Psyllid ID: psy15625

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEcccccHHHHHHHHcccccccccccccEEEEEEEEEEEccEEEEEEEEcccccccccHHccccccccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgtredeyDYLFKVVLIGdsgvgksnllsrftrnefnleskstigvefATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLvgppsllrrYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNksdlrhlravpadeaktfaernnlsfIETSALDSTNVETAFQNILTAN
Flexible Loop (DISEMBL)
mgtredeyDYLFKVVLIGDSGVGKSNLLsrftrnefnleskstigvefatrsiqvdqktIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSfietsaldstnvETAFQNILTAN
Low Complexity Region (SEG)
MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN
Disordered region (IsUnstruct)
*******YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIET*******************
Disordered Region (DISOPRED)
*****DE*DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA*
Disordered Region (DISEMBL)
MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN
Disordered Region (DISPRO)
*****DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
P22129	218	Ras-related protein Rab-1	N/A	N/A	0.762	0.779	0.710	2e-80
P46638	218	Ras-related protein Rab-1	yes	N/A	0.762	0.779	0.710	3e-80
O35509	218	Ras-related protein Rab-1	yes	N/A	0.762	0.779	0.710	3e-80
Q15907	218	Ras-related protein Rab-1	yes	N/A	0.762	0.779	0.710	3e-80
Q3MHP2	218	Ras-related protein Rab-1	yes	N/A	0.762	0.779	0.710	3e-80
P62494	216	Ras-related protein Rab-1	no	N/A	0.762	0.787	0.705	1e-79
P62493	216	Ras-related protein Rab-1	yes	N/A	0.762	0.787	0.705	1e-79
Q5R9M7	216	Ras-related protein Rab-1	no	N/A	0.762	0.787	0.705	1e-79
Q52NJ1	216	Ras-related protein Rab-1	no	N/A	0.762	0.787	0.705	1e-79
P62492	216	Ras-related protein Rab-1	no	N/A	0.762	0.787	0.705	1e-79

>sp|P22129|RB11B_DIPOM Ras-related protein Rab-11B OS=Diplobatis ommata PE=2 SV=1

 Score =  298 bits (763), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/221 (71%), Positives = 162/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 130 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 170

GTPase that modulates endosomal trafficking. Acts as a major regulator of membrane delivery during cytokinesis.
Discopyge ommata (taxid: 7785)

>sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3

 Score =  298 bits (762), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/221 (71%), Positives = 162/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 130 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 170

GTPase that modulates endosomal trafficking. Acts as a major regulator of membrane delivery during cytokinesis.

Mus musculus (taxid: 10090)

>sp|O35509|RB11B_RAT Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4

 Score =  298 bits (762), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/221 (71%), Positives = 162/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 130 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 170

GTPase that modulates endosomal trafficking. Acts as a major regulator of membrane delivery during cytokinesis.

Rattus norvegicus (taxid: 10116)

>sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4

 Score =  298 bits (762), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/221 (71%), Positives = 162/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 130 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 170

GTPase that modulates endosomal trafficking. Acts as a major regulator of membrane delivery during cytokinesis.

Homo sapiens (taxid: 9606)

>sp|Q3MHP2|RB11B_BOVIN Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3

 Score =  298 bits (762), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/221 (71%), Positives = 162/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 130 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 170

GTPase that modulates endosomal trafficking. Acts as a major regulator of membrane delivery during cytokinesis.

Bos taurus (taxid: 9913)

>sp|P62494|RB11A_RAT Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 160/221 (72%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170

Regulates endocytic recycling. May exert its functions by interacting with multiple effector proteins in different complexes. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial cell polarization. Together with RAB3IP, RAB8A, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B participates in CFTR trafficking to the plasma membrane and TF (Transferrin) recycling in nonpolarized cells. Required in a complex with MYO5B and RAB11FIP2 for the transport of NPC1L1 to the plasma membrane. Participates in the sorting and basolateral transport of CDH1 from the Golgi apparatus to the plasma membrane. Regulates the recycling of FCGRT (receptor of Fc region of monomeric Ig G) to basolateral membranes.

Rattus norvegicus (taxid: 10116)

>sp|P62493|RB11A_RABIT Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 160/221 (72%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170

Regulates endocytic recycling. May exert its functions by interacting with multiple effector proteins in different complexes. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial cell polarization. Together with RAB3IP, RAB8A, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B participates in CFTR trafficking to the plasma membrane and TF (Transferrin) recycling in nonpolarized cells. Required in a complex with MYO5B and RAB11FIP2 for the transport of NPC1L1 to the plasma membrane. Participates in the sorting and basolateral transport of CDH1 from the Golgi apparatus to the plasma membrane. Regulates the recycling of FCGRT (receptor of Fc region of monomeric Ig G) to basolateral membranes.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5R9M7|RB11A_PONAB Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 160/221 (72%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170

Regulates endocytic recycling. May exert its functions by interacting with multiple effector proteins in different complexes. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial cell polarization. Together with RAB3IP, RAB8A, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B participates in CFTR trafficking to the plasma membrane and TF (Transferrin) recycling in nonpolarized cells. Required in a complex with MYO5B and RAB11FIP2 for the transport of NPC1L1 to the plasma membrane. Participates in the sorting and basolateral transport of CDH1 from the Golgi apparatus to the plasma membrane. Regulates the recycling of FCGRT (receptor of Fc region of monomeric Ig G) to basolateral membranes.

Pongo abelii (taxid: 9601)

>sp|Q52NJ1|RB11A_PIG Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 160/221 (72%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170

Regulates endocytic recycling. May exert its functions by interacting with multiple effector proteins in different complexes. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial cell polarization. Together with RAB3IP, RAB8A, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B participates in CFTR trafficking to the plasma membrane and TF (Transferrin) recycling in nonpolarized cells. Required in a complex with MYO5B and RAB11FIP2 for the transport of NPC1L1 to the plasma membrane. Participates in the sorting and basolateral transport of CDH1 from the Golgi apparatus to the plasma membrane. Regulates the recycling of FCGRT (receptor of Fc region of monomeric Ig G) to basolateral membranes.

Sus scrofa (taxid: 9823)

>sp|P62492|RB11A_MOUSE Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 160/221 (72%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170

Regulates endocytic recycling. May exert its functions by interacting with multiple effector proteins in different complexes. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial cell polarization. Together with RAB3IP, RAB8A, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B participates in CFTR trafficking to the plasma membrane and TF (Transferrin) recycling in nonpolarized cells. Required in a complex with MYO5B and RAB11FIP2 for the transport of NPC1L1 to the plasma membrane. Participates in the sorting and basolateral transport of CDH1 from the Golgi apparatus to the plasma membrane. Regulates the recycling of FCGRT (receptor of Fc region of monomeric Ig G) to basolateral membranes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
338727253	329	PREDICTED: ras-related protein Rab-11B-l	0.766	0.519	0.720	7e-82
156551916	215	PREDICTED: ras-related protein Rab-11A-l	0.762	0.790	0.733	5e-81
307210968	215	Ras-related protein Rab-11B [Harpegnatho	0.762	0.790	0.733	9e-81
383854058	238	PREDICTED: ras-related protein Rab-11A-l	0.762	0.714	0.733	9e-81
340729738	215	PREDICTED: ras-related protein Rab-11A-l	0.762	0.790	0.733	1e-80
328778735	249	PREDICTED: ras-related protein Rab-11A [	0.762	0.682	0.728	1e-80
307185019	215	Ras-related protein Rab-11A [Camponotus	0.762	0.790	0.733	1e-80
380017257	215	PREDICTED: ras-related protein Rab-11A-l	0.762	0.790	0.728	2e-80
443733114	214	hypothetical protein CAPTEDRAFT_226009 [	0.762	0.794	0.719	3e-80
170035713	215	conserved hypothetical protein [Culex qu	0.762	0.790	0.728	6e-80

>gi|338727253|ref|XP_001917048.2| PREDICTED: ras-related protein Rab-11B-like [Equus caballus]

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 160/222 (72%), Positives = 165/222 (74%), Gaps = 51/222 (22%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 129 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 188

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 189 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 248

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG                                                   NKSDLR
Sbjct: 249 LVG---------------------------------------------------NKSDLR 257

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           HLRAVP DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT 
Sbjct: 258 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTG 299

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156551916|ref|XP_001607057.1| PREDICTED: ras-related protein Rab-11A-like [Nasonia vitripennis]

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 164/221 (74%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEAKTFAE+N LSFIETSALDSTNVETAFQNILT
Sbjct: 130 HLRAVPTDEAKTFAEKNGLSFIETSALDSTNVETAFQNILT 170

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210968|gb|EFN87269.1| Ras-related protein Rab-11B [Harpegnathos saltator]

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 163/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEAK FAERN LSFIETSALDSTNVETAFQNILT
Sbjct: 130 HLRAVPTDEAKAFAERNGLSFIETSALDSTNVETAFQNILT 170

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854058|ref|XP_003702539.1| PREDICTED: ras-related protein Rab-11A-like [Megachile rotundata]

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 163/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 24  MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 83

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM
Sbjct: 84  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 143

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 144 LVGNKSDLR--------------------------------------------------- 152

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEAK FAERN LSFIETSALDSTNVETAFQNILT
Sbjct: 153 HLRAVPTDEAKAFAERNGLSFIETSALDSTNVETAFQNILT 193

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729738|ref|XP_003403153.1| PREDICTED: ras-related protein Rab-11A-like [Bombus terrestris] gi|350411417|ref|XP_003489343.1| PREDICTED: ras-related protein Rab-11A-like [Bombus impatiens]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 163/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEAK FAERN LSFIETSALDSTNVETAFQNILT
Sbjct: 130 HLRAVPTDEAKAFAERNGLSFIETSALDSTNVETAFQNILT 170

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778735|ref|XP_623997.2| PREDICTED: ras-related protein Rab-11A [Apis mellifera]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 163/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 35  MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 94

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM
Sbjct: 95  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 154

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 155 LVGNKSDLR--------------------------------------------------- 163

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEAK FAE+N LSFIETSALDSTNVETAFQNILT
Sbjct: 164 HLRAVPTDEAKAFAEKNGLSFIETSALDSTNVETAFQNILT 204

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185019|gb|EFN71248.1| Ras-related protein Rab-11A [Camponotus floridanus]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 163/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEAK FAERN LSFIETSALDSTNVETAFQNILT
Sbjct: 130 HLRAVPTDEAKAFAERNGLSFIETSALDSTNVETAFQNILT 170

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017257|ref|XP_003692576.1| PREDICTED: ras-related protein Rab-11A-like [Apis florea]

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 163/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEAK FAE+N LSFIETSALDSTNVETAFQNILT
Sbjct: 130 HLRAVPTDEAKAFAEKNGLSFIETSALDSTNVETAFQNILT 170

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443733114|gb|ELU17603.1| hypothetical protein CAPTEDRAFT_226009 [Capitella teleta]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 159/221 (71%), Positives = 163/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGT++DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEAK FAE+NNLSFIETSALDSTNVETAFQNILT
Sbjct: 130 HLRAVPTDEAKAFAEKNNLSFIETSALDSTNVETAFQNILT 170

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|170035713|ref|XP_001845712.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167878018|gb|EDS41401.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 163/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI+VD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTI 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM
Sbjct: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEAK FAERN LSFIETSALDSTNVETAFQNILT
Sbjct: 130 HLRAVPTDEAKGFAERNGLSFIETSALDSTNVETAFQNILT 170

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
FB|FBgn0015790	214	Rab11 "Rab11" [Drosophila mela	0.578	0.602	0.953	2.4e-60
UNIPROTKB|Q5F3R8	218	RAB11B "Uncharacterized protei	0.578	0.591	0.945	5e-60
UNIPROTKB|Q3MHP2	218	RAB11B "Ras-related protein Ra	0.578	0.591	0.945	5e-60
UNIPROTKB|J9JHN1	218	RAB11B "Uncharacterized protei	0.578	0.591	0.945	5e-60
UNIPROTKB|B4DMK0	179	RAB11B "cDNA FLJ61134, highly	0.578	0.720	0.945	5e-60
UNIPROTKB|Q15907	218	RAB11B "Ras-related protein Ra	0.578	0.591	0.945	5e-60
UNIPROTKB|F2Z5J9	218	RAB11B "Uncharacterized protei	0.578	0.591	0.945	5e-60
MGI|MGI:99425	218	Rab11b "RAB11B, member RAS onc	0.578	0.591	0.945	5e-60
RGD|68369	218	Rab11b "RAB11B, member RAS onc	0.578	0.591	0.945	5e-60
UNIPROTKB|F2Z4D5	216	RAB11A "Ras-related protein Ra	0.578	0.597	0.945	5e-60

FB|FBgn0015790 Rab11 "Rab11" [Drosophila melanogaster (taxid:7227)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 123/129 (95%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MG REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI+VD KTI
Sbjct:     1 MGAREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0006897 "endocytosis" evidence=IDA;IMP

GO:0007349 "cellularization" evidence=IMP

GO:0031532 "actin cytoskeleton reorganization" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0042052 "rhabdomere development" evidence=IMP

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0016360 "sensory organ precursor cell fate determination" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0043195 "terminal bouton" evidence=IDA

GO:0022416 "chaeta development" evidence=IMP

GO:0050807 "regulation of synapse organization" evidence=IMP

GO:0048749 "compound eye development" evidence=IGI

GO:0048599 "oocyte development" evidence=IMP

GO:0030723 "ovarian fusome organization" evidence=IMP

GO:0034334 "adherens junction maintenance" evidence=IMP

GO:0045169 "fusome" evidence=IDA

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0060187 "cell pole" evidence=IDA

GO:0070732 "spindle envelope" evidence=IDA

GO:0048210 "Golgi vesicle fusion to target membrane" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007112 "male meiosis cytokinesis" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0048137 "spermatocyte division" evidence=IMP

GO:0032154 "cleavage furrow" evidence=IDA

GO:0000916 "actomyosin contractile ring contraction" evidence=IMP

GO:0007391 "dorsal closure" evidence=IMP

GO:0042078 "germ-line stem cell division" evidence=IMP

GO:0045478 "fusome organization" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0046664 "dorsal closure, amnioserosa morphology change" evidence=IMP

GO:0007394 "dorsal closure, elongation of leading edge cells" evidence=IMP

GO:2000039 "regulation of trichome morphogenesis" evidence=IGI;IMP

GO:0055037 "recycling endosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

UNIPROTKB|Q5F3R8 RAB11B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/129 (94%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct:     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

UNIPROTKB|Q3MHP2 RAB11B "Ras-related protein Rab-11B" [Bos taurus (taxid:9913)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/129 (94%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct:     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0032402 "melanosome transport" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9JHN1 RAB11B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/129 (94%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct:     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|B4DMK0 RAB11B "cDNA FLJ61134, highly similar to Ras-related protein Rab-11B" [Homo sapiens (taxid:9606)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/129 (94%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct:     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q15907 RAB11B "Ras-related protein Rab-11B" [Homo sapiens (taxid:9606)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/129 (94%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct:     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0032402 "melanosome transport" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|F2Z5J9 RAB11B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/129 (94%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct:     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0019003 "GDP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:99425 Rab11b "RAB11B, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/129 (94%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct:     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

GO:0019003 "GDP binding" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO

RGD|68369 Rab11b "RAB11B, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/129 (94%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct:     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0003924 "GTPase activity" evidence=ISO;ISS

GO:0005525 "GTP binding" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006928 "cellular component movement" evidence=NAS

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0019003 "GDP binding" evidence=ISO;ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0032402 "melanosome transport" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=ISO;ISS

GO:0055037 "recycling endosome" evidence=ISS

UNIPROTKB|F2Z4D5 RAB11A "Ras-related protein Rab-11A" [Bos taurus (taxid:9913)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 122/129 (94%), Positives = 124/129 (96%)

Query:     1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct:     1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60

Query:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct:    61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120

