133)
Q Consensus       102 ---~~~~~~~i~~~dl~~a~~  119 (133)
                         ...+...+...|++..+.
T Consensus       236 n~~~~a~~~~i~~~dWe~~i~  256 (351)
T KOG2035|consen  236 NEPFTANSQVIPKPDWEIYIQ  256 (351)
T ss_pred             cccccccCCCCCCccHHHHHH
Confidence               112224566666665544

>KOG2227|consensus

Probab=89.27  E-value=1.3  Score=36.91  Aligned_cols=73  Identities=19%  Similarity=0.197  Sum_probs=59.7

Q ss_pred             CCCcEEEEEeeCCCCCCCHHHHh-cc-----ccEEEcCCCCHHHHHHHHHHHHhcCCCCCh--hcHHHHHHHcCCCCHHH
Q psy15623         20 PTKSIVILGASNFPWNIDDAFLR-RL-----EKRIYVPLPSSSGRQELLRLILRQVDLASD--LDLELVSDQLEGNAVQQ   91 (133)
Q Consensus        20 ~~~~v~vi~aTn~~~~lD~al~r-Rf-----d~~i~i~~P~~~~R~~il~~~~~~~~~~~~--~~~~~la~~t~G~sgad   91 (133)
                      ++.++++||..|..+.=|..+.| +.     ...+.|++=+.++..+|++.-+...+....  .-++-.|++..|.|| |
T Consensus       286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-D  364 (529)
T KOG2227|consen  286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-D  364 (529)
T ss_pred             CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-h
Confidence            56689999999999999999888 43     467889988999999999999987765533  346778999999887 5


Q ss_pred             HH
Q psy15623         92 KV   93 (133)
Q Consensus        92 i~   93 (133)
                      ++
T Consensus       365 lR  366 (529)
T KOG2227|consen  365 LR  366 (529)
T ss_pred             HH
Confidence            53

>PHA02244 ATPase-like protein

Probab=89.19  E-value=2.2  Score=34.53  Aligned_cols=39  Identities=21%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             CcEEEEEeeCCC-----------CCCCHHHHhccccEEEcCCCCHHHHHHHH
Q psy15623         22 KSIVILGASNFP-----------WNIDDAFLRRLEKRIYVPLPSSSGRQELL   62 (133)
Q Consensus        22 ~~v~vi~aTn~~-----------~~lD~al~rRfd~~i~i~~P~~~~R~~il   62 (133)
                      +++-+|+|+|.+           ..+++|++.||- .|+++.|. +.-..|.
T Consensus       220 ~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~-~~E~~i~  269 (383)
T PHA02244        220 EDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDE-KIEHLIS  269 (383)
T ss_pred             CCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCc-HHHHHHh
Confidence            478999999973           678999999996 69999998 4444444

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=89.08  E-value=0.88  Score=35.83  Aligned_cols=53  Identities=21%  Similarity=0.239  Sum_probs=40.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL   64 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~   64 (133)
                      +.||..|+....        ++.+|.+|+.++.+.+.+.+|+. .+.|++|+.++-.+.|..
T Consensus       131 naLLk~LEep~~--------~~~~Ilvth~~~~ll~ti~SRc~-~~~~~~~~~~~~~~~L~~  183 (325)
T PRK08699        131 NSLLKVLEEPPP--------QVVFLLVSHAADKVLPTIKSRCR-KMVLPAPSHEEALAYLRE  183 (325)
T ss_pred             HHHHHHHHhCcC--------CCEEEEEeCChHhChHHHHHHhh-hhcCCCCCHHHHHHHHHh
Confidence            567777776642        45677789999999999888874 577888998887777653

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=88.84  E-value=0.86  Score=39.98  Aligned_cols=92  Identities=15%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             HHHHHHHhhCCC--CCCCC-CCCCcEEEEEeeCCC-------------------------CCCCHHHHhccccEEEcCCC
Q psy15623          2 KSELLCHMDGIA--STTNA-DPTKSIVILGASNFP-------------------------WNIDDAFLRRLEKRIYVPLP   53 (133)
Q Consensus         2 ~~~lL~~lD~~~--~~~~~-~~~~~v~vi~aTn~~-------------------------~~lD~al~rRfd~~i~i~~P   53 (133)
                      .+.||+.||.-.  ...+. -.-.++++|+|||..                         ..+.|.++.|+|.+|.|++.
T Consensus       574 ~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L  653 (758)
T PRK11034        574 FNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL  653 (758)
T ss_pred             HHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCC
Confidence            467888887321  11000 011378899999932                         23668999999999999999


Q ss_pred             CHHHHHHHHHHHHhc---------CCCC-ChhcHHHHHHHc--CCCCHHHHH
Q psy15623         54 SSSGRQELLRLILRQ---------VDLA-SDLDLELVSDQL--EGNAVQQKV   93 (133)
Q Consensus        54 ~~~~R~~il~~~~~~---------~~~~-~~~~~~~la~~t--~G~sgadi~   93 (133)
                      +.++..+|+..++..         +.+. ++.-++.|++..  ..+-++.|+
T Consensus       654 ~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~  705 (758)
T PRK11034        654 STDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMA  705 (758)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHH
Confidence            999999999887742         2222 333356676554  345566664

>PRK08485 DNA polymerase III subunit delta'; Validated

Probab=88.32  E-value=2.2  Score=31.59  Aligned_cols=73  Identities=18%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhcccc------------EEEcCCCCHHHHHHHHHHHHhcCC
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEK------------RIYVPLPSSSGRQELLRLILRQVD   70 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~------------~i~i~~P~~~~R~~il~~~~~~~~   70 (133)
                      |.||..++.        |..++++|.+|..+..+.|-+++|+..            .+.+..-+.++-.+.++. +.+..
T Consensus        72 NaLLK~LEE--------Pp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~  142 (206)
T PRK08485         72 NALLKILEE--------PPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKEN  142 (206)
T ss_pred             HHHHHHhcC--------CCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcc
Confidence            455555554        234778888888899999999998764            566777788888888888 34333


Q ss_pred             CC-ChhcHHHHHHHc
Q psy15623         71 LA-SDLDLELVSDQL   84 (133)
Q Consensus        71 ~~-~~~~~~~la~~t   84 (133)
                      .. ...-...|+...
T Consensus       143 ~~~~~ea~~lIa~la  157 (206)
T PRK08485        143 KLSKEELKELIESLL  157 (206)
T ss_pred             cccHHHHHHHHHHHH
Confidence            22 233334444444

>KOG2028|consensus

Probab=86.46  E-value=14  Score=30.39  Aligned_cols=97  Identities=16%  Similarity=0.235  Sum_probs=60.6

Q ss_pred             CcEEEEEeeCC--CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh---c-----CCCC------ChhcHHHHHHHcC
Q psy15623         22 KSIVILGASNF--PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR---Q-----VDLA------SDLDLELVSDQLE   85 (133)
Q Consensus        22 ~~v~vi~aTn~--~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~---~-----~~~~------~~~~~~~la~~t~   85 (133)
                      +.|.+||||.-  --.+..|+++|+-..+-=++| .+.-..||..-+.   +     .++.      ++.-++.|+..++
T Consensus       249 G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~-~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd  327 (554)
T KOG2028|consen  249 GDITLIGATTENPSFQLNAALLSRCRVFVLEKLP-VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD  327 (554)
T ss_pred             CceEEEecccCCCccchhHHHHhccceeEeccCC-HHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcC
Confidence            46888887743  446899999998655444444 4555566654322   1     1111      1223677899999


Q ss_pred             CCCHHHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHH
Q psy15623         86 GNAVQQKVMKSYTKKTFCGK-----NSTPSQPKLLQAER  119 (133)
Q Consensus        86 G~sgadi~~~~~~~~~~~~~-----~~~i~~~dl~~a~~  119 (133)
                      |=.-+-|.+++..+.+.+..     +..++.+|+.+++.
T Consensus       328 GDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq  366 (554)
T KOG2028|consen  328 GDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQ  366 (554)
T ss_pred             chHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHh
Confidence            87777776666655555533     33788888887753

>smart00763 AAA_PrkA PrkA AAA domain

Probab=84.97  E-value=1.6  Score=34.99  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=38.8

Q ss_pred             cEEEEEeeCCC-------CCCCHHHHhccccEEEcCCC-CHHHHHHHHHHHHhcC
Q psy15623         23 SIVILGASNFP-------WNIDDAFLRRLEKRIYVPLP-SSSGRQELLRLILRQV   69 (133)
Q Consensus        23 ~v~vi~aTn~~-------~~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~~~~   69 (133)
                      ..++|++||..       ....+|+++|+. .|++|.| +.++-.+|.+..+.+.
T Consensus       277 d~liia~sNe~e~~~~~~~k~~eaf~dR~~-~i~vpY~l~~~~E~~Iy~k~~~~s  330 (361)
T smart00763      277 DGLIIAHSNESEWQRFKSNKKNEALLDRII-KVKVPYCLRVSEEAQIYEKLLRNS  330 (361)
T ss_pred             ceEEEEeCCHHHHhhhhccccchhhhhceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence            46899999988       367899999999 8999988 7788889999888653

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=84.69  E-value=3.6  Score=32.03  Aligned_cols=50  Identities=18%  Similarity=0.107  Sum_probs=34.5

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELL   62 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il   62 (133)
                      |.||..|+.=        .+++++|..|+.++.|-|-+++|+. ++.|+. +.+.-.+++
T Consensus       122 NaLLKtLEEP--------p~~t~~iL~t~~~~~lLpTI~SRcq-~i~f~~-~~~~~~~~L  171 (290)
T PRK07276        122 NSLLKVIEEP--------QSEIYIFLLTNDENKVLPTIKSRTQ-IFHFPK-NEAYLIQLL  171 (290)
T ss_pred             HHHHHHhcCC--------CCCeEEEEEECChhhCchHHHHcce-eeeCCC-cHHHHHHHH
Confidence            4556666543        3467888999999999999999985 466755 444444444

>TIGR00368 Mg chelatase-related protein

Probab=84.63  E-value=23  Score=29.74  Aligned_cols=96  Identities=19%  Similarity=0.198  Sum_probs=56.8

Q ss_pred             CcEEEEEeeCCC-----C------------------CCCHHHHhccccEEEcCCCCHH-------------HHHHHHHHH
Q psy15623         22 KSIVILGASNFP-----W------------------NIDDAFLRRLEKRIYVPLPSSS-------------GRQELLRLI   65 (133)
Q Consensus        22 ~~v~vi~aTn~~-----~------------------~lD~al~rRfd~~i~i~~P~~~-------------~R~~il~~~   65 (133)
                      .++.+|++||.-     .                  .|...++.|||..++++.++.+             -|..+.+..
T Consensus       337 a~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar  416 (499)
T TIGR00368       337 ARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAR  416 (499)
T ss_pred             CCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHH
Confidence            378899999952     1                  4888899999999999976443             233333221


Q ss_pred             Hh------cC---CCCChhc-----------------HHHHHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHH
Q psy15623         66 LR------QV---DLASDLD-----------------LELVSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQA  117 (133)
Q Consensus        66 ~~------~~---~~~~~~~-----------------~~~la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a  117 (133)
                      -.      ..   .......                 ++..+. .-++|.+-...+...++.++  .+...+..+|+.+|
T Consensus       417 ~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~-~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA  495 (499)
T TIGR00368       417 EIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALN-KLGLSSRATHRILKVARTIADLKEEKNISREHLAEA  495 (499)
T ss_pred             HHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence            11      10   1111111                 111222 23577777765555554444  67778999999988


Q ss_pred             H
Q psy15623        118 E  118 (133)
Q Consensus       118 ~  118 (133)
                      +
T Consensus       496 ~  496 (499)
T TIGR00368       496 I  496 (499)
T ss_pred             H
Confidence            6

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>KOG1514|consensus

Probab=84.62  E-value=7.9  Score=33.88  Aligned_cols=105  Identities=15%  Similarity=0.154  Sum_probs=70.3

Q ss_pred             CCCcEEEEEeeCCCCCCCHHHHh-----ccc-cEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHH
Q psy15623         20 PTKSIVILGASNFPWNIDDAFLR-----RLE-KRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKV   93 (133)
Q Consensus        20 ~~~~v~vi~aTn~~~~lD~al~r-----Rfd-~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~   93 (133)
                      ++.+++||+..|.-+. ++.++-     |.. .+|.|.+=+.++-++|+..-+++...-.+.-++-+|++-...||.-=+
T Consensus       538 ~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRr  616 (767)
T KOG1514|consen  538 KNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARR  616 (767)
T ss_pred             CCCceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHH
Confidence            4568999999997554 444443     554 567787889999999999999876322233355556666656665444


Q ss_pred             H--HHHHHHHHhcCCC---------CCCHHHHHHHHHhhhhcc
Q psy15623         94 M--KSYTKKTFCGKNS---------TPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        94 ~--~~~~~~~~~~~~~---------~i~~~dl~~a~~~~~~s~  125 (133)
                      +  .|..+...+..+.         .++..|+.+|+.++-.+.
T Consensus       617 aldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~  659 (767)
T KOG1514|consen  617 ALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASP  659 (767)
T ss_pred             HHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhh
Confidence            3  5666666664443         488999999988776543

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=84.35  E-value=14  Score=30.07  Aligned_cols=96  Identities=23%  Similarity=0.201  Sum_probs=58.8

Q ss_pred             EEEEeeCC------------CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHH
Q psy15623         25 VILGASNF------------PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQ   91 (133)
Q Consensus        25 ~vi~aTn~------------~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgad   91 (133)
                      ++|.|||+            |+-|+..++.|.-. |...+-+.++-++|++.-.+...+. ++.-++.|++...--|-+=
T Consensus       322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllI-I~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRY  400 (450)
T COG1224         322 IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLI-ISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRY  400 (450)
T ss_pred             EEEEEcCCceeeecccCCcCCCCCCHhhhhheeE-EecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHH
Confidence            66777775            78888888887643 2333336788889998887654433 3444666766654333332


Q ss_pred             HHHHHHHHHH--HhcCCCCCCHHHHHHHHHhh
Q psy15623         92 KVMKSYTKKT--FCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        92 i~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~  121 (133)
                      -..+..-+..  ...+...+..+|++++.+-|
T Consensus       401 a~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF  432 (450)
T COG1224         401 AVQLLTPASIIAKRRGSKRVEVEDVERAKELF  432 (450)
T ss_pred             HHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence            2233222222  23456689999999996644

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=84.33  E-value=4  Score=31.30  Aligned_cols=59  Identities=15%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCC
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVD   70 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~   70 (133)
                      |.||.-++.        |.+++++|..|..+..|.|-+++|+. .+.++.|....-.+.+..++....
T Consensus       107 NALLKtLEE--------PP~~t~fILit~~~~~LLpTIrSRCq-~i~~~~p~~~~~~e~~~~~~~p~~  165 (263)
T PRK06581        107 NSCLKILED--------APKNSYIFLITSRAASIISTIRSRCF-KINVRSSILHAYNELYSQFIQPIA  165 (263)
T ss_pred             HHHHHhhcC--------CCCCeEEEEEeCChhhCchhHhhceE-EEeCCCCCHHHHHHHHHHhccccc
Confidence            455555554        33477888888889999999999986 477899988888888887776553

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=83.99  E-value=2  Score=38.14  Aligned_cols=72  Identities=17%  Similarity=0.223  Sum_probs=50.6

Q ss_pred             cEEEEEeeCCCCC-------------------------CCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC--------
Q psy15623         23 SIVILGASNFPWN-------------------------IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV--------   69 (133)
Q Consensus        23 ~v~vi~aTn~~~~-------------------------lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~--------   69 (133)
                      +.++|+|||....                         +.|.++.|+|..+.|.+++.+...+|+...+...        
T Consensus       708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~  787 (852)
T TIGR03346       708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERK  787 (852)
T ss_pred             CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            6789999998322                         3466777999999999999999999998877421        


Q ss_pred             -CCC-ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623         70 -DLA-SDLDLELVSDQL--EGNAVQQKVM   94 (133)
Q Consensus        70 -~~~-~~~~~~~la~~t--~G~sgadi~~   94 (133)
                       .+. ++.-++.|++..  ..+..+.|..
T Consensus       788 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~  816 (852)
T TIGR03346       788 ITLELSDAALDFLAEAGYDPVYGARPLKR  816 (852)
T ss_pred             CeecCCHHHHHHHHHhCCCCCCCchhHHH
Confidence             111 233356677663  2566777753

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR01128 holA DNA polymerase III, delta subunit

Probab=83.34  E-value=17  Score=27.41  Aligned_cols=74  Identities=9%  Similarity=0.115  Sum_probs=47.0

Q ss_pred             cccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         44 LEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        44 fd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      -...+++..|+..+...+++..++..+.. +...+..|+..++| ....+..-..-......+ ..++.+++...+.
T Consensus       102 ~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~-d~~~l~~el~KL~~~~~~-~~It~e~I~~~~~  176 (302)
T TIGR01128       102 NAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEG-NLLAIAQELEKLALYAPD-GKITLEDVEEAVS  176 (302)
T ss_pred             CeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc-HHHHHHHHHHHHHhhCCC-CCCCHHHHHHHHh
Confidence            45678889999999999999999877654 45557778877764 333332211111122223 3588888876654

subunit around DNA forming a DNA sliding clamp.

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=82.61  E-value=4.5  Score=31.53  Aligned_cols=53  Identities=13%  Similarity=0.048  Sum_probs=39.2

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL   64 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~   64 (133)
                      |.||..|+.-.+        .+++|..|+.++.|-|.+.+|+.. ++|++|+.++-.+.+..
T Consensus       108 NaLLK~LEEPp~--------~t~~il~~~~~~kll~TI~SRc~~-~~f~~l~~~~l~~~l~~  160 (299)
T PRK07132        108 NALLKTIEEPPK--------DTYFLLTTKNINKVLPTIVSRCQV-FNVKEPDQQKILAKLLS  160 (299)
T ss_pred             HHHHHHhhCCCC--------CeEEEEEeCChHhChHHHHhCeEE-EECCCCCHHHHHHHHHH
Confidence            456666665443        567777777889999999888765 88988888877766654

>PRK10865 protein disaggregation chaperone; Provisional

Probab=82.56  E-value=2.9  Score=37.20  Aligned_cols=46  Identities=15%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             cEEEEEeeCCCC-------------------------CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623         23 SIVILGASNFPW-------------------------NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ   68 (133)
Q Consensus        23 ~v~vi~aTn~~~-------------------------~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~   68 (133)
                      +.++|+|||...                         .+.|+++.|+|..+.|.+++.+....|++.++..
T Consensus       711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~  781 (857)
T PRK10865        711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR  781 (857)
T ss_pred             ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence            467899999731                         2457888999999999999999999999888854

>CHL00095 clpC Clp protease ATP binding subunit

Probab=82.50  E-value=4  Score=36.11  Aligned_cols=56  Identities=16%  Similarity=0.196  Sum_probs=39.3

Q ss_pred             HHHHhccccEEEcCCCCHHHHHHHHHHHHhcC-------C--CC-ChhcHHHHHHHc--CCCCHHHHH
Q psy15623         38 DAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------D--LA-SDLDLELVSDQL--EGNAVQQKV   93 (133)
Q Consensus        38 ~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~-------~--~~-~~~~~~~la~~t--~G~sgadi~   93 (133)
                      |.++.|+|.+|.|.+.+.++-.+|++..+.+.       +  +. ++.-.+.|++..  ..|-++.|.
T Consensus       704 peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~  771 (821)
T CHL00095        704 PEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLR  771 (821)
T ss_pred             HHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHH
Confidence            56777999999999999999999998887542       1  11 223356677763  345566664

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=81.79  E-value=2.6  Score=36.86  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHH
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL   66 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~   66 (133)
                      ++|++|+|.|..+.|+..++.|.+ .|+++==..++..+|-+.|+
T Consensus       465 S~VmFiaTANsl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~L  508 (782)
T COG0466         465 SKVMFIATANSLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHL  508 (782)
T ss_pred             hheEEEeecCccccCChHHhccee-eeeecCCChHHHHHHHHHhc
Confidence            479999999999999999999997 47887778899999999888

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=81.37  E-value=12  Score=33.34  Aligned_cols=58  Identities=17%  Similarity=0.162  Sum_probs=40.9

Q ss_pred             CCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC--------CCC---ChhcHHHHHHHcCC--CCHHHHHH
Q psy15623         36 IDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV--------DLA---SDLDLELVSDQLEG--NAVQQKVM   94 (133)
Q Consensus        36 lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~--------~~~---~~~~~~~la~~t~G--~sgadi~~   94 (133)
                      +.|+++.|++ .|.|.+.+.++-.+|+...+...        ++.   ++.-++.|++...+  |-++.|..
T Consensus       751 f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r  821 (852)
T TIGR03345       751 FKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDA  821 (852)
T ss_pred             ccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHH
Confidence            5577788998 89999999999999998877442        221   23335677877743  56777753

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
2zam_A	444	Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt		4e-11
2qp9_X	355	Crystal Structure Of S.Cerevisiae Vps4 Length = 355		2e-10
3eih_A	340	Crystal Structure Of S.Cerevisiae Vps4 In The Prese		2e-10
3eie_A	322	Crystal Structure Of S.Cerevisiae Vps4 In The So4-B		2e-10
2rko_A	331	Crystal Structure Of The Vps4p-Dimer Length = 331		2e-10
1xwi_A	322	Crystal Structure Of Vps4b Length = 322		3e-10
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		2e-09
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		3e-09
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		3e-09
3d8b_A	357	Crystal Structure Of Human Fidgetin-Like Protein 1		5e-09
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		8e-09
3b9p_A	297	Spastin Length = 297		2e-08
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		7e-08
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		8e-08
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		8e-08
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		9e-08
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		1e-07
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		2e-07
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		2e-07
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		2e-07
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		2e-07
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		2e-07
2ce7_A	476	Edta Treated Length = 476		2e-07
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		7e-07
3vfd_A	389	Human Spastin Aaa Domain Length = 389		1e-06
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		6e-06
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		1e-05
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		4e-04

>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+E L  M G+    +      I++LGA+N PW +D A  RR EKRIY+PLP +  R  
Sbjct: 254 IKTEFLVQMQGVGVDNDG-----ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAA 308
Query: 61  LLRLIL 66
           + RL L
Sbjct: 309 MFRLHL 314

>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+ELL  M+G+ + +     + +++LGA+N PW +D A  RR E+RIY+PLP  + R  
Sbjct: 170 IKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 224
Query: 61  LLRL 64
           +  +
Sbjct: 225 MFEI 228

>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+ELL  M+G+ + +     + +++LGA+N PW +D A  RR E+RIY+PLP  + R  
Sbjct: 155 IKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 209
Query: 61  LLRL 64
           +  +
Sbjct: 210 MFEI 213

>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+ELL  M+G+ + +     + +++LGA+N PW +D A  RR E+RIY+PLP  + R  
Sbjct: 137 IKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 191
Query: 61  LLRL 64
           +  +
Sbjct: 192 MFEI 195

>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+ELL  M+G+ + +     + +++LGA+N PW +D A  RR E+RIY+PLP  + R  
Sbjct: 146 IKTELLVQMNGVGNDS-----QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 200
Query: 61  LLRL 64
           +  +
Sbjct: 201 MFEI 204

>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+E L  M G+    +      I++LGA+N PW +D A  RR EKRIY+PLP    R  
Sbjct: 132 IKTEFLVQMQGVGVDNDG-----ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAA 186
Query: 61  LLRLIL 66
           + +L L
Sbjct: 187 MFKLHL 192

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           +++L  MDG+++  N      + I+GA+N P  ID A LR  RL++ IY+PLP    R  
Sbjct: 140 NQILTEMDGMSTKKN------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 193
Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +L+  LR+  +A D+DLE ++    G
Sbjct: 194 ILKANLRKSPVAKDVDLEFLAKMTNG 219

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           +++L  MDG+++  N      + I+GA+N P  ID A LR  RL++ IY+PLP    R  
Sbjct: 602 NQILTEMDGMSTKKN------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655
Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +L+  LR+  +A D+DLE ++    G
Sbjct: 656 ILKANLRKSPVAKDVDLEFLAKMTNG 681

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           +++L  MDG+++  N      + I+GA+N P  ID A LR  RL++ IY+PLP    R  
Sbjct: 602 NQILTEMDGMSTKKN------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655
Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +L+  LR+  +A D+DLE ++    G
Sbjct: 656 ILKANLRKSPVAKDVDLEFLAKMTNG 681

>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 56/84 (66%), Gaps = 5/84 (5%)
Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+E L  +DG A+T++ D    I+++GA+N P  ID+A  RRL KR+Y+PLP +S R++
Sbjct: 203 IKTEFLVQLDG-ATTSSED---RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 258
Query: 61  L-LRLILRQVDLASDLDLELVSDQ 83
           + + L+ ++    S+ ++E +  Q
Sbjct: 259 IVINLMSKEQCCLSEEEIEQIVQQ 282

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           +LL  MDG       D    + I+GA+N P  +D A LR  R ++ I VP P   GR E+
Sbjct: 143 QLLAEMDGF------DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEI 196
Query: 62  LRLILRQVDLASDLDLELVSDQLEG 86
           L++  R+++LA D++LE ++   EG
Sbjct: 197 LKIHTRKMNLAEDVNLEEIAKMTEG 221

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+E L   DG+    + D    IV+L A+N P  +D+A LRR  KR+YV LP    R+ 
Sbjct: 140 LKTEFLVEFDGLPGNPDGD---RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTREL 196
Query: 61  LL-RLILRQVDLASDLDLE 78
           LL RL+ +Q    S LD E
Sbjct: 197 LLNRLLQKQ---GSPLDTE 212

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           S+LL  MDG+    +      ++++ A+N P +ID A  R  R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61  LLRLILRQVDLASDLDLELVSDQLEGN 87
           +L++  + + LA D+DLE V+++  G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           S+LL  MDG+    +      ++++ A+N P +ID A  R  R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61  LLRLILRQVDLASDLDLELVSDQLEGN 87
           +L++  + + LA D+DLE V+++  G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           S+LL  MDG+    +      ++++ A+N P +ID A  R  R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61  LLRLILRQVDLASDLDLELVSDQLEGN 87
           +L++  + + LA D+DLE V+++  G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 8/87 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           S+LL  MDG+    +      ++++ A+N P +ID A  R  R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGLKQRAH------VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 61  LLRLILRQVDLASDLDLELVSDQLEGN 87
           +L++  + + LA D+DLE V+++  G+
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGH 406

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDG    T      +IV++ A+N P  +D A LR  R +++I +  P   GR++
Sbjct: 164 NQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 217
Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +LR+  R   LA D+DL L++ +  G
Sbjct: 218 ILRIHARGKPLAEDVDLALLAKRTPG 243

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDG    T      +IV++ A+N P  +D A LR  R +++I +  P   GR++
Sbjct: 140 NQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 193
Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +LR+  R   LA D+DL L++ +  G
Sbjct: 194 ILRIHARGKPLAEDVDLALLAKRTPG 219

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDG    T      +IV++ A+N P  +D A LR  R +++I +  P   GR++
Sbjct: 164 NQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 217
Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +LR+  R   LA D+DL L++ +  G
Sbjct: 218 ILRIHARGKPLAEDVDLALLAKRTPG 243

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 8/81 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           +++L  MDG       +  + I+++ A+N P  +D A LR  R ++++ V LP   GR++
Sbjct: 136 NQMLVEMDGF------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 61  LLRLILRQVDLASDLDLELVS 81
           +L++ +R+V LA D+D  +++
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIA 210

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDG    T      +IV++ A+N P  +D A LR  R +++I +  P   GR++
Sbjct: 155 NQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 208
Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +LR+  R   LA D+DL L++ +  G
Sbjct: 209 ILRIHARGKPLAEDVDLALLAKRTPG 234

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDG       D  + I+++ A+N P  +D A LR  R +K+I V  P   GR++
Sbjct: 140 NQLLVEMDGF------DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +L +  R   LA D++LE+++ +  G
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPG 219

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDG       D  + I+++ A+N P  +D A LR  R +K+I V  P   GR++
Sbjct: 140 NQLLVEMDGF------DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +L +  R   LA D++LE+++ +  G
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPG 219

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDG  S         +++L A+N P  +D A +R  R ++++ V  P  +GR E
Sbjct: 136 NQLLAEMDGFGSEN-----APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVE 190
Query: 61  LLRLILRQVDLASDLDLELVS 81
           +L++ ++ V LA+D++L+ V+
Sbjct: 191 ILKVHIKGVKLANDVNLQEVA 211

>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGR 58
           +K+E L   DG+ S  +      ++++GA+N P  +D+A LRR  KR+YV LP+   R
Sbjct: 234 LKTEFLIEFDGVQSAGD----DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETR 287

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           ELL  MDG     N   TK   I+ A+N P  +D A LR  RL++++ +PLP+ +GR E+
Sbjct: 307 ELLTQMDGF---DNLGQTK---IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEI 360
Query: 62  LRLILRQVDLASDLDLEL---VSDQLEGNAVQ 90
            ++   +V    + D E    +SD   G  ++
Sbjct: 361 FKIHTAKVKKTGEFDFEAAVKMSDGFNGADIR 392

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           ELL  +DG  ++ N      I I+ A+N    +D A LR  R++++I  P PS + R E+
Sbjct: 274 ELLNQLDGFETSKN------IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEI 327
Query: 62  LRLILRQVDLASDLDLELVSDQLEG 86
           LR+  R+++L   ++L  V++++ G
Sbjct: 328 LRIHSRKMNLTRGINLRKVAEKMNG 352

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           EL+  +DG       DP  +I ++ A+N P  +D A LR  R+++++   LP   GR  +
Sbjct: 335 ELITQLDGF------DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANI 388
Query: 62  LRLILRQVDLASDLDLELVS 81
            R+  + + +   +  EL+S
Sbjct: 389 FRIHSKSMSVERGIRWELIS 408

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	1e-28
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	2e-27
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	3e-27
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	4e-27
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	4e-27
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	2e-26
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	8e-26
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-19
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-13
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-18
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	5e-15
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	5e-14
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	2e-13
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	3e-10
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	5e-10
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	5e-10
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	5e-10
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	6e-10
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	2e-08
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	3e-08
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	7e-08
2krk_A	86	26S protease regulatory subunit 8; structural geno	2e-04

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score =  104 bits (262), Expect = 1e-28
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+E L   DG+    + D    IV+L A+N P  +D+A LRR  KR+YV LP    R+ 
Sbjct: 140 LKTEFLVEFDGLPGNPDGD---RIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTREL 196

Query: 61  LLRLILRQVDLA-SDLDLELVSDQLEG 86
           LL  +L++         L  ++   +G
Sbjct: 197 LLNRLLQKQGSPLDTEALRRLAKITDG 223

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score =  102 bits (257), Expect = 2e-27
 Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+E L  +DG  +         I+++GA+N P  ID+A  RRL KR+Y+PLP +S R++
Sbjct: 203 IKTEFLVQLDGATT----SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 258

Query: 61  LLRLIL-RQVDLASDLDLELVSDQLEG 86
           ++  ++ ++    S+ ++E +  Q + 
Sbjct: 259 IVINLMSKEQCCLSEEEIEQIVQQSDA 285

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score =  101 bits (254), Expect = 3e-27
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+E L  M G+           I++LGA+N PW +D A  RR EKRIY+PLP    R  
Sbjct: 132 IKTEFLVQMQGVGVDN-----DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAA 186

Query: 61  LLRLILRQVDLA-SDLDLELVSDQLEG 86
           + +L L     + ++ D   +  + +G
Sbjct: 187 MFKLHLGTTQNSLTEADFRELGRKTDG 213

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score =  102 bits (256), Expect = 4e-27
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+E L   DG+ S         ++++GA+N P  +D+A LRR  KR+YV LP+   R  
Sbjct: 234 LKTEFLIEFDGVQS----AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289

Query: 61  LLRLILRQVD-LASDLDLELVSDQLEG 86
           LL+ +L +     +  +L  ++   +G
Sbjct: 290 LLKNLLCKQGSPLTQKELAQLARMTDG 316

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score =  101 bits (253), Expect = 4e-27
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+ELL  M+G+ +      ++ +++LGA+N PW +D A  RR E+RIY+PLP  + R  
Sbjct: 137 IKTELLVQMNGVGN-----DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 191

Query: 61  LLRLILRQV-DLASDLDLELVSDQLEG 86
           +  + +     + +  D   +    EG
Sbjct: 192 MFEINVGDTPCVLTKEDYRTLGAMTEG 218

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score =  100 bits (250), Expect = 2e-26
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+ELL  M+G+ +      ++ +++LGA+N PW +D A  RR E+RIY+PLP  + R  
Sbjct: 170 IKTELLVQMNGVGN-----DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 224

Query: 61  LLRLILRQV-DLASDLDLELVSDQLEG 86
           +  + +     + +  D   +    EG
Sbjct: 225 MFEINVGDTPSVLTKEDYRTLGAMTEG 251

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score = 99.3 bits (247), Expect = 8e-26
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQE 60
           +K+E L  M G+           I++LGA+N PW +D A  RR EKRIY+PLP +  R  
Sbjct: 254 IKTEFLVQMQGVGVDN-----DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAA 308

Query: 61  LLRLILRQVDLA-SDLDLELVSDQLEG 86
           + RL L     + ++ D + +  + +G
Sbjct: 309 MFRLHLGSTQNSLTEADFQELGRKTDG 335

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 8/86 (9%)

Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           +++L  MDG+         K++ I+GA+N P  ID A LR  RL++ IY+PLP    R  
Sbjct: 140 NQILTEMDGM------STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 193

Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +L+  LR+  +A D+DLE ++    G
Sbjct: 194 ILKANLRKSPVAKDVDLEFLAKMTNG 219

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score = 68.4 bits (168), Expect = 5e-15
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 11/87 (12%)

Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           ++LL  MDG+      +  + + I+ A+N P  ID A LR  RL+K ++V LP  + R  
Sbjct: 132 NQLLTEMDGL------EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185

Query: 61  LLRLILRQVD---LASDLDLELVSDQL 84
           +L+ I +      L +D++LE ++  L
Sbjct: 186 ILKTITKNGTKPPLDADVNLEAIAGDL 212

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 65.4 bits (160), Expect = 5e-14
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 8/85 (9%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           +LL  MDG       D    + I+GA+N P  +D A LR  R ++ I VP P   GR E+
Sbjct: 143 QLLAEMDGF------DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEI 196

Query: 62  LRLILRQVDLASDLDLELVSDQLEG 86
           L++  R+++LA D++LE ++   EG
Sbjct: 197 LKIHTRKMNLAEDVNLEEIAKMTEG 221

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 8/86 (9%)

Query: 3   SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQE 60
           S+LL  MDG+           ++++ A+N P +ID A  R  R ++ + + +P ++GR E
Sbjct: 326 SQLLTLMDGL------KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379

Query: 61  LLRLILRQVDLASDLDLELVSDQLEG 86
           +L++  + + LA D+DLE V+++  G
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHG 405

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 8/85 (9%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           ++L  MDG       +  + I+++ A+N P  +D A LR  R ++++ V LP   GR+++
Sbjct: 137 QMLVEMDGF------EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 190

Query: 62  LRLILRQVDLASDLDLELVSDQLEG 86
           L++ +R+V LA D+D  +++    G
Sbjct: 191 LKVHMRRVPLAPDIDAAIIARGTPG 215

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 7/85 (8%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           +LL  MDG  S         +++L A+N P  +D A +R  R ++++ V  P  +GR E+
Sbjct: 137 QLLAEMDGFGS-----ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEI 191

Query: 62  LRLILRQVDLASDLDLELVSDQLEG 86
           L++ ++ V LA+D++L+ V+    G
Sbjct: 192 LKVHIKGVKLANDVNLQEVAKLTAG 216

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           +LL  MDG       +   +IV++ A+N P  +D A LR  R +++I +  P   GR+++
Sbjct: 141 QLLVEMDGF------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194

Query: 62  LRLILRQVDLASDLDLELVSDQLEG 86
           LR+  R   LA D+DL L++ +  G
Sbjct: 195 LRIHARGKPLAEDVDLALLAKRTPG 219

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 5   LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELL 62
           LL  MDG+ +T +      +++L ++N    +D A +R  RL++ +++ LP+   R+E+ 
Sbjct: 133 LLVEMDGMGTTDH------VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIF 186

Query: 63  RLILRQVDLASDLDL 77
              L+ + L      
Sbjct: 187 EQHLKSLKLTQSSTF 201

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 54.3 bits (131), Expect = 6e-10
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 4   ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQEL 61
           +LL  MDG       +   +IV++ A+N P  +D A LR  R +++I +  P   GR+++
Sbjct: 165 QLLVEMDGF------EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218

Query: 62  LRLILRQVDLASDLDLELVSDQLEG 86
           LR+  R   LA D+DL L++ +  G
Sbjct: 219 LRIHARGKPLAEDVDLALLAKRTPG 243

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 5   LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELL 62
           LL  MDG    T       IV++ A+N P  +D A LR  R +++I +  P   GR+++L
Sbjct: 157 LLVEMDGFEKDTA------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL 210

Query: 63  RLILRQVDLASDLDLELV 80
           R+  R   LA D+DL L+
Sbjct: 211 RIHARGKPLAEDVDLALL 228

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 5   LLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELL 62
           LL  MDG  S         I+++ A+N P  +D A LR  R +K+I V  P   GR+++L
Sbjct: 142 LLVEMDGFDSKEG------IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKIL 195

Query: 63  RLILRQVDLASDLDLELV 80
            +  R   LA D++LE++
Sbjct: 196 EIHTRNKPLAEDVNLEII 213

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score = 48.7 bits (116), Expect = 7e-08
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 11/80 (13%)

Query: 9   MDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLIL 66
           + G+    N      + I+   N    +    +R  R+EK  + P      R  +   I 
Sbjct: 144 LPGM---YNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR--EDRIGVCTGIF 198

Query: 67  RQVDLASDLDLELVSDQLEG 86
           R      ++  E V   ++ 
Sbjct: 199 R----TDNVPAEDVVKIVDN 214

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86

 Score = 36.7 bits (86), Expect = 2e-04
 Identities = 7/39 (17%), Positives = 22/39 (56%)

Query: 48 IYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEG 86
           +   P+   R ++L++  R+++L   ++L  +++ + G
Sbjct: 6  HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.96
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.96
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.95
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.95
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.95
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.92
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.87
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.86
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.85
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.83
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.82
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.81
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.81
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.8
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.79
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.78
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.77
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.76
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.76
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.74
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.71
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.71
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.7
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.7
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.68
3kw6_A	78	26S protease regulatory subunit 8; structural geno	99.66
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.63
2krk_A	86	26S protease regulatory subunit 8; structural geno	99.62
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	99.55
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	99.51
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.36
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	99.34
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.32
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.74
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.74
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.71
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.68
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	98.61
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.58
2r44_A	331	Uncharacterized protein; putative ATPase, structur	98.54
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	98.54
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.53
3bos_A	242	Putative DNA replication factor; P-loop containing	98.53
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	98.48
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.47
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.42
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.4
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.38
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.38
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.35
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.26
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.22
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	98.21
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.2
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.18
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.16
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.07
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.04
3pvs_A	447	Replication-associated recombination protein A; ma	98.03
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.02
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.0
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.0
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.97
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.97
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.88
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.83
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.81
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.74
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.71
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.49
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.44
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.44
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.33
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.3
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.23
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.06
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	96.94
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.68
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.62
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.34
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.33
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.31
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.75
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.62
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.4
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	95.31
3f8t_A	506	Predicted ATPase involved in replication control,	94.92
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.52
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.13
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	92.52
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	86.02
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	82.95

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-28  Score=195.46  Aligned_cols=116  Identities=25%  Similarity=0.345  Sum_probs=106.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||++|||+.+..      +|+||||||+|+.||||++|  |||++|+|++|+.++|.+||+.++++.++..++|++.
T Consensus       272 l~~lL~~lDg~~~~~------~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~  345 (405)
T 4b4t_J          272 MLELLNQLDGFETSK------NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRK  345 (405)
T ss_dssp             HHHHHHHHHTTTCCC------CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHH
T ss_pred             HHHHHHhhhccCCCC------CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHH
Confidence            689999999998876      99999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRR  123 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~  123 (133)
                      ||+.|+|||||||.++|..+.+  +..++..++.+||..|++.+.+
T Consensus       346 lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~  391 (405)
T 4b4t_J          346 VAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMN  391 (405)
T ss_dssp             HHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence            9999999999999987766655  4467778999999999886644

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-28  Score=197.45  Aligned_cols=125  Identities=22%  Similarity=0.339  Sum_probs=111.2

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||++|||+.+.+      +|+||||||+|+.||||++|  |||++|+|++|+.++|.+||+.+++++++..++|++.
T Consensus       305 ~~~lL~~ldg~~~~~------~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~  378 (434)
T 4b4t_M          305 MLELLNQLDGFSSDD------RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQE  378 (434)
T ss_dssp             HHHHHHHHTTSCSSC------SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHH
T ss_pred             HHHHHHHhhccCCCC------CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHH
Confidence            578999999998876      99999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhcccccccCCC
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRSRVLLFTGYY  133 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s~~~~~~~~~  133 (133)
                      ||+.|+|||||||.++|..+..  +..++..++.+||.+|++.+++++--. .+||
T Consensus       379 lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~~~~-i~~Y  433 (434)
T 4b4t_M          379 LARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKS-VSFY  433 (434)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSCCCC-CCCC
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCCCcC-cccc
Confidence            9999999999999987766555  446777899999999999887764322 3566

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.9e-28  Score=193.67  Aligned_cols=126  Identities=19%  Similarity=0.300  Sum_probs=110.9

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||++||++.+..      +|+||||||+|+.||||++|  |||++|+|++|+.++|.+||+.+++++++..++|++.
T Consensus       306 l~~LL~~lDg~~~~~------~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~  379 (437)
T 4b4t_I          306 MLELLNQLDGFDDRG------DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLET  379 (437)
T ss_dssp             HHHHHHHHHHCCCSS------SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHH
T ss_pred             HHHHHHHhhCcCCCC------CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHH
Confidence            578999999998876      99999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhccc-ccccCCC
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRSRV-LLFTGYY  133 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s~~-~~~~~~~  133 (133)
                      ||+.|+|||||||.++|..+.+  +..++..++.+||..|++.+.++.. =...|+|
T Consensus       380 LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~e~le~lY  436 (437)
T 4b4t_I          380 LVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLY  436 (437)
T ss_dssp             HHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCCCSSSSCC
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCChhhHHhhc
Confidence            9999999999999987766655  4467778999999999988776532 2234555

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.2e-28  Score=193.81  Aligned_cols=119  Identities=24%  Similarity=0.360  Sum_probs=108.2

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||++|||+.+..      +|+||+|||+|+.||||++|  |||++|+|++|+.++|.+||+.++++++...++|+..
T Consensus       305 l~~lL~~lDg~~~~~------~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~  378 (437)
T 4b4t_L          305 LMELLTQMDGFDNLG------QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEA  378 (437)
T ss_dssp             HHHHHHHHHSSSCTT------SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHH
T ss_pred             HHHHHHHhhcccCCC------CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHH
Confidence            578999999998876      89999999999999999999  8999999999999999999999999999888999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhccc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRSRV  126 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s~~  126 (133)
                      ||+.|+|||||||.++|..+..  +..+...++.+||..|++.+.+++.
T Consensus       379 lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k  427 (437)
T 4b4t_L          379 AVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK  427 (437)
T ss_dssp             HHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999987765554  4567778999999999998877654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.4e-27  Score=190.90  Aligned_cols=127  Identities=22%  Similarity=0.264  Sum_probs=111.2

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcC-CCCHHHHHHHHHHHHhcCCCCChhcH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVP-LPSSSGRQELLRLILRQVDLASDLDL   77 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~-~P~~~~R~~il~~~~~~~~~~~~~~~   77 (133)
                      ++++||++|||+.+..      +|+||||||+|+.||||++|  |||++|+|| +|+.++|..||+.+++++++..++|+
T Consensus       295 ~l~~lL~~ldg~~~~~------~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl  368 (428)
T 4b4t_K          295 ILIELLTQMDGFDQST------NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL  368 (428)
T ss_dssp             HHHHHHHHHHHSCSSC------SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH
T ss_pred             HHHHHHHHhhCCCCCC------CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH
Confidence            3689999999998876      89999999999999999999  999999996 89999999999999999999899999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHh-hhhcccccccCCC
Q psy15623         78 ELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERP-FRRSRVLLFTGYY  133 (133)
Q Consensus        78 ~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~-~~~s~~~~~~~~~  133 (133)
                      +.||+.|+|||||||.++|..+..  +..++..++.+||.+|++. .+++...-.-.||
T Consensus       369 ~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~~~~~~~~d~y  427 (428)
T 4b4t_K          369 DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDFY  427 (428)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence            999999999999999987766554  4567788999999999875 4555555444566

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.3e-27  Score=188.56  Aligned_cols=116  Identities=20%  Similarity=0.340  Sum_probs=105.6