Query:   121 LVGPPSLLR 129
             LVG  S LR
Sbjct:   121 LVGNKSDLR 129

GO:0072659 "protein localization to plasma membrane" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15907	RB11B_HUMAN	No assigned EC number	0.7104	0.7623	0.7798	yes	N/A
Q5R9M7	RB11A_PONAB	No assigned EC number	0.7058	0.7623	0.7870	no	N/A
P17610	YPT3_SCHPO	No assigned EC number	0.6027	0.7533	0.7850	yes	N/A
P40393	RIC2_ORYSJ	No assigned EC number	0.6175	0.7443	0.7649	yes	N/A
Q2TA29	RB11A_BOVIN	No assigned EC number	0.7013	0.7623	0.7870	no	N/A
P36412	RB11A_DICDI	No assigned EC number	0.6036	0.7443	0.7757	yes	N/A
O35509	RB11B_RAT	No assigned EC number	0.7104	0.7623	0.7798	yes	N/A
P46638	RB11B_MOUSE	No assigned EC number	0.7104	0.7623	0.7798	yes	N/A
Q5ZJN2	RB11A_CHICK	No assigned EC number	0.7013	0.7623	0.7870	no	N/A
P22129	RB11B_DIPOM	No assigned EC number	0.7104	0.7623	0.7798	N/A	N/A
Q3MHP2	RB11B_BOVIN	No assigned EC number	0.7104	0.7623	0.7798	yes	N/A
P38555	YPT31_YEAST	No assigned EC number	0.5467	0.7309	0.7309	yes	N/A
P62494	RB11A_RAT	No assigned EC number	0.7058	0.7623	0.7870	no	N/A
Q52NJ1	RB11A_PIG	No assigned EC number	0.7058	0.7623	0.7870	no	N/A
P62491	RB11A_HUMAN	No assigned EC number	0.7058	0.7623	0.7870	no	N/A
P62490	RB11A_CANFA	No assigned EC number	0.7058	0.7623	0.7870	no	N/A
P62493	RB11A_RABIT	No assigned EC number	0.7058	0.7623	0.7870	yes	N/A
P62492	RB11A_MOUSE	No assigned EC number	0.7058	0.7623	0.7870	no	N/A
O49513	RAA1E_ARATH	No assigned EC number	0.5990	0.7443	0.7649	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	223
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-120
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-95
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	6e-93
pfam00071	162	pfam00071, Ras, Ras family	1e-78
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-78
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	5e-64
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-62
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	8e-62
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-61
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	8e-57
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-55
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	9e-55
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-54
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-52
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	3e-50
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-49
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-47
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-45
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-44
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	8e-44
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-40
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-38
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	5e-38
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-37
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-37
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	8e-37
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-35
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-35
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	6e-35
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-33
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-33
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	7e-33
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	5e-32
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	5e-32
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-30
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-28
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-27
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-27
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-26
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-24
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-24
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-24
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	4e-24
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-23
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	8e-23
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-22
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-22
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	6e-22
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	7e-22
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-21
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-21
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-21
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	6e-20
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-19
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-19
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-19
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-19
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	7e-19
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	1e-18
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-17
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	2e-17
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-17
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-17
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	9e-17
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	9e-16
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-15
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-15
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-15
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	8e-15
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-14
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-14
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-14
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-14
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-13
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-12
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-12
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	4e-12
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-11
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-09
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-09
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-09
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-09
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	6e-09
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-08
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-08
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	4e-08
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	5e-08
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	7e-07
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-06
pfam13401	124	pfam13401, AAA_22, AAA domain	6e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	4e-05
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	5e-05
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-04
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	1e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-04
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	3e-04
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	0.001
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	0.001
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	0.002
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	0.003
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	0.004

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  338 bits (870), Expect = e-120
 Identities = 141/213 (66%), Positives = 151/213 (70%), Gaps = 51/213 (23%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           DYLFK+VLIGDSGVGKSNLLSRFTRNEFNL+SKSTIGVEFATR+IQ+D KTIKAQIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQERYRAITSA                                                 
Sbjct: 61  GQERYRAITSA------------------------------------------------- 71

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
             YYRGAVGALLVYDI K  T+ENVERWL+ELRDHAD NIVIMLVGNKSDLRHLRAVP +
Sbjct: 72  --YYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTE 129

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           EAK FAE+N LSFIETSALD TNVE AF+ +LT
Sbjct: 130 EAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT 162

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  276 bits (708), Expect = 3e-95
 Identities = 131/222 (59%), Positives = 149/222 (67%), Gaps = 52/222 (23%)

Query: 1   MGTRED-EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT 59
           M  R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR++QV+ KT
Sbjct: 1   MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 60  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI 119
           +KAQIWDTAGQERYRAITSAYYRGAVGALLVYDI K  T                     
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT--------------------- 99

Query: 120 MLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL 179
                                         ++NV+RWLRELRDHAD NIVIM+ GNKSDL
Sbjct: 100 ------------------------------FDNVQRWLRELRDHADSNIVIMMAGNKSDL 129

Query: 180 RHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
            HLR+V  ++ +  AE+  LSF+ETSAL++TNVE AFQ IL 
Sbjct: 130 NHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILL 171

Length = 216

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  268 bits (689), Expect = 6e-93
 Identities = 100/210 (47%), Positives = 127/210 (60%), Gaps = 51/210 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK++LIGDSGVGKS+LLSRFT  +F+ + KSTIGV+F T++I+VD K +K QIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R+ITS+YYRGAVGALLVYDI    +                                 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRES--------------------------------- 87

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                             +EN+E WL+ELR++A  N+VIMLVGNKSDL   R V  +EA+
Sbjct: 88  ------------------FENLENWLKELREYASPNVVIMLVGNKSDLEEQRQVSREEAE 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILT 221
            FAE + L F ETSA  +TNVE AF+ +  
Sbjct: 130 AFAEEHGLPFFETSAKTNTNVEEAFEELAR 159

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  232 bits (595), Expect = 1e-78
 Identities = 87/210 (41%), Positives = 114/210 (54%), Gaps = 51/210 (24%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+VL+GD GVGKS+LL RFT+N+F  E   TIGV+F T++I+VD KT+K QIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           +RA+   YYRGA G LLVYDI    +                                  
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDS---------------------------------- 86

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                            +ENV++WL E+  HAD+N+ I+LVGNK DL   R V  +E + 
Sbjct: 87  -----------------FENVKKWLEEILRHADENVPIVLVGNKCDLEDQRVVSTEEGEA 129

Query: 193 FAERNNLSFIETSALDSTNVETAFQNILTA 222
            A+   L F+ETSA  + NVE AF+ +   
Sbjct: 130 LAKELGLPFMETSAKTNENVEEAFEELARE 159

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  231 bits (593), Expect = 2e-78
 Identities = 91/208 (43%), Positives = 123/208 (59%), Gaps = 51/208 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VLIGDSGVGK++LL RF  N+F+   KSTIGV+F +++I+VD K +K QIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R+ITS+YYRGA GA+LVYD    +T                                 
Sbjct: 61  RFRSITSSYYRGAHGAILVYD----VTNRE------------------------------ 86

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                            ++EN+++WL EL+++A  NI I+LVGNKSDL   R V  +EA+
Sbjct: 87  -----------------SFENLDKWLNELKEYAPPNIPIILVGNKSDLEDERQVSTEEAQ 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            FA+ N L F ETSA    NV+ AF+++
Sbjct: 130 QFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  195 bits (499), Expect = 5e-64
 Identities = 79/208 (37%), Positives = 108/208 (51%), Gaps = 51/208 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GDS VGKS+++ RF +NEF+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RYR++   YYRGA  A++VYDI                                S  +  
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITS----------------------------EESFEK-- 91

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                        AK         W++EL++H   NIVI L GNK+DL   R V  +EA+
Sbjct: 92  -------------AKS--------WVKELQEHGPPNIVIALAGNKADLESKRQVSTEEAQ 130

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +A+ N L F+ETSA    NV   F  I
Sbjct: 131 EYADENGLLFMETSAKTGENVNELFTEI 158

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  191 bits (487), Expect = 3e-62
 Identities = 87/212 (41%), Positives = 109/212 (51%), Gaps = 51/212 (24%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQE +R+IT                                                  
Sbjct: 61  AGQESFRSIT-------------------------------------------------- 70

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
            R YYRGA GALLVYDI +  T+ ++  WL + R H++ N+ IML+GNK DL   R V  
Sbjct: 71  -RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSY 129

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
           +E + FA  + L F+ETSA  ++NVE AF N 
Sbjct: 130 EEGEAFAREHGLIFMETSAKTASNVEEAFINT 161

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  190 bits (484), Expect = 8e-62
 Identities = 87/208 (41%), Positives = 115/208 (55%), Gaps = 51/208 (24%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           DYLFK++LIGDSGVGKS LL RF+ + FN    STIG++F  R+I++D K IK QIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R IT++YYRGA+G +LVYDI    ++EN++ W+R + +HA               
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS-------------- 106

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                 E+VER               MLVGNK D+   R V  +
Sbjct: 107 ----------------------EDVER---------------MLVGNKCDMEEKRVVSKE 129

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
           E +  A    + F+ETSA  + NVE AF
Sbjct: 130 EGEALAREYGIKFLETSAKANINVEEAF 157

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  188 bits (480), Expect = 3e-61
 Identities = 85/210 (40%), Positives = 117/210 (55%), Gaps = 51/210 (24%)

Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           YLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KT+K QIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E                     
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQE--------------------- 99

Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                  ++R+       A +N+  +LVGNK DL   + V   E
Sbjct: 100 -----------------------IDRY-------ASENVNKLLVGNKCDLTDKKVVDYTE 129

Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNI 219
           AK FA+   + F+ETSA ++TNVE AF  +
Sbjct: 130 AKEFADELGIPFLETSAKNATNVEEAFMTM 159

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  177 bits (450), Expect = 8e-57
 Identities = 86/207 (41%), Positives = 109/207 (52%), Gaps = 51/207 (24%)

Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V+ + IK QIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QER+RA+T                                                   R
Sbjct: 61  QERFRAVT---------------------------------------------------R 69

Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
            YYRGA GAL+VYDI +  TY ++  WL + R+  + N VI L+GNK+DL   R V  +E
Sbjct: 70  SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEE 129

Query: 190 AKTFAERNNLSFIETSALDSTNVETAF 216
           AK FA+ N L F+E SA    NVE AF
Sbjct: 130 AKQFADENGLLFLECSAKTGENVEDAF 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  174 bits (442), Expect = 2e-55
 Identities = 78/210 (37%), Positives = 113/210 (53%), Gaps = 51/210 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K++LIGDSGVGKS+LL RFT + F+ +  STIGV+F  +++ VD K +K  IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R +TS+YYRGA G +LVYD+ +  T++N++ WL EL  ++                  
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYST----------------- 103

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                            + + V MLVGNK D +  R V  +E +
Sbjct: 104 ---------------------------------NPDAVKMLVGNKID-KENREVTREEGQ 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILT 221
            FA ++N+ FIETSA     V+ AF+ ++ 
Sbjct: 130 KFARKHNMLFIETSAKTRIGVQQAFEELVE 159

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  173 bits (441), Expect = 9e-55
 Identities = 88/211 (41%), Positives = 109/211 (51%), Gaps = 51/211 (24%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQE +R+IT                                                  
Sbjct: 63  AGQESFRSIT-------------------------------------------------- 72

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
            R YYRGA GALLVYDI +  T+ ++  WL + R HA+ N+ IML+GNK DL H RAV  
Sbjct: 73  -RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVST 131

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQN 218
           +E + FA+ + L F+E SA  + NVE AF  
Sbjct: 132 EEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162

Length = 210

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  170 bits (432), Expect = 4e-54
 Identities = 83/205 (40%), Positives = 104/205 (50%), Gaps = 51/205 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V  K++K QIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++T                                                   R Y
Sbjct: 61  RFRSVT---------------------------------------------------RSY 69

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
           YRGA GALLVYDI    ++  +  WL + R  A  +IVI+LVGNK DL   R V   EA 
Sbjct: 70  YRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDDREVTFLEAS 129

Query: 192 TFAERNNLSFIETSALDSTNVETAF 216
            FA+ N L F+ETSAL   NVE AF
Sbjct: 130 RFAQENGLLFLETSALTGENVEEAF 154

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  166 bits (423), Expect = 1e-52
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 52/209 (24%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           D+LFK++LIGDS VGK+ ++ RF    F+    +TIGV+F  +++++  K +K QIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R IT +YYR A GA++ YDI +  ++E+V  W+ E+  +   N            
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN------------ 108

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                  +V++L+GNK DL   R V  +
Sbjct: 109 ---------------------------------------VVLLLIGNKCDLEEQREVLFE 129

Query: 189 EAKTFAERNN-LSFIETSALDSTNVETAF 216
           EA T AE    L+ +ETSA +S+NVE AF
Sbjct: 130 EACTLAEHYGILAVLETSAKESSNVEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  162 bits (411), Expect = 3e-50
 Identities = 77/208 (37%), Positives = 104/208 (50%), Gaps = 51/208 (24%)

Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTA 68
           Y F++++IGDS VGKS+LL RFT   F   S  T+GV+F +R I++     IK Q+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R+IT +YYR +VG LLV+DI    ++E+V  WL E R H         + P    
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSH---------IQPHR-- 109

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                   V +LVG+K DL   R V  +
Sbjct: 110 ---------------------------------------PVFILVGHKCDLESQRQVTRE 130

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
           EA+  A+   + +IETSA    NVE AF
Sbjct: 131 EAEKLAKDLGMKYIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  158 bits (403), Expect = 1e-49
 Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 51/211 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K+V +GD  VGK+++++RF  + F+ + ++TIG++F ++++ VD KT++ Q+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R                                                   SL+  Y
Sbjct: 61  RFR---------------------------------------------------SLIPSY 69

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
            R +  A++VYDI    +++N ++W+ ++RD    +++I+LVGNK+DL   R V  +E +
Sbjct: 70  IRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGE 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A+ NN  FIETSA    NV+  F+ I  A
Sbjct: 130 KKAKENNAMFIETSAKAGHNVKQLFKKIAQA 160

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  153 bits (388), Expect = 2e-47
 Identities = 63/211 (29%), Positives = 89/211 (42%), Gaps = 51/211 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNE-FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
            K+V++GD  VGKS LL+R   N+    E K      + T  I+ D KT K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           E Y AI   YYR    +L V+DI                                     
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIV------------------------------------ 85

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                   +LV D       E +E+  +E+  HA+  + I+LVGNK DLR  + +    A
Sbjct: 86  --------ILVLD-----VEEILEKQTKEIIHHAESGVPIILVGNKIDLRDAK-LKTHVA 131

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNILT 221
             FA+ N    I  SA    N+++AF+ +  
Sbjct: 132 FLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  147 bits (373), Expect = 4e-45
 Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 51/216 (23%)

Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
           ++YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++++  + IK QIW
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 66  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
           DTAGQER+R+IT +YYR A                           +A            
Sbjct: 62  DTAGQERFRSITQSYYRSA---------------------------NA------------ 82

Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
                        +L YDI    ++  +  WLRE+  +A+  ++ +LVGNK DL   R V
Sbjct: 83  ------------LILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREV 130

Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
               A+ F++  ++ ++ETSA +S NVE  F ++  
Sbjct: 131 SQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLAC 166

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  146 bits (369), Expect = 5e-44
 Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 52/213 (24%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           +YD+LFK+++IGDSGVGKS+LL RF  N F+    +TIGV+F  R+++++ + +K QIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS YYRG  G ++VYD+    ++ NV+RWL+E+  + D            
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD------------ 109

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                    V  +LV                                GNK+D    + V 
Sbjct: 110 --------DVCKVLV--------------------------------GNKNDDPERKVVE 129

Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
            ++A  FA +  +S  ETSA ++ NVE  F  I
Sbjct: 130 TEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  144 bits (365), Expect = 8e-44
 Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 51/208 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FKVVL+G+  VGK++L+ R+  N+FN + +ST    F  +++ +  K I   IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY A+   YYR A GA+LVYDI    T  +                              
Sbjct: 61  RYHALGPIYYRDADGAILVYDI----TDAD------------------------------ 86

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                            +++ V++W++EL+     NI +++VGNK DL   R V   EA+
Sbjct: 87  -----------------SFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAE 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +A+       ETSA     +E  F ++
Sbjct: 130 EYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  136 bits (344), Expect = 1e-40
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 56/216 (25%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ + VD + +  QIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R++++  A+YR                                                 
Sbjct: 61  RFQSLGVAFYR------------------------------------------------- 71

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ----NIVIMLVGNKSDLRHLRAVPA 187
             GA   +LVYD+    ++E+++ W  E    A      N   +++GNK DL   R V  
Sbjct: 72  --GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEEKRQVST 129

Query: 188 DEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA 222
            +A+ + + + N+ + ETSA ++ NV+ AF+ I   
Sbjct: 130 KKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARL 165

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  130 bits (328), Expect = 3e-38
 Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 54/209 (25%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++++D + IK Q+WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R                                                   S+++ Y
Sbjct: 63  RFRK--------------------------------------------------SMVQHY 72

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI-MLVGNKSDLRHLRAVPADEA 190
           YR     + VYD+    ++ ++  W+ E   H+  N V  +LVGNK DLR    VP D A
Sbjct: 73  YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLA 132

Query: 191 KTFAERNNLSFIETSALD---STNVETAF 216
           + FA+ +++   ETSA D   + +VE  F
Sbjct: 133 QRFADAHSMPLFETSAKDPSENDHVEAIF 161

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  130 bits (329), Expect = 5e-38
 Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 54/219 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI-KAQIWDTAGQ 70
           FKV++IGD GVGK++++ R+    F+   K+TIGV+FA + I+ D  T+ + Q+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER+  +T  YY+GAVGA++V+D+ +  T+E V +W  +L      + V +  G P     
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADL-----DSKVTLPNGEP----- 110

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR-AVPADE 189
                                                I  +L+ NK DL+  R A   ++
Sbjct: 111 -------------------------------------IPALLLANKCDLKKERLAKDPEQ 133

Query: 190 AKTFAERNNLS-FIETSALDSTNVETAFQ----NILTAN 223
              F + N    + ETSA ++ N+E A +    NIL  +
Sbjct: 134 MDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKND 172

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  129 bits (326), Expect = 1e-37
 Identities = 72/209 (34%), Positives = 105/209 (50%), Gaps = 52/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           FKV+L+GDSGVGK+ LL RF    F   S   T+G++F  + + VD   +K QIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER+R++T AYYR A                           HA                 
Sbjct: 61  ERFRSVTHAYYRDA---------------------------HA----------------- 76