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||++||++.+..      +|+||||||+|+.||||++|  |||++|+|++|+.++|.+||+.+++++++..++|++.
T Consensus       333 l~~lL~~lDg~~~~~------~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~  406 (467)
T 4b4t_H          333 MLELITQLDGFDPRG------NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWEL  406 (467)
T ss_dssp             HHHHHHHHHSSCCTT------TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHH
T ss_pred             HHHHHHHhhccCCCC------cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence            578999999998876      99999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRR  123 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~  123 (133)
                      ||+.|+|||||||.++|..+..  +..++..++.+||+.|++.+..
T Consensus       407 LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~  452 (467)
T 4b4t_H          407 ISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS  452 (467)
T ss_dssp             HHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhc
Confidence            9999999999999987766554  4467788999999999886543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.92  E-value=6.5e-27  Score=198.55  Aligned_cols=118  Identities=31%  Similarity=0.448  Sum_probs=72.7

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE   78 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~   78 (133)
                      ++|+||++|||+.+..      +|+||||||+||.||||++|  |||++|+|++|+.++|.+||+.++++.++..++|++
T Consensus       600 v~~~lL~~mdg~~~~~------~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~  673 (806)
T 3cf2_A          600 VINQILTEMDGMSTKK------NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE  673 (806)
T ss_dssp             HHHHHHHHHHSSCSSS------SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----
T ss_pred             HHHHHHHHHhCCCCCC------CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHH
Confidence            4799999999998876      89999999999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHhc---------------------------CCCCCCHHHHHHHHHhhhhc
Q psy15623         79 LVSDQLEGNAVQQKVMKSYTKKTFCG---------------------------KNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        79 ~la~~t~G~sgadi~~~~~~~~~~~~---------------------------~~~~i~~~dl~~a~~~~~~s  124 (133)
                      .||+.|+||||+||.++|..+.+.+.                           ....++.+||++|++..++|
T Consensus       674 ~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pS  746 (806)
T 3cf2_A          674 FLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS  746 (806)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC------
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCC
Confidence            99999999999999877666544321                           01358889999998888776

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.87  E-value=5.6e-22  Score=150.06  Aligned_cols=117  Identities=27%  Similarity=0.387  Sum_probs=99.6

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhc---CCCCChhc
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQ---VDLASDLD   76 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~---~~~~~~~~   76 (133)
                      +++++.+|||.....      .++++++||+|+.||+|++|  |||+.|++++|+.++|.+||+.++++   .+...+++
T Consensus       131 ~~~~l~~Lsgg~~~~------~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~  204 (274)
T 2x8a_A          131 VNQLLTEMDGLEARQ------QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVN  204 (274)
T ss_dssp             HHHHHHHHHTCCSTT------CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCC
T ss_pred             HHHHHHhhhcccccC------CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccC
Confidence            578999999998765      89999999999999999999  99999999999999999999999954   45567899


Q ss_pred             HHHHHHHc--CCCCHHHHHHHHHHHHHHhc-------------CCCCCCHHHHHHHHHhhhhc
Q psy15623         77 LELVSDQL--EGNAVQQKVMKSYTKKTFCG-------------KNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        77 ~~~la~~t--~G~sgadi~~~~~~~~~~~~-------------~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ++.+|..|  +||||+||..+|..+...+.             +...++.+||.+|++.+++|
T Consensus       205 ~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps  267 (274)
T 2x8a_A          205 LEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS  267 (274)
T ss_dssp             HHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCC
T ss_pred             HHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCC
Confidence            99999975  59999999877665544221             23479999999999998886

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.86  E-value=1.4e-22  Score=172.09  Aligned_cols=119  Identities=24%  Similarity=0.378  Sum_probs=103.8

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLE   78 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~   78 (133)
                      ++++||++||++.++.      +|+||+|||+|+.||||++|  |||++|++++|+.++|.+||+.++++.++..++|+.
T Consensus       324 iv~~LL~~mdg~~~~~------~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~  397 (806)
T 3cf2_A          324 IVSQLLTLMDGLKQRA------HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLE  397 (806)
T ss_dssp             HHHHHHTHHHHCCGGG------CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHH
T ss_pred             HHHHHHHHHhcccccC------CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHH
Confidence            4789999999998876      89999999999999999999  999999999999999999999999999888999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHhc-------------------CCCCCCHHHHHHHHHhhhhcc
Q psy15623         79 LVSDQLEGNAVQQKVMKSYTKKTFCG-------------------KNSTPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        79 ~la~~t~G~sgadi~~~~~~~~~~~~-------------------~~~~i~~~dl~~a~~~~~~s~  125 (133)
                      .||++|+||||+||..++..+...+.                   ....++.+||..|++.++++.
T Consensus       398 ~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~  463 (806)
T 3cf2_A          398 QVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA  463 (806)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence            99999999999999877655543221                   113467889999998887753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=145.90  Aligned_cols=94  Identities=31%  Similarity=0.603  Sum_probs=83.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV   80 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l   80 (133)
                      +++||.+||++...     ..+|+||+|||+|+.+|++++|||+..+++++|+.++|.+||+.++++.+.. .+.++..|
T Consensus       133 ~~~ll~~ld~~~~~-----~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~l  207 (322)
T 1xwi_A          133 KTEFLVQMQGVGVD-----NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFREL  207 (322)
T ss_dssp             HHHHHHHHHCSSSC-----CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHH
T ss_pred             HHHHHHHHhccccc-----CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            67899999998642     2389999999999999999999999999999999999999999999887654 68899999


Q ss_pred             HHHcCCCCHHHHHHHHHHHH
Q psy15623         81 SDQLEGNAVQQKVMKSYTKK  100 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~  100 (133)
                      |+.|+||||+||..+|..+.
T Consensus       208 a~~t~G~sgadl~~l~~~A~  227 (322)
T 1xwi_A          208 GRKTDGYSGADISIIVRDAL  227 (322)
T ss_dssp             HHTCTTCCHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHH
Confidence            99999999999987655443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.83  E-value=2.8e-20  Score=141.88  Aligned_cols=117  Identities=31%  Similarity=0.447  Sum_probs=100.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||..||++....      +|+||+|||+|+.||++++|  ||+..+++++|+.++|.+||+.++++.++..++++..
T Consensus       139 ~~~lL~~l~~~~~~~------~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~  212 (301)
T 3cf0_A          139 INQILTEMDGMSTKK------NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF  212 (301)
T ss_dssp             HHHHHHHHHSSCTTS------SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHH
T ss_pred             HHHHHHHhhcccCCC------CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHH
Confidence            578999999987655      89999999999999999999  9999999999999999999999999888778899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhc---------------------------CCCCCCHHHHHHHHHhhhhc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFCG---------------------------KNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~~---------------------------~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ++..|+||||+||.+++..+...+.                           ....++.+||..|++..++|
T Consensus       213 la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s  284 (301)
T 3cf0_A          213 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS  284 (301)
T ss_dssp             HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence            9999999999999865544333210                           01468999999999988775

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.82  E-value=7.4e-20  Score=142.69  Aligned_cols=118  Identities=26%  Similarity=0.480  Sum_probs=99.1

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV   80 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l   80 (133)
                      +++||.+||++...     ..+|+||+|||+|+.||++++|||+..+++++|+.++|.+||+.++++.+.. .+.++..|
T Consensus       171 ~~~ll~~l~~~~~~-----~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~l  245 (355)
T 2qp9_X          171 KTELLVQMNGVGND-----SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTL  245 (355)
T ss_dssp             HHHHHHHHHHCC--------CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHH
T ss_pred             HHHHHHHhhccccc-----CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence            57899999998642     2389999999999999999999999999999999999999999999887654 68899999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHhc---------------------------------------------CCCCCCHHHHH
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTFCG---------------------------------------------KNSTPSQPKLL  115 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~~~---------------------------------------------~~~~i~~~dl~  115 (133)
                      |+.|+||||+||..+|..+...+.                                             ....++.+||.
T Consensus       246 a~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~  325 (355)
T 2qp9_X          246 GAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFL  325 (355)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHH
Confidence            999999999999876554433210                                             12358999999


Q ss_pred             HHHHhhhhc
Q psy15623        116 QAERPFRRS  124 (133)
Q Consensus       116 ~a~~~~~~s  124 (133)
                      .|++.+++|
T Consensus       326 ~Al~~~~ps  334 (355)
T 2qp9_X          326 KAIKSTRPT  334 (355)
T ss_dssp             HHHHHSCCS
T ss_pred             HHHHHcCCC
Confidence            999999887

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.81  E-value=8.9e-20  Score=140.13  Aligned_cols=118  Identities=26%  Similarity=0.496  Sum_probs=99.5

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV   80 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l   80 (133)
                      +++||..|+++...     ..+|+||+|||+|+.||++++|||+..+++++|+.++|.+||+.++++.+.. .+.++..|
T Consensus       138 ~~~ll~~l~~~~~~-----~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~l  212 (322)
T 3eie_A          138 KTELLVQMNGVGND-----SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTL  212 (322)
T ss_dssp             HHHHHHHHGGGGTS-----CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHH
T ss_pred             HHHHHHHhcccccc-----CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            57899999998642     2389999999999999999999999999999999999999999999887654 67899999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHh------c---------------------------------------CCCCCCHHHHH
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTFC------G---------------------------------------KNSTPSQPKLL  115 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~~------~---------------------------------------~~~~i~~~dl~  115 (133)
                      ++.|+||||+||..++..+...+      .                                       ....++.+||.
T Consensus       213 a~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~  292 (322)
T 3eie_A          213 GAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFL  292 (322)
T ss_dssp             HHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHH
Confidence            99999999999987654432211      0                                       11459999999


Q ss_pred             HHHHhhhhc
Q psy15623        116 QAERPFRRS  124 (133)
Q Consensus       116 ~a~~~~~~s  124 (133)
                      +|++..+++
T Consensus       293 ~al~~~~ps  301 (322)
T 3eie_A          293 KAIKSTRPT  301 (322)
T ss_dssp             HHHHHSCCS
T ss_pred             HHHHhcCCC
Confidence            999988886

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.81  E-value=9.6e-19  Score=129.86  Aligned_cols=115  Identities=26%  Similarity=0.457  Sum_probs=101.6

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      ++++|..||++....      +++||++||+|+.+|++++|  ||++.+++++|+.++|.+||+.++++.++..+.++..
T Consensus       135 ~~~ll~~l~~~~~~~------~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~  208 (257)
T 1lv7_A          135 LNQMLVEMDGFEGNE------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAI  208 (257)
T ss_dssp             HHHHHHHHHTCCSSS------CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred             HHHHHHHhhCcccCC------CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHH
Confidence            467899999987655      89999999999999999999  9999999999999999999999999888888889999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~  122 (133)
                      ++..++||+++||..++..+...+  .+...++.+|+.++++...
T Consensus       209 la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~  253 (257)
T 1lv7_A          209 IARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM  253 (257)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence            999999999999997665554433  5567899999999987654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.80  E-value=4.3e-19  Score=143.57  Aligned_cols=114  Identities=26%  Similarity=0.379  Sum_probs=101.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||.+||++.+..      +|+||++||+|+.+|++++|  |||+.+++++|+.++|.+||+.++++.++..++++..
T Consensus       139 l~~LL~~ld~~~~~~------~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~  212 (476)
T 2ce7_A          139 LNQLLVEMDGFDSKE------GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEI  212 (476)
T ss_dssp             HHHHHHHHHHSCGGG------TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred             HHHHHHHHhccCCCC------CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHH
Confidence            578999999987655      89999999999999999999  9999999999999999999999999988888899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~  121 (133)
                      +++.|+||+|+||.+++..+...+  .+...++.+||..++...
T Consensus       213 la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v  256 (476)
T 2ce7_A          213 IAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV  256 (476)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence            999999999999997666554433  456789999999998755

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.79  E-value=1e-18  Score=129.56  Aligned_cols=111  Identities=29%  Similarity=0.414  Sum_probs=97.3

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++++.+|++.....      .++++++||.|+.||++++|  ||++.+++++|+.++|.+||+.+.++.++..++++..
T Consensus       139 ~~~ll~~l~g~~~~~------~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~  212 (254)
T 1ixz_A          139 LNQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL  212 (254)
T ss_dssp             HHHHHHHHHTCCTTC------CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred             HHHHHHHHhCCCCCC------CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHH
Confidence            468899999887654      79999999999999999999  9999999999999999999999998888888889999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHH
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAE  118 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~  118 (133)
                      +|+.|+||+|+||..++..+...+  .+...++.+|+.+++
T Consensus       213 la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~  253 (254)
T 1ixz_A          213 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA  253 (254)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence            999999999999987665554433  455679999998874

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.78  E-value=2.9e-19  Score=143.13  Aligned_cols=94  Identities=32%  Similarity=0.617  Sum_probs=82.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV   80 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l   80 (133)
                      +++||.+||++...     ..+|+||+|||+|+.||++++|||+..+++++|+.++|..||+.++++.+.. .+.++..|
T Consensus       255 ~~~lL~~l~~~~~~-----~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~l  329 (444)
T 2zan_A          255 KTEFLVQMQGVGVD-----NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQEL  329 (444)
T ss_dssp             HHHHHTTTTCSSCC-----CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHH
T ss_pred             HHHHHHHHhCcccC-----CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            57899999998642     2389999999999999999999999999999999999999999999877653 67899999


Q ss_pred             HHHcCCCCHHHHHHHHHHHH
Q psy15623         81 SDQLEGNAVQQKVMKSYTKK  100 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~  100 (133)
                      |+.|+||||+||..++..+.
T Consensus       330 a~~t~G~sgadl~~l~~~a~  349 (444)
T 2zan_A          330 GRKTDGYSGADISIIVRDAL  349 (444)
T ss_dssp             HHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHH
Confidence            99999999999986554443

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.77  E-value=8.2e-18  Score=126.48  Aligned_cols=111  Identities=29%  Similarity=0.414  Sum_probs=96.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++++.+|++.....      .++++++||.|+.||++++|  ||++.+++++|+.++|.+||+.++++.++..++++..
T Consensus       163 ~~~ll~~lsgg~~~~------~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~  236 (278)
T 1iy2_A          163 LNQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL  236 (278)
T ss_dssp             HHHHHHHHTTCCTTC------CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred             HHHHHHHHhCCCCCC------CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHH
Confidence            467888999887654      79999999999999999999  9999999999999999999999998888888889999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHH
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAE  118 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~  118 (133)
                      +|..++|++|+||..++..+...+  .+...++.+|+.+++
T Consensus       237 la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~  277 (278)
T 1iy2_A          237 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA  277 (278)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence            999999999999987655554433  455679999998875

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.76  E-value=2e-18  Score=140.37  Aligned_cols=115  Identities=28%  Similarity=0.392  Sum_probs=102.2

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||.+||+.....      .++++++||+|+.||++++|  |||+.|+|++|+.++|.+||+.++++.++..++++..
T Consensus       154 l~~LL~~Ldg~~~~~------~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~  227 (499)
T 2dhr_A          154 LNQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL  227 (499)
T ss_dssp             HHHHHHHGGGCCSSC------CCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHH
T ss_pred             HHHHHHHhcccccCc------cEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            578999999987655      89999999999999999999  9999999999999999999999998888888899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~  122 (133)
                      +|..|+||+|+||.+++..+...+  .+...++.+||.++++...
T Consensus       228 lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~  272 (499)
T 2dhr_A          228 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVM  272 (499)
T ss_dssp             HHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Confidence            999999999999998766665544  3456799999999988653

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.76  E-value=1.8e-17  Score=124.27  Aligned_cols=117  Identities=27%  Similarity=0.389  Sum_probs=101.9

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +.+++..++++....      ++++|+|||.++.+|++++|  ||+..++++.|+.++|.+||+.++++.....+.++..
T Consensus       141 l~~ll~~~~~~~~~~------~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~  214 (285)
T 3h4m_A          141 LMQLLAEMDGFDARG------DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEE  214 (285)
T ss_dssp             HHHHHHHHHTTCSSS------SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred             HHHHHHHhhCCCCCC------CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHH
Confidence            356778888887655      89999999999999999999  9999999999999999999999999888888889999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ++..+.|++|+||..++..+..  ...+...++.+|+.++++.+.+.
T Consensus       215 l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~  261 (285)
T 3h4m_A          215 IAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK  261 (285)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence            9999999999999876555544  34566789999999999877554

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.74  E-value=1.1e-17  Score=135.74  Aligned_cols=118  Identities=25%  Similarity=0.382  Sum_probs=103.1

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||..||+.....      +|+||+|||+|+.||+++.|  ||+..+++++|+.++|.+||+.++++.++..+.++..
T Consensus       325 ~~~LL~~ld~~~~~~------~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~  398 (489)
T 3hu3_A          325 VSQLLTLMDGLKQRA------HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQ  398 (489)
T ss_dssp             HHHHHHHHHHSCTTS------CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHH
T ss_pred             HHHHHHHhhccccCC------ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHH
Confidence            578999999887665      89999999999999999999  9999999999999999999999999988888889999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--cCC-----------------CCCCHHHHHHHHHhhhhcc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--GKN-----------------STPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~~~-----------------~~i~~~dl~~a~~~~~~s~  125 (133)
                      ++..|.||+|+||..++..+...+  ...                 ..++.+||..|++.++++.
T Consensus       399 la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~  463 (489)
T 3hu3_A          399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA  463 (489)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred             HHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchh
Confidence            999999999999998766555433  211                 1489999999999888864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.71  E-value=2.9e-17  Score=121.34  Aligned_cols=117  Identities=18%  Similarity=0.294  Sum_probs=95.0

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChh--cH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDL--DL   77 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~--~~   77 (133)
                      +++||.++++.....      ++++|+|||.++.+|++++|  ||+..+++++|+.++|.+||+.++++.+.....  .+
T Consensus       130 l~~ll~~~~~~~~~~------~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~  203 (262)
T 2qz4_A          130 LNQLLVEMDGMGTTD------HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYS  203 (262)
T ss_dssp             HHHHHHHHHTCCTTC------CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHH
T ss_pred             HHHHHHHhhCcCCCC------CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHH
Confidence            467888999887654      89999999999999999999  999999999999999999999999887766433  35


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhc
Q psy15623         78 ELVSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        78 ~~la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ..+++.+.||+|+||..++..+...+  .+...++.+|+..+++...++
T Consensus       204 ~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~  252 (262)
T 2qz4_A          204 QRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAG  252 (262)
T ss_dssp             HHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccC
Confidence            88999999999999987766655544  445689999999998866543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.71  E-value=1.2e-16  Score=124.38  Aligned_cols=119  Identities=26%  Similarity=0.391  Sum_probs=96.5

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV   80 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l   80 (133)
                      +++||..|++.....    ..+++||+|||.++.+|++++|||+..+++++|+.++|.+|++.++++.+.. .+.++..|
T Consensus       204 ~~~lL~~l~~~~~~~----~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~l  279 (357)
T 3d8b_A          204 KTEFLVQLDGATTSS----EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQI  279 (357)
T ss_dssp             HHHHHHHHHC----C----CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHH
T ss_pred             HHHHHHHHhcccccC----CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHH
Confidence            468999999876421    3489999999999999999999999999999999999999999999775543 56789999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHH--h------------cCCCCCCHHHHHHHHHhhhhc
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTF--C------------GKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~--~------------~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ++.|+||+|+||..++..+...  .            .....++.+||..|++.++++
T Consensus       280 a~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps  337 (357)
T 3d8b_A          280 VQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPS  337 (357)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGG
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCC
Confidence            9999999999998765544321  1            233579999999999998886

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.70  E-value=6e-17  Score=122.16  Aligned_cols=120  Identities=26%  Similarity=0.376  Sum_probs=95.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV   80 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l   80 (133)
                      .++||..+|+.....   ...+++||++||+|+.+|++++|||+..+++++|+.++|..||+.++++.+.. .+.++..+
T Consensus       141 ~~~ll~~l~~~~~~~---~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~l  217 (297)
T 3b9p_A          141 KTEFLVEFDGLPGNP---DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRL  217 (297)
T ss_dssp             HHHHHHHHHHCC---------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHH
T ss_pred             HHHHHHHHhcccccC---CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            467899999886531   12379999999999999999999999999999999999999999999876543 56778999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHH--hc------------CCCCCCHHHHHHHHHhhhhc
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTF--CG------------KNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~--~~------------~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ++.|.||+|+||..++..+...  ..            ....++.+||..|++..+++
T Consensus       218 a~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s  275 (297)
T 3b9p_A          218 AKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRS  275 (297)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCC
Confidence            9999999999998765543322  11            23579999999998877664

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.70  E-value=5.3e-18  Score=126.27  Aligned_cols=118  Identities=27%  Similarity=0.400  Sum_probs=100.1

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||..|++..+.     ..+|+||+|||.++.+|++++|  ||+..+++++|+.++|.+||+.++++.+...+.++..
T Consensus       135 ~~~ll~~l~~~~~~-----~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~  209 (268)
T 2r62_A          135 LNQLLAEMDGFGSE-----NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQE  209 (268)
T ss_dssp             TTTTTTTTTCSSCS-----CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTT
T ss_pred             HHHHHHHhhCcccC-----CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHH
Confidence            35677777776543     2369999999999999999999  9999999999999999999999999888777888999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHhhhhc
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFCG--KNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~~--~~~~i~~~dl~~a~~~~~~s  124 (133)
                      +++.+.||+|+||..++..+...+.  +...++.+|+.++++...++
T Consensus       210 la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~  256 (268)
T 2r62_A          210 VAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAG  256 (268)
T ss_dssp             TTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhc
Confidence            9999999999999988777766553  35689999999988766554

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=99.66  E-value=2.9e-16  Score=97.89  Aligned_cols=74  Identities=14%  Similarity=0.234  Sum_probs=64.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623         51 PLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        51 ~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      |+|+.++|.+||+.++++.++..++|+..||+.|+||||+||..+|..+..  +..+...++.+||..|++.+.++
T Consensus         1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~   76 (78)
T 3kw6_A            1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK   76 (78)
T ss_dssp             CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred             CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence            789999999999999999988889999999999999999999987665554  44667789999999999887664

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=119.89  Aligned_cols=119  Identities=24%  Similarity=0.380  Sum_probs=95.2

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELV   80 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l   80 (133)
                      .++||..|+++....    ..+|+||+|||+++.||++++|||+..+++++|+.++|.+||+.++...... .+.++..|
T Consensus       235 ~~~ll~~l~~~~~~~----~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~l  310 (389)
T 3vfd_A          235 KTEFLIEFDGVQSAG----DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQL  310 (389)
T ss_dssp             HHHHHHHHHHHC---------CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHH
T ss_pred             HHHHHHHhhcccccC----CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            467889999876532    3489999999999999999999999999999999999999999999775443 56688999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHH--hc------------CCCCCCHHHHHHHHHhhhhc
Q psy15623         81 SDQLEGNAVQQKVMKSYTKKTF--CG------------KNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        81 a~~t~G~sgadi~~~~~~~~~~--~~------------~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ++.+.||++++|..++..+...  ..            ....++.+||..+++..+++
T Consensus       311 a~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s  368 (389)
T 3vfd_A          311 ARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS  368 (389)
T ss_dssp             HHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence            9999999999998765544322  11            33578999999998876654

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=99.62  E-value=7.9e-16  Score=97.91  Aligned_cols=77  Identities=12%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             EcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHhhhhcc
Q psy15623         49 YVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERPFRRSR  125 (133)
Q Consensus        49 ~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~~~~s~  125 (133)
                      +-.+||.++|.+||+.++++.++..++|++.||+.|+|||||||.++|..+...  ......|+.+||..|++.+++.+
T Consensus         7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~~   85 (86)
T 2krk_A            7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD   85 (86)
T ss_dssp             CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCCC
T ss_pred             CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Confidence            346899999999999999999888899999999999999999999877666554  45567899999999999887653

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=99.55  E-value=1.7e-14  Score=90.80  Aligned_cols=73  Identities=8%  Similarity=0.049  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhccc
Q psy15623         54 SSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRSRV  126 (133)
Q Consensus        54 ~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s~~  126 (133)
                      |.++|.+||+.++++.++..++|++.||+.|+|||||||..+|..+...+  .....++.+||..|++.++++.-
T Consensus         2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~   76 (83)
T 3aji_B            2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE   76 (83)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred             CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence            67999999999999999888999999999999999999998887777755  44568999999999999988754

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=99.51  E-value=3.7e-14  Score=90.40  Aligned_cols=71  Identities=11%  Similarity=0.170  Sum_probs=60.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623         54 SSSGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        54 ~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      |.++|.+||+.++++.++..++|++.||+.|+|||||||.++|..+..  +......++.+||..|++.+.++
T Consensus         2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~   74 (88)
T 3vlf_B            2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG   74 (88)
T ss_dssp             CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence            568999999999999999899999999999999999999987666555  44566789999999999876543

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B

Probab=99.34  E-value=1.9e-13  Score=85.84  Aligned_cols=67  Identities=13%  Similarity=0.003  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhh
Q psy15623         56 SGRQELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        56 ~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~  122 (133)
                      ++|.+||+.++++.++..++|++.||+.|+|||||||.++|..+..  +..+...++.+||..|++.+.
T Consensus         1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~   69 (82)
T 2dzn_B            1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV   69 (82)
T ss_dssp             -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence            5799999999999988889999999999999999999987666655  445667899999999998774

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.32  E-value=1.3e-12  Score=99.14  Aligned_cols=86  Identities=19%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             HHHHHHHhhCCCCCC-----CCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCCh
Q psy15623          2 KSELLCHMDGIASTT-----NADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASD   74 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~-----~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~   74 (133)
                      .+.|++.||+.....     ......+|+||+|||+++.||++++|  |||..++  +|+.++|.+|++.++...    +
T Consensus       129 ~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~----~  202 (293)
T 3t15_A          129 NATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD----N  202 (293)
T ss_dssp             HHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG----C
T ss_pred             HHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC----C
Confidence            478899998654110     01134589999999999999999999  9999997  579999999999888653    4


Q ss_pred             hcHHHHHHHcCCCCHHHHH
Q psy15623         75 LDLELVSDQLEGNAVQQKV   93 (133)
Q Consensus        75 ~~~~~la~~t~G~sgadi~   93 (133)
                      ++.+.+++.++||+|+||.
T Consensus       203 ~~~~~l~~~~~~~~~~~l~  221 (293)
T 3t15_A          203 VPAEDVVKIVDNFPGQSID  221 (293)
T ss_dssp             CCHHHHHHHHHHSCSCCHH
T ss_pred             CCHHHHHHHhCCCCcccHH
Confidence            6788999999999999985

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.74  E-value=2e-07  Score=66.21  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=79.5

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.|+..++...        .++.+|++||.++.+++++.+|+ ..+++++|+.++..++++.++.+.+.. ++..+..++
T Consensus       144 ~~l~~~l~~~~--------~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~  214 (250)
T 1njg_A          144 NALLKTLEEPP--------EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA  214 (250)
T ss_dssp             HHHHHHHHSCC--------TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred             HHHHHHHhcCC--------CceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            45666666542        27899999999999999999996 689999999999999999998765433 455688999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~  118 (133)
                      +.+.| .++.+...+..+..  .....++.+++.+++
T Consensus       215 ~~~~G-~~~~~~~~~~~~~~--~~~~~i~~~~v~~~~  248 (250)
T 1njg_A          215 RAAEG-SLRDALSLTDQAIA--SGDGQVSTQAVSAML  248 (250)
T ss_dssp             HHHTT-CHHHHHHHHHHHHT--TTTSSBCHHHHHHHS
T ss_pred             HHcCC-CHHHHHHHHHHHHh--ccCceecHHHHHHHh
Confidence            99988 78888765544432  233479999988764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.74  E-value=1e-07  Score=73.19  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHHH--hcCCC
Q psy15623         31 NFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKTF--CGKNS  107 (133)
Q Consensus        31 n~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~~--~~~~~  107 (133)
                      |.++.+|+++++||.. +++++|+.+++.+|++..+...+.. ++..+..+++.+.|.+++++..++..+...  ..+..
T Consensus       238 ~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~  316 (368)
T 3uk6_A          238 QSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGT  316 (368)
T ss_dssp             EEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            3588999999999987 8999999999999999998764433 455688899999877899998765554443  35667


Q ss_pred             CCCHHHHHHHHHh
Q psy15623        108 TPSQPKLLQAERP  120 (133)
Q Consensus       108 ~i~~~dl~~a~~~  120 (133)
                      .++.+++.+++..
T Consensus       317 ~It~~~v~~a~~~  329 (368)
T 3uk6_A          317 EVQVDDIKRVYSL  329 (368)
T ss_dssp             SBCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            8999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.71  E-value=1.3e-07  Score=71.96  Aligned_cols=98  Identities=6%  Similarity=0.048  Sum_probs=75.7

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH-
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK-  100 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~-  100 (133)
                      ++++|++||.+..+++++++||+..+++++|+.+++..+++.++...+.. ++..+..+++.+.| +++++...+..+. 
T Consensus       154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~  232 (338)
T 3pfi_A          154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRD  232 (338)
T ss_dssp             CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999876544 45557888887766 4566655443332 


Q ss_pred             -HHhcCCCCCCHHHHHHHHHhh
Q psy15623        101 -TFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus       101 -~~~~~~~~i~~~dl~~a~~~~  121 (133)
                       +...+...++.+++..++...
T Consensus       233 ~a~~~~~~~i~~~~~~~~~~~~  254 (338)
T 3pfi_A          233 FADVNDEEIITEKRANEALNSL  254 (338)
T ss_dssp             HHHHTTCSEECHHHHHHHHHHH
T ss_pred             HHHhhcCCccCHHHHHHHHHHh
Confidence             223445668888888776543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.68  E-value=3.6e-07  Score=64.28  Aligned_cols=103  Identities=12%  Similarity=0.044  Sum_probs=75.6

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHH
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSD   82 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~   82 (133)
                      .|+..++....        ++.+|++||.++.+++++.+||. .+++++|+.++..++++..+.+.+.. ++..+..+++
T Consensus       121 ~l~~~l~~~~~--------~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  191 (226)
T 2chg_A          121 ALRRTMEMYSK--------SCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIY  191 (226)
T ss_dssp             HHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred             HHHHHHHhcCC--------CCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            45555655322        67889999999999999999998 89999999999999999988654333 3556788888


Q ss_pred             HcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q psy15623         83 QLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAER  119 (133)
Q Consensus        83 ~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~~  119 (133)
                      .+.| ....+......+...+   ..++.+++.+++.
T Consensus       192 ~~~g-~~r~l~~~l~~~~~~~---~~I~~~~v~~~~~  224 (226)
T 2chg_A          192 ISGG-DFRKAINALQGAAAIG---EVVDADTIYQITA  224 (226)
T ss_dssp             HHTT-CHHHHHHHHHHHHHTC---SCBCHHHHHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHhcC---ceecHHHHHHHhc
Confidence            8876 4555544333332222   6799999988764

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=98.61  E-value=4.6e-09  Score=84.26  Aligned_cols=55  Identities=11%  Similarity=0.024  Sum_probs=0.0

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEe-eCCCCCCCHHHHh--ccccEEEcCCCCHH-HHHHHHH
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGA-SNFPWNIDDAFLR--RLEKRIYVPLPSSS-GRQELLR   63 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~a-Tn~~~~lD~al~r--Rfd~~i~i~~P~~~-~R~~il~   63 (133)
                      ++++||++|||+.+..      .|  +++ ||+|+.||+|++|  |||++|+|++|+.. .|.+|+.
T Consensus       131 vl~~LL~~~dg~~~~~------~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~  189 (444)
T 1g41_A          131 ILDALLPPAKNQWGEV------EN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA  189 (444)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             HHHHHHHHhhcccccc------cc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence            5789999999997754      43  455 9999999999999  99999999999988 7888864

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.58  E-value=3.9e-07  Score=68.70  Aligned_cols=98  Identities=11%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~  101 (133)
                      ++.+|++||.++.+++++.+||+..+++++|+.+++..+++.++...+.. ++..+..|+..+.|. ++++...+..+..
T Consensus       138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~  216 (324)
T 1hqc_A          138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRD  216 (324)
T ss_dssp             CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999998765443 455678899998774 5677655444433


Q ss_pred             Hh--cCCCCCCHHHHHHHHHhh
Q psy15623        102 FC--GKNSTPSQPKLLQAERPF  121 (133)
Q Consensus       102 ~~--~~~~~i~~~dl~~a~~~~  121 (133)
                      .+  .+...++.+++..++..+
T Consensus       217 ~a~~~~~~~i~~~~~~~~~~~~  238 (324)
T 1hqc_A          217 FAQVAGEEVITRERALEALAAL  238 (324)
T ss_dssp             TSTTTSCSCCCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHh
Confidence            33  244568888887776543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=98.54  E-value=1.8e-06  Score=65.58  Aligned_cols=102  Identities=11%  Similarity=0.089  Sum_probs=71.7

Q ss_pred             cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-----------------------Ch
Q psy15623         23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-----------------------SD   74 (133)
Q Consensus        23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-----------------------~~   74 (133)
                      ++++|+|+|..+     .+++++++||+.+++++.|+.++|.+|++......+..                       ++
T Consensus       150 ~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~  229 (331)
T 2r44_A          150 PFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISE  229 (331)
T ss_dssp             SCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCH
T ss_pred             CEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCH
Confidence            678888888443     39999999999999999999999999999987543211                       12


Q ss_pred             hcHHHHHHHc-------------------CCCCHHHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHhhhhc
Q psy15623         75 LDLELVSDQL-------------------EGNAVQQKVMKSYTKKT--FCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        75 ~~~~~la~~t-------------------~G~sgadi~~~~~~~~~--~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      .-++.+++..                   .|.|++.+..+...+.+  ...++..++.+|+.+++..+-+.
T Consensus       230 ~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~  300 (331)
T 2r44_A          230 SLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH  300 (331)
T ss_dssp             HHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence            2244444322                   26688888765444433  33566779999999998755433

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=98.54  E-value=1.6e-10  Score=92.48  Aligned_cols=80  Identities=16%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             HHHHHHhh--CCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--cccc--EEEcCCCC--HHHHHHHHHHHHhcCCCCCh
Q psy15623          3 SELLCHMD--GIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEK--RIYVPLPS--SSGRQELLRLILRQVDLASD   74 (133)
Q Consensus         3 ~~lL~~lD--~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~--~i~i~~P~--~~~R~~il~~~~~~~~~~~~   74 (133)
                      ++++.+|+  ++...      +.|+|++|||+++.+|+|+.|  |||+  .+++|+|+  .++|.+|++.+..       
T Consensus       174 ~~ll~~l~~~~~~~~------~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------  240 (456)
T 2c9o_A          174 PSIFESLQKERVEAG------DVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------  240 (456)
T ss_dssp             HHHHHHHHHTTCCTT------EEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------
T ss_pred             HHHHHHHhhccCCCC------CEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------
Confidence            45666665  33333      267777999999999999998  9999  77788884  4788888876553       


Q ss_pred             hcHHHHHHHcCCCCHHHHHHHHH
Q psy15623         75 LDLELVSDQLEGNAVQQKVMKSY   97 (133)
Q Consensus        75 ~~~~~la~~t~G~sgadi~~~~~   97 (133)
                      .|++.++..|+|  |+||.+++.
T Consensus       241 ~dl~~~a~~t~g--gadl~~l~~  261 (456)
T 2c9o_A          241 HDLDVANARPQG--GQDILSMMG  261 (456)
T ss_dssp             HHHHHTC----------------
T ss_pred             HHHHHHHHhCCC--hhHHHHHHh
Confidence            379999999999  999987663

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.53  E-value=1.6e-07  Score=76.80  Aligned_cols=97  Identities=13%  Similarity=0.072  Sum_probs=66.7

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh-----cCCCC------ChhcHHHHHHHcCC-CCH
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR-----QVDLA------SDLDLELVSDQLEG-NAV   89 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~-----~~~~~------~~~~~~~la~~t~G-~sg   89 (133)
                      .++++|+|||.++.+||++++||+ .|+++.|+.++|.+|++.++.     ...+.      ++..+..+++...+ ...
T Consensus       223 ~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v  301 (543)
T 3m6a_A          223 SKVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV  301 (543)
T ss_dssp             SSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred             cceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence            478999999999999999999996 799999999999999998872     22221      23345666665544 344


Q ss_pred             HHHH----HHHHHHHHH--hc--CCCCCCHHHHHHHHH
Q psy15623         90 QQKV----MKSYTKKTF--CG--KNSTPSQPKLLQAER  119 (133)
Q Consensus        90 adi~----~~~~~~~~~--~~--~~~~i~~~dl~~a~~  119 (133)
                      ++|.    ..+..+...  ..  ....++.+++.+++.
T Consensus       302 R~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg  339 (543)
T 3m6a_A          302 RSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIG  339 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhC
Confidence            5553    333332222  22  334688888888765

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.53  E-value=4.3e-07  Score=65.05  Aligned_cols=94  Identities=10%  Similarity=0.011  Sum_probs=67.6

Q ss_pred             EEEEeeCCCC---CCCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHH
Q psy15623         25 VILGASNFPW---NIDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYT   98 (133)
Q Consensus        25 ~vi~aTn~~~---~lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~   98 (133)
                      +|+++++.+.   .+++++.+||.  ..+++++|+.+++.++++.++...+.. ++..++.+++.+.| +.+++...+..
T Consensus       141 ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~  219 (242)
T 3bos_A          141 LIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDR  219 (242)
T ss_dssp             EEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred             EEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence            5555544454   56799999987  999999999999999999999755433 34557889998876 77787654333


Q ss_pred             HHHHh-cCCCCCCHHHHHHHHH
Q psy15623         99 KKTFC-GKNSTPSQPKLLQAER  119 (133)
Q Consensus        99 ~~~~~-~~~~~i~~~dl~~a~~  119 (133)
                      +...+ .+...++.+++.++++
T Consensus       220 ~~~~a~~~~~~It~~~v~~~l~  241 (242)
T 3bos_A          220 LDKASMVHQRKLTIPFVKEMLR  241 (242)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHT
T ss_pred             HHHHHHHhCCCCcHHHHHHHhh
Confidence            33332 2345699999988763

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=98.48  E-value=1.7e-06  Score=65.79  Aligned_cols=103  Identities=14%  Similarity=0.160  Sum_probs=73.0

Q ss_pred             cEEEEEeeCCCC-CCCHHHHhccccEEEcCCC-CHHHHHHHHHHHHh-------------------------------cC
Q psy15623         23 SIVILGASNFPW-NIDDAFLRRLEKRIYVPLP-SSSGRQELLRLILR-------------------------------QV   69 (133)
Q Consensus        23 ~v~vi~aTn~~~-~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~~-------------------------------~~   69 (133)
                      ++++|+|||... .+++++++||+.+++++.| +.+.|.+|++..+.                               +.
T Consensus       187 ~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  266 (350)
T 1g8p_A          187 RFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKV  266 (350)
T ss_dssp             CEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             ceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCC
Confidence            789999999744 8999999999999999998 78888888876321                               12


Q ss_pred             CCCChhcHHHHHHHcCC---CCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhhccc
Q psy15623         70 DLASDLDLELVSDQLEG---NAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRRSRV  126 (133)
Q Consensus        70 ~~~~~~~~~~la~~t~G---~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~s~~  126 (133)
                      .++ +.-+..|++.+.|   -+.+.+..++..+...+  .++..++.+|+.+++...-+.++
T Consensus       267 ~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~  327 (350)
T 1g8p_A          267 EAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL  327 (350)
T ss_dssp             BCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred             CCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence            223 3335556555533   26788876655444433  56667999999999886655554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.47  E-value=2.3e-07  Score=69.64  Aligned_cols=107  Identities=13%  Similarity=0.075  Sum_probs=71.7

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-Chh
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDL   75 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~   75 (133)
                      .+.|+..|+....        ++++|++||.++     .++|++.+||+.+++|+.|+.+++.+|++.++.+.+.. ++.
T Consensus       156 ~~~Ll~~l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~  227 (309)
T 3syl_A          156 IEILLQVMENNRD--------DLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE  227 (309)
T ss_dssp             HHHHHHHHHHCTT--------TCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHH
T ss_pred             HHHHHHHHhcCCC--------CEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence            3577778876432        679999998754     35799999999999999999999999999999876544 344


Q ss_pred             cHHHHHHHc------CC-CCHHHHHHHHHHHH------HHhcCCCCCCHHHHHH
Q psy15623         76 DLELVSDQL------EG-NAVQQKVMKSYTKK------TFCGKNSTPSQPKLLQ  116 (133)
Q Consensus        76 ~~~~la~~t------~G-~sgadi~~~~~~~~------~~~~~~~~i~~~dl~~  116 (133)
                      .+..+++..      .. -+++++...+..+.      ........++.+++..
T Consensus       228 ~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~  281 (309)
T 3syl_A          228 AETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALST  281 (309)
T ss_dssp             HHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHE
T ss_pred             HHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhh
Confidence            456666652      22 24778765333222      1222345566666653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.42  E-value=4.3e-06  Score=64.15  Aligned_cols=99  Identities=10%  Similarity=0.025  Sum_probs=75.0

Q ss_pred             cEEEEEeeCCC---CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCCChhcHHHHHHHcCCCC--HHHHH
Q psy15623         23 SIVILGASNFP---WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLASDLDLELVSDQLEGNA--VQQKV   93 (133)
Q Consensus        23 ~v~vi~aTn~~---~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~~~~~~~~la~~t~G~s--gadi~   93 (133)
                      ++.+|++||.+   +.+++++.+||...+++++|+.++..+|++..+..    ..+ ++..++.+++.+.+.+  ...+.
T Consensus       164 ~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~G~~r~a~  242 (384)
T 2qby_B          164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAKEHGDARKAV  242 (384)
T ss_dssp             CEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHTTCCCHHHHH
T ss_pred             ceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHhccCCHHHHH
Confidence            78999999987   78999999999889999999999999999998863    223 3445778888886333  23333


Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHhhh
Q psy15623         94 MKSYTKKTFCGKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        94 ~~~~~~~~~~~~~~~i~~~dl~~a~~~~~  122 (133)
                      ..+..+...+.+...++.+++..++....
T Consensus       243 ~~l~~a~~~a~~~~~i~~~~v~~~~~~~~  271 (384)
T 2qby_B          243 NLLFRAAQLASGGGIIRKEHVDKAIVDYE  271 (384)
T ss_dssp             HHHHHHHHHTTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence            44444544555667899999999877654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.40  E-value=9.1e-08  Score=71.02  Aligned_cols=95  Identities=16%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             CcEEEEEeeCCCCCCCH-HHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHHHcCCC----CHHHHHHHH
Q psy15623         22 KSIVILGASNFPWNIDD-AFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSDQLEGN----AVQQKVMKS   96 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~-al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~G~----sgadi~~~~   96 (133)
                      .++++|+|||.++.+|+ .+.+||+..+++|.++.  |.+|.+.+.....+ ++.++..+++.+.|+    +.+++.+..
T Consensus       166 ~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l  242 (272)
T 1d2n_A          166 RKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLI  242 (272)
T ss_dssp             CEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred             CCEEEEEecCChhhcchhhhhcccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence            47899999999999999 56669999988865543  45555554444333 466799999999998    555654443


Q ss_pred             HHHHHHhcCCCCCCHHHHHHHHHhhh
Q psy15623         97 YTKKTFCGKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        97 ~~~~~~~~~~~~i~~~dl~~a~~~~~  122 (133)
                      ..+   .........+++.+++.+..
T Consensus       243 ~~a---~~~~~~~~~~~~~~~l~~~~  265 (272)
T 1d2n_A          243 EMS---LQMDPEYRVRKFLALLREEG  265 (272)
T ss_dssp             HHH---TTSCGGGHHHHHHHHHHHTS
T ss_pred             HHH---hhhchHHHHHHHHHHHHHcC
Confidence            332   22333456667776665544

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.38  E-value=1.3e-06  Score=69.64  Aligned_cols=111  Identities=12%  Similarity=0.214  Sum_probs=77.7

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCC---CCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhc--CCCCChhc
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWN---IDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQ--VDLASDLD   76 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~---lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~   76 (133)
                      +|+..++.+...+      ..+||++.+.|..   +++++++||.  ..+++++|+.++|..|++..+..  ..++.+ .
T Consensus       215 ~l~~~l~~l~~~~------~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~  287 (440)
T 2z4s_A          215 ELFHTFNELHDSG------KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-V  287 (440)
T ss_dssp             HHHHHHHHHHTTT------CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-H
T ss_pred             HHHHHHHHHHHCC------CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-H
Confidence            4555555544332      5566665555655   8999999997  88999999999999999999864  334433 4


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHhhh
Q psy15623         77 LELVSDQLEGNAVQQKVMKSYTKKTFC-GKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        77 ~~~la~~t~G~sgadi~~~~~~~~~~~-~~~~~i~~~dl~~a~~~~~  122 (133)
                      +..|+..+.| +++++...+..+...+ .....++.+++.++++...
T Consensus       288 l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~  333 (440)
T 2z4s_A          288 LNFVAENVDD-NLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI  333 (440)
T ss_dssp             HHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence            7889999876 7888875443333332 2334699999999877554

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.38  E-value=6.6e-06  Score=62.81  Aligned_cols=99  Identities=11%  Similarity=0.130  Sum_probs=72.6