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                   LL+YD+    +++N+  WL E+ ++A  ++VIML+GNK+D+   R V  ++ 
Sbjct: 77  -------LLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSGERVVKREDG 129

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNI 219
           +  A+   + F+ETSA    NVE AF  +
Sbjct: 130 ERLAKEYGVPFMETSAKTGLNVELAFTAV 158

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  127 bits (319), Expect = 4e-37
 Identities = 68/208 (32%), Positives = 107/208 (51%), Gaps = 51/208 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           F+++LIGDSGVGK+ LL RFT NEF+    STIGV+F  ++I+VD   ++ QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY+ IT                                                   ++Y
Sbjct: 61  RYQTIT---------------------------------------------------KQY 69

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
           YR A G  LVYDI+   +Y+++ +W+ ++ ++A + +  +L+GNK+D    R V  ++  
Sbjct: 70  YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGN 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
             A+   + F ETSA  + N++ +F  +
Sbjct: 130 KLAKEYGMDFFETSACTNKNIKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  126 bits (318), Expect = 8e-37
 Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 51/210 (24%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           +FK+++IG+S VGK++ L R+  + F     ST+G++F  +++  + K IK QIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ERYR IT+AYYRGA+G +L+YDI    ++  V+ W  +++                    
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK-------------------- 100

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                             TY     W          N  ++LVGNK D+   R V A+  
Sbjct: 101 ------------------TYS----W---------DNAQVILVGNKCDMEDERVVSAERG 129

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +  A++    F E SA ++ NV+  F+ ++
Sbjct: 130 RQLADQLGFEFFEASAKENINVKQVFERLV 159

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  123 bits (311), Expect = 1e-35
 Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 62/224 (27%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT-------- 59
           YDYL K++ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  + +         
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 60  --IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI 117
             +  Q+WDTAGQER+R++T+A++R A+G LL++D    LT E                 
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD----LTSEQ---------------- 100

Query: 118 VIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQNIVIMLVGNK 176
                                          ++ NV  W+ +L+ HA  +N  I+L+GNK
Sbjct: 101 -------------------------------SFLNVRNWMSQLQAHAYCENPDIVLIGNK 129

Query: 177 SDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +DL   R V   +A+  A++  + + ETSA    NVE A + +L
Sbjct: 130 ADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  124 bits (312), Expect = 2e-35
 Identities = 71/213 (33%), Positives = 101/213 (47%), Gaps = 52/213 (24%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           YD  FK++LIGDSGVGKS+LL  F  +    +   TIGV+F  + + V  K +K  IWDT
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDT 69

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQER+R +TS+YYR A G +LVYD+ +  T+ N+                         
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNL------------------------- 104

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQNIVIMLVGNKSDLRHLRAVP 186
                                     + W +E+  ++ +Q+ V MLVGNK D    R V 
Sbjct: 105 -------------------------SDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS 139

Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
            +E    A+ +   F+E SA    NVE  F+ +
Sbjct: 140 REEGMALAKEHGCLFLECSAKTRENVEQCFEEL 172

Length = 211

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  123 bits (309), Expect = 6e-35
 Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 1/117 (0%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           +   FK+V++GD GVGK+ LL+R   +EF      TIG     ++I+  ++ IK Q+WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVG 123
           AGQE YR++   YYRGA G L+VYD      + E  E WL ELR+ A  ++ I+LVG
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVG 118

Length = 219

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  118 bits (297), Expect = 1e-33
 Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 49/208 (23%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + ++VD   +  QIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER+R++ + +YRG+   LL + +    +++N+  W +E   +AD                
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD---------------- 108

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                               +  E +              +++GNK D+   R V  +EA
Sbjct: 109 -------------------VKEPESF------------PFVILGNKIDIPE-RQVSTEEA 136

Query: 191 KTFAERN-NLSFIETSALDSTNVETAFQ 217
           + +   N +  + ETSA D+TNV  AF+
Sbjct: 137 QAWCRDNGDYPYFETSAKDATNVAAAFE 164

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  117 bits (295), Expect = 5e-33
 Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 52/205 (25%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++++  K I+ QIWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           + +ITSAYYR A G +LVYDI K  T++++ +W++ +  +A                   
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS------------------ 103

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                             E+ E               ++LVGNK D    R +   + + 
Sbjct: 104 ------------------EDAE---------------LLLVGNKLDCETDREITRQQGEK 130

Query: 193 FAER-NNLSFIETSALDSTNVETAF 216
           FA++   + F E SA D+ NV+  F
Sbjct: 131 FAQQITGMRFCEASAKDNFNVDEIF 155

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  116 bits (293), Expect = 7e-33
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 52/209 (24%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           YDYL K +L+GDS VGK  +L+              +G+++ T +I +D + +K Q+WDT
Sbjct: 3   YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDT 62

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           +GQ R+  I  +Y RGA G +LVYDI    +++ ++RW++E+ +HA         G P +
Sbjct: 63  SGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP--------GVPKI 114

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                       LVGN+  L   R V  
Sbjct: 115 --------------------------------------------LVGNRLHLAFKRQVAT 130

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAF 216
           ++A+ +AERN ++F E S L + N+  +F
Sbjct: 131 EQAQAYAERNGMTFFEVSPLCNFNITESF 159

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  114 bits (286), Expect = 5e-32
 Identities = 58/207 (28%), Positives = 88/207 (42%), Gaps = 54/207 (26%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK--TIKAQIWDTAGQ 70
           KV+++G+  VGKS+++ RF +  F  + K TIGV+F  + I + Q    ++  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           E + AIT AYYRGA   +LV+      ++E +E W  +         V    G       
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEK---------VEAECG------- 105

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                               +I ++LV  K DL     +  +EA
Sbjct: 106 ------------------------------------DIPMVLVQTKIDLLDQAVITNEEA 129

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQ 217
           +  A+R  L    TS  D  NV   F+
Sbjct: 130 EALAKRLQLPLFRTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  113 bits (286), Expect = 5e-32
 Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 51/209 (24%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++G  GVGKS L  RF   EF  E   TI  +   + I VD +T    I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           + A+   Y R   G +LVY I    ++E ++     +R+                     
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKN----IREQ-------------------- 95

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                   +  ++D   +++ I+LVGNK DL + R V  +E + 
Sbjct: 96  ------------------------ILRVKD--KEDVPIVLVGNKCDLENERQVSTEEGEA 129

Query: 193 FAERNNLSFIETSALDSTNVETAFQNILT 221
            AE     F+ETSA  + N++  F  ++ 
Sbjct: 130 LAEEWGCPFLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  110 bits (276), Expect = 2e-30
 Identities = 53/208 (25%), Positives = 89/208 (42%), Gaps = 46/208 (22%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           KV+ +G+SGVGKS ++ R+    F  +   TIG+++  + + V  K ++   +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           Y  + + +Y+   G LLVYD+    ++E ++ WL+E++            GP   +    
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQE---------GGPHGNME--- 109

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                             NIV+++  NK DL   RAV  DE + 
Sbjct: 110 ----------------------------------NIVVVVCANKIDLTKHRAVSEDEGRL 135

Query: 193 FAERNNLSFIETSALDSTNVETAFQNIL 220
           +AE     + ETSA     V   FQ + 
Sbjct: 136 WAESKGFKYFETSACTGEGVNEMFQTLF 163

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  103 bits (259), Expect = 4e-28
 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 55/210 (26%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K++L+GDS VGKS L+ RF  + +  +  ST  +     + + + KTI    WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           ++ + ++YY  A   +LV+D+ + +TY+N+ +W  E                        
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEE------------------------ 97

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                   LRE R      I  ++V NK DL         +   
Sbjct: 98  ------------------------LREYRPE----IPCIVVANKIDL-DPSVT--QKKFN 126

Query: 193 FAERNNLSFIETSALDSTNVETAFQNILTA 222
           FAE++NL     SA D TNV   FQ+ +  
Sbjct: 127 FAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  102 bits (257), Expect = 1e-27
 Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 51/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  +   TI  +   + I++D +     I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            + A+   Y R   G LLVY I    ++E +++  RE                  +LR  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK-FREQ-----------------ILR-- 99

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                    V D                       ++ I+LVGNK DL   R V  +E K
Sbjct: 100 ---------VKD---------------------RDDVPIVLVGNKCDLESERVVSTEEGK 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A +    F+ETSA +  NV+ AF +++
Sbjct: 130 ELARQWGCPFLETSAKERVNVDEAFYDLV 158

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  102 bits (256), Expect = 2e-27
 Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 51/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  E   TI  +   + I++D +     I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            + A+   Y R   G LLVY I    ++E + +  RE                  +LR  
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK-FREQ-----------------ILR-- 101

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                    V D                       ++ I+LVGNK DL + R V  +E K
Sbjct: 102 ---------VKD---------------------RDDVPIVLVGNKCDLENERVVSTEEGK 131

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A +    F+ETSA +  NV+ AF +++
Sbjct: 132 ELARQWGCPFLETSAKERINVDEAFYDLV 160

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  100 bits (251), Expect = 2e-26
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 57/212 (26%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           KVV++G   VGK++L+ R+  + F     ++TIG  F  + + V ++ +   IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY A++  YYRGA  A++ YD+    ++E  + W++EL+                     
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ--------------------- 100

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL----RHLRAVPA 187
                               N+E           ++  I L G KSDL    R LR V  
Sbjct: 101 --------------------NLE-----------EHCKIYLCGTKSDLIEQDRSLRQVDF 129

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
            + + FA+       ETS+    NV+  FQ +
Sbjct: 130 HDVQDFADEIKAQHFETSSKTGQNVDELFQKV 161

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 95.3 bits (237), Expect = 1e-24
 Identities = 43/112 (38%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           KV+++GD  VGK+ L++RF ++ F+   K+TIGV+F     +V       Q+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVG 123
           ++ I S YYRGA   ++V+D+    + E+  +WL + L+++   ++++ LVG
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVG 113

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 95.2 bits (237), Expect = 1e-24
 Identities = 59/205 (28%), Positives = 88/205 (42%), Gaps = 51/205 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KV+++G  GVGKS L  +F  +EF  + + T    +  + + +D + ++  I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQLNILDTAGQE 59

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y AI   Y+R   G LLV+ I    ++      L E R                     
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTA----LAEFR--------------------- 94

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                 E+ LR      D N+ ++LVGNK DL   R V  +EA 
Sbjct: 95  ----------------------EQILRVKE---DDNVPLLLVGNKCDLEDKRQVSVEEAA 129

Query: 192 TFAERNNLSFIETSALDSTNVETAF 216
             AE+  ++++ETSA    NV+  F
Sbjct: 130 NLAEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 94.1 bits (235), Expect = 3e-24
 Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 66/217 (30%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD  VGK+ LL  +T N+F  E   T+  +  + ++ VD K +   +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           Y  +                    L+Y                ++               
Sbjct: 61  YDRLRP------------------LSYPQT-------------DVF-------------- 75

Query: 133 RGAVGALLVYDIAKHLTYENVER-WLRELRDHADQNIVIMLVGNKSDLR----------- 180
                 LL + +    ++ENV+  W  E++ +   N+ I+LVG K DLR           
Sbjct: 76  ------LLCFSVDSPSSFENVKTKWYPEIKHYC-PNVPIILVGTKIDLRDDGNTLKKLEK 128

Query: 181 HLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAF 216
             + +  +E +  A+      ++E SAL    ++  F
Sbjct: 129 KQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 93.5 bits (233), Expect = 4e-24
 Identities = 60/209 (28%), Positives = 88/209 (42%), Gaps = 62/209 (29%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT----IKAQIWDT 67
           FK+VL+GD G GK+  + R    EF  +  +T+GVE       +D  T    I+  +WDT
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH----PLDFHTNRGKIRFNVWDT 56

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQE++                                   LRD                
Sbjct: 57  AGQEKFGG---------------------------------LRD---------------- 67

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
              YY     A++++D+   +TY+NV  W R+L     +NI I+L GNK D++  R V  
Sbjct: 68  --GYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD-RKVKP 123

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAF 216
            +  TF  + NL + E SA  + N E  F
Sbjct: 124 -KQITFHRKKNLQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 92.6 bits (230), Expect = 2e-23
 Identities = 62/211 (29%), Positives = 90/211 (42%), Gaps = 51/211 (24%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-SIQVDQKTIKAQIWDTAGQE 71
           K+V++GD GVGK+ L  +   N F      TI  E + R  + VD +    ++ DTAGQE
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI--EDSYRKQVVVDGQPCMLEVLDTAGQE 58

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   + R   G +LVY I    T+E VER+                          
Sbjct: 59  EYTALRDQWIREGEGFILVYSITSRSTFERVERF-------------------------- 92

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                              E ++R    ++D +  ++ IM+VGNK D  + R V  +E  
Sbjct: 93  ------------------REQIQR----VKDESAADVPIMIVGNKCDKVYEREVSTEEGA 130

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A R    FIE SA  + NVE AF  ++ A
Sbjct: 131 ALARRLGCEFIEASAKTNVNVERAFYTLVRA 161

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 90.2 bits (224), Expect = 8e-23
 Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 51/211 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F ++ F  +   TI   + T+  ++D +  +  I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            + A+   Y R   G LLV+ +    ++E V+++  +                  +LR  
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQ------------------ILR-- 101

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       ++D  +  ++  LVGNK+DL H R V  +E +
Sbjct: 102 ----------------------------VKDRDEFPMI--LVGNKADLEHQRQVSREEGQ 131

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A +  + +IETSA D  NV+ AF +++  
Sbjct: 132 ELARQLKIPYIETSAKDRVNVDKAFHDLVRV 162

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 90.6 bits (225), Expect = 1e-22
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 49/209 (23%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQ 70
            K+V++GD   GK++L+ RF +  F    K TIG++F +R I +     +  Q+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           +    +   Y  GA    LVYDI    ++EN+E WL                        
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSV---------------------- 98

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                     ++++ + ++    ++LVGNK+DL H R V A++ 
Sbjct: 99  --------------------------VKKVNEESETKPKMVLVGNKTDLEHNRQVTAEKH 132

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNI 219
             FA+ N++  I  SA     V   FQ I
Sbjct: 133 ARFAQENDMESIFVSAKTGDRVFLCFQRI 161

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 89.2 bits (222), Expect = 2e-22
 Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 67/218 (30%)

Query: 14  VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73
           +V++GD  VGK+ LL  +T N F  +   T+   ++   ++VD K ++  +WDTAGQE Y
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQEDY 59

Query: 74  RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYR 133
                                        +R LR L  + D ++                
Sbjct: 60  -----------------------------DR-LRPL-SYPDTDVF--------------- 73

Query: 134 GAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGNKSDLR---HLRAVPADE 189
                L+ + +    ++ENV E+W  E++     N+ I+LVG K DLR         + +
Sbjct: 74  -----LICFSVDSPASFENVKEKWYPEVKHFC-PNVPIILVGTKLDLRNDKSTLEELSKK 127

Query: 190 AKTFAERNN----------LSFIETSALDSTNVETAFQ 217
            +                 + ++E SAL    V   F+
Sbjct: 128 KQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFE 165

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 89.0 bits (221), Expect = 6e-22
 Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK++L+GD GVGK+  + R    EF  +   T+GVE        +   I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY     A++++D+   +TY+NV  W R++    + NI I+LVG
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NIPIVLVG 120

Length = 215

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 89.0 bits (221), Expect = 7e-22
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 1/112 (0%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY     A++++D+   LTY+NV  W R+L     +NI I+L G
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCG 124

Length = 219

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 86.9 bits (216), Expect = 2e-21
 Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 51/208 (24%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+ ++G   VGKS+L  +F    F      TI   F ++ I    +    +I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           Y  +   Y  G  G +LVY +    ++E V+                             
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVK----------------------------- 92

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                  ++YD                L     +++ I+LVGNKSDL   R V A+E K 
Sbjct: 93  -------VIYDKI--------------LDMLGKESVPIVLVGNKSDLHMERQVSAEEGKK 131

Query: 193 FAERNNLSFIETSALDSTNVETAFQNIL 220
            AE    +F+E+SA ++ NVE AF+ ++
Sbjct: 132 LAESWGAAFLESSAKENENVEEAFELLI 159

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 86.6 bits (215), Expect = 4e-21
 Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 68/224 (30%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDT 67
           D   K+V++GD G GK+ LL  + +  F  E   T+  E    ++QV + K I+  +WDT
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDT 59

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQE                   YD  + L+Y +V             +++         
Sbjct: 60  AGQED------------------YDRLRPLSYPDV-------------DVI--------- 79

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGNKSDLR------ 180
                      L+ Y +    + +NV ++W  E+  H      I+LVG K+DLR      
Sbjct: 80  -----------LICYSVDNPTSLDNVEDKWYPEVN-HFCPGTPIVLVGLKTDLRKDKNSV 127

Query: 181 -HLRA-----VPADEAKTFAER-NNLSFIETSALDSTNVETAFQ 217
             LRA     V  ++ ++ A+    +++IE SA    NV+  F 
Sbjct: 128 SKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFD 171