Q ss_pred             cEEEEEeeCCC---CCCCHHHHhcccc-EEEcCCCCHHHHHHHHHHHHhc----CCCCChhcHHHHHHHcC---CCCHHH
Q psy15623         23 SIVILGASNFP---WNIDDAFLRRLEK-RIYVPLPSSSGRQELLRLILRQ----VDLASDLDLELVSDQLE---GNAVQQ   91 (133)
Q Consensus        23 ~v~vi~aTn~~---~~lD~al~rRfd~-~i~i~~P~~~~R~~il~~~~~~----~~~~~~~~~~~la~~t~---G~sgad   91 (133)
                      ++.+|++||.+   +.+++++.+||.. .+++++|+.+++.+|++..+..    ..+ ++..++.+++.+.   |. +..
T Consensus       167 ~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~G~-~r~  244 (387)
T 2v1u_A          167 WVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALAAREHGD-ARR  244 (387)
T ss_dssp             -CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHHHSSSCC-HHH
T ss_pred             eEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhccC-HHH
Confidence            78999999998   7899999999986 9999999999999999998864    222 3344777888886   63 444


Q ss_pred             HHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhhh
Q psy15623         92 KVMKSYTKKTFC--GKNSTPSQPKLLQAERPFRR  123 (133)
Q Consensus        92 i~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~~  123 (133)
                      +...+..+...+  .+...++.+++..++.....
T Consensus       245 ~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~  278 (387)
T 2v1u_A          245 ALDLLRVAGEIAERRREERVRREHVYSARAEIER  278 (387)
T ss_dssp             HHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence            444333333332  35678999999998775543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.35  E-value=2.6e-06  Score=63.50  Aligned_cols=121  Identities=12%  Similarity=0.100  Sum_probs=77.8

Q ss_pred             HHHHHHHhhCCCCCC--CCCCCCcEEEEEe----eCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHH----HH-----
Q psy15623          2 KSELLCHMDGIASTT--NADPTKSIVILGA----SNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRL----IL-----   66 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~--~~~~~~~v~vi~a----Tn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~----~~-----   66 (133)
                      .+.|+..|++..-..  +..+..++++|++    ++.+..+++++.+||+..++|++|+.+++.+|++.    ++     
T Consensus       145 ~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~  224 (310)
T 1ofh_A          145 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA  224 (310)
T ss_dssp             HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH
T ss_pred             HHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHH
Confidence            356777788642100  0001236788888    56789999999999999999999999999999983    22     


Q ss_pred             --hcCCC---CChhcHHHHHHHc-------CCCCHHHHHHHHHHHH-----HHhcCCC---CCCHHHHHHHHHhhh
Q psy15623         67 --RQVDL---ASDLDLELVSDQL-------EGNAVQQKVMKSYTKK-----TFCGKNS---TPSQPKLLQAERPFR  122 (133)
Q Consensus        67 --~~~~~---~~~~~~~~la~~t-------~G~sgadi~~~~~~~~-----~~~~~~~---~i~~~dl~~a~~~~~  122 (133)
                        .....   -++..++.|++.+       ++..++++...+..+.     .......   .++.+++.+++....
T Consensus       225 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~  300 (310)
T 1ofh_A          225 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV  300 (310)
T ss_dssp             HHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred             HHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence              11221   1344577788777       2567888865433221     1221111   489999998876543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.26  E-value=1.4e-05  Score=61.12  Aligned_cols=99  Identities=10%  Similarity=0.145  Sum_probs=75.8

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~  101 (133)
                      .+.++++||.++.|++.+++||...+.+++|+.+++.+|++...+..... ++..+..||+++.|. ++++..++..+..
T Consensus       150 ~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~  228 (334)
T 1in4_A          150 PFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRD  228 (334)
T ss_dssp             CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHH
T ss_pred             CeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHH
Confidence            57788899999999999999999999999999999999999988665443 345578899999884 5666544333322


Q ss_pred             --HhcCCCCCCHHHHHHHHHhhh
Q psy15623        102 --FCGKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus       102 --~~~~~~~i~~~dl~~a~~~~~  122 (133)
                        ...+...++.+++.+++....
T Consensus       229 ~a~~~~~~~It~~~v~~al~~~~  251 (334)
T 1in4_A          229 MLTVVKADRINTDIVLKTMEVLN  251 (334)
T ss_dssp             HHHHHTCSSBCHHHHHHHHHHHT
T ss_pred             HHHHcCCCCcCHHHHHHHHHHhC
Confidence              224456799998888877543

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.22  E-value=3.6e-06  Score=67.55  Aligned_cols=65  Identities=20%  Similarity=0.250  Sum_probs=52.8

Q ss_pred             cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCC-ChhcHHHHHHHcCCCC
Q psy15623         23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQLEGNA   88 (133)
Q Consensus        23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~-~~~~~~~la~~t~G~s   88 (133)
                      .+.+|++||.+.     .+|+++.|||. .|.|+.|+.+++..||+.++..    .... .+..+..++..+.+|.
T Consensus       291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~  365 (468)
T 3pxg_A          291 ELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI  365 (468)
T ss_dssp             SCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred             CEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence            789999999987     79999999998 5999999999999999988865    2222 4455777777776554

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=98.21  E-value=5.4e-06  Score=68.54  Aligned_cols=102  Identities=16%  Similarity=0.073  Sum_probs=72.0

Q ss_pred             CcEEEEEeeCCCC-------------CCCHHHHhccc-cEEEcCCCCHHHHHHHHHHHHhcCCC----------------
Q psy15623         22 KSIVILGASNFPW-------------NIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQVDL----------------   71 (133)
Q Consensus        22 ~~v~vi~aTn~~~-------------~lD~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~~~~----------------   71 (133)
                      .++.||||||.++             .+++++++||| ..+..+.|+.+ ...|.+..+.....                
T Consensus       433 ~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i  511 (595)
T 3f9v_A          433 ARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYI  511 (595)
T ss_dssp             CCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred             CceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence            3788999999987             99999999998 45666788888 88888887754220                


Q ss_pred             ----------CChhcHHHHHHH--------------cCCCCHHHHHHHHHHH--HHHhcCCCCCCHHHHHHHHHhhhhc
Q psy15623         72 ----------ASDLDLELVSDQ--------------LEGNAVQQKVMKSYTK--KTFCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        72 ----------~~~~~~~~la~~--------------t~G~sgadi~~~~~~~--~~~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                                -++...+.|++.              +.+.|++.+..+...+  .+....+..++.+|+.+|++-++.|
T Consensus       512 ~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s  590 (595)
T 3f9v_A          512 AYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF  590 (595)
T ss_dssp             HHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence                      011122334433              3478888887654443  3444677889999999998876654

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.20  E-value=1.5e-05  Score=59.45  Aligned_cols=91  Identities=12%  Similarity=0.049  Sum_probs=65.4

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK  100 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~  100 (133)
                      .++.+|++||.++.+++++.+|+. .+++++|+.+++..++...+++.+.. ++..+..+++.++| +.+.+........
T Consensus       131 ~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~  208 (319)
T 2chq_A          131 KSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA  208 (319)
T ss_dssp             SSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            378899999999999999999997 89999999999999999998765543 45567888877766 3333333222211


Q ss_pred             HHhcCCCCCCHHHHHHH
Q psy15623        101 TFCGKNSTPSQPKLLQA  117 (133)
Q Consensus       101 ~~~~~~~~i~~~dl~~a  117 (133)
                      .   ....++.+++.+.
T Consensus       209 ~---~~~~i~~~~v~~~  222 (319)
T 2chq_A          209 A---IGEVVDADTIYQI  222 (319)
T ss_dssp             H---SSSCBCHHHHHHH
T ss_pred             H---cCCCCCHHHHHHH
Confidence            1   1345776666554

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.18  E-value=1.8e-05  Score=59.97  Aligned_cols=107  Identities=15%  Similarity=0.109  Sum_probs=74.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.|+..|+....        .+.+|.+||.++.+++++.+|+. .+++++|+.++...+++..+...+.. ++..++.|+
T Consensus       151 ~~Ll~~le~~~~--------~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~  221 (353)
T 1sxj_D          151 SALRRTMETYSG--------VTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL  221 (353)
T ss_dssp             HHHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHhcCC--------CceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            456666665533        45677789999999999999997 89999999999999999988654432 355688899


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGK---NSTPSQPKLLQAER  119 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~---~~~i~~~dl~~a~~  119 (133)
                      +.+.|- .+.+.+....+......   ...++.+++.+.+.
T Consensus       222 ~~~~G~-~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~  261 (353)
T 1sxj_D          222 DISAGD-LRRGITLLQSASKGAQYLGDGKNITSTQVEELAG  261 (353)
T ss_dssp             HHTSSC-HHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred             HHcCCC-HHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence            999874 44443322222222211   12688888877654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.16  E-value=4.7e-05  Score=58.07  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=74.3

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.|+..++...        .++++|++||.++.+++++.+|+ ..+++++|+.++..++++..+++.+.. ++..+..++
T Consensus       137 ~~Ll~~le~~~--------~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~  207 (373)
T 1jr3_A          137 NALLKTLEEPP--------EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA  207 (373)
T ss_dssp             HHHHHHHHSCC--------SSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred             HHHHHHHhcCC--------CceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            45666666543        27889999999999999999998 789999999999999999988654433 344578899


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQA  117 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a  117 (133)
                      +.+.| +..++...+..+....  ...++.+++.+.
T Consensus       208 ~~~~G-~~r~~~~~l~~~~~~~--~~~i~~~~v~~~  240 (373)
T 1jr3_A          208 RAAEG-SLRDALSLTDQAIASG--DGQVSTQAVSAM  240 (373)
T ss_dssp             HHSSS-CHHHHHHHHHHHHHHT--TTCBCHHHHHHH
T ss_pred             HHCCC-CHHHHHHHHHHHHHhc--CCcccHHHHHHH
Confidence            99987 6666654433322222  345777776655

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.07  E-value=7.4e-06  Score=62.05  Aligned_cols=94  Identities=14%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             cEEEEEeeCCCC---CCCHHHHhccc--cEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHH
Q psy15623         23 SIVILGASNFPW---NIDDAFLRRLE--KRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKS   96 (133)
Q Consensus        23 ~v~vi~aTn~~~---~lD~al~rRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~   96 (133)
                      ..+|++++|.|.   .+++++.+||+  ..+++++ +.++|..|++.++...+.. ++..++.|++.+ | ..+++....
T Consensus       132 ~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l  208 (324)
T 1l8q_A          132 KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKI  208 (324)
T ss_dssp             CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHH
T ss_pred             CeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHH
Confidence            567777777776   69999999997  6789999 9999999999999754443 345588899998 4 667775433


Q ss_pred             HHHHHH------hcCCCCC-CHHHHHHHHH
Q psy15623         97 YTKKTF------CGKNSTP-SQPKLLQAER  119 (133)
Q Consensus        97 ~~~~~~------~~~~~~i-~~~dl~~a~~  119 (133)
                      ..+...      ..+...+ +.+++.+++.
T Consensus       209 ~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~  238 (324)
T 1l8q_A          209 KLIKLKGFEGLERKERKERDKLMQIVEFVA  238 (324)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCHHHhccccccCCCCHHHHHHHHH
Confidence            222222      0122345 6677776655

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.04  E-value=1.9e-05  Score=66.61  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=53.5

Q ss_pred             cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC----CCC-ChhcHHHHHHHc-----CCC
Q psy15623         23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV----DLA-SDLDLELVSDQL-----EGN   87 (133)
Q Consensus        23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~----~~~-~~~~~~~la~~t-----~G~   87 (133)
                      .+.+|+|||...     .+|+++.||| ..|+|+.|+.+++.+||+.+....    ... .+..+..+++.+     +++
T Consensus       291 ~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~  369 (758)
T 3pxi_A          291 ELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRF  369 (758)
T ss_dssp             SCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSC
T ss_pred             CEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCc
Confidence            789999999988     7999999999 569999999999999999887653    222 344456666654     355


Q ss_pred             CHHHHH
Q psy15623         88 AVQQKV   93 (133)
Q Consensus        88 sgadi~   93 (133)
                      .+....
T Consensus       370 ~p~~ai  375 (758)
T 3pxi_A          370 LPDKAI  375 (758)
T ss_dssp             TTHHHH
T ss_pred             CCcHHH
Confidence            555554

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.03  E-value=2.6e-05  Score=62.35  Aligned_cols=95  Identities=14%  Similarity=0.219  Sum_probs=69.6

Q ss_pred             cEEEEEee--CCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC-------CCC-ChhcHHHHHHHcCCCCHHHH
Q psy15623         23 SIVILGAS--NFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------DLA-SDLDLELVSDQLEGNAVQQK   92 (133)
Q Consensus        23 ~v~vi~aT--n~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~-------~~~-~~~~~~~la~~t~G~sgadi   92 (133)
                      .+++|++|  |....+++++++||. ++.++.|+.+++..+++..+...       ... ++..++.|++.+.| ..+++
T Consensus       134 ~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~l  211 (447)
T 3pvs_A          134 TITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRA  211 (447)
T ss_dssp             SCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHH
T ss_pred             ceEEEecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHH
Confidence            56777777  555689999999997 78899999999999999999762       111 34457888888776 55666


Q ss_pred             HHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q psy15623         93 VMKSYTKKTFCG----KNSTPSQPKLLQAER  119 (133)
Q Consensus        93 ~~~~~~~~~~~~----~~~~i~~~dl~~a~~  119 (133)
                      .+.+..+...+.    +...|+.+++.+++.
T Consensus       212 ln~Le~a~~~a~~~~~~~~~It~e~v~~~l~  242 (447)
T 3pvs_A          212 LNTLEMMADMAEVDDSGKRVLKPELLTEIAG  242 (447)
T ss_dssp             HHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred             HHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence            655554444443    335799999988765

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.02  E-value=4.3e-05  Score=57.08  Aligned_cols=81  Identities=16%  Similarity=0.182  Sum_probs=61.9

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.|+..|+....        ++.+|++||.++.+++++.+|+. .+++++|+.++...+++..+...+.. ++..+..++
T Consensus       128 ~~L~~~le~~~~--------~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  198 (327)
T 1iqp_A          128 QALRRTMEMFSS--------NVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAIL  198 (327)
T ss_dssp             HHHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHH
T ss_pred             HHHHHHHHhcCC--------CCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            345666665432        67888899999999999999998 89999999999999999988765543 455678888


Q ss_pred             HHcCCCCHHHHH
Q psy15623         82 DQLEGNAVQQKV   93 (133)
Q Consensus        82 ~~t~G~sgadi~   93 (133)
                      +.+.| +.+.+.
T Consensus       199 ~~~~g-~~r~~~  209 (327)
T 1iqp_A          199 YIAEG-DMRRAI  209 (327)
T ss_dssp             HHHTT-CHHHHH
T ss_pred             HHCCC-CHHHHH
Confidence            88876 444443

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.00  E-value=1.3e-05  Score=60.63  Aligned_cols=79  Identities=15%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHh-------c--CCCCC
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILR-------Q--VDLAS   73 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~-------~--~~~~~   73 (133)
                      +.|+..++....        ++.+|++||.++.+++++.+||. .++|++|+.++|.+|++.++.       .  ..++.
T Consensus       124 ~~L~~~le~~~~--------~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~  194 (324)
T 3u61_B          124 RHLRSFMEAYSS--------NCSIIITANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD  194 (324)
T ss_dssp             HHHHHHHHHHGG--------GCEEEEEESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC
T ss_pred             HHHHHHHHhCCC--------CcEEEEEeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            345666665433        56888999999999999999995 799999999998877665542       2  23332


Q ss_pred             hhcHHHHHHHcCCCCHH
Q psy15623         74 DLDLELVSDQLEGNAVQ   90 (133)
Q Consensus        74 ~~~~~~la~~t~G~sga   90 (133)
                      ...++.+++.+.|-...
T Consensus       195 ~~~~~~l~~~~~gd~R~  211 (324)
T 3u61_B          195 MKVVAALVKKNFPDFRK  211 (324)
T ss_dssp             HHHHHHHHHHTCSCTTH
T ss_pred             HHHHHHHHHhCCCCHHH
Confidence            15578888887764333

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.00  E-value=0.00016  Score=54.97  Aligned_cols=111  Identities=14%  Similarity=0.108  Sum_probs=75.5

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCC---CCCCHHHHhccc-cEEEcCCCCHHHHHHHHHHHHhc----CCCCCh
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFP---WNIDDAFLRRLE-KRIYVPLPSSSGRQELLRLILRQ----VDLASD   74 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~---~~lD~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~----~~~~~~   74 (133)
                      ..|+..++... .      .++.+|++||.+   ..+++.+.+||. +.+++++|+.++..++++..+..    ..+ .+
T Consensus       150 ~~l~~~~~~~~-~------~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~  221 (386)
T 2qby_A          150 YKLSRINSEVN-K------SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL-PD  221 (386)
T ss_dssp             HHHHHHHHSCC-C--------EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS-CH
T ss_pred             HHHhhchhhcC-C------CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC-CH
Confidence            34555565542 2      278999999987   578899999987 49999999999999999988753    222 34


Q ss_pred             hcHHHHHHHcC---CCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhh
Q psy15623         75 LDLELVSDQLE---GNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        75 ~~~~~la~~t~---G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~~~~  122 (133)
                      ..+..+++.+.   |. +..+..++..+...+  .+...++.+++..++....
T Consensus       222 ~~~~~l~~~~~~~~G~-~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~  273 (386)
T 2qby_A          222 NVIKLCAALAAREHGD-ARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE  273 (386)
T ss_dssp             HHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence            44677777776   53 444444433333333  3556899999998876554

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.97  E-value=6.5e-05  Score=56.03  Aligned_cols=92  Identities=15%  Similarity=0.019  Sum_probs=66.4

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~  101 (133)
                      ++.+|.+||.++.+++++.+|+. .+++++|+.++..++++..++..+.. ++..+..+++.+.|-...-+..+.... .
T Consensus       137 ~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~-~  214 (323)
T 1sxj_B          137 STRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV-A  214 (323)
T ss_dssp             TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-H
T ss_pred             CceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-h
Confidence            67888899999999999999987 89999999999999999988654333 355678899998774433333332222 1


Q ss_pred             HhcCCCCCCHHHHHHHHH
Q psy15623        102 FCGKNSTPSQPKLLQAER  119 (133)
Q Consensus       102 ~~~~~~~i~~~dl~~a~~  119 (133)
                      .   ...++.+++.+.+.
T Consensus       215 ~---~~~i~~~~v~~~~~  229 (323)
T 1sxj_B          215 G---HGLVNADNVFKIVD  229 (323)
T ss_dssp             H---HSSBCHHHHHHHHT
T ss_pred             c---CCCcCHHHHHHHHC
Confidence            1   13577777776654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.97  E-value=0.00012  Score=55.86  Aligned_cols=100  Identities=10%  Similarity=0.012  Sum_probs=73.1

Q ss_pred             cEEEEEeeCCC---CCCCHHHHhcccc-EEEcCCCCHHHHHHHHHHHHhc---CCCCChhcHHHHHHHcCCC--------
Q psy15623         23 SIVILGASNFP---WNIDDAFLRRLEK-RIYVPLPSSSGRQELLRLILRQ---VDLASDLDLELVSDQLEGN--------   87 (133)
Q Consensus        23 ~v~vi~aTn~~---~~lD~al~rRfd~-~i~i~~P~~~~R~~il~~~~~~---~~~~~~~~~~~la~~t~G~--------   87 (133)
                      ++.+|++||.+   +.+++.+.+||.. .+++++++.++..++++..+..   ...-++..+..+++.+.+.        
T Consensus       159 ~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G  238 (389)
T 1fnn_A          159 RIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG  238 (389)
T ss_dssp             CEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred             CEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC
Confidence            78999999988   7899999999986 8999999999999999998864   1122455678899999422        


Q ss_pred             CHHHHHHHHHHHHHH--hcCCCCCCHHHHHHHHHhhh
Q psy15623         88 AVQQKVMKSYTKKTF--CGKNSTPSQPKLLQAERPFR  122 (133)
Q Consensus        88 sgadi~~~~~~~~~~--~~~~~~i~~~dl~~a~~~~~  122 (133)
                      .+..+...+..+...  ..+...++.+++..+.....
T Consensus       239 ~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~  275 (389)
T 1fnn_A          239 DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL  275 (389)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence            344444444333332  23556799999998876543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.88  E-value=0.00011  Score=58.60  Aligned_cols=86  Identities=10%  Similarity=0.095  Sum_probs=64.2

Q ss_pred             CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHc-CCCCHHHHHHHHHHHHH--HhcCCCC
Q psy15623         33 PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQL-EGNAVQQKVMKSYTKKT--FCGKNST  108 (133)
Q Consensus        33 ~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t-~G~sgadi~~~~~~~~~--~~~~~~~  108 (133)
                      |+.|+|.+++||.. +.+++|+.++..++++..+...... ++..+..+++.+ .| +++....++..+..  ...+...
T Consensus       347 ~~~l~~~i~sR~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~  424 (456)
T 2c9o_A          347 PHGIPLDLLDRVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDS  424 (456)
T ss_dssp             ETTCCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSS
T ss_pred             cccCChhHHhhcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCc
Confidence            88999999999988 5999999999999999887543332 344567788887 66 66666554444333  3356778


Q ss_pred             CCHHHHHHHHHh
Q psy15623        109 PSQPKLLQAERP  120 (133)
Q Consensus       109 i~~~dl~~a~~~  120 (133)
                      ++.+|+.+++.-
T Consensus       425 v~~~~v~~~~~~  436 (456)
T 2c9o_A          425 IEKEHVEEISEL  436 (456)
T ss_dssp             BCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            999999998763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.83  E-value=1.9e-05  Score=59.01  Aligned_cols=73  Identities=12%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             cEEEEEeeCC--------------------------CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC-------
Q psy15623         23 SIVILGASNF--------------------------PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------   69 (133)
Q Consensus        23 ~v~vi~aTn~--------------------------~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~-------   69 (133)
                      ++++|+|||.                          ...++|++++||+..+.+++|+.+++..|++.++...       
T Consensus       160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~  239 (311)
T 4fcw_A          160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK  239 (311)
T ss_dssp             TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred             CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            6789999998                          5578999999999999999999999999999988542       


Q ss_pred             --CCC-ChhcHHHHHHHcC--CCCHHHHHHH
Q psy15623         70 --DLA-SDLDLELVSDQLE--GNAVQQKVMK   95 (133)
Q Consensus        70 --~~~-~~~~~~~la~~t~--G~sgadi~~~   95 (133)
                        ... ++..+..|++..-  ...+++|...
T Consensus       240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~  270 (311)
T 4fcw_A          240 RISLELTEAAKDFLAERGYDPVFGARPLRRV  270 (311)
T ss_dssp             TCEEEECHHHHHHHHHHSCBTTTBTTTHHHH
T ss_pred             CcEEEeCHHHHHHHHHhCCCccCCchhHHHH
Confidence              111 3445677777665  5677888643

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.81  E-value=4.7e-05  Score=64.03  Aligned_cols=98  Identities=11%  Similarity=0.170  Sum_probs=67.7

Q ss_pred             cEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCC-ChhcHHHHHHHcCC-----C
Q psy15623         23 SIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQLEG-----N   87 (133)
Q Consensus        23 ~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~-~~~~~~~la~~t~G-----~   87 (133)
                      .+.+|++||.+     ..+|+++.|||+ .++++.|+.++|.+||+.+...    ..+. .+..+..++..+.|     +
T Consensus       315 ~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~  393 (758)
T 1r6b_X          315 KIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH  393 (758)
T ss_dssp             CCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred             CeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccc
Confidence            78899999975     368999999998 7999999999999999988754    2222 34456777777655     4


Q ss_pred             CHHHHHHHHHHHHHH--h----cCCCCCCHHHHHHHHHhh
Q psy15623         88 AVQQKVMKSYTKKTF--C----GKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        88 sgadi~~~~~~~~~~--~----~~~~~i~~~dl~~a~~~~  121 (133)
                      .+..+..++..+...  .    .....++.+|+.+++..+
T Consensus       394 lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~  433 (758)
T 1r6b_X          394 LPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI  433 (758)
T ss_dssp             TTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence            444554333222221  1    234678889998887654

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.74  E-value=7e-05  Score=60.79  Aligned_cols=90  Identities=16%  Similarity=0.102  Sum_probs=58.9

Q ss_pred             EEEEeeCCCCC---CCHHHHhccccEEEcCCCCH-HHHHHHHHHHHh-------------------------cCCCCChh
Q psy15623         25 VILGASNFPWN---IDDAFLRRLEKRIYVPLPSS-SGRQELLRLILR-------------------------QVDLASDL   75 (133)
Q Consensus        25 ~vi~aTn~~~~---lD~al~rRfd~~i~i~~P~~-~~R~~il~~~~~-------------------------~~~~~~~~   75 (133)
                      ++|+|||.+..   ..+++++||..++++++|+. ++|..|++....                         +..++ +.
T Consensus       151 ~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~  229 (500)
T 3nbx_X          151 LLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DH  229 (500)
T ss_dssp             EEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HH
T ss_pred             hhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hH
Confidence            57888886332   45699999999999999987 788999876542                         11222 11


Q ss_pred             cHHHHHHHc---------CCCCHHHHHHHHHH--HHHHhcCCCCCCHHHHH
Q psy15623         76 DLELVSDQL---------EGNAVQQKVMKSYT--KKTFCGKNSTPSQPKLL  115 (133)
Q Consensus        76 ~~~~la~~t---------~G~sgadi~~~~~~--~~~~~~~~~~i~~~dl~  115 (133)
                      -++.+++..         .|.|++.+......  +.+...++..++.+|+.
T Consensus       230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~  280 (500)
T 3nbx_X          230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI  280 (500)
T ss_dssp             HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred             HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence            234444333         58899988754333  33444666677777776

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.71  E-value=0.0002  Score=54.39  Aligned_cols=82  Identities=15%  Similarity=0.157  Sum_probs=63.1

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-C-hhcHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-S-DLDLELV   80 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~-~~~~~~l   80 (133)
                      +.|+..|+....        ++.+|.+||.++.+.+++.+|+ ..++|++|+.++...+++..+++.+.. + +..+..+
T Consensus       152 ~~L~~~le~~~~--------~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i  222 (354)
T 1sxj_E          152 AALRRTMEKYSK--------NIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRI  222 (354)
T ss_dssp             HHHHHHHHHSTT--------TEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHH
T ss_pred             HHHHHHHHhhcC--------CCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence            456666665432        5788888999999999999999 889999999999999999988654433 3 4558889


Q ss_pred             HHHcCCCCHHHHHH
Q psy15623         81 SDQLEGNAVQQKVM   94 (133)
Q Consensus        81 a~~t~G~sgadi~~   94 (133)
                      ++.+.| +.+++..
T Consensus       223 ~~~~~G-~~r~a~~  235 (354)
T 1sxj_E          223 AQASNG-NLRVSLL  235 (354)
T ss_dssp             HHHHTT-CHHHHHH
T ss_pred             HHHcCC-CHHHHHH
Confidence            998876 4444443

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.49  E-value=0.00067  Score=54.85  Aligned_cols=92  Identities=10%  Similarity=0.089  Sum_probs=59.4

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc--CCCCChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ--VDLASDLDLELVSDQLEGNAVQQKVMKSYTKK  100 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~  100 (133)
                      ++++++++.....+++  ++|+...++|+.|+.+++.+++...+..  ..++. ..+..|++.+.|    |+........
T Consensus       181 ~iIli~~~~~~~~l~~--l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s~G----diR~~i~~L~  253 (516)
T 1sxj_A          181 PLILICNERNLPKMRP--FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTTRG----DIRQVINLLS  253 (516)
T ss_dssp             CEEEEESCTTSSTTGG--GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHTTT----CHHHHHHHHT
T ss_pred             CEEEEEcCCCCccchh--hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC----cHHHHHHHHH
Confidence            5666666655555654  3566669999999999999999887754  44443 448889998865    4433222222


Q ss_pred             HHhcCCCCCCHHHHHHHHHhh
Q psy15623        101 TFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus       101 ~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      ..+.....++.+++.+++...
T Consensus       254 ~~~~~~~~It~~~v~~~~~~~  274 (516)
T 1sxj_A          254 TISTTTKTINHENINEISKAW  274 (516)
T ss_dssp             HHHHHSSCCCTTHHHHHHHHH
T ss_pred             HHHhcCCCCchHHHHHHHHhh
Confidence            223344568877777665533

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.44  E-value=0.00064  Score=51.88  Aligned_cols=73  Identities=15%  Similarity=0.086  Sum_probs=56.6

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      |.||..|+.-.        +++++|.+||.++.++|++++|+. .++|++|+.++..++++...   .+ ++..+..+++
T Consensus       126 naLLk~lEep~--------~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~  192 (334)
T 1a5t_A          126 NALLKTLEEPP--------AETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALR  192 (334)
T ss_dssp             HHHHHHHTSCC--------TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHH
T ss_pred             HHHHHHhcCCC--------CCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHH
Confidence            56777776432        378888899999999999999985 79999999999999988765   22 3455677888


Q ss_pred             HcCCCC
Q psy15623         83 QLEGNA   88 (133)
Q Consensus        83 ~t~G~s   88 (133)
                      .+.|--
T Consensus       193 ~s~G~~  198 (334)
T 1a5t_A          193 LSAGSP  198 (334)
T ss_dssp             HTTTCH
T ss_pred             HcCCCH
Confidence            887643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.44  E-value=4.3e-05  Score=52.21  Aligned_cols=39  Identities=26%  Similarity=0.456  Sum_probs=35.4

Q ss_pred             cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHH
Q psy15623         23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELL   62 (133)
Q Consensus        23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il   62 (133)
                      ++.+|++||.++     .+|+++.+||+ .+++++|+.++|.+||
T Consensus       151 ~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          151 ELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             SCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred             CeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence            678999999887     79999999999 6999999999999876

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.33  E-value=0.0014  Score=49.85  Aligned_cols=63  Identities=13%  Similarity=0.115  Sum_probs=49.8

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCC
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEG   86 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G   86 (133)
                      .+.+|.+||.++.+.+++.+|+. .+.++.|+.++..+++...++...+. ++..+..+++.+.|
T Consensus       140 ~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G  203 (340)
T 1sxj_C          140 NTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG  203 (340)
T ss_dssp             TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred             CeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence            56777889999999999999997 78999999999999998888543332 34456778887765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.30  E-value=0.00038  Score=58.64  Aligned_cols=93  Identities=16%  Similarity=0.149  Sum_probs=61.4

Q ss_pred             HHHHHHHhhCCCCCC---CCCCCCcEEEEEeeCCCCC------------CCHHHHhccccEEEcCCCCHHHHHHHHHHHH
Q psy15623          2 KSELLCHMDGIASTT---NADPTKSIVILGASNFPWN------------IDDAFLRRLEKRIYVPLPSSSGRQELLRLIL   66 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~---~~~~~~~v~vi~aTn~~~~------------lD~al~rRfd~~i~i~~P~~~~R~~il~~~~   66 (133)
                      .+.||+.||.-.-..   ......++++|+|||.+..            ++|+++.|||..|.|++|+.+++..|++.++
T Consensus       596 ~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l  675 (758)
T 3pxi_A          596 FNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS  675 (758)
T ss_dssp             HHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence            466788887522100   0112236899999998765            8999999999999999999999999999888


Q ss_pred             hcC-------CCC---ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623         67 RQV-------DLA---SDLDLELVSDQL--EGNAVQQKVM   94 (133)
Q Consensus        67 ~~~-------~~~---~~~~~~~la~~t--~G~sgadi~~   94 (133)
                      ...       ...   ++.-++.|++..  ..+..++|..
T Consensus       676 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~  715 (758)
T 3pxi_A          676 DQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRR  715 (758)
T ss_dssp             HHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHH
T ss_pred             HHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHH
Confidence            542       111   333456676643  3456667754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.23  E-value=0.00037  Score=58.55  Aligned_cols=93  Identities=15%  Similarity=0.140  Sum_probs=63.8

Q ss_pred             HHHHHHHhhCCCCC--CCC-CCCCcEEEEEeeCCCC-------------------------CCCHHHHhccccEEEcCCC
Q psy15623          2 KSELLCHMDGIAST--TNA-DPTKSIVILGASNFPW-------------------------NIDDAFLRRLEKRIYVPLP   53 (133)
Q Consensus         2 ~~~lL~~lD~~~~~--~~~-~~~~~v~vi~aTn~~~-------------------------~lD~al~rRfd~~i~i~~P   53 (133)
                      .+.|++.||.-.-.  .+. -.-.++++|+|||.+.                         .++|++++|||..|.|++|
T Consensus       574 ~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l  653 (758)
T 1r6b_X          574 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL  653 (758)
T ss_dssp             HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCC
T ss_pred             HHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCC
Confidence            46777888742110  000 0002689999999865                         6899999999999999999


Q ss_pred             CHHHHHHHHHHHHhcC---------CCC-ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623         54 SSSGRQELLRLILRQV---------DLA-SDLDLELVSDQL--EGNAVQQKVM   94 (133)
Q Consensus        54 ~~~~R~~il~~~~~~~---------~~~-~~~~~~~la~~t--~G~sgadi~~   94 (133)
                      +.+++..|++.++...         .+. ++.-++.|++..  .++++++|..
T Consensus       654 ~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~  706 (758)
T 1r6b_X          654 STDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMAR  706 (758)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHH
Confidence            9999999999988632         111 234466677655  3566778764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.06  E-value=0.0011  Score=56.59  Aligned_cols=71  Identities=18%  Similarity=0.272  Sum_probs=52.9

Q ss_pred             cEEEEEeeCCCC----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC----CCC-ChhcHHHHHHHcC-----CCC
Q psy15623         23 SIVILGASNFPW----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV----DLA-SDLDLELVSDQLE-----GNA   88 (133)
Q Consensus        23 ~v~vi~aTn~~~----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~----~~~-~~~~~~~la~~t~-----G~s   88 (133)
                      .+.+|++||.++    .+|+++.|||+. ++++.|+.+++.+||+.++...    .+. .+..+..+++.+.     +|.
T Consensus       299 ~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~l  377 (854)
T 1qvr_A          299 ELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRL  377 (854)
T ss_dssp             CCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCT
T ss_pred             CeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccC
Confidence            678999999875    589999999996 9999999999999999877532    222 3444666776654     455


Q ss_pred             HHHHHH
Q psy15623         89 VQQKVM   94 (133)
Q Consensus        89 gadi~~   94 (133)
                      +.....
T Consensus       378 p~kai~  383 (854)
T 1qvr_A          378 PDKAID  383 (854)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            555543

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=96.94  E-value=0.00081  Score=63.73  Aligned_cols=45  Identities=24%  Similarity=0.453  Sum_probs=41.8

Q ss_pred             cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623         23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ   68 (133)
Q Consensus        23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~   68 (133)
                      ++.+|||||.|.     .|||+++||| ..++++.|+.+++..|++.+++.
T Consensus      1384 ~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A         1384 RIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp             SEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred             CEEEEEecCCCccCCCccCChhhhhee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence            589999999994     8999999999 88999999999999999999864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.68  E-value=0.011  Score=45.23  Aligned_cols=59  Identities=14%  Similarity=0.149  Sum_probs=42.7

Q ss_pred             CCHHHHhccccEEEcCCCCHHHHHHHHHH----HHhc-------CCCC---ChhcHHHHHHHc--CCCCHHHHHH
Q psy15623         36 IDDAFLRRLEKRIYVPLPSSSGRQELLRL----ILRQ-------VDLA---SDLDLELVSDQL--EGNAVQQKVM   94 (133)
Q Consensus        36 lD~al~rRfd~~i~i~~P~~~~R~~il~~----~~~~-------~~~~---~~~~~~~la~~t--~G~sgadi~~   94 (133)
                      ++|+++.||+..+.+++|+.+.+.+|+..    +++.       ....   ++.-++.|++.+  ..+.+++|.+
T Consensus       239 ~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~  313 (363)
T 3hws_A          239 LIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRS  313 (363)
T ss_dssp             CCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHH
T ss_pred             CCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHH
Confidence            78999999999999999999999999986    3321       1211   344467777643  4566788875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.62  E-value=0.0032  Score=53.82  Aligned_cols=94  Identities=15%  Similarity=0.149  Sum_probs=64.4

Q ss_pred             HHHHHHHhhCCCCCCCCC---CCCcEEEEEeeCC--------------------------CCCCCHHHHhccccEEEcCC
Q psy15623          2 KSELLCHMDGIASTTNAD---PTKSIVILGASNF--------------------------PWNIDDAFLRRLEKRIYVPL   52 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~---~~~~v~vi~aTn~--------------------------~~~lD~al~rRfd~~i~i~~   52 (133)
                      .+.||+.||.-.-.++..   .-.++++|+|||.                          ...+.|+++.||+..+.+.+
T Consensus       677 ~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~p  756 (854)
T 1qvr_A          677 FNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP  756 (854)
T ss_dssp             HHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCC
T ss_pred             HHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCC
Confidence            467788887432111000   0126889999997                          23578899999999999999


Q ss_pred             CCHHHHHHHHHHHHhcC---------CCC-ChhcHHHHHHHcC--CCCHHHHHHH
Q psy15623         53 PSSSGRQELLRLILRQV---------DLA-SDLDLELVSDQLE--GNAVQQKVMK   95 (133)
Q Consensus        53 P~~~~R~~il~~~~~~~---------~~~-~~~~~~~la~~t~--G~sgadi~~~   95 (133)
                      |+.++...|++.++...         .+. ++.-++.|++..-  .+..++|...
T Consensus       757 l~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~  811 (854)
T 1qvr_A          757 LTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRV  811 (854)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHH
Confidence            99999999999888631         111 3444677777765  5677888643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.34  E-value=0.0015  Score=44.29  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=27.5

Q ss_pred             cEEEEEeeCCCC-----CCCHHHHhccccEEEcCCCC
Q psy15623         23 SIVILGASNFPW-----NIDDAFLRRLEKRIYVPLPS   54 (133)
Q Consensus        23 ~v~vi~aTn~~~-----~lD~al~rRfd~~i~i~~P~   54 (133)
                      ++++|++||.+.     .+|+++.+||+. +++++|+
T Consensus       152 ~~~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~  187 (187)
T 2p65_A          152 ELRCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQPS  187 (187)
T ss_dssp             CSCEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred             CeeEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence            688999999875     699999999995 9999986

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.33  E-value=0.043  Score=41.95  Aligned_cols=98  Identities=13%  Similarity=0.033  Sum_probs=66.5

Q ss_pred             cEEEEEeeCCCC---CCC---HHHHhccccEEEcCCCCHHHHHHHHHHHHhcC---CCCChhcHHHHHHHcC------CC
Q psy15623         23 SIVILGASNFPW---NID---DAFLRRLEKRIYVPLPSSSGRQELLRLILRQV---DLASDLDLELVSDQLE------GN   87 (133)
Q Consensus        23 ~v~vi~aTn~~~---~lD---~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~---~~~~~~~~~~la~~t~------G~   87 (133)
                      ++.+|++||.++   .++   +.+.+||...+++++++.++..+++...+...   ...++..+..+++.|.      |.
T Consensus       179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~  258 (412)
T 1w5s_A          179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS  258 (412)
T ss_dssp             BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred             eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCc
Confidence            899999998776   344   66777887779999999999999998776531   1123455788899998      75


Q ss_pred             CHHHHHHHHHHHH--HHhcCCCCCCHHHHHHHHHhh
Q psy15623         88 AVQQKVMKSYTKK--TFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        88 sgadi~~~~~~~~--~~~~~~~~i~~~dl~~a~~~~  121 (133)
                       +..+..++..+.  +...+...++.+++..++...
T Consensus       259 -p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~  293 (412)
T 1w5s_A          259 -ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN  293 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence             444443333222  223455568888887776544

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.31  E-value=0.014  Score=47.91  Aligned_cols=97  Identities=13%  Similarity=0.241  Sum_probs=65.1

Q ss_pred             cEEEEEeeCCC--CCCCHHHHhccc---cEEEcCC--C-CHHHHHHHHHHHHhcC------CCCChhcHHHHHHHc---C
Q psy15623         23 SIVILGASNFP--WNIDDAFLRRLE---KRIYVPL--P-SSSGRQELLRLILRQV------DLASDLDLELVSDQL---E   85 (133)
Q Consensus        23 ~v~vi~aTn~~--~~lD~al~rRfd---~~i~i~~--P-~~~~R~~il~~~~~~~------~~~~~~~~~~la~~t---~   85 (133)
                      ++.||+|||+.  +.++|++++||+   ..+.++.  | ..+....+++.+.+..      ..-++.-+..|.+..   .
T Consensus       252 ~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~  331 (604)
T 3k1j_A          252 DFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRA  331 (604)
T ss_dssp             CCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTT
T ss_pred             eEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhh
Confidence            67899999986  689999999997   4565542  2 4556666665554321      111334456666544   5


Q ss_pred             CC------CHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHH
Q psy15623         86 GN------AVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAER  119 (133)
Q Consensus        86 G~------sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~~  119 (133)
                      |-      +.+++.+++..+...+  .++..++.+|+.+|+.
T Consensus       332 g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~  373 (604)
T 3k1j_A          332 GRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVK  373 (604)
T ss_dssp             CSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence            63      7899987655555444  5667899999999974

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.75  E-value=0.013  Score=44.42  Aligned_cols=53  Identities=11%  Similarity=0.046  Sum_probs=43.9

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLIL   66 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~   66 (133)
                      |.||..|+.-..        .+++|.+||.|+.|.|++.+|   .++|++|+.++..++++..+
T Consensus       100 naLLk~LEep~~--------~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A          100 NAFLKALEEPPE--------YAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             HHTHHHHHSCCT--------TEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCC--------CeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence            557777775433        678888888899999999999   99999999999999888776

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.018  Score=44.06  Aligned_cols=48  Identities=10%  Similarity=0.059  Sum_probs=40.0

Q ss_pred             CcEEEEEeeCCCCCCC----HHHHhccc-cEEEcCCCCHHHHHHHHHHHHhcC
Q psy15623         22 KSIVILGASNFPWNID----DAFLRRLE-KRIYVPLPSSSGRQELLRLILRQV   69 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD----~al~rRfd-~~i~i~~P~~~~R~~il~~~~~~~   69 (133)
                      .++++|+++|..+..+    +++.+||. .+|+|++++.++-.+|++.-++..
T Consensus       162 s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~  214 (318)
T 3te6_A          162 SKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL  214 (318)
T ss_dssp             CCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence            3899999999987644    44566997 689999999999999999988653

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.40  E-value=0.019  Score=43.25  Aligned_cols=91  Identities=12%  Similarity=0.080  Sum_probs=49.6

Q ss_pred             CcEEEEEeeCCC-------CCCCHHHHhccccEEEcCCCCHH----HHHHHHHHHHhc----CCC---C-ChhcHHHHHH
Q psy15623         22 KSIVILGASNFP-------WNIDDAFLRRLEKRIYVPLPSSS----GRQELLRLILRQ----VDL---A-SDLDLELVSD   82 (133)
Q Consensus        22 ~~v~vi~aTn~~-------~~lD~al~rRfd~~i~i~~P~~~----~R~~il~~~~~~----~~~---~-~~~~~~~la~   82 (133)
                      .++.+|+|||.+       ..+++.+..||. .+.+.+|...    +...+++.++..    ...   . ++.-+..|..
T Consensus       136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~  214 (304)
T 1ojl_A          136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH  214 (304)
T ss_dssp             CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred             CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence            468899999986       346778888886 5555555544    444566666543    211   1 2333555665


Q ss_pred             HcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHH
Q psy15623         83 QLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKL  114 (133)
Q Consensus        83 ~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl  114 (133)
                      ..-.-..++|.+....+...+.+ ..++.+|+
T Consensus       215 ~~wpGnvReL~~~l~~~~~~~~~-~~i~~~~l  245 (304)
T 1ojl_A          215 YDWPGNIRELENAIERAVVLLTG-EYISEREL  245 (304)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHCCS-SSBCGGGS
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC-CcccHHhh
Confidence            54112445666554444444432 33444433

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=95.31  E-value=0.16  Score=38.34  Aligned_cols=105  Identities=13%  Similarity=0.108  Sum_probs=63.0

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCC------CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-Chh
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFP------WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDL   75 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~------~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~   75 (133)
                      +.|+..++...+        .+++|.+|+.+      ..+-+++.+|. ..+++..|+.++....++..++..++. ++.
T Consensus        95 ~aLl~~le~p~~--------~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~  165 (343)
T 1jr3_D           95 EQLLTLTGLLHD--------DLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDA  165 (343)
T ss_dssp             HHHHHHHTTCBT--------TEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHH
T ss_pred             HHHHHHHhcCCC--------CeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence            345656654432        34444444443      34667777777 478999999999999999988776544 345


Q ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q psy15623         76 DLELVSDQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        76 ~~~~la~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~  118 (133)
                      .+..|++.++| +.+++.+......... +...++.+++.+.+
T Consensus       166 a~~~l~~~~~g-dl~~~~~elekl~l~~-~~~~It~e~V~~~~  206 (343)
T 1jr3_D          166 ANQVLCYCYEG-NLLALAQALERLSLLW-PDGKLTLPRVEQAV  206 (343)
T ss_dssp             HHHHHHHSSTT-CHHHHHHHHHHHHHHC-TTCEECHHHHHHHH
T ss_pred             HHHHHHHHhch-HHHHHHHHHHHHHHhc-CCCCCCHHHHHHHH
Confidence            57778877765 4444433221111222 34467877776553