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 86.0 bits (212), Expect = 4e-21
 Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 51/186 (27%)

Query: 34  NEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI 93
           + F+   +STIG++F ++++ +D+  ++ Q+WDTAGQER+R                   
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFR------------------- 43

Query: 94  AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV 153
                                           SL+  Y R +  A++VYDI    ++EN 
Sbjct: 44  --------------------------------SLIPSYIRDSAAAIVVYDITNRQSFENT 71

Query: 154 ERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE 213
            +W++++ +   ++++I LVGNK+DL  LR V  +E    A+  N  F ETSA    N++
Sbjct: 72  TKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131

Query: 214 TAFQNI 219
             F+ I
Sbjct: 132 VLFKKI 137

Length = 176

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 83.4 bits (206), Expect = 6e-20
 Identities = 57/209 (27%), Positives = 85/209 (40%), Gaps = 51/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +N F  E   TI   +  +   +D++T    I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L VY I    ++E +  +  ++    D++ V M+          
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI---------- 114

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                   LVGNK DL   R V   E +
Sbjct: 115 ----------------------------------------LVGNKCDLDSERQVSTGEGQ 134

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A+   + F+ETSA    NV+ AF  ++
Sbjct: 135 ELAKSFGIPFLETSAKQRVNVDEAFYELV 163

Length = 189

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 81.0 bits (200), Expect = 3e-19
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 54/211 (25%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRN--EFNLESKSTIGVEFATRSIQVDQ--KTIKAQIWDTA 68
           +  ++GD  VGKS L+  F  +   F      T G +   +++ V     +++  I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQE +  +    +       +VYD+   +++ N  RW+  +R H+     +   G     
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHG---LHTPG----- 113

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                     +LVGNK DL   R V A 
Sbjct: 114 ------------------------------------------VLVGNKCDLTDRREVDAA 131

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNI 219
           +A+  A+ N L F ETSA +    E  F ++
Sbjct: 132 QAQALAQANTLKFYETSAKEGVGYEAPFLSL 162

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 80.7 bits (199), Expect = 3e-19
 Identities = 56/208 (26%), Positives = 85/208 (40%), Gaps = 51/208 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +KVV++G  GVGKS L  +F    F  +   TI  +F  + I+VD      +I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ ++   Y +   G ++VY +    T++++    + +RD     IV             
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDI----KPMRD----QIV------------- 99

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                        R    + + I+LVGNK DL   R V + E +
Sbjct: 100 -----------------------------RVKGYEKVPIILVGNKVDLESEREVSSAEGR 130

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
             AE     F+ETSA   T V   F  I
Sbjct: 131 ALAEEWGCPFMETSAKSKTMVNELFAEI 158

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 79.4 bits (196), Expect = 3e-19
 Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           KVV+IGD G GKS+LLS+    EF  E     G   A  +++VD  T    IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVER---WLRELRDHADQNIVIMLVG 123
            +     + + A   LLVYD+    +   V R   WL  LR      I ++LVG
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRK-LGGKIPVILVG 113

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 80.4 bits (199), Expect = 4e-19
 Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 53/211 (25%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+ ++G SGVGKS L  RF    F  E +  +   + +R + +D + +  +I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
                                                               P  L R  
Sbjct: 60  NED-------------------------------------------------PESLERSL 70

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHA--DQNIVIMLVGNKSDLRHLRAVPADEA 190
           R A G +LVY I    +++ V + L+ +R+    D  I ++LVGNK+DL H R V  +E 
Sbjct: 71  RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADLLHSRQVSTEEG 130

Query: 191 KTFAERNNLSFIETSA-LDSTNVETAFQNIL 220
           +  A      F E SA  +   V+  F  + 
Sbjct: 131 QKLALELGCLFFEVSAAENYLEVQNVFHELC 161

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 80.1 bits (198), Expect = 7e-19
 Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 43/206 (20%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K VL+GD  VGK++L+  +T N +  E   T    F+   + VD K ++ Q+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           +  +    Y      LL + +    +++N+ E+W+ E+R H  +  +I LVG  + LR  
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPII-LVGTQADLRT- 118

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                            D N++I L          + V    AK
Sbjct: 119 ---------------------------------DVNVLIQLARYGE-----KPVSQSRAK 140

Query: 192 TFAER-NNLSFIETSALDSTNVETAF 216
             AE+     +IE SAL   N++  F
Sbjct: 141 ALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 79.4 bits (196), Expect = 1e-18
 Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 52/210 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +N F      TI   +  + +++D +    +I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQ-VEIDGRQCDLEILDTAGTE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+   Y +   G LLVY +    T E     L ELR+                    
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSV----TSEASLNELGELREQV------------------ 98

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       LR     N+ ++LVGNK+DL   R V  ++  
Sbjct: 99  ----------------------------LRIKDSDNVPMVLVGNKADLEDDRQVSREDGV 130

Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
           + +++  N+ F ETSA   TNV+  F +++
Sbjct: 131 SLSQQWGNVPFYETSARKRTNVDEVFIDLV 160

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 76.3 bits (188), Expect = 2e-17
 Identities = 57/205 (27%), Positives = 84/205 (40%), Gaps = 52/205 (25%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L V+ I    ++E++                             
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDI----------------------------- 91

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                          H   E ++R    ++D  D  +V  LVGNK DL   R V   + +
Sbjct: 92  ---------------HTYREQIKR----VKDSDDVPMV--LVGNKCDLAA-RTVSTRQGQ 129

Query: 192 TFAERNNLSFIETSALDSTNVETAF 216
             A+   + +IETSA     VE AF
Sbjct: 130 DLAKSYGIPYIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 76.4 bits (188), Expect = 2e-17
 Identities = 55/209 (26%), Positives = 81/209 (38%), Gaps = 49/209 (23%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I   +     QI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+           +LVY I    + E       EL+                     
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLE-------ELKP-------------------- 93

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                             YE +     E++ +  + I IMLVGNK D    R V + E  
Sbjct: 94  -----------------IYELI----CEIKGNNLEKIPIMLVGNKCDESPSREVSSSEGA 132

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A   N +F+ETSA  + NV+  FQ +L
Sbjct: 133 ALARTWNCAFMETSAKTNHNVQELFQELL 161

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 76.6 bits (188), Expect = 2e-17
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 1/107 (0%)

Query: 17  IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI 76
           +GD G GK+  + R    EF  +  +T+GVE        ++  I+  +WDTAGQE++  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 77  TSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
              YY     A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLV-RVCENIPIVLCG 106

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 75.9 bits (187), Expect = 3e-17
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+ L+GD+ +GK++L+ ++   EF+ E   T+GV F  ++I +    I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           +  +     + AV  L ++D+ +  T  +++ W R+ R      I I LVG
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVG 111

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 74.0 bits (182), Expect = 9e-17
 Identities = 47/212 (22%), Positives = 72/212 (33%), Gaps = 56/212 (26%)

Query: 15  VLIGDSGVGKSNLLSRFTRNEFNLESK---STIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           V++G  GVGKS+LL+     E    S    +T   +      ++D+  +K  + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            +  +                                              G   L R  
Sbjct: 59  EFGGL----------------------------------------------GREELARLL 72

Query: 132 YRGAVGALLVYDIAKHLTYENVER-WLRELRDHADQNIVIMLVGNKSDLR-HLRAVPADE 189
            RGA   LLV D     + E+ +   LR LR      I I+LVGNK DL           
Sbjct: 73  LRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKIDLLEEREVEELLR 129

Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNILT 221
            +  A+   +   E SA     V+  F+ ++ 
Sbjct: 130 LEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 71.8 bits (176), Expect = 9e-16
 Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VD  T+   +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQED 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
           Y  +    YRGA   LL + +    +YENV ++W+ ELR +A   + I+LVG    LR
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYA-PGVPIVLVGTKLDLR 118

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 70.7 bits (173), Expect = 2e-15
 Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 52/210 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  +   TI  +   + I+VD +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+   Y +   G  LVY I    ++ +    L++LR+                    
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFND----LQDLREQI------------------ 98

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       LR    +++ ++LVGNK DL   R V  +E +
Sbjct: 99  ----------------------------LRVKDTEDVPMILVGNKCDLEDERVVSKEEGQ 130

Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
             A +  N  F+ETSA    NV+  F +++
Sbjct: 131 NLARQWGNCPFLETSAKSKINVDEIFYDLV 160

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 71.5 bits (175), Expect = 3e-15
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 33/212 (15%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           KVVL+GD  VGK++LL R+    F  ++ ST+G  F  +  Q     I   IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLK--QWGPYNI--SIWDTAGREQ 56

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           +  + S Y RGA   +L YD++   + E +E     L D A+++ +  +VG    L    
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 133 RGAV-----GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
             A      G  +  +  + +T E+ + + + +  +       ML  +          PA
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKY------KMLDED--------LSPA 162

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
            E   F         ETSA    NV+  F+ +
Sbjct: 163 AEKMCF---------ETSAKTGYNVDELFEYL 185

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 69.9 bits (171), Expect = 4e-15
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 51/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + ++VD +    +I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+   Y +   G +LVY I    T+ +    L++LR+                    
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFND----LQDLREQI------------------ 98

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       LR    +++ ++LVGNK DL   R V  ++ +
Sbjct: 99  ----------------------------LRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ 130

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A +   +F+ETSA    NV   F +++
Sbjct: 131 NLARQWGCAFLETSAKAKINVNEIFYDLV 159

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 69.4 bits (170), Expect = 8e-15
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+VL+GDS  GK+ LL  F ++ F      T+  E  T S +VD++ I+  +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
           Y  +    Y  +   L+ +DI++  T ++V ++W  E+R+    N  ++LVG  S LR
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC-PNTPVLLVGCKSDLR 118

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 69.3 bits (169), Expect = 1e-14
 Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N F  E   T+   ++ ++  VD +T+   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLR 129
           Y  + +  Y      ++ + IA   +YENV  +W  E+  H   N+ I+LVG    LR
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLR 120

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 69.1 bits (169), Expect = 1e-14
 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           KVV++GD   GK++LL+ FTR  F    + T+  E     I VD   ++  +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLR 129
           +  + S  Y      +L + +    + ENVE +WL E+R H    + ++LV     LR
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLR 117

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 53/209 (25%), Positives = 82/209 (39%), Gaps = 50/209 (23%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           ++VVL+GDSGVGKS+L + FT   +   +    G +   R++ VD +     ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
               +  +  +     ++VY +    ++E                           LR  
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASE-----------------------LRIQ 97

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                    LR  R    ++I I+LVGNKSDL   R V   E +
Sbjct: 98  -------------------------LRRARQA--EDIPIILVGNKSDLVRSREVSVQEGR 130

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A   +  FIETSA    NV+  F+ I+
Sbjct: 131 ACAVVFDCKFIETSAALQHNVDELFEGIV 159

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 59/218 (27%), Positives = 85/218 (38%), Gaps = 67/218 (30%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
                             YD  + L+Y   + +L          I   LV P S      
Sbjct: 62  ------------------YDRLRPLSYPQTDVFL----------ICFSLVSPAS------ 87

Query: 133 RGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
                            +ENV  +W  E+R H   N  I+LVG K DLR           
Sbjct: 88  -----------------FENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKE 129

Query: 182 --LRAVPADEAKTFA-ERNNLSFIETSALDSTNVETAF 216
             L  +   +    A E   + ++E SAL    ++T F
Sbjct: 130 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 14/118 (11%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-KTIKAQIWDTAGQE 71
           K++L+G  GVGK++L  +    +F+ +  ST G+      I   + K I+  +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 72  RYRA-----ITS-AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
            Y A     +TS + Y      LLV+D+        V  WLR+++     + VI LVG
Sbjct: 63  IYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVI-LVG 113

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 63.1 bits (153), Expect = 2e-12
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S ++D + I+  +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
           Y  +    Y  +   L+ +DI++  T ++V ++W  E+++    N  ++LVG  S LR
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 122

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK++LL  FT  EF  E   T+   + T   +VD K ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEE 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLR 129
           Y  +    Y  A   L+ + I    + ENV  +W+ E+R +   N+ ++LVG    LR
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLR 118

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 67/219 (30%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
                             YD  + L+Y + +              VI             
Sbjct: 62  ------------------YDRLRPLSYPDTD--------------VI------------- 76

Query: 133 RGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
                 L+ + I    + EN+ E+W  E++ H   N+ I+LVGNK DLR+          
Sbjct: 77  ------LMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHTIRELAK 129

Query: 182 --LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQ 217
                V  +E +  AE+     ++E SA     V   F+
Sbjct: 130 MKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 51/205 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS +  +F  + F      TI   + T+  ++D +     I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQA 61

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            + A+   Y R   G ++ Y +    +++       E ++                    
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEA----SEFKE-------------------- 97

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                   L+  +   LT +                I ++LVGNK DL   R V  +E +
Sbjct: 98  --------LITRV--RLTED----------------IPLVLVGNKVDLEQQRQVTTEEGR 131

Query: 192 TFAERNNLSFIETSALDSTNVETAF 216
             A   N  F ETSA     ++ AF
Sbjct: 132 NLAREFNCPFFETSAALRFYIDDAF 156

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 55.4 bits (133), Expect = 1e-09
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +  + F  E   T+   +A  S+ V  K     ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQE 59

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
            Y  +    Y      L+ + +    +++NV E W+ EL+++A  N+  +L+G    LR
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPYLLIGTQIDLR 117

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-----DQKTIKAQIWDT 67
           KV+++GDSGVGKS+L+    +N+       T+G     R         ++KT   ++WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 68  AGQ----ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE 108
            G     E  ++  + +Y    G + V+D+    + +N+ RW  E
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLE 106

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 13/110 (11%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG-------VEFAT-----RSIQVD-QKT 59
           +V+++GDSGVGKS+L+    +         TIG       + + +      SI+ D ++ 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 60  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLREL 109
              ++WD +G ERY+   S +Y    G + V+D+++  T  ++++W  E+
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEV 132

Length = 334

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H       +LVG    LR  
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD- 119

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELR 161
              +    L  +  K +T E  E+  R+L+
Sbjct: 120 -DPSTIEKLAKNKQKPITPETGEKLARDLK 148

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 52/209 (24%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           ++V +G +GVGK+ L+ RF  + F  + + T+  E  ++  +V    +   I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           + A+     +      LVY +    ++E V+R    LR+                     
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKR----LREE-------------------- 95

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                   + E+++     IV+  VGNK D    R V A +A +
Sbjct: 96  ------------------------ILEVKEDKFVPIVV--VGNKIDSLAERQVEAADALS 129

Query: 193 FAERN-NLSFIETSALDSTNVETAFQNIL 220
             E + N  F+E SA D+ NV   F+ +L
Sbjct: 130 TVELDWNNGFVEASAKDNENVTEVFKELL 158

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 46/212 (21%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++V++G S VGK+ ++SRF    F  +   TI  +F  +   +  +  +  I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 72  RYRAITS-AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
            + A+   +   G V  +LV+ +    ++E V R   ++ +                   
Sbjct: 60  PFPAMRRLSILTGDV-FILVFSLDNRESFEEVCRLREQILE------------------- 99

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                          K+ T ENV+             I +++ GNK+D    R V  DE 
Sbjct: 100 ----------TKSCLKNKTKENVK-------------IPMVICGNKADRDFPREVQRDEV 136

Query: 191 KTF-AERNNLSFIETSALDSTNVETAFQNILT 221
           +       N ++ E SA  ++N++  F+ + +
Sbjct: 137 EQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           +++++G  G GK+ +L +    E    +  TIG  F   +++   K +K  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVV-TTIPTIG--FNVETVEY--KNVKFTVWDVGGQDK 55

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 122
            R +   YY    G + V D +     E  +  L +L +  +     +L+
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLI 105

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 3/112 (2%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD+  GK+ LL  F ++ +  ES      E  T S ++D+  I+  +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYP-ESYVPTVFENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y  +   L+ +DI++  T ++V ++W  E ++    N  ++LVG
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKLVLVG 112

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---DQKTIKAQIWDTA 68
            +V++G    GK+ +L R   NEF + +  T G  F T  I+V   + K +    WD  
Sbjct: 4  LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKG--FNTEKIKVSLGNAKGVTFHFWDVG 60

Query: 69 GQERYRAITSAYYRGAVGALLVYD 92
          GQE+ R +  +Y R   G + V D
Sbjct: 61 GQEKLRPLWKSYTRCTDGIVFVVD 84

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+VL+GD   GK+ +L    ++ +      T+  E  T  ++ +++ ++  +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIMLVGPPSLLR 129
           Y  +    Y  +   LL +DI++   +++ +++W  E+ D+   +  I+L+G  + LR
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYC-PSTRILLIGCKTDLR 130

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
          +KV+++G    GK+ +L +F   E  + +  TIG  VE      ++  K I+  +WD  G
Sbjct: 16 YKVIIVGLDNAGKTTILYQFLLGEV-VHTSPTIGSNVE------EIVYKNIRFLMWDIGG 68

Query: 70 QERYRAITSAYYRGAVGALLVYD 92
          QE  R+  + YY      +LV D
Sbjct: 69 QESLRSSWNTYYTNTDAVILVID 91

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 6/147 (4%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           ++VLIGD GVGKS+L+      EF         +   T    V  + +   I DT+ + +
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV--LPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            RA  +A  R A    LVY + +  T E +  +WL  +R      + I+LVG  S LR  
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDG 120

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLR 158
              A     +  I     +  +E  + 
Sbjct: 121 SSQAGLEEEMLPIMN--EFREIETCVE 145

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 14  VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73
           + L+G    GK+ L++     +F+ ++  T+G  F  R +     TIK  +WD  GQ R+
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRF 57

Query: 74  RAITSAYYRGAVGALLVYDIAKHLTYENVERWLREL 109
           R++   Y RG    + V D A     E  +  L +L
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDL 93

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 14  VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG---- 69
            VL G+SG GK+ LL R  R    L ++  + VE  +       K +  +I    G    
Sbjct: 7   GVLTGESGSGKTTLLRRLARQ---LPNRRVVYVEAPSLG---TPKDLLRKILRALGLPLS 60

Query: 70  ----QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
                E   AI  A  R     LL+ D A+HL+ E +E  LR+L D +++ I ++LVG P
Sbjct: 61  GGTTAELLEAILDALKRRGRP-LLIIDEAQHLSLEALE-ELRDLYDLSEKGIQVILVGTP 118

Query: 126 SLLRR 130
            L + 
Sbjct: 119 ELRKL 123

Length = 124

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
          +VV +G  G GK+ +L +  ++EF ++   TIG    T    V+ K +K  IWD  G+ +
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 73 YRAITSAYYRGAVGALLVYD 92
           R +   YY      + V D
Sbjct: 56 LRPLWKHYYLNTQAVVFVID 75

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           +++++G    GK+ +L +    E  + +  TIG    T    V  K I   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGES-VTTIPTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 73  YRAITSAYYRGAVGALLVYDIA-KHLTYENVERWLRELRDHADQNIVIML 121
            R +   YY    G + V D   +    E  E   R L +   ++ VI++
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILV 119

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 51/228 (22%), Positives = 81/228 (35%), Gaps = 51/228 (22%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST--------------IGVEFATRSIQV- 55
             K V++GD+ VGK+ L+     N+   + +                +  E   RS  V 
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 56  DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLRELRDHAD 114
           D  ++  ++WDT G +  +    AY R  V  LL + IA   +  NV+  W  E+R    
Sbjct: 62  DGVSVSLRLWDTFG-DHDKDRRFAYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIRHFCP 119

Query: 115 QNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 174
           +  VI LVG    LR                     + V R  R L              
Sbjct: 120 RVPVI-LVGCKLDLRYADL-----------------DEVNRARRPLARPIKNA------- 154

Query: 175 NKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
                     +P +  +  A+   + + ETS +    V+  F N + A
Sbjct: 155 --------DILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
          +V+L+G    GKS LL +    E  + +  T+G  F    +Q+ +K +   +WD  GQE+
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAEL-VTTIPTVG--FNVEMLQL-EKHLSLTVWDVGGQEK 56

Query: 73 YRAITSAYYRGAVGALLVYD 92
           R +   Y     G + V D
Sbjct: 57 MRTVWKCYLENTDGLVYVVD 76

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           +++++G    GK+ +L +    + ++ +  T+G    T    V  K +K  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 65

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWL------RELRD 111
            R +   YY G  G + V D A     +   + L      RE+RD
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRD 110

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 23/107 (21%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRN----------------EFNLESKSTIGVEFATRSIQVD 56
           K+V+IG  G GK+     F R                     +  +T+ ++F   SI++D
Sbjct: 12  KIVVIGPVGAGKTT----FVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELD 65

Query: 57  QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVE 103
           + T    ++ T GQER++ +     RGAVGA+++ D ++ +T+   E
Sbjct: 66  EDT-GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE 111

Length = 187

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ--VDQKTIKAQIWDTAG- 69
           +V L+G   VGKS L++  T  +  + S         TR     V     +  + DT G 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVSD----YPGTTRDPILGVLGLGRQIILVDTPGL 56

Query: 70  -----QERYRAITSAY---YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
                + +     + +    R A   LLV D ++ LT E+ E  L EL     + I+++L
Sbjct: 57  IEGASEGKGVEGFNRFLEAIREADLILLVVDASEGLT-EDDEEILEELEKLPKKPIILVL 115

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 139 LLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN 197
            LVY + +  T E +  +WL  +R      + I+LVGNKSDLR   +    E +     N
Sbjct: 77  CLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMN 135

Query: 198 NLSFIET----SALDSTNVETAF 216
               IET    SA    NV   F
Sbjct: 136 EFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G    GK+ +L +    E  + +  TIG  F   ++    K +K  +WD  GQE
Sbjct: 15 MRILILGLDNAGKTTILYKLKLGEI-VTTIPTIG--FNVETVTY--KNVKFTVWDVGGQE 69

Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
            R +   Y+      + V D A
Sbjct: 70 SLRPLWRNYFPNTDAVIFVVDSA 92

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKS--------TIGVEFATRSIQVDQKTIKAQIW 65
          V+++G    GK+  L + T+ +F+   K         T+G+   T  I+V +  +    W
Sbjct: 2  VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGT--IEVGKARLM--FW 56

Query: 66 DTAGQERYRAITSAYYRGAVGALLVYD 92
          D  GQE  R++   YY  + G + V D
Sbjct: 57 DLGGQEELRSLWDKYYAESHGVIYVID 83

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 43/211 (20%), Positives = 78/211 (36%), Gaps = 68/211 (32%)

Query: 14  VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE-----FATRSIQV---DQKTIKAQIW 65
           +V+ G   VGKS+L+++ TR +           E     F T+S+ V   D K ++ Q+ 
Sbjct: 3   LVIAGYPNVGKSSLVNKLTRAK----------PEVAPYPFTTKSLFVGHFDYKYLRWQVI 52

Query: 66  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
           DT G                  +L  D                 R   ++N + M     
Sbjct: 53  DTPG------------------IL--D-----------------RPLEERNTIEMQ---- 71

Query: 126 SLLR-RYYRGAVGALLVYDIAKH--LTYENVERWLRELRDHADQNIVIMLVGNKSDLRHL 182
           ++    + R AV  L   D ++    + E      +E++   ++ ++++L  NK DL   
Sbjct: 72  AITALAHLRAAV--LFFIDPSETCGYSIEEQLSLFKEIKPLFNKPVIVVL--NKIDLLTE 127

Query: 183 RAVPADEAKTFAERNNLSFIETSALDSTNVE 213
             +   E     E+     I+ S L    V+
Sbjct: 128 EDLSEIE--KELEKEGEEVIKISTLTEEGVD 156

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
          +++++G    GK+ +L +    E  + +  TIG    T    V+ K +K  +WD  GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEV-VTTIPTIGFNVET----VEYKNLKFTMWDVGGQDK 73

Query: 73 YRAITSAYYRGAVGALLVYD 92
           R +   YY+   G + V D
Sbjct: 74 LRPLWRHYYQNTNGLIFVVD 93

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG0084|consensus	205		100.0
KOG0078|consensus	207		100.0
KOG0080|consensus	209		100.0
KOG0098|consensus	216		100.0
KOG0092|consensus	200		100.0
KOG0087|consensus	222		100.0
KOG0094|consensus	221		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0394|consensus	210		100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0093|consensus	193		100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0086|consensus	214		100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
KOG0079|consensus	198		100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
KOG0095|consensus	213		100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.98
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.98
KOG0091|consensus	213		99.98
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.98
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.98
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.98
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.98
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.98
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.98
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.98
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.98
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.97
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
KOG0088|consensus	218		99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
KOG0097|consensus	215		99.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
PLN03118	211	Rab family protein; Provisional	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.96
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
KOG0081|consensus	219		99.96
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
KOG0395|consensus	196		99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.95
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.95
PLN00223	181	ADP-ribosylation factor; Provisional	99.95
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.95
KOG0083|consensus	192		99.95
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.95
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.95
KOG0393|consensus	198		99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
PTZ00133	182	ADP-ribosylation factor; Provisional	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.94
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.94
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.94
KOG4252|consensus	246		99.94
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.94
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.94
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.93
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.93
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.93
PLN00023	334	GTP-binding protein; Provisional	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
PTZ00099	176	rab6; Provisional	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.92
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.92
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.92
KOG0073|consensus	185		99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.91
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
COG1100	219	GTPase SAR1 and related small G proteins [General	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
PRK04213	201	GTP-binding protein; Provisional	99.9
KOG0070|consensus	181		99.9
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.89
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.88
PRK15494	339	era GTPase Era; Provisional	99.88
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.88
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.87
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.87
PRK12296	500	obgE GTPase CgtA; Reviewed	99.87
PRK11058	426	GTPase HflX; Provisional	99.87
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.87
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
KOG0071|consensus	180		99.87
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
KOG0096|consensus	216		99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
PRK12298	390	obgE GTPase CgtA; Reviewed	99.86
KOG3883|consensus	198		99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
KOG0075|consensus	186		99.86
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.85
KOG1673|consensus	205		99.85
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
PRK00089	292	era GTPase Era; Reviewed	99.85
CHL00189	742	infB translation initiation factor 2; Provisional	99.85
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.84
PRK05306	787	infB translation initiation factor IF-2; Validated	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.83
COG1159	298	Era GTPase [General function prediction only]	99.83
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.82
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.82
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
PRK05433	600	GTP-binding protein LepA; Provisional	99.82
COG0486	454	ThdF Predicted GTPase [General function prediction	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.8
KOG0076|consensus	197		99.8
KOG1489|consensus	366		99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.8
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.79
COG2262	411	HflX GTPases [General function prediction only]	99.79
KOG4423|consensus	229		99.79
COG1163	365	DRG Predicted GTPase [General function prediction	99.79
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.79
PRK12317	425	elongation factor 1-alpha; Reviewed	99.79
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.79
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.79
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.78
COG0218	200	Predicted GTPase [General function prediction only	99.78
KOG0074|consensus	185		99.78
PRK10218	607	GTP-binding protein; Provisional	99.78
KOG1423|consensus	379		99.77
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.77
COG2229	187	Predicted GTPase [General function prediction only	99.77
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.77
KOG0072|consensus	182		99.76
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.76
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.76
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.75
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.75
PRK04004	586	translation initiation factor IF-2; Validated	99.75
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.75
KOG1707|consensus	625		99.74
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.74
PRK12736	394	elongation factor Tu; Reviewed	99.73
PRK12735	396	elongation factor Tu; Reviewed	99.73
COG1084	346	Predicted GTPase [General function prediction only	99.73
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.73
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.72
COG0536	369	Obg Predicted GTPase [General function prediction	99.72
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.7
PRK09602	396	translation-associated GTPase; Reviewed	99.69
CHL00071	409	tufA elongation factor Tu	99.69
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.69
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.69
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.68
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.66
PRK00049	396	elongation factor Tu; Reviewed	99.66
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.66
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.65
PLN03126	478	Elongation factor Tu; Provisional	99.65
PLN00043	447	elongation factor 1-alpha; Provisional	99.65
COG3596	296	Predicted GTPase [General function prediction only	99.65
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.65
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.64
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.64
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.64
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.63
KOG0462|consensus	650		99.62
KOG0077|consensus	193		99.62
PTZ00141	446	elongation factor 1- alpha; Provisional	99.61
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.61
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.61
PLN03127	447	Elongation factor Tu; Provisional	99.61
KOG1191|consensus	531		99.6
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.6
PRK13351	687	elongation factor G; Reviewed	99.6
KOG1532|consensus	366		99.58
PTZ00258	390	GTP-binding protein; Provisional	99.58
KOG1145|consensus	683		99.57
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.57
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.56
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.55
KOG1490|consensus	620		99.55
PRK12739	691	elongation factor G; Reviewed	99.54
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.54
PRK09866	741	hypothetical protein; Provisional	99.53
KOG3905|consensus	473		99.53
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.52
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.52
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.52
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.52
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.52
PRK09601	364	GTP-binding protein YchF; Reviewed	99.5
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.48
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.47
PRK00007	693	elongation factor G; Reviewed	99.47
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.47
KOG0090|consensus	238		99.47
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.47
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.46
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.45
PRK12740	668	elongation factor G; Reviewed	99.43
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.42
PRK14845	1049	translation initiation factor IF-2; Provisional	99.41
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.41
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.4
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.39
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.39
KOG1486|consensus	364		99.38
KOG1144|consensus	1064		99.38
KOG1707|consensus	625		99.37
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.36
PRK13768	253	GTPase; Provisional	99.36
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.33
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.32
KOG0458|consensus	603		99.31
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.29
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.29
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.28
KOG0410|consensus	410		99.28
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.28
PRK07560	731	elongation factor EF-2; Reviewed	99.27
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.26
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.26
PTZ00416	836	elongation factor 2; Provisional	99.26
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.25
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.24
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.23
KOG1487|consensus	358		99.2
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.18
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.18
KOG1491|consensus	391		99.1
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.08
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.07
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.07
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.05
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.04
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.02
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	99.02
KOG0461|consensus	522		98.98
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.91
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.91
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.9
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.89
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.89
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.83
KOG0468|consensus	971		98.82
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.81
KOG2655|consensus	366		98.81
KOG3886|consensus	295		98.81
KOG0082|consensus	354		98.8
KOG2486|consensus	320		98.78
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.78
KOG1954|consensus	532		98.77
KOG1547|consensus	336		98.77
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.76
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.75
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.74
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.74
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.71
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.71
COG1161	322	Predicted GTPases [General function prediction onl	98.7
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.66
PRK12289	352	GTPase RsgA; Reviewed	98.65
KOG0464|consensus	753		98.65
KOG0705|consensus	749		98.64
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.6
PRK00098	298	GTPase RsgA; Reviewed	98.59
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.59
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.58
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.57
PRK12288	347	GTPase RsgA; Reviewed	98.57
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.56
PRK12288	347	GTPase RsgA; Reviewed	98.54
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.54
KOG0448|consensus	749		98.52
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.51
PRK12289	352	GTPase RsgA; Reviewed	98.47
KOG3887|consensus	347		98.41
PRK13796	365	GTPase YqeH; Provisional	98.41
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.4
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.4
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.39
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.37
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.37
KOG1143|consensus	591		98.36
COG1162	301	Predicted GTPases [General function prediction onl	98.36
KOG1424|consensus	562		98.33
KOG4273|consensus	418		98.32
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.3
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.3
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.29
PRK10416	318	signal recognition particle-docking protein FtsY;	98.27
COG0523	323	Putative GTPases (G3E family) [General function pr	98.26
PRK14974	336	cell division protein FtsY; Provisional	98.24
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.23
PRK00098	298	GTPase RsgA; Reviewed	98.23
KOG0465|consensus	721		98.22
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.21
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.19
KOG0467|consensus	887		98.14
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.12
PRK13796	365	GTPase YqeH; Provisional	98.1
cd03112	158	CobW_like The function of this protein family is u	98.09
PRK01889	356	GTPase RsgA; Reviewed	98.08
cd03114	148	ArgK-like The function of this protein family is u	98.08
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.07
KOG2484|consensus	435		98.01
PRK13695	174	putative NTPase; Provisional	98.01
KOG0463|consensus	641		98.0
KOG0447|consensus	980		97.95
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.95
KOG2485|consensus	335		97.93
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.93
KOG0460|consensus	449		97.91
KOG3859|consensus	406		97.86
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.85
KOG1534|consensus	273		97.84
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.84
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.77
COG3523	1188	IcmF Type VI protein secretion system component Va	97.75
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.71
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.69
KOG0466|consensus	466		97.68
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.65
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.63
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.61
KOG3929|consensus	363		97.59
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.58
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.58
PRK08118	167	topology modulation protein; Reviewed	97.56
PRK07261	171	topology modulation protein; Provisional	97.55
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.5
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.49
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.48
KOG0085|consensus	359		97.48
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.44
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.44
PRK10867	433	signal recognition particle protein; Provisional	97.44
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.42
COG1162	301	Predicted GTPases [General function prediction onl	97.41
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.41
KOG0459|consensus	501		97.4
KOG2423|consensus	572		97.39
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.38
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.37
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.36
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.36
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	97.34
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.34
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.34
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.33
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.33
PRK01889	356	GTPase RsgA; Reviewed	97.33
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.32
PRK05480	209	uridine/cytidine kinase; Provisional	97.3
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.3
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.28
KOG1970|consensus	634		97.27
PRK06217	183	hypothetical protein; Validated	97.26
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.24
smart00382	148	AAA ATPases associated with a variety of cellular	97.23
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.21
PRK03839	180	putative kinase; Provisional	97.21
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.21
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.21
PRK14530	215	adenylate kinase; Provisional	97.2
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.19
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.19
PF00004	132	AAA: ATPase family associated with various cellula	97.19
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.18
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.18
PRK14738	206	gmk guanylate kinase; Provisional	97.17
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.17
KOG3347|consensus	176		97.16
TIGR00959	428	ffh signal recognition particle protein. This mode	97.15
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.14
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.13
PRK10646	153	ADP-binding protein; Provisional	97.13
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.13
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.12
PRK14737	186	gmk guanylate kinase; Provisional	97.12
PRK13949	169	shikimate kinase; Provisional	97.12
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.11
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.11
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.11
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.1
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.1
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.09
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.07
PRK08233	182	hypothetical protein; Provisional	97.07
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.06
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.06
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.06
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.06
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.06
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.06
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.05
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.05
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.04
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.04
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.03
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.02
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.02
PRK04040	188	adenylate kinase; Provisional	97.02
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.02
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.01
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.0
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.0
PRK14531	183	adenylate kinase; Provisional	97.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.99
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.99
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.99
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.99
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.99
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.98
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.98
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.98