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=94.92  E-value=0.62  Score=37.80  Aligned_cols=102  Identities=13%  Similarity=0.006  Sum_probs=60.3

Q ss_pred             cEEEEEeeCCCC-----------CCCHHHHhccccEEE-cCCCCHHHH---------HHHHHHHH---h-c--CCCCChh
Q psy15623         23 SIVILGASNFPW-----------NIDDAFLRRLEKRIY-VPLPSSSGR---------QELLRLIL---R-Q--VDLASDL   75 (133)
Q Consensus        23 ~v~vi~aTn~~~-----------~lD~al~rRfd~~i~-i~~P~~~~R---------~~il~~~~---~-~--~~~~~~~   75 (133)
                      ++.||||+|...           .|+++++.|||..+. .+.|+.+.-         .+.++.+.   + .  .+.-++.
T Consensus       339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e  418 (506)
T 3f8t_A          339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE  418 (506)
T ss_dssp             CCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH
T ss_pred             CeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH
Confidence            789999999865           899999999997655 466765442         12233222   3 1  1111221


Q ss_pred             cHHHHHH-----------------HcCCCCHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHhhhhc
Q psy15623         76 DLELVSD-----------------QLEGNAVQQKVMK--SYTKKTFCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus        76 ~~~~la~-----------------~t~G~sgadi~~~--~~~~~~~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ..+.|++                 ..-|.|++.+..+  .+.+.+....+..++.+|+.+|++-++.|
T Consensus       419 a~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~S  486 (506)
T 3f8t_A          419 ARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWY  486 (506)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHH
Confidence            1111110                 2458899999865  44444555788899999999998866554

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.52  E-value=0.064  Score=41.07  Aligned_cols=84  Identities=10%  Similarity=0.046  Sum_probs=50.4

Q ss_pred             CCCHHHHhccccEEEcCCCCHHHHHHHHHH----HHh---------cCCCC-ChhcHHHHHHHcC--CCCHHHHHHHHHH
Q psy15623         35 NIDDAFLRRLEKRIYVPLPSSSGRQELLRL----ILR---------QVDLA-SDLDLELVSDQLE--GNAVQQKVMKSYT   98 (133)
Q Consensus        35 ~lD~al~rRfd~~i~i~~P~~~~R~~il~~----~~~---------~~~~~-~~~~~~~la~~t~--G~sgadi~~~~~~   98 (133)
                      .+.|++..||+..+.|++++.++...|+..    +++         +..+. ++.-+..|++...  +..+++|...+..
T Consensus       255 ~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~  334 (376)
T 1um8_A          255 GLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED  334 (376)
T ss_dssp             TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred             CCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence            367888889999999999999999999962    221         11111 3344677777743  3567787643222


Q ss_pred             HHH-----Hhc---CCCCCCHHHHHHHH
Q psy15623         99 KKT-----FCG---KNSTPSQPKLLQAE  118 (133)
Q Consensus        99 ~~~-----~~~---~~~~i~~~dl~~a~  118 (133)
                      +..     ...   ....|+.+++.+..
T Consensus       335 ~~~~~~~~~~~~~~~~~~i~~~~v~~~~  362 (376)
T 1um8_A          335 FCLDIMFDLPKLKGSEVRITKDCVLKQA  362 (376)
T ss_dssp             HHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred             HHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence            111     111   12257777776554

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.13  E-value=0.061  Score=39.01  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=48.2

Q ss_pred             cEEEEEeeCCC-------CCCCHHHHhccccEEEcCCCCHH----HHHHHHHHHHhc----CCCC-----ChhcHHHHHH
Q psy15623         23 SIVILGASNFP-------WNIDDAFLRRLEKRIYVPLPSSS----GRQELLRLILRQ----VDLA-----SDLDLELVSD   82 (133)
Q Consensus        23 ~v~vi~aTn~~-------~~lD~al~rRfd~~i~i~~P~~~----~R~~il~~~~~~----~~~~-----~~~~~~~la~   82 (133)
                      ++.+|+|||.+       ..+++++.+||.. +.+.+|...    +...+++.+++.    ....     ++..++.|..
T Consensus       141 ~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~  219 (265)
T 2bjv_A          141 NVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLN  219 (265)
T ss_dssp             CCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHH
T ss_pred             CeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHh
Confidence            67899999985       3578999999974 344444444    444555555432    2221     2233444544


Q ss_pred             HcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHH
Q psy15623         83 QLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKL  114 (133)
Q Consensus        83 ~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl  114 (133)
                      ..-.-..++|.+....+...+.+ ..++.+|+
T Consensus       220 ~~~~gn~reL~~~l~~~~~~~~~-~~i~~~~l  250 (265)
T 2bjv_A          220 YRWPGNIRELKNVVERSVYRHGT-SDYPLDDI  250 (265)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHHCC-SSSCBCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC-CcCcHHHc
Confidence            33222445666554444444432 34554444

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=92.52  E-value=0.18  Score=40.29  Aligned_cols=61  Identities=20%  Similarity=0.270  Sum_probs=43.8

Q ss_pred             HHHHHHhhCCCCCC--CCCCCCcEEEEEee----CCCCCCCHHHHhccccEEEcCCCCHHHHHHHHH
Q psy15623          3 SELLCHMDGIASTT--NADPTKSIVILGAS----NFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLR   63 (133)
Q Consensus         3 ~~lL~~lD~~~~~~--~~~~~~~v~vi~aT----n~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~   63 (133)
                      ..||.-||+-..+.  ..-..++|++|+|.    +.|.++-|.++.||+.+++++..+.++..+|+.
T Consensus       280 ~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~lt~~e~~~Il~  346 (444)
T 1g41_A          280 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT  346 (444)
T ss_dssp             HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHH
T ss_pred             HHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCCCCHHHHHHHHH
Confidence            46888888742110  00012378999887    245556688999999999999999999999993

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=86.02  E-value=1.4  Score=43.10  Aligned_cols=45  Identities=29%  Similarity=0.440  Sum_probs=40.0

Q ss_pred             cEEEEEeeCCC-----CCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc
Q psy15623         23 SIVILGASNFP-----WNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ   68 (133)
Q Consensus        23 ~v~vi~aTn~~-----~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~   68 (133)
                      ++.+|||.|.|     ..|+++++|||-. +.++.|+.++-..|+..++..
T Consensus      1422 d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A         1422 KIQFVGACNPPTDAGRVQLTHRFLRHAPI-LLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp             SEEEEEEECCTTSTTCCCCCHHHHTTCCE-EECCCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCCCCccCCHHHHhhceE-EEeCCCCHHHHHHHHHHHHHH
Confidence            67899999988     4699999999987 999999999999998877654

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=82.95  E-value=0.95  Score=31.91  Aligned_cols=36  Identities=17%  Similarity=0.099  Sum_probs=29.7

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGR   58 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R   58 (133)
                      ++-+|.+|+.+..||.++.+|++.+++++.|....+
T Consensus       123 ~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~~~  158 (199)
T 2r2a_A          123 GIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMR  158 (199)
T ss_dssp             TCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSCCE
T ss_pred             CeEEEEECCCHHHHhHHHHHHhheEEEEcCcccCcc
Confidence            566788888899999998889999999988754433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	3e-20
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	1e-18
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	4e-10
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	4e-08

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 80.7 bits (199), Expect = 3e-20
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
             ++LL  MDG    T       IV++ A+N P  +D A LR  R +++I +  P   GR
Sbjct: 131 TLNQLLVEMDGFEKDTA------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 184

Query: 59  QELLRLILRQVDLASDLDLELVSDQLEG 86
           +++LR+  R   LA D+DL L++ +  G
Sbjct: 185 EQILRIHARGKPLAEDVDLALLAKRTPG 212

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 76.8 bits (189), Expect = 1e-18
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 8/88 (9%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
             +++L  MDG            I+++ A+N P  +D A LR  R ++++ V LP   GR
Sbjct: 134 TLNQMLVEMDGFEGNEG------IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187

Query: 59  QELLRLILRQVDLASDLDLELVSDQLEG 86
           +++L++ +R+V LA D+D  +++    G
Sbjct: 188 EQILKVHMRRVPLAPDIDAAIIARGTPG 215

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (127), Expect = 4e-10
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 8/88 (9%)

Query: 1   MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGR 58
           + +++L  MDG+++  N      + I+GA+N P  ID A LR  RL++ IY+PLP    R
Sbjct: 130 VINQILTEMDGMSTKKN------VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 183

Query: 59  QELLRLILRQVDLASDLDLELVSDQLEG 86
             +L+  LR+  +A D+DLE ++    G
Sbjct: 184 VAILKANLRKSPVAKDVDLEFLAKMTNG 211

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 48.0 bits (113), Expect = 4e-08
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 24  IVILGASNFPWNIDDAFLR-RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD 82
           ++I+G ++    + +  +       I+VP    +  ++LL   L  +    D +   ++ 
Sbjct: 144 LLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI--ATGEQLLE-ALELLGNFKDKERTTIAQ 200

Query: 83  QLEG 86
           Q++G
Sbjct: 201 QVKG 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.93
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.92
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.9
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.85
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.15
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.89
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.81
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.42
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.31
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.27
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.23
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.19
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.15
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.1
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.04
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.03
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.99
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.75
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.59
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.51
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.7
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.31
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.97
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.81
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.25
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	82.01

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.3e-25  Score=165.81  Aligned_cols=114  Identities=25%  Similarity=0.423  Sum_probs=102.8

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||++||++.+++      +|+||||||+|+.||||++|  |||++|+|++|+.++|.+||+.++++.++..++++..
T Consensus       135 ~~~ll~~~d~~~~~~------~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~  208 (256)
T d1lv7a_         135 LNQMLVEMDGFEGNE------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAI  208 (256)
T ss_dssp             HHHHHHHHHTCCSSS------CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred             HHHHHHHhhCCCCCC------CEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHH
Confidence            678999999998765      89999999999999999999  9999999999999999999999999998888999999


Q ss_pred             HHHHcCCCCHHHHHHHHHH--HHHHhcCCCCCCHHHHHHHHHhh
Q psy15623         80 VSDQLEGNAVQQKVMKSYT--KKTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~--~~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      +++.|+||||+||..++..  ..+...+...++.+||..|++.+
T Consensus       209 la~~t~G~s~adi~~l~~~A~~~a~~~~~~~i~~~d~~~Al~rv  252 (256)
T d1lv7a_         209 IARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI  252 (256)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence            9999999999999876544  34455777789999999998653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=5.1e-25  Score=163.15  Aligned_cols=111  Identities=29%  Similarity=0.394  Sum_probs=100.1

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      +++||++||++.++.      +|+||||||+|+.||++++|  |||.+|+|++|+.++|.+||+.++++.+...++++..
T Consensus       132 ~~~ll~~~d~~~~~~------~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~  205 (247)
T d1ixza_         132 LNQLLVEMDGFEKDT------AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL  205 (247)
T ss_dssp             HHHHHHHHHTCCTTC------CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred             HHHHHHHhhCCCCCC------CEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHH
Confidence            688999999998765      99999999999999999998  9999999999999999999999999988888999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHH--HHHhcCCCCCCHHHHHHHH
Q psy15623         80 VSDQLEGNAVQQKVMKSYTK--KTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~--~~~~~~~~~i~~~dl~~a~  118 (133)
                      ||+.|+||||+||..++..+  .+...+...++.+||.+|+
T Consensus       206 la~~t~g~s~~di~~lv~~A~l~a~~~~~~~i~~~d~~~A~  246 (247)
T d1ixza_         206 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA  246 (247)
T ss_dssp             HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHhh
Confidence            99999999999998765544  3345677889999999885

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.6e-24  Score=158.48  Aligned_cols=112  Identities=25%  Similarity=0.410  Sum_probs=96.1

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      ++.++..+++.....      +|+||||||+|+.||||++|  |||++|+|++|+.++|.+||+.++++.++..++++..
T Consensus       125 ~~~~~~~~~~~~~~~------~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~  198 (258)
T d1e32a2         125 VSQLLTLMDGLKQRA------HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQ  198 (258)
T ss_dssp             HHHHHHHHHTCCCSS------CEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHH
T ss_pred             HHHhccccccccccC------CccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhh
Confidence            567888899887766      89999999999999999999  9999999999999999999999999988888999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHHh--c-----------------CCCCCCHHHHHHHHH
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKTFC--G-----------------KNSTPSQPKLLQAER  119 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~~~--~-----------------~~~~i~~~dl~~a~~  119 (133)
                      ||++|+||||+||..++..+...+  .                 ....++.+||..|+.
T Consensus       199 la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~  257 (258)
T d1e32a2         199 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS  257 (258)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCCBHHHHHHCCBCHHHHHHHHT
T ss_pred             hhhcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhccCccCHHHHHHHhC
Confidence            999999999999987654432221  1                 123578899998875

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.8e-22  Score=149.41  Aligned_cols=94  Identities=33%  Similarity=0.536  Sum_probs=78.0

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLEL   79 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~   79 (133)
                      ++.||++||++.++.      +|+||||||+|+.||||++|  |||++|+|++|+.++|.+||+.++++.+...+++++.
T Consensus       131 ~~~ll~~l~~~~~~~------~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~  204 (265)
T d1r7ra3         131 INQILTEMDGMSTKK------NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF  204 (265)
T ss_dssp             HHHHHHTCC------------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHH
T ss_pred             HHHHHHHhhCcCCCC------CEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHH
Confidence            588999999998765      89999999999999999998  9999999999999999999999999988888899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHH
Q psy15623         80 VSDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        80 la~~t~G~sgadi~~~~~~~~~  101 (133)
                      ||++|+||||+||..++..+..
T Consensus       205 la~~t~g~s~~di~~lv~~A~~  226 (265)
T d1r7ra3         205 LAKMTNGFSGADLTEICQRACK  226 (265)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHHH
Confidence            9999999999999876655433

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.15  E-value=4.6e-12  Score=92.58  Aligned_cols=112  Identities=14%  Similarity=0.136  Sum_probs=73.4

Q ss_pred             HHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHH-hccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHH
Q psy15623          2 KSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFL-RRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELV   80 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~-rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l   80 (133)
                      +++|+..||+....     ..+|+||||||+|+.+|++.+ +||+.+|++  |+..+|.+|++.+.....+ .+.++..+
T Consensus       127 ~~~ll~~l~~~~~~-----~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~--P~~~~r~~il~~l~~~~~~-~~~~~~~i  198 (246)
T d1d2na_         127 LQALLVLLKKAPPQ-----GRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIATGEQLLEALELLGNF-KDKERTTI  198 (246)
T ss_dssp             HHHHHHHTTCCCST-----TCEEEEEEEESCHHHHHHTTCTTTSSEEEEC--CCEEEHHHHHHHHHHHTCS-CHHHHHHH
T ss_pred             HHHHHHHhcCCCcc-----ccceeeeeccCChhhccchhhcCccceEEec--CCchhHHHHHHHHHhccCC-ChHHHHHH
Confidence            56889999988653     248999999999999998744 499999998  5555666777655444333 46778899


Q ss_pred             HHHcCCCCHH-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q psy15623         81 SDQLEGNAVQ-QKVMKSYTKKTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        81 a~~t~G~sga-di~~~~~~~~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                      ++.+.|.+.. .++.+.......+.........+++..+++-
T Consensus       199 ~~~~~g~~~~~~ik~ll~~ie~a~~~~~~~~~~~~l~~l~e~  240 (246)
T d1d2na_         199 AQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREE  240 (246)
T ss_dssp             HHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred             HHHcCCCccchhHHHHHHHHHHHHhcCcccHHHHHHHHHHhc
Confidence            9999886532 2333333333333333334455555555443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.89  E-value=1.6e-12  Score=98.54  Aligned_cols=63  Identities=19%  Similarity=0.236  Sum_probs=53.5

Q ss_pred             CHHHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHH----Hh--ccccEEEcCCCCHHHHHHHHHHHHhcCC
Q psy15623          1 MKSELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAF----LR--RLEKRIYVPLPSSSGRQELLRLILRQVD   70 (133)
Q Consensus         1 v~~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al----~r--Rfd~~i~i~~P~~~~R~~il~~~~~~~~   70 (133)
                      ++|+||++|||+....      +|+|||||| |+.+|+++    .|  |||++++++.|+.++|.+|++.+.+++.
T Consensus       210 ~v~~lL~e~dg~~~~~------~v~viaatN-~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il~~~~~~~~  278 (321)
T d1w44a_         210 GAFDLLSDIGAMAASR------GCVVIASLN-PTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQ  278 (321)
T ss_dssp             HHHHHHHHHHHHHHHH------TCEEEEECC-CCCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEEEEECBTTCC
T ss_pred             hhhhhhhhccccccCC------CeEEEEeCC-CcccccchhhhhhccCcccceeecCCCChHHHHHHHHHhccCcc
Confidence            3799999999998866      899999999 56555544    67  9999999999999999999988776653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=3.5e-08  Score=70.01  Aligned_cols=100  Identities=10%  Similarity=0.146  Sum_probs=79.0

Q ss_pred             CCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHH
Q psy15623         21 TKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTK   99 (133)
Q Consensus        21 ~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~   99 (133)
                      ..++++|++||++..+++++++||+..+.++.|+.+++..+++......+.. .+..+..+++.+.| +++++...+..+
T Consensus       132 ~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~  210 (238)
T d1in4a2         132 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV  210 (238)
T ss_dssp             -CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            3478999999999999999999999999999999999999999999876655 44558889988887 677776544433


Q ss_pred             HH--HhcCCCCCCHHHHHHHHHhh
Q psy15623        100 KT--FCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus       100 ~~--~~~~~~~i~~~dl~~a~~~~  121 (133)
                      ..  ...+...++.+.+.++++.+
T Consensus       211 ~~~~~~~~~~~it~~~~~~al~~l  234 (238)
T d1in4a2         211 RDMLTVVKADRINTDIVLKTMEVL  234 (238)
T ss_dssp             HHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCccCHHHHHHHHHhh
Confidence            32  23455568999888887643

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=3e-06  Score=59.80  Aligned_cols=99  Identities=10%  Similarity=0.060  Sum_probs=77.2

Q ss_pred             CcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623         22 KSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKK  100 (133)
Q Consensus        22 ~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~  100 (133)
                      +++++|++||++...+++.++|+...+.+..|+.+++..+++..+.+..+. +...+..+++.+.| +.+...+....+.
T Consensus       134 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d~R~a~~~l~~~~  212 (239)
T d1ixsb2         134 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR  212 (239)
T ss_dssp             CCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred             CCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999998776554 44568899999998 4555544333332


Q ss_pred             H--HhcCCCCCCHHHHHHHHHhh
Q psy15623        101 T--FCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus       101 ~--~~~~~~~i~~~dl~~a~~~~  121 (133)
                      .  ...+...++.+++.+++..+
T Consensus       213 ~~a~~~~~~~It~~~~~~~l~~l  235 (239)
T d1ixsb2         213 DFAQVAGEEVITRERALEALAAL  235 (239)
T ss_dssp             HHHTTSCCSCBCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcCHHHHHHHHhhh
Confidence            2  22556779999998887643

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=4.9e-06  Score=59.09  Aligned_cols=104  Identities=15%  Similarity=0.174  Sum_probs=75.6

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.|+..|+....        ++.+|++||.++.+.+++.+|+ ..+.++.|+.++-..++...+...+.. ++..++.|+
T Consensus       133 ~~Llk~lE~~~~--------~~~~il~tn~~~~i~~~i~SRc-~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~  203 (239)
T d1njfa_         133 NALLKTLEEPPE--------HVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA  203 (239)
T ss_dssp             HHHHHHHHSCCT--------TEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred             HHHHHHHhcCCC--------CeEEEEEcCCccccChhHhhhh-cccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHH
Confidence            567778875433        6789999999999999999999 579999999999999888887543332 455688899


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~a~  118 (133)
                      +.+.| +.+...+.+.  .....+...++.+++.+.+
T Consensus       204 ~~s~G-d~R~ain~l~--~~~~~~~~~I~~~~v~~~l  237 (239)
T d1njfa_         204 RAAEG-SLRDALSLTD--QAIASGDGQVSTQAVSAML  237 (239)
T ss_dssp             HHTTT-CHHHHHHHHH--HHHHHTTTSBCHHHHHHHH
T ss_pred             HHcCC-CHHHHHHHHH--HHHHhCCCCcCHHHHHHHh
Confidence            98887 4444333222  2233445668988887654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.27  E-value=3.5e-06  Score=59.12  Aligned_cols=100  Identities=13%  Similarity=0.129  Sum_probs=74.6

Q ss_pred             HHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHH
Q psy15623          4 ELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSD   82 (133)
Q Consensus         4 ~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~   82 (133)
                      .|+..++....        .+.+|++||.+..+++++.+||. .+.++.|+..+...+++..+.+.++. ++..++.|++
T Consensus       128 ~ll~~l~~~~~--------~~~~i~~~n~~~~i~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~  198 (231)
T d1iqpa2         128 ALRRTMEMFSS--------NVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY  198 (231)
T ss_dssp             HHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHH
T ss_pred             HHhhhcccCCc--------ceEEEeccCChhhchHhHhCccc-cccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            45555554432        67899999999999999999995 59999999999999999999876664 5666899999


Q ss_pred             HcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q psy15623         83 QLEGNAVQQKVMKSYTKKTFCGKNSTPSQPKLLQ  116 (133)
Q Consensus        83 ~t~G~sgadi~~~~~~~~~~~~~~~~i~~~dl~~  116 (133)
                      .+.| +++++.+.+..   .......++.+++..
T Consensus       199 ~~~g-diR~ai~~Lq~---~~~~~~~it~e~v~~  228 (231)
T d1iqpa2         199 IAEG-DMRRAINILQA---AAALDKKITDENVFM  228 (231)
T ss_dssp             HHTT-CHHHHHHHHHH---HHTTCSEECHHHHHH
T ss_pred             HcCC-CHHHHHHHHHH---HHHcCCCcCHHHHHh
Confidence            9887 55555433322   233345678887754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=4.2e-06  Score=59.17  Aligned_cols=94  Identities=10%  Similarity=0.094  Sum_probs=66.1

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc--CCCCChhcHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ--VDLASDLDLELVSDQLEGNAVQQKVMKSYTKK  100 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~  100 (133)
                      .++++++++....+++  ++|+...|+|++|+.+++..+++..+.+  ..++ +..++.|++.+.|    ||+.......
T Consensus       156 ~ii~i~~~~~~~~~~~--l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~-~~~l~~i~~~s~G----DiR~ai~~L~  228 (253)
T d1sxja2         156 PLILICNERNLPKMRP--FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD-PNVIDRLIQTTRG----DIRQVINLLS  228 (253)
T ss_dssp             CEEEEESCTTSSTTGG--GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC-TTHHHHHHHHTTT----CHHHHHHHHT
T ss_pred             cccccccccccccccc--ccceeeeeeccccchhHHHHHHHHHHHHhCCCCC-HHHHHHHHHhCCC----cHHHHHHHHH
Confidence            6777777777777774  6788899999999999999999998864  4444 4468999999876    7754322222