>KOG0084|consensus

Probab=100.00  E-value=2.2e-38  Score=222.23  Aligned_cols=167  Identities=54%  Similarity=0.898  Sum_probs=156.0

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      .+.+.++.+||+++|.+|||||+|+.|+....+.+.+..|+|.++..+++.+++..+.+++|||+||++++.+...|+++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|||+++.++|.++..|+.++++                                                   +
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~---------------------------------------------------~  110 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDR---------------------------------------------------Y  110 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhh---------------------------------------------------h
Confidence            9999999999999999999966666644                                                   4


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ...++|.++|+||+|+.+.+.++.++.+.++.+++.+ ++++|||++.|+++.|..|..
T Consensus       111 ~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~  169 (205)
T KOG0084|consen  111 ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAK  169 (205)
T ss_pred             ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHH
Confidence            4457899999999999999999999999999999999 999999999999999998764

>KOG0078|consensus

Probab=100.00  E-value=6.7e-37  Score=217.87  Aligned_cols=170  Identities=48%  Similarity=0.868  Sum_probs=158.0

Q ss_pred             CCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625          2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY   81 (223)
Q Consensus         2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   81 (223)
                      +|+...++..+||+++|.+|||||+++.++..+.+...+..++|+++..+++.+++..+.+++|||.|++.++.+...|+
T Consensus         3 ~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy   82 (207)
T KOG0078|consen    3 AMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY   82 (207)
T ss_pred             ccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence            35556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      +++.++++|||+++..+++++..|                                                   +..+.
T Consensus        83 rgA~gi~LvyDitne~Sfeni~~W---------------------------------------------------~~~I~  111 (207)
T KOG0078|consen   83 RGAMGILLVYDITNEKSFENIRNW---------------------------------------------------IKNID  111 (207)
T ss_pred             hhcCeeEEEEEccchHHHHHHHHH---------------------------------------------------HHHHH
Confidence            999999999999999999999955                                                   45555


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .+....+|.++|+||+|+...+.+..++.++++.++|++|+++||++|.||++.|-.|++.
T Consensus       112 e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~  172 (207)
T KOG0078|consen  112 EHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARD  172 (207)
T ss_pred             hhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHH
Confidence            5555689999999999999999999999999999999999999999999999999988763

>KOG0080|consensus

Probab=100.00  E-value=1.7e-36  Score=205.38  Aligned_cols=171  Identities=46%  Similarity=0.765  Sum_probs=156.8

Q ss_pred             CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625          1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY   80 (223)
Q Consensus         1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   80 (223)
                      |+.+....+..+||+++|.+|+|||||+.++..+.+.+....++|.++..+.+.+++..+++.+|||+|+++|+.+...|
T Consensus         1 M~~~ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSy   80 (209)
T KOG0080|consen    1 MGDSSSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSY   80 (209)
T ss_pred             CCCCccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhH
Confidence            55566677889999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      ++++.++|+|||++..++|..+.-|+.++.-+..+                                             
T Consensus        81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn---------------------------------------------  115 (209)
T KOG0080|consen   81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN---------------------------------------------  115 (209)
T ss_pred             hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC---------------------------------------------
Confidence            99999999999999999999999777777554442                                             


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                           +++-.++|+||+|.++++.++.++...|++++++-|++|||++.+|++..|+.++.
T Consensus       116 -----~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feelve  171 (209)
T KOG0080|consen  116 -----PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVE  171 (209)
T ss_pred             -----ccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHH
Confidence                 24556889999999988999999999999999999999999999999999998875

>KOG0098|consensus

Probab=100.00  E-value=2.2e-36  Score=209.86  Aligned_cols=164  Identities=52%  Similarity=0.887  Sum_probs=153.1

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      .+.+.+|++++|..|||||+|+.+++...|.+.++.|+|.++..+.+.++++.+++++|||.|++.++++...|++++.+
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||+++.++|..+..|+++++.                                                   +...
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq---------------------------------------------------~~~~  110 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQ---------------------------------------------------HSNE  110 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHH---------------------------------------------------hcCC
Confidence            9999999999999999977776644                                                   3345


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +..+++++||+|+...+.++.++.+.|++++|+.++++||++++|++|.|.....
T Consensus       111 NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~  165 (216)
T KOG0098|consen  111 NMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAK  165 (216)
T ss_pred             CcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999999999987654

>KOG0092|consensus

Probab=100.00  E-value=9.4e-36  Score=208.26  Aligned_cols=162  Identities=49%  Similarity=0.810  Sum_probs=150.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|..+||||||+.|+..+.|.+...+++|-.+.++++.++...+++.+|||+|+++|+++-.+|+|+++++++
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            46899999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||+++.++|..++.|..++.+..                                                   ++++-
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~---------------------------------------------------~~~~v  112 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQA---------------------------------------------------SPNIV  112 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhC---------------------------------------------------CCCeE
Confidence            999999999999997777665533                                                   34667


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.+|+||+|+.+.+.+..++.+.++...|+.++++|||++.|++++|..|.+.
T Consensus       113 ialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~  165 (200)
T KOG0092|consen  113 IALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEK  165 (200)
T ss_pred             EEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHh
Confidence            78899999999999999999999999999999999999999999999999864

>KOG0087|consensus

Probab=100.00  E-value=1.2e-35  Score=210.59  Aligned_cols=167  Identities=80%  Similarity=1.213  Sum_probs=158.0

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      +.++++.+||.++|.+++|||-|+.+++.+++.....+++|.++.+.++.++++.+..++|||+|+++|+.+...|++++
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      .++++|||+++..+++.+.+|+++++++.+                                                  
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad--------------------------------------------------  117 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHAD--------------------------------------------------  117 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCC--------------------------------------------------
Confidence            999999999999999999988888877665                                                  


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       .++++++|+||+||...+.+..++.+.+++..+..++++||+...|+++.|+.++..
T Consensus       118 -~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~  174 (222)
T KOG0087|consen  118 -SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTE  174 (222)
T ss_pred             -CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHH
Confidence             378999999999999999999999999999999999999999999999999887653

>KOG0094|consensus

Probab=100.00  E-value=3.5e-35  Score=205.52  Aligned_cols=163  Identities=37%  Similarity=0.729  Sum_probs=150.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+|++++|..+||||||++++..+.+...|.+++|.++...++.+.+..+.+++|||+||++|+.+...|++++.++++
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||+++..+|+...+|++.+++..+.                                                  .+.-
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs--------------------------------------------------~~vi  130 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGS--------------------------------------------------DDVI  130 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCC--------------------------------------------------CceE
Confidence            99999999999999777766443221                                                  2467


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||.||.+.++++.++.+..+.++++.|+++||+.|+||+++|..|..+
T Consensus       131 I~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~  183 (221)
T KOG0094|consen  131 IFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAA  183 (221)
T ss_pred             EEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999999987654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=6e-35  Score=213.55  Aligned_cols=163  Identities=36%  Similarity=0.731  Sum_probs=146.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++.+||+++|.+|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+..+..++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999888877778888888778888888899999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||++++.+++.+..|++++..                                                   .. .+
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~---------------------------------------------------~~-~~  110 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDE---------------------------------------------------HA-PG  110 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CC
Confidence            999999999999999977666522                                                   22 36


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++|+||+|+...+.++.++++.++.+.++++++|||++|.|++++|++|++.
T Consensus       111 ~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~  165 (189)
T cd04121         111 VPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARI  165 (189)
T ss_pred             CCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            8999999999998878889999999999999999999999999999999999864

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.8e-34  Score=212.92  Aligned_cols=160  Identities=40%  Similarity=0.750  Sum_probs=143.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +.|+++|..|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+..+..++..++++++++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999998888899888888888888888999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++++++.+..|++.+                                                   ......+.|++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i---------------------------------------------------~~~~~~~~pii  109 (202)
T cd04120          81 DITKKETFDDLPKWMKMI---------------------------------------------------DKYASEDAELL  109 (202)
T ss_pred             ECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCcEE
Confidence            999999999998666544                                                   22223478999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+...+.+..++.++++.+. ++.+++|||++|.|++++|+++++.
T Consensus       110 lVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~  161 (202)
T cd04120         110 LVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD  161 (202)
T ss_pred             EEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            99999999877888888999998875 7899999999999999999999863

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0394|consensus

Probab=100.00  E-value=2e-34  Score=199.73  Aligned_cols=168  Identities=39%  Similarity=0.726  Sum_probs=152.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ....+||.++|.+|+|||||++++.+.++...+..+++-++.++.+.++++.+.+++|||+|+++|.++...+++++|.+
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||+.++.+++.+..|.+++...++                                               ...+..
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~-----------------------------------------------~~~Pe~  118 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQAS-----------------------------------------------PQDPET  118 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcC-----------------------------------------------CCCCCc
Confidence            999999999999999999998855433                                               123346


Q ss_pred             ceEEEeecccchhh--ccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRH--LRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      -|++|++||+|+.+  .+.++...+++|+... +++++++|||...||++.|+.+.+.
T Consensus       119 FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~  176 (210)
T KOG0394|consen  119 FPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARR  176 (210)
T ss_pred             ccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHH
Confidence            89999999999976  3789999999999876 5799999999999999999998764

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.4e-33  Score=205.42  Aligned_cols=161  Identities=32%  Similarity=0.541  Sum_probs=140.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      +..+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++++++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4578999999999999999999999999888888887555 456778889999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         89 LVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      +|||++++.+++.+ ..|...+                                                   .... .+
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~~  109 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEI---------------------------------------------------QEFC-PN  109 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHHC-CC
Confidence            99999999999997 6565544                                                   3322 26


Q ss_pred             ceEEEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCCC-HHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDSTN-VETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~  222 (223)
                      .|+++|+||+|+.+            .+.++.++.++++.+.++ +|++|||+++.| ++++|+.++++
T Consensus       110 ~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         110 TKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             CCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence            89999999999864            245888999999999996 899999999998 99999999875

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0093|consensus

Probab=100.00  E-value=4.8e-34  Score=190.67  Aligned_cols=166  Identities=39%  Similarity=0.780  Sum_probs=153.3

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      ++-.++.+|+.++|...+|||||+.++.+..+...+..+.|+++..+++.-..+++.+++|||.|++.++.+...+++++
T Consensus        15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga   94 (193)
T KOG0093|consen   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA   94 (193)
T ss_pred             cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence            34556788999999999999999999999999999999999999999887777889999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      .+++++||+++++++..++                                                   .|...+....
T Consensus        95 mgfiLmyDitNeeSf~svq---------------------------------------------------dw~tqIktys  123 (193)
T KOG0093|consen   95 MGFILMYDITNEESFNSVQ---------------------------------------------------DWITQIKTYS  123 (193)
T ss_pred             ceEEEEEecCCHHHHHHHH---------------------------------------------------HHHHHheeee
Confidence            9999999999999999999                                                   4455556666


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ..+.|+|+|+||||+.+++.++.+..+.++.++|+.++++|||.+.|++++|+.++.
T Consensus       124 w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~  180 (193)
T KOG0093|consen  124 WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD  180 (193)
T ss_pred             ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999999999999998865

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.9e-33  Score=201.66  Aligned_cols=161  Identities=52%  Similarity=0.858  Sum_probs=142.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..++++++++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999998888878888888777788888889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++.+++.+..|++.+                                                   ......+.|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~i  110 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDA---------------------------------------------------RNLTNPNTVI  110 (166)
T ss_pred             EECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeE
Confidence            9999999999998666544                                                   2222346899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.+.++.++.+.++...++++++|||+++.|++++|..+++.
T Consensus       111 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~  162 (166)
T cd04122         111 FLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKK  162 (166)
T ss_pred             EEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999998877888889999999999999999999999999999998753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.6e-33  Score=202.06  Aligned_cols=158  Identities=34%  Similarity=0.593  Sum_probs=138.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|+.++..++..++++++++++||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888889887655 455667888999999999999999999999999999999999


Q ss_pred             eCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         92 DIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        92 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      |++++++++.+ ..|+..+                                                   .... .+.|+
T Consensus        81 d~~~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~~~pi  108 (176)
T cd04133          81 SLISRASYENVLKKWVPEL---------------------------------------------------RHYA-PNVPI  108 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCCE
Confidence            99999999998 5565544                                                   3222 26899


Q ss_pred             EEeecccchhhcc----------CCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLR----------AVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.+          .++.++.+.++...++ .+++|||+++.|++++|+.+++.
T Consensus       109 ilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~  171 (176)
T cd04133         109 VLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKV  171 (176)
T ss_pred             EEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence            9999999996532          4788899999999998 59999999999999999999874

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0086|consensus

Probab=100.00  E-value=5.9e-34  Score=191.61  Aligned_cols=169  Identities=51%  Similarity=0.823  Sum_probs=155.5

Q ss_pred             CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625          3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR   82 (223)
Q Consensus         3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   82 (223)
                      |....+++.+|++++|+.|+|||+|++++..+++......+++.++..+.+.++++.+++++|||+|++.|+++.+.|++
T Consensus         1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR   80 (214)
T KOG0086|consen    1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR   80 (214)
T ss_pred             CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      ++.+.++|||+++.+++..+..|+.                                                   ....
T Consensus        81 GAAGAlLVYD~TsrdsfnaLtnWL~---------------------------------------------------DaR~  109 (214)
T KOG0086|consen   81 GAAGALLVYDITSRDSFNALTNWLT---------------------------------------------------DART  109 (214)
T ss_pred             cccceEEEEeccchhhHHHHHHHHH---------------------------------------------------HHHh
Confidence            9999999999999999999995555                                                   4455


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..++++.+++++||.|+.+.++++..+.-+|+.++.+.+.++|+++|+|+++.|-...+.
T Consensus       110 lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~t  169 (214)
T KOG0086|consen  110 LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART  169 (214)
T ss_pred             hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHH
Confidence            555688999999999999999999999999999999999999999999999999876653

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=6.4e-33  Score=200.07  Aligned_cols=163  Identities=52%  Similarity=0.893  Sum_probs=144.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ++.+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+..+...+++++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            35799999999999999999999999998888899888887777888888889999999999998888899999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      ++||++++.++..+..|+..+                                                   ......+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~  109 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNI---------------------------------------------------EEHASEDV  109 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHH---------------------------------------------------HHhCCCCC
Confidence            999999999999988665544                                                   33233478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++++.
T Consensus       110 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  163 (167)
T cd01867         110 ERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKD  163 (167)
T ss_pred             cEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999998767778888889999999999999999999999999999864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=6.9e-33  Score=201.35  Aligned_cols=158  Identities=28%  Similarity=0.515  Sum_probs=137.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.++.++..+.++.+..+ ...+.+++..+.+.+|||+|+..+..++..++++++++++||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            6899999999999999999999999888888886655 456778889999999999999999999999999999999999


Q ss_pred             eCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         92 DIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        92 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      |++++++++.+ ..|+..+                                                   .... .+.|+
T Consensus        81 dit~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~~~~i  108 (178)
T cd04131          81 DISRPETLDSVLKKWRGEI---------------------------------------------------QEFC-PNTKV  108 (178)
T ss_pred             ECCChhhHHHHHHHHHHHH---------------------------------------------------HHHC-CCCCE
Confidence            99999999996 6565544                                                   3322 26899


Q ss_pred             EEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCCC-HHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDSTN-VETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+            .+.++.++.++++.+.++ ++++|||+++++ ++++|+.++++
T Consensus       109 ilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         109 LLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             EEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence            99999999964            245888999999999997 799999999995 99999999874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1e-32  Score=197.76  Aligned_cols=160  Identities=43%  Similarity=0.776  Sum_probs=142.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+..+...+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888888888887778888888889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++++++.+..|++.+.                                                   .....+.|++
T Consensus        81 d~~~~~sf~~~~~~~~~~~---------------------------------------------------~~~~~~~~ii  109 (161)
T cd04117          81 DISSERSYQHIMKWVSDVD---------------------------------------------------EYAPEGVQKI  109 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHH---------------------------------------------------HhCCCCCeEE
Confidence            9999999999986666552                                                   2223468999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+.+.+..++...+++..++++++|||+++.|++++|.+|+++
T Consensus       110 lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         110 LIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            999999998877888899999999899999999999999999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.4e-32  Score=197.98  Aligned_cols=160  Identities=38%  Similarity=0.746  Sum_probs=140.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|+..+..++..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887777777777778889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |+++.++++.+..|+..+                                                   ........|++
T Consensus        82 d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~pii  110 (165)
T cd01865          82 DITNEESFNAVQDWSTQI---------------------------------------------------KTYSWDNAQVI  110 (165)
T ss_pred             ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCCEE
Confidence            999999999888666554                                                   22223368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+.+....++..+++...+++++++||+++.|++++|+++.+.
T Consensus       111 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865         111 LVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             EEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            999999998777777788888888889999999999999999999998763

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.2e-32  Score=202.91  Aligned_cols=164  Identities=37%  Similarity=0.686  Sum_probs=143.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      +||+++|.+|||||||++++.+..+...+.++.+.++....+.++ +..+.+.+||++|+..+..++..++++++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888998888877777777 7888999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++++++.+..|+..+....                                               ......++|+
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~-----------------------------------------------~~~~~~~~pi  113 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKV-----------------------------------------------TLPNGEPIPC  113 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-----------------------------------------------cccCCCCCcE
Confidence            99999999999998877664311                                               1111246899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+...+.+..++.+.++...+ ..++++||+++.|++++|++|++.
T Consensus       114 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~  166 (201)
T cd04107         114 LLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKN  166 (201)
T ss_pred             EEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999998666788889999999988 689999999999999999999864

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.6e-32  Score=196.52  Aligned_cols=162  Identities=87%  Similarity=1.269  Sum_probs=143.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.+|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            46899999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||++++.++..+..|+..+                                                   ......++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~p  110 (165)
T cd01868          82 VYDITKKQTFENVERWLKEL---------------------------------------------------RDHADSNIV  110 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCe
Confidence            99999999998888665554                                                   333333689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+...+....++...++...+++++++||+++.|++++|+++++.
T Consensus       111 i~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  163 (165)
T cd01868         111 IMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTE  163 (165)
T ss_pred             EEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999998777778888889988889999999999999999999999864

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0079|consensus

Probab=100.00  E-value=1.1e-33  Score=189.23  Aligned_cols=162  Identities=47%  Similarity=0.828  Sum_probs=151.2

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .+..++.+++|.+|+|||+|+.++..+.+...|..++|.++..+++.+++..+.+.+||++|++.|+.+...++++.+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||+++.++|.++.+|++++++.++                                                    .
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd----------------------------------------------------s  112 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNCD----------------------------------------------------S  112 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcCc----------------------------------------------------c
Confidence            999999999999999988887766544                                                    4


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      .|-++|+||+|.++.+.+..++.+.++.+.|+.++++||+.+.|++..|..|.+
T Consensus       113 v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~  166 (198)
T KOG0079|consen  113 VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK  166 (198)
T ss_pred             ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence            677999999999998899999999999999999999999999999999988764

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=3.7e-32  Score=197.30  Aligned_cols=160  Identities=27%  Similarity=0.498  Sum_probs=136.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|+..+..++..++++++++++|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999998888888876553 4566788889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         91 YDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        91 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      ||++++++++.+. .|...+                                                   .... .+.|
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i---------------------------------------------------~~~~-~~~p  107 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEI---------------------------------------------------THHC-PKTP  107 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCC
Confidence            9999999999986 354433                                                   2222 3689


Q ss_pred             EEEeecccchhhc------------cCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        170 IMLVGNKSDLRHL------------RAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       170 ~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      +++|+||+|+.+.            +.+..++.++++.+.+ +.+++|||++|.|++++|+.++.+|
T Consensus       108 iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         108 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            9999999998653            4677788888888887 6899999999999999999999865

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=4.2e-32  Score=195.62  Aligned_cols=161  Identities=52%  Similarity=0.849  Sum_probs=142.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..++++++++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999988888788888788777787888888999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||.++++++..+..|+..+..                                                   ....+.|+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~---------------------------------------------------~~~~~~~~  110 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDR---------------------------------------------------YASENVNK  110 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHH---------------------------------------------------hCCCCCcE
Confidence            999999999999866665522                                                   22236899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++++||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus       111 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~  162 (166)
T cd01869         111 LLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMARE  162 (166)
T ss_pred             EEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHH
Confidence            9999999998777778888999999999999999999999999999999864

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=4.5e-32  Score=203.40  Aligned_cols=162  Identities=23%  Similarity=0.454  Sum_probs=139.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ....+||+++|.+|||||||++++..+.+...+.++++..+ ...+.+++..+.+.+|||+|++.+..+...++++++++
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v   88 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV   88 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence            34578999999999999999999999999988889987666 44577888999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         88 LLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        88 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      ++|||++++++++.+ ..|+.++                                                   .... .
T Consensus        89 IlVyDit~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~  116 (232)
T cd04174          89 LLCFDISRPETVDSALKKWKAEI---------------------------------------------------MDYC-P  116 (232)
T ss_pred             EEEEECCChHHHHHHHHHHHHHH---------------------------------------------------HHhC-C
Confidence            999999999999985 6665554                                                   2222 2


Q ss_pred             CceEEEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCC-CHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDST-NVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~~~~~i~~~  222 (223)
                      +.|+++|+||+|+..            .+.++.++.++++.+.++ .|++|||++++ |++++|..++..
T Consensus       117 ~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~  186 (232)
T cd04174         117 STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL  186 (232)
T ss_pred             CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence            679999999999864            256888999999999998 69999999998 899999998754

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=3.6e-32  Score=196.86  Aligned_cols=161  Identities=27%  Similarity=0.495  Sum_probs=139.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|+..+..++..++++++++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999999877778876444 44566788888999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++.++..+..|...+.+.                                                  ....++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~--------------------------------------------------~~~~~~pi  110 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRV--------------------------------------------------RLTEDIPL  110 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCE
Confidence            9999999999998665544221                                                  11236899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.+.++.++.+.++...++++++|||+++.|++++|+++++.
T Consensus       111 ilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  162 (172)
T cd04141         111 VLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVRE  162 (172)
T ss_pred             EEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHH
Confidence            9999999998777888889999999999999999999999999999999853

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.7e-32  Score=198.46  Aligned_cols=164  Identities=40%  Similarity=0.751  Sum_probs=141.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc----------CeEEEEEEEeCCCCccccccch
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD----------QKTIKAQIWDTAGQERYRAITS   78 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~G~~~~~~~~~   78 (223)
                      ++.+||+++|++|||||||++++.+..+...+.++++.++....+.+.          +..+.+.+||++|+..+..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999999988888888877766666553          3568899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625         79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR  158 (223)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  158 (223)
                      .+++++|++++|||+++++++..+..|+..+...                                              
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~----------------------------------------------  115 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTH----------------------------------------------  115 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------------------------------
Confidence            9999999999999999999999998766655221                                              


Q ss_pred             HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                          ....+.|+++|+||+|+.+.+.+..++...++.+.+++++++||+++.|++++|++|++.
T Consensus       116 ----~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~  175 (180)
T cd04127         116 ----AYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDL  175 (180)
T ss_pred             ----cCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence                112368999999999998877788888999999999999999999999999999999864

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=4.3e-32  Score=195.92  Aligned_cols=163  Identities=52%  Similarity=0.864  Sum_probs=144.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ++.+||+++|.+|||||||++++.+..+...+.++.+.+.....+..++....+.+||++|+..+..+...+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            56799999999999999999999999988888888888888888888888889999999999988888889999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|||++++.++..+..|+..+                                                   ......+.
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~  110 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDA---------------------------------------------------RQHSNSNM  110 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCC
Confidence            999999999999988665554                                                   33223478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||.|+.+.+.+..++.+.++.+.++.++++||+++.|++++|.++++.
T Consensus       111 pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~  164 (168)
T cd01866         111 TIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKE  164 (168)
T ss_pred             cEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999998766778888989999999999999999999999999998764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=6.3e-32  Score=202.26  Aligned_cols=166  Identities=77%  Similarity=1.181  Sum_probs=146.9

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      .+.++.+||+++|++|||||||+++|.+..+...+.++++.++....+.+++..+.+.+||++|+..+..+...++++++
T Consensus         7 ~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~   86 (216)
T PLN03110          7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV   86 (216)
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence            34557799999999999999999999999988788889888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||++++.+++.+..|+..+                                                   .....
T Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~  115 (216)
T PLN03110         87 GALLVYDITKRQTFDNVQRWLREL---------------------------------------------------RDHAD  115 (216)
T ss_pred             EEEEEEECCChHHHHHHHHHHHHH---------------------------------------------------HHhCC
Confidence            999999999999999988665544                                                   33333


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .+.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.
T Consensus       116 ~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~  172 (216)
T PLN03110        116 SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLE  172 (216)
T ss_pred             CCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            478999999999998777788888999999899999999999999999999999753

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=5e-32  Score=203.06  Aligned_cols=160  Identities=36%  Similarity=0.614  Sum_probs=138.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...+||+++|.+|||||||++++..+.+...+.++++.++....+..++..+.+.+||++|+..+..++..+++++++++
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67899999999999999999999999998888899988888877777778899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|||+++..+++.+..|++.+..                                                   .. .+.
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~---------------------------------------------------~~-~~~  118 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCR---------------------------------------------------VC-ENI  118 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCC
Confidence            99999999999999877665532                                                   11 368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+ +.+..++. .++...++++++|||+++.|++++|++|++.
T Consensus       119 piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~  170 (219)
T PLN03071        119 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (219)
T ss_pred             cEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            9999999999965 34444555 6777788999999999999999999999864

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=4.3e-32  Score=199.62  Aligned_cols=159  Identities=33%  Similarity=0.567  Sum_probs=136.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|+..+..++..+++++|++++|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999888888887554 44556788889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         91 YDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        91 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      ||++++.+++.+. .|...+                                                   .... .+.|
T Consensus        82 ydit~~~Sf~~~~~~w~~~i---------------------------------------------------~~~~-~~~p  109 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEV---------------------------------------------------CHHC-PNVP  109 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHH---------------------------------------------------HhhC-CCCC
Confidence            9999999999996 354433                                                   2222 3689


Q ss_pred             EEEeecccchhhc------------cCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHL------------RAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.            +.+..++.+.++.+.+ +++++|||+++.|++++|+++++.
T Consensus       110 iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~  175 (191)
T cd01875         110 ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRA  175 (191)
T ss_pred             EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence            9999999999653            2366778899999888 589999999999999999999864

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=5.7e-32  Score=195.06  Aligned_cols=165  Identities=31%  Similarity=0.652  Sum_probs=143.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++++..+...+.++.+.++....+..++..+.+.+||++|+..+..++..++++++++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899888888888888888999999999999989899999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.++++++..+..|+.++.+....                                              .....+.|++
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~pii  114 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGP----------------------------------------------HGNMENIVVV  114 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccc----------------------------------------------cccCCCceEE
Confidence            999999999998777766442211                                              0012368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+.+....++.+.++...+++++++||+++.|++++|++|++.
T Consensus       115 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  165 (168)
T cd04119         115 VCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSS  165 (168)
T ss_pred             EEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            999999997656677888888888889999999999999999999999864

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=7.9e-32  Score=193.41  Aligned_cols=159  Identities=36%  Similarity=0.721  Sum_probs=145.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|.+|||||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|+..+..++..+++++++++++||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998889989999999999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      ++++++++.+..|+..+                                                   ......+.|+++
T Consensus        81 ~~~~~S~~~~~~~~~~i---------------------------------------------------~~~~~~~~~iiv  109 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEI---------------------------------------------------QKYKPEDIPIIV  109 (162)
T ss_dssp             TTBHHHHHTHHHHHHHH---------------------------------------------------HHHSTTTSEEEE
T ss_pred             ccccccccccccccccc---------------------------------------------------ccccccccccee
Confidence            99999999999666555                                                   333334689999


Q ss_pred             eecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++||+|+.+.+.++.+++++++.+++.+++++||+++.|+.++|..+++.
T Consensus       110 vg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen  110 VGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             EEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             eeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999888999999999999999999999999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1e-31  Score=193.44  Aligned_cols=163  Identities=46%  Similarity=0.821  Sum_probs=141.7

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ++.+||+++|++|+|||||++++....+...+.++.+.++....+..++..+.+.+||+||+..+......+++.+|+++
T Consensus         1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            35799999999999999999999999888888788877887778888888889999999999989888899999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      ++||.+++.+++.+..|++.+                                                   ......++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~  109 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEV---------------------------------------------------EKYGASNV  109 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHH---------------------------------------------------HHhCCCCC
Confidence            999999999999888666655                                                   22233478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.+....++...++...+. .++++||+++.|++++|+++.+.
T Consensus       110 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         110 VLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999987777778888888888875 68999999999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.3e-31  Score=198.45  Aligned_cols=163  Identities=46%  Similarity=0.800  Sum_probs=143.1

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++.+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..++++++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            34679999999999999999999999988877888888888777888888888999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||++++++++.+..|+..+..                                                   .. ..
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~-~~  110 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQ---------------------------------------------------NC-DD  110 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CC
Confidence            999999999999999866665522                                                   11 25


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus       111 ~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~  165 (199)
T cd04110         111 VCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITEL  165 (199)
T ss_pred             CCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHH
Confidence            7999999999998766777888888988889999999999999999999998764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=9.8e-32  Score=201.30  Aligned_cols=163  Identities=33%  Similarity=0.589  Sum_probs=142.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC-eEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-KTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      +||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||++|+..+..+...+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888889998888887777754 578999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++++++.+..|+..+.+...                                                ....+.|+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~------------------------------------------------~~~~~~pi  112 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLK------------------------------------------------SSETQPLV  112 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcc------------------------------------------------ccCCCceE
Confidence            999999999999977776644211                                                11235789


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++|++.
T Consensus       113 ilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~  164 (215)
T cd04109         113 VLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAE  164 (215)
T ss_pred             EEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999998777788889999999999999999999999999999999763

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=9.6e-32  Score=193.08  Aligned_cols=160  Identities=31%  Similarity=0.529  Sum_probs=136.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+||++|+..+..++..++++++++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777767765 444566777888889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++.+++.+..|++.+...                                                  ....++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pii  110 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRV--------------------------------------------------KDTENVPMV  110 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCEE
Confidence            999999999998776655331                                                  112368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+.+.+..++...++...+.+++++||+++.|++++|+++++.
T Consensus       111 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04136         111 LVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQ  161 (163)
T ss_pred             EEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence            999999997666677777888888888999999999999999999999864

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0095|consensus

Probab=100.00  E-value=1.8e-32  Score=183.81  Aligned_cols=163  Identities=44%  Similarity=0.814  Sum_probs=149.2

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      .++..+||+++|..|+|||+|+++++.+-+++....++|.++-.+++.+++..+++++|||+|+++++++...|++.+|+
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            45667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||++...+|+-++.|+++++.+..                                                   .
T Consensus        83 lilvydiscqpsfdclpewlreie~yan---------------------------------------------------~  111 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPEWLREIEQYAN---------------------------------------------------N  111 (213)
T ss_pred             EEEEEecccCcchhhhHHHHHHHHHHhh---------------------------------------------------c
Confidence            9999999999999999977776655433                                                   4


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL  220 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  220 (223)
                      ++--|+|+||+|+.+.+++..+..+++......-++++||+...|++.+|..+.
T Consensus       112 kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a  165 (213)
T KOG0095|consen  112 KVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             ceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence            556689999999999889999889999988777799999999999999998775

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=1.4e-31  Score=191.90  Aligned_cols=160  Identities=54%  Similarity=0.857  Sum_probs=141.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..++++++++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888889999999999999888999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.+++.++..+..|+..+                                                   ......++|++
T Consensus        81 d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~ii  109 (161)
T cd04113          81 DITNRTSFEALPTWLSDA---------------------------------------------------RALASPNIVVI  109 (161)
T ss_pred             ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeEE
Confidence            999999998888665544                                                   33333478999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++||+|+.+.+.+..++...++...++.++++||+++.|++++|+++++.
T Consensus       110 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         110 LVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             EEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            999999998777788889999999999999999999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.7e-31  Score=192.29  Aligned_cols=163  Identities=31%  Similarity=0.464  Sum_probs=137.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.+..+...+.++.+..+ ......+...+.+.+||++|+..+..++..+++.++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7899999999999999999999988777777665444 445556777889999999999999988899999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |+++.++++.+..|++.+.+.                                                ......++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~------------------------------------------------~~~~~~~~pii  112 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEI------------------------------------------------KGNNIEKIPIM  112 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHH------------------------------------------------hcCCCCCCCEE
Confidence            999999999998776655331                                                11122478999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      +|+||+|+.+.+.+..++...++...++++++|||++|.|++++|++|+.++
T Consensus       113 lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~~  164 (165)
T cd04140         113 LVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNLE  164 (165)
T ss_pred             EEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhcc
Confidence            9999999987677777788888888889999999999999999999998753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.7e-31  Score=191.64  Aligned_cols=159  Identities=35%  Similarity=0.644  Sum_probs=139.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc--CeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD--QKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +||+++|.+|+|||||+++++++.+...+.++.+.++....+.+.  +..+.+.+||+||+..+..++..++++++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            489999999999999999999998888888888888777767676  777899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||.++++++..+..|+..+..                                                   .. .++|
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~---------------------------------------------------~~-~~~p  108 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEA---------------------------------------------------EC-GDIP  108 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCCC
Confidence            9999999999888866554422                                                   11 3689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+...+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus       109 ~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         109 MVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             EEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999998767778888899999999999999999999999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.6e-31  Score=192.17  Aligned_cols=161  Identities=29%  Similarity=0.515  Sum_probs=137.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      ++||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|+..+..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998887777767765444 45666788888999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||+++..+++.+..|+..+.+.                                                  ....+.|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pi  109 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRV--------------------------------------------------KDTEDVPM  109 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCE
Confidence            9999999999998776655221                                                  11247899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++++||+|+.+.+.+..++...++++.+++++++||+++.|++++|+++++.
T Consensus       110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~  161 (164)
T cd04175         110 ILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQ  161 (164)
T ss_pred             EEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence            9999999998766677777888888889999999999999999999999863