Q ss_pred             HHhcCCCCCCHHHHHHHHHhhhh
Q psy15623        101 TFCGKNSTPSQPKLLQAERPFRR  123 (133)
Q Consensus       101 ~~~~~~~~i~~~dl~~a~~~~~~  123 (133)
                      ........++.+++.+..+..++
T Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~k  251 (253)
T d1sxja2         229 TISTTTKTINHENINEISKAWEK  251 (253)
T ss_dssp             HHHHHSSCCCTTHHHHHHHHHHT
T ss_pred             HHHHcCCCCCHHHHHHHhchhcc
Confidence            33333456777777766555443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.19  E-value=7.3e-06  Score=58.01  Aligned_cols=98  Identities=12%  Similarity=0.003  Sum_probs=68.9

Q ss_pred             cEEEEEeeCCCCCC------CHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC---ChhcHHHHHHHcCCC-----C
Q psy15623         23 SIVILGASNFPWNI------DDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA---SDLDLELVSDQLEGN-----A   88 (133)
Q Consensus        23 ~v~vi~aTn~~~~l------D~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~---~~~~~~~la~~t~G~-----s   88 (133)
                      .+.+|+.+|.++..      ++++.+||..+++++.|+.++..+|++..++.....   ++.-++.+|+.+.++     .
T Consensus       173 ~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~~~~gd  252 (287)
T d1w5sa2         173 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS  252 (287)
T ss_dssp             BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred             ceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhccccCCCC
Confidence            67778777766544      367777999999999999999999999887542111   344578888887533     3


Q ss_pred             HHHHHHHHHHHH--HHhcCCCCCCHHHHHHHHHh
Q psy15623         89 VQQKVMKSYTKK--TFCGKNSTPSQPKLLQAERP  120 (133)
Q Consensus        89 gadi~~~~~~~~--~~~~~~~~i~~~dl~~a~~~  120 (133)
                      ++....++..+.  +...+...|+.+|+.+|+++
T Consensus       253 ~R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~e  286 (287)
T d1w5sa2         253 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE  286 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhc
Confidence            344333333333  33467789999999999764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=6.4e-06  Score=57.48  Aligned_cols=106  Identities=10%  Similarity=0.066  Sum_probs=75.7

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVS   81 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la   81 (133)
                      +.|+..|+....        .++++.+||.+..+++++++|+ ..+.|+.|+.++...++...+...++. ++..++.|+
T Consensus       117 ~~Ll~~le~~~~--------~~~~~~~~~~~~~i~~~i~sr~-~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~  187 (227)
T d1sxjc2         117 NALRRVIERYTK--------NTRFCVLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALI  187 (227)
T ss_dssp             HHHHHHHHHTTT--------TEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHH
T ss_pred             HHHHHHhhhccc--------ceeeccccCcHHHhHHHHHHHH-hhhccccccccccccccccccccccccCCHHHHHHHH
Confidence            456666665543        6789999999999999999997 568999999999999999988765554 466689999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHH
Q psy15623         82 DQLEGNAVQQKVMKSYTKKTFC--GKNSTPSQPKLLQAE  118 (133)
Q Consensus        82 ~~t~G~sgadi~~~~~~~~~~~--~~~~~i~~~dl~~a~  118 (133)
                      +.+.| +.+...+.........  .+...++.+++.+++
T Consensus       188 ~~s~G-d~R~ain~Lq~~~~~~~~~~~~~It~~~v~e~~  225 (227)
T d1sxjc2         188 ELSNG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYECC  225 (227)
T ss_dssp             HHHTT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHT
T ss_pred             HHcCC-cHHHHHHHHHHHHHhcCCCCCCeeCHHHHHHHh
Confidence            99987 3333322222211111  234678888888764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=6.3e-06  Score=58.09  Aligned_cols=63  Identities=17%  Similarity=0.182  Sum_probs=53.5

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc--CCCCChhcHHHHHHHcCC
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ--VDLASDLDLELVSDQLEG   86 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~~~~la~~t~G   86 (133)
                      ++.+|++||.++.+++++++|| ..|+|+.|+.++..++++..+++  .+...+.-++.|+..+.|
T Consensus       161 ~~~~Il~tn~~~~i~~~l~sR~-~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~G  225 (252)
T d1sxje2         161 NIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG  225 (252)
T ss_dssp             TEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT
T ss_pred             cccceeeeccccchhhhhhcch-heeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC
Confidence            6788999999999999999999 58999999999999999988865  333444457889998887

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.04  E-value=3.3e-05  Score=54.18  Aligned_cols=100  Identities=9%  Similarity=-0.017  Sum_probs=69.8

Q ss_pred             CcEEEEEeeCC---CCCCCHHHHhcc-ccEEEcCCCCHHHHHHHHHHHHhcCCC---CChhcHHHHHHHcCC-----C--
Q psy15623         22 KSIVILGASNF---PWNIDDAFLRRL-EKRIYVPLPSSSGRQELLRLILRQVDL---ASDLDLELVSDQLEG-----N--   87 (133)
Q Consensus        22 ~~v~vi~aTn~---~~~lD~al~rRf-d~~i~i~~P~~~~R~~il~~~~~~~~~---~~~~~~~~la~~t~G-----~--   87 (133)
                      .++.+|+++|.   .+.+++++.+|+ ...|+|++|+.+++.+|++..+.....   -++..++.+++.+.+     .  
T Consensus       157 ~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~  236 (276)
T d1fnna2         157 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR  236 (276)
T ss_dssp             CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTS
T ss_pred             cceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcC
Confidence            36888898887   456889998865 467999999999999999988754211   245557778887632     1  


Q ss_pred             -CHHHHHHHHHHH--HHHhcCCCCCCHHHHHHHHHhh
Q psy15623         88 -AVQQKVMKSYTK--KTFCGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        88 -sgadi~~~~~~~--~~~~~~~~~i~~~dl~~a~~~~  121 (133)
                       +++.+..++..+  .+...++..|+.+|+.+|.++.
T Consensus       237 G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~~~  273 (276)
T d1fnna2         237 GDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV  273 (276)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence             233333333333  3344677889999999998754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.03  E-value=7.7e-05  Score=51.78  Aligned_cols=94  Identities=15%  Similarity=0.152  Sum_probs=69.2

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHH--
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTK--   99 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~--   99 (133)
                      ...+|.+||.++.+.+++.+|| ..+.|++|+.++...+++..+.+..+. ++..++.||+.+.| +.+...+.+..+  
T Consensus       138 ~~~~i~~~~~~~~~~~~l~sr~-~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~g-d~R~ai~~L~~~~~  215 (237)
T d1sxjd2         138 VTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASK  215 (237)
T ss_dssp             TEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHH
T ss_pred             cccccccccccccccccccchh-hhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            5678889999999999999999 689999999999999999998765544 45568999999977 444433322211  


Q ss_pred             -HHHhcCCCCCCHHHHHHHH
Q psy15623        100 -KTFCGKNSTPSQPKLLQAE  118 (133)
Q Consensus       100 -~~~~~~~~~i~~~dl~~a~  118 (133)
                       .........++.+++.+.+
T Consensus       216 ~~~~~~~~~~It~~~i~e~~  235 (237)
T d1sxjd2         216 GAQYLGDGKNITSTQVEELA  235 (237)
T ss_dssp             HHHHHCSCCCCCHHHHHHHH
T ss_pred             hchhcCCCCccCHHHHHHhh
Confidence             1223445678988887653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.99  E-value=3.5e-06  Score=62.42  Aligned_cols=64  Identities=19%  Similarity=0.247  Sum_probs=49.1

Q ss_pred             HHHHHHHhhCCCCCCCCC--CCCcEEEEEe----eCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHH
Q psy15623          2 KSELLCHMDGIASTTNAD--PTKSIVILGA----SNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLI   65 (133)
Q Consensus         2 ~~~lL~~lD~~~~~~~~~--~~~~v~vi~a----Tn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~   65 (133)
                      +++||+.|||...+....  ...+|++|++    +|+|+.++|+++.||+.++.++.|+.+++.+|+..+
T Consensus       144 ~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~  213 (309)
T d1ofha_         144 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEP  213 (309)
T ss_dssp             HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSS
T ss_pred             HHHhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHH
Confidence            577999999864221000  0125667766    789999999999999999999999999999998643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=6e-05  Score=52.39  Aligned_cols=91  Identities=14%  Similarity=0.071  Sum_probs=65.3

Q ss_pred             cEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15623         23 SIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLA-SDLDLELVSDQLEGNAVQQKVMKSYTKKT  101 (133)
Q Consensus        23 ~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~G~sgadi~~~~~~~~~  101 (133)
                      ...++.+||..+.+.+++++|+. .++|+.|+.++...++...+++.++. ++..+..+++.+.| +.+...+...   .
T Consensus       131 ~~~~i~~~~~~~~i~~~l~sr~~-~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~G-d~R~ai~~Lq---~  205 (224)
T d1sxjb2         131 STRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQ---S  205 (224)
T ss_dssp             TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHH---H
T ss_pred             ceeeeeccCchhhhhhHHHHHHH-HhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCC-cHHHHHHHHH---H
Confidence            67888899999999999999995 69999999999999999988654443 45568889998876 3333322222   2


Q ss_pred             HhcCCCCCCHHHHHHHH
Q psy15623        102 FCGKNSTPSQPKLLQAE  118 (133)
Q Consensus       102 ~~~~~~~i~~~dl~~a~  118 (133)
                      ...+...++.+++.+.+
T Consensus       206 ~~~~~~~i~~~~i~~~~  222 (224)
T d1sxjb2         206 TVAGHGLVNADNVFKIV  222 (224)
T ss_dssp             HHHHHSSBCHHHHHHHH
T ss_pred             HHHcCCCcCHHHHHHHh
Confidence            22333467777766543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=0.00019  Score=49.79  Aligned_cols=72  Identities=17%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcCCCCChhcHHHHHH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQVDLASDLDLELVSD   82 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~   82 (133)
                      +.||..|+.-.        .++++|.+||.++.|.|++++|+ ..+.|++|+.++-..+++.   ...+ ++..+..+++
T Consensus       126 n~Llk~lEep~--------~~~~fIl~t~~~~~ll~tI~SRc-~~i~~~~~~~~~~~~~L~~---~~~~-~~~~~~~i~~  192 (207)
T d1a5ta2         126 NALLKTLEEPP--------AETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSR---EVTM-SQDALLAALR  192 (207)
T ss_dssp             HHHHHHHTSCC--------TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHH---HCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHhhc--------ccceeeeeecChhhhhhhhccee-EEEecCCCCHHHHHHHHHH---cCCC-CHHHHHHHHH
Confidence            45666676543        37899999999999999999998 7999999999888877754   3333 3556788888


Q ss_pred             HcCCC
Q psy15623         83 QLEGN   87 (133)
Q Consensus        83 ~t~G~   87 (133)
                      .+.|-
T Consensus       193 ~s~Gs  197 (207)
T d1a5ta2         193 LSAGS  197 (207)
T ss_dssp             HTTTC
T ss_pred             HcCCC
Confidence            88763

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.51  E-value=1e-05  Score=61.34  Aligned_cols=94  Identities=10%  Similarity=-0.118  Sum_probs=61.7

Q ss_pred             EEEeeCCCCCCCHHHHh--ccccEEEcCCCCHHHHH-HHHHHHHhcCCCCChhcHHHHHHHcCCCCHHHHHHHHHHHH--
Q psy15623         26 ILGASNFPWNIDDAFLR--RLEKRIYVPLPSSSGRQ-ELLRLILRQVDLASDLDLELVSDQLEGNAVQQKVMKSYTKK--  100 (133)
Q Consensus        26 vi~aTn~~~~lD~al~r--Rfd~~i~i~~P~~~~R~-~il~~~~~~~~~~~~~~~~~la~~t~G~sgadi~~~~~~~~--  100 (133)
                      +|+|||.   +|++++|  ||++.+++.+|+...|. +++..++++..+.  .+.+.++..+.|++|+|+...+..+.  
T Consensus       259 ~i~ttN~---~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~--~~~~~L~~li~~~s~~D~~~~i~~~~~~  333 (362)
T d1svma_         259 GIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQ--SGIALLLMLIWYRPVAEFAQSIQSRIVE  333 (362)
T ss_dssp             EEEEECS---CCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTT--CHHHHHHHHHHHSCGGGSCGGGHHHHHH
T ss_pred             ceeeccc---ccccccccccCceEEeecCCCcHHHHHHHHHHHhcccCCC--CCHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            7889995   4555556  99999999999877774 5666777766554  45677899999999999964322211  


Q ss_pred             HHhcCCCCCCHHHHHHHHHhhhhc
Q psy15623        101 TFCGKNSTPSQPKLLQAERPFRRS  124 (133)
Q Consensus       101 ~~~~~~~~i~~~dl~~a~~~~~~s  124 (133)
                      ........++...+.+..+.+...
T Consensus       334 ~~~~l~~ei~~~~~~~~k~~I~~G  357 (362)
T d1svma_         334 WKERLDKEFSLSVYQKMKFNVAMG  357 (362)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhccHHHHHHHHHHHHcC
Confidence            111112346666666665554433

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.70  E-value=0.024  Score=40.98  Aligned_cols=98  Identities=15%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             cEEEEEeeCC-CCCCCHHHHhccccEEEcCCC-CHHHHHHHHHHHH-------------------------------hcC
Q psy15623         23 SIVILGASNF-PWNIDDAFLRRLEKRIYVPLP-SSSGRQELLRLIL-------------------------------RQV   69 (133)
Q Consensus        23 ~v~vi~aTn~-~~~lD~al~rRfd~~i~i~~P-~~~~R~~il~~~~-------------------------------~~~   69 (133)
                      +.++++|+|. +..+.++++.||+..+.++.| +.+.|.++...-.                               .+.
T Consensus       170 ~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v  249 (333)
T d1g8pa_         170 RFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKV  249 (333)
T ss_dssp             CEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             CEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhcccce
Confidence            5788999897 566999999999999999877 5666666553221                               111


Q ss_pred             CCCCh--hcHHHHHHHcCCCCHHHHHHH--HHHHHHHhcCCCCCCHHHHHHHHHh
Q psy15623         70 DLASD--LDLELVSDQLEGNAVQQKVMK--SYTKKTFCGKNSTPSQPKLLQAERP  120 (133)
Q Consensus        70 ~~~~~--~~~~~la~~t~G~sgadi~~~--~~~~~~~~~~~~~i~~~dl~~a~~~  120 (133)
                      ....+  ..+...+......|.+-...+  .+.+.+...++..++.+|+.+++..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~S~R~~~~llrvArtiA~L~gr~~V~~~di~~a~~l  304 (333)
T d1g8pa_         250 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM  304 (333)
T ss_dssp             BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred             ecCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            11111  112233344455577666544  3434445578889999999998663

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.31  E-value=0.008  Score=41.45  Aligned_cols=81  Identities=12%  Similarity=0.249  Sum_probs=55.7

Q ss_pred             HHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCC---CHHHHhcccc--EEEcCCCCHHHHHHHHHHHHhcCCCC-ChhcHH
Q psy15623          5 LLCHMDGIASTTNADPTKSIVILGASNFPWNI---DDAFLRRLEK--RIYVPLPSSSGRQELLRLILRQVDLA-SDLDLE   78 (133)
Q Consensus         5 lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~l---D~al~rRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~   78 (133)
                      |...++.+...+      +-++++++..|..+   .+.+.+||..  .+.++ |+.+.|.++++..+...++. ++..++
T Consensus       119 lf~lin~~~~~~------~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~  191 (213)
T d1l8qa2         119 FFHIFNTLYLLE------KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVID  191 (213)
T ss_dssp             HHHHHHHHHHTT------CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHhhcc------ceEEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            444455544443      66777777778655   4778888765  55565 66789999999999665554 455688


Q ss_pred             HHHHHcCCCCHHHHHH
Q psy15623         79 LVSDQLEGNAVQQKVM   94 (133)
Q Consensus        79 ~la~~t~G~sgadi~~   94 (133)
                      .|++++.  +.+||..
T Consensus       192 yl~~~~~--~~R~L~~  205 (213)
T d1l8qa2         192 YLLENTK--NVREIEG  205 (213)
T ss_dssp             HHHHHCS--SHHHHHH
T ss_pred             HHHHhcC--cHHHHHH
Confidence            8999874  5788754

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.97  E-value=0.035  Score=37.65  Aligned_cols=44  Identities=16%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             HHHHHHhhCCCCCCCCCCCCcEEEEEeeCCCCCCCHHHHhccccEEEcCCCCH
Q psy15623          3 SELLCHMDGIASTTNADPTKSIVILGASNFPWNIDDAFLRRLEKRIYVPLPSS   55 (133)
Q Consensus         3 ~~lL~~lD~~~~~~~~~~~~~v~vi~aTn~~~~lD~al~rRfd~~i~i~~P~~   55 (133)
                      |.||..|+.-.        +++++|.+||.++.|.|.+++|+ ..+.++.|..
T Consensus        97 NaLLK~LEEPp--------~~t~fiLit~~~~~ll~TI~SRC-~~i~~~~p~~  140 (198)
T d2gnoa2          97 NAFLKALEEPP--------EYAVIVLNTRRWHYLLPTIKSRV-FRVVVNVPKE  140 (198)
T ss_dssp             HHTHHHHHSCC--------TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCHH
T ss_pred             hHHHHHHhCCC--------CCceeeeccCChhhCHHHHhcce-EEEeCCCchH
Confidence            45666666543        36788899999999999999998 5788887754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=2.2  Score=29.79  Aligned_cols=99  Identities=12%  Similarity=0.174  Sum_probs=62.0

Q ss_pred             CcEEEEEeeCC-----CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhc----CCCC-ChhcHHHHHHHc------C
Q psy15623         22 KSIVILGASNF-----PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQ----VDLA-SDLDLELVSDQL------E   85 (133)
Q Consensus        22 ~~v~vi~aTn~-----~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~-~~~~~~~la~~t------~   85 (133)
                      +.+-+||+|..     .-.-|+|+.|||.. |.+..|+.++-..|++.....    ..+. .+.-+..+++.+      .
T Consensus       146 g~i~vIgatT~eey~~~~e~d~al~rrF~~-I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~  224 (268)
T d1r6bx2         146 GKIRVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR  224 (268)
T ss_dssp             CCCEEEEEECHHHHHCCCCCTTSSGGGEEE-EECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTS
T ss_pred             CCCeEEEeCCHHHHHHHHhhcHHHHhhhcc-cccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCC
Confidence            37888888874     33569999999985 899999999999999875532    2222 233344444444      3


Q ss_pred             CCCHHHHHHH---HHHHHHH--hcCCCCCCHHHHHHHHHhh
Q psy15623         86 GNAVQQKVMK---SYTKKTF--CGKNSTPSQPKLLQAERPF  121 (133)
Q Consensus        86 G~sgadi~~~---~~~~~~~--~~~~~~i~~~dl~~a~~~~  121 (133)
                      .|.+.-|..+   ++.++..  ......+..+|+...+.++
T Consensus       225 ~~PdKAIdllDea~a~~~~~~~~~~~~~i~~~di~~~i~~~  265 (268)
T d1r6bx2         225 HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI  265 (268)
T ss_dssp             CTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhhccccCcccCCHHHHHHHHHHH
Confidence            4555555432   2222222  1334568888887766543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.25  E-value=0.4  Score=34.45  Aligned_cols=72  Identities=13%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             CcEEEEEeeCC--------------------------CCCCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC------
Q psy15623         22 KSIVILGASNF--------------------------PWNIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV------   69 (133)
Q Consensus        22 ~~v~vi~aTn~--------------------------~~~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~------   69 (133)
                      .+.++|+|||.                          .+.+.|.++.|||..+.|.+.+.++-.+|+...+...      
T Consensus       165 ~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~  244 (315)
T d1qvra3         165 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE  244 (315)
T ss_dssp             TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHh
Confidence            47899999996                          3569999999999999999999999999987666432      


Q ss_pred             -CCC---ChhcHHHHHHH--cCCCCHHHHH
Q psy15623         70 -DLA---SDLDLELVSDQ--LEGNAVQQKV   93 (133)
Q Consensus        70 -~~~---~~~~~~~la~~--t~G~sgadi~   93 (133)
                       ...   ++..++.|+++  ...+-++.|+
T Consensus       245 ~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~  274 (315)
T d1qvra3         245 KRISLELTEAAKDFLAERGYDPVFGARPLR  274 (315)
T ss_dssp             TTCEEEECHHHHHHHHHHHCBTTTBTSTHH
T ss_pred             ccccccccHHHHHHHHHhCCCCCCCcchHH
Confidence             111   33446677776  3556667775

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.01  E-value=2  Score=30.47  Aligned_cols=72  Identities=11%  Similarity=0.174  Sum_probs=50.9

Q ss_pred             CcEEEEEeeCCCC-------------------------CCCHHHHhccccEEEcCCCCHHHHHHHHHHHHhcC-------
Q psy15623         22 KSIVILGASNFPW-------------------------NIDDAFLRRLEKRIYVPLPSSSGRQELLRLILRQV-------   69 (133)
Q Consensus        22 ~~v~vi~aTn~~~-------------------------~lD~al~rRfd~~i~i~~P~~~~R~~il~~~~~~~-------   69 (133)
                      .+.++|+|||-..                         .+.|.++.|+|..+.|.+.+.++-..|+...+...       
T Consensus       161 ~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~  240 (315)
T d1r6bx3         161 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQK  240 (315)
T ss_dssp             TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhc
Confidence            3788999999532                         36888888999999999999999999988777432       


Q ss_pred             CCC---ChhcHHHHHHHc--CCCCHHHHH
Q psy15623         70 DLA---SDLDLELVSDQL--EGNAVQQKV   93 (133)
Q Consensus        70 ~~~---~~~~~~~la~~t--~G~sgadi~   93 (133)
                      ...   .+.-+..|++..  ..+.++.|+
T Consensus       241 ~i~l~~~~~a~~~l~~~~yd~~~GaR~L~  269 (315)
T d1r6bx3         241 GVSLEVSQEARNWLAEKGYDRAMGARPMA  269 (315)
T ss_dssp             TEEEEECHHHHHHHHHHHCBTTTBTTTHH
T ss_pred             CcchhhHHHHHHHHHHhCCCCCCChhhHH
Confidence            111   333456666643  456666775