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.7e-31  Score=194.76  Aligned_cols=159  Identities=28%  Similarity=0.524  Sum_probs=135.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|+..+..++..++++++++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899988888888888888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++.+++.+..|++.+..                                                   ......| +
T Consensus        81 D~t~~~s~~~i~~~~~~~~~---------------------------------------------------~~~~~~p-i  108 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARG---------------------------------------------------FNKTAIP-I  108 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHH---------------------------------------------------hCCCCCE-E
Confidence            99999999999877665522                                                   2223567 5


Q ss_pred             Eeecccchhh-----ccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRH-----LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+..     .+....++.++++...++++++|||+++.|++++|+++.+.
T Consensus       109 lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~  164 (182)
T cd04128         109 LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAK  164 (182)
T ss_pred             EEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            7899999852     11223456778888889999999999999999999998753

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=2e-31  Score=195.85  Aligned_cols=160  Identities=49%  Similarity=0.827  Sum_probs=141.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988778888888887778888888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.++++++..+..|+..+.                                                   .......|++
T Consensus        81 d~~~~~s~~~i~~~~~~i~---------------------------------------------------~~~~~~~~~i  109 (188)
T cd04125          81 DVTDQESFENLKFWINEIN---------------------------------------------------RYARENVIKV  109 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHH---------------------------------------------------HhCCCCCeEE
Confidence            9999999999986666553                                                   2223358999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.
T Consensus       110 vv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125         110 IVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             EEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999998777778888888888889999999999999999999998864

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=2.6e-31  Score=191.99  Aligned_cols=161  Identities=32%  Similarity=0.616  Sum_probs=137.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|+..+..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988888998888877788888888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      .++++++..+..|+..+.+                                                  ...+...|+++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~iil  111 (170)
T cd04108          82 LTDVASLEHTRQWLEDALK--------------------------------------------------ENDPSSVLLFL  111 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHH--------------------------------------------------hcCCCCCeEEE
Confidence            9999999998866655422                                                  12223578999


Q ss_pred             eecccchhhccC--CChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        173 VGNKSDLRHLRA--VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       173 v~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      |+||+|+.+.+.  ...++...++.+.+.+++++||+++.|++++|+.|++++
T Consensus       112 VgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~  164 (170)
T cd04108         112 VGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT  164 (170)
T ss_pred             EEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            999999865333  345667778888889999999999999999999998753

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3.5e-31  Score=194.64  Aligned_cols=162  Identities=33%  Similarity=0.538  Sum_probs=139.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||+|+.++..++..++++++++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            468999999999999999999999988777777776555 5566788888899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||++++++++.+..|.+.+.+.                                                  ....+.|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~p  112 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRV--------------------------------------------------KDKDRVP  112 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCC
Confidence            99999999999998776655221                                                  1123789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus       113 iiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~  165 (189)
T PTZ00369        113 MILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVRE  165 (189)
T ss_pred             EEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence            99999999997766777778888888888999999999999999999999763

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=5.3e-31  Score=190.59  Aligned_cols=166  Identities=38%  Similarity=0.699  Sum_probs=142.7

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      +..+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++++++++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            46799999999999999999999999988877788877777777788889999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|||+++.++++.+..|..++.....                                               .....+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~  115 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYAD-----------------------------------------------VKEPESF  115 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcc-----------------------------------------------cccCCCC
Confidence            99999999999999988776633211                                               1112468


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+. .+.+..++.++++.+.+. +++++||+++.|+.++|+++++.
T Consensus       116 piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         116 PFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             cEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            999999999987 456778889999988874 79999999999999999999863

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2.5e-31  Score=195.75  Aligned_cols=160  Identities=44%  Similarity=0.780  Sum_probs=137.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      +||+++|.+|||||||++++.+..+.. .+.++.+.++....+.+++..+.+.+||+||+..+...+..++++++++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988754 4567777677666677888889999999999999988888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      +|+++.++++.+..|+..+                                                   ......++|+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~pi  109 (191)
T cd04112          81 YDITNKASFDNIRAWLTEI---------------------------------------------------KEYAQEDVVI  109 (191)
T ss_pred             EECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCcE
Confidence            9999999999888665544                                                   3333347899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+...+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus       110 iiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~  161 (191)
T cd04112         110 MLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKE  161 (191)
T ss_pred             EEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999997767777888889999999999999999999999999999864

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=4.1e-31  Score=197.13  Aligned_cols=164  Identities=53%  Similarity=0.887  Sum_probs=144.3

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++.+||+|+|++|||||||++++.+..+...+.++++.++....+.+++..+.+.+||++|+..+..++..+++++|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34679999999999999999999999988888888888888787888888888999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||.+++.++..+..|+..+                                                   ......+
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~---------------------------------------------------~~~~~~~  111 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDA---------------------------------------------------RQHANAN  111 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHH---------------------------------------------------HHhcCCC
Confidence            9999999999999888665544                                                   2222347


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++++||+|+.+.+.++.++.++++.+++++++++||+++.|++++|+++++.
T Consensus       112 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~  166 (210)
T PLN03108        112 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAK  166 (210)
T ss_pred             CcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999998877788889999999999999999999999999999998753

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2.7e-31  Score=195.40  Aligned_cols=161  Identities=36%  Similarity=0.557  Sum_probs=137.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|+..+..++..+++++|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999988777777776444 4455677888899999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      +++.++++.+..|++.+.....                                                ....+.|+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~------------------------------------------------~~~~~~piil  111 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKD------------------------------------------------ESAADVPIMI  111 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc------------------------------------------------ccCCCCCEEE
Confidence            9999999999977776643211                                                1124689999


Q ss_pred             eecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+||+|+...+.+...+...++...+++++++||+++.|++++|+++++.
T Consensus       112 vgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~  161 (190)
T cd04144         112 VGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA  161 (190)
T ss_pred             EEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            99999998767778888888888889999999999999999999999864

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.98  E-value=7.1e-31  Score=189.09  Aligned_cols=156  Identities=36%  Similarity=0.667  Sum_probs=132.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+..+..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887778888888877777777788899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |+++.+++..+..|+..+.+                                                   ... ++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~~-~~pii  108 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVR---------------------------------------------------VCG-NIPIV  108 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHH---------------------------------------------------hCC-CCcEE
Confidence            99999999999866655532                                                   222 78999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +|+||+|+.+ +... .+..++....+++++++||++++|++++|++|++
T Consensus       109 iv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877         109 LCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             EEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence            9999999974 3333 3445666677889999999999999999999985

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04111 Rab39 Rab39 subfamily

Probab=99.98  E-value=7.1e-31  Score=195.81  Aligned_cols=162  Identities=46%  Similarity=0.767  Sum_probs=141.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      .+||+++|.+|||||||++++.+..+...+.++++.++....+.+ ++..+.+.+||++|+..+..+...++++++++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            489999999999999999999999988888888888887777776 4667899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||++++++++.+..|+..+...                                                  ......|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~--------------------------------------------------~~~~~~~  111 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSH--------------------------------------------------IQPHRPV  111 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCe
Confidence            99999999999998766655221                                                  1123578


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus       112 iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  164 (211)
T cd04111         112 FILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQE  164 (211)
T ss_pred             EEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999998777888889999999999999999999999999999999864

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0091|consensus

Probab=99.98  E-value=7.5e-32  Score=183.36  Aligned_cols=166  Identities=46%  Similarity=0.786  Sum_probs=149.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      -++-++.+++|.+-+|||+|++.++.+++++-.+|++|.++....+.+ ++..+++++|||+|++.++++...|+++.-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            456789999999999999999999999999999999999998887776 5788999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||.++..+|+.++.|..+..-+                                                 ...+.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~-------------------------------------------------~q~P~  115 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMA-------------------------------------------------TQGPD  115 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHh-------------------------------------------------cCCCC
Confidence            99999999999999999887765221                                                 11234


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++-+++|++|+|+...++++.++.+.++..+|..|+++||+++.|+++.|..|.+.
T Consensus       116 k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqe  171 (213)
T KOG0091|consen  116 KVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQE  171 (213)
T ss_pred             eeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHH
Confidence            56678999999999999999999999999999999999999999999999888764

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.98  E-value=9.2e-31  Score=189.80  Aligned_cols=158  Identities=32%  Similarity=0.524  Sum_probs=133.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|+..+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            69999999999999999999999888888787753 33445667888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         92 DIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      |+++++++..+. .|...+                                                   .... .+.|+
T Consensus        81 d~~~~~sf~~~~~~~~~~~---------------------------------------------------~~~~-~~~pi  108 (174)
T cd01871          81 SLVSPASFENVRAKWYPEV---------------------------------------------------RHHC-PNTPI  108 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCCE
Confidence            999999999985 344433                                                   2222 36899


Q ss_pred             EEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.            +.++.++...++.+.+. ++++|||++|.|++++|+.+++.
T Consensus       109 ilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         109 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             EEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            999999999642            24778888999998885 89999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01861 Rab6 Rab6 subfamily

Probab=99.98  E-value=1e-30  Score=187.37  Aligned_cols=160  Identities=38%  Similarity=0.755  Sum_probs=140.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888889999999999999998999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.++++++..+..|+..+                                                   ......+.|++
T Consensus        81 d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~ii  109 (161)
T cd01861          81 DITNRQSFDNTDKWIDDV---------------------------------------------------RDERGNDVIIV  109 (161)
T ss_pred             ECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCEEE
Confidence            999999998888665544                                                   22222368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++||+|+.+.+....++...++...+++++++||+++.|++++|+++.+.
T Consensus       110 lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         110 LVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             EEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            999999997666777788888888889999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.98  E-value=1.1e-30  Score=187.72  Aligned_cols=160  Identities=63%  Similarity=0.993  Sum_probs=140.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++.+..+.....++.+.++....+..++..+.+.+||+||+..+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777788888887778888888889999999999988889999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.+++.+++.+..|+..+                                                   ......++|++
T Consensus        81 d~~~~~s~~~~~~~l~~~---------------------------------------------------~~~~~~~~piv  109 (164)
T smart00175       81 DITNRESFENLKNWLKEL---------------------------------------------------REYADPNVVIM  109 (164)
T ss_pred             ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeEE
Confidence            999999998888555544                                                   33333479999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++||+|+.+.+....++.+.++.+.+++++++|++++.|++++|++|.+.
T Consensus       110 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175      110 LVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             EEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999998767778888888998899999999999999999999998763

Rab GTPases are implicated in vesicle trafficking.

>cd04176 Rap2 Rap2 subgroup

Probab=99.98  E-value=1e-30  Score=187.85  Aligned_cols=161  Identities=32%  Similarity=0.523  Sum_probs=136.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+||++|+..+..++..++++++++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999988877767654 45556777788888999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++.++..+..|+..+.+.                                                  ....++|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~pi  109 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRV--------------------------------------------------KGYEKVPI  109 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCE
Confidence            9999999999998776655321                                                  11247899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.+.+...+...++...+++++++||+++.|+.++|+++++.
T Consensus       110 viv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04176         110 ILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQ  161 (163)
T ss_pred             EEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHh
Confidence            9999999997766667777788888888999999999999999999999863

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.98  E-value=6.7e-31  Score=196.10  Aligned_cols=158  Identities=27%  Similarity=0.494  Sum_probs=134.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+|+|.+|||||||++++....++..+.|+++..+. ..+.+++..+.+.+|||+|+..+..++..+++++|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            69999999999999999999999998888898876653 56778889999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHH-HHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         92 DIAKHLTYENVER-WLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        92 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      |++++++++.+.. |...                                                   +.... .+.|+
T Consensus        81 dis~~~Sf~~i~~~w~~~---------------------------------------------------~~~~~-~~~pi  108 (222)
T cd04173          81 DISRPETLDSVLKKWQGE---------------------------------------------------TQEFC-PNAKV  108 (222)
T ss_pred             ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhhC-CCCCE
Confidence            9999999999853 3332                                                   22222 36899


Q ss_pred             EEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCC-HHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTN-VETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.            ..++.++...++.+.++ .|++|||+++.+ ++++|+.++.+
T Consensus       109 iLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~  174 (222)
T cd04173         109 VLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA  174 (222)
T ss_pred             EEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence            999999999642            13677899999999996 899999999885 99999998765

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04126 Rab20 Rab20 subfamily

Probab=99.98  E-value=7.2e-31  Score=195.84  Aligned_cols=155  Identities=37%  Similarity=0.595  Sum_probs=130.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++..+.+.. ..++++.++....    ...+.+.+||++|+..+..++..++++++++++||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 4566665554332    24578999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++++++.+..|+..+                                                   ......+.|++
T Consensus        76 Dvt~~~Sf~~l~~~~~~l---------------------------------------------------~~~~~~~~piI  104 (220)
T cd04126          76 DVSNVQSLEELEDRFLGL---------------------------------------------------TDTANEDCLFA  104 (220)
T ss_pred             ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCCCcEE
Confidence            999999999998655544                                                   22223468999


Q ss_pred             Eeecccchhh-------------------ccCCChHHHHHHHHHcC--------------CeEEEeecCCCCCHHHHHHH
Q psy15625        172 LVGNKSDLRH-------------------LRAVPADEAKTFAERNN--------------LSFIETSALDSTNVETAFQN  218 (223)
Q Consensus       172 vv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~~~~~  218 (223)
                      +|+||+|+.+                   .+.++.++.+.++.+.+              +++++|||++|+|++++|+.
T Consensus       105 lVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~  184 (220)
T cd04126         105 VVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEY  184 (220)
T ss_pred             EEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHH
Confidence            9999999975                   57788899999999876              67999999999999999999


Q ss_pred             HHhh
Q psy15625        219 ILTA  222 (223)
Q Consensus       219 i~~~  222 (223)
                      +++.
T Consensus       185 i~~~  188 (220)
T cd04126         185 LFNL  188 (220)
T ss_pred             HHHH
Confidence            9864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.98  E-value=1.6e-30  Score=186.90  Aligned_cols=162  Identities=33%  Similarity=0.566  Sum_probs=136.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||+.++..++..++++++++++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            358999999999999999999999887666666655333 4455678888899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||+++..+++.+..|.+.+.+.                                                  ....+.|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~p  109 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRV--------------------------------------------------KDRDEFP  109 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHH--------------------------------------------------hCCCCCC
Confidence            99999999999998776655321                                                  1123689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++||+|+...+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus       110 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  162 (164)
T cd04145         110 MILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRV  162 (164)
T ss_pred             EEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHh
Confidence            99999999998766677778888888889999999999999999999999864

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.98  E-value=2e-30  Score=186.24  Aligned_cols=161  Identities=48%  Similarity=0.835  Sum_probs=141.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998876778877778788888899999999999999988888888999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      +|.++++++.....|++.+                                                   ......+.|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~i  109 (163)
T cd01860          81 YDITSEESFEKAKSWVKEL---------------------------------------------------QRNASPNIII  109 (163)
T ss_pred             EECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeE
Confidence            9999999998888665544                                                   3333347899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++++||+|+...+....++...+....+++++++||+++.|+.++|++|++.
T Consensus       110 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd01860         110 ALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK  161 (163)
T ss_pred             EEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999998666777888888888889999999999999999999999864

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=1.3e-30  Score=187.37  Aligned_cols=159  Identities=34%  Similarity=0.577  Sum_probs=134.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++.+..+...+.++.+ +.......+++..+.+.+||+||+.++..++..++++++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999988777767665 333455667788889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++++++.+..|...+.+.                                                  ....+.|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pii  109 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRV--------------------------------------------------KDRDDVPIV  109 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCEE
Confidence            999999999998776654221                                                  112368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +|+||+|+...+....++...++...+.+++++||+++.|++++|++|+.
T Consensus       110 ~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173      110 LVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             EEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999876667778888888888999999999999999999999975

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04124 RabL2 RabL2 subfamily

Probab=99.97  E-value=1.8e-30  Score=186.19  Aligned_cols=156  Identities=37%  Similarity=0.645  Sum_probs=131.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.++.+.+.+.++.+.+.......+++..+.+.+||++|+..+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777777766776667777888899999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.+++.++..+..|+..+.+                                                   .. .++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~-~~~p~i  108 (161)
T cd04124          81 DVTRKITYKNLSKWYEELRE---------------------------------------------------YR-PEIPCI  108 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCCcEE
Confidence            99999998888866665522                                                   11 268999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+...   ..++...++...+++++++||+++.|++++|+.+++.
T Consensus       109 vv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124         109 VVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             EEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999998531   2344556677778999999999999999999999864

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=1.5e-30  Score=191.19  Aligned_cols=157  Identities=35%  Similarity=0.561  Sum_probs=131.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|+..+..++..++++++++++|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            799999999999999999999999887778876554 3455567788899999999999999999999999999999999


Q ss_pred             CCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         93 IAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      ++++++++.+. .|+..+                                                   .... .+.|++
T Consensus        81 v~~~~sf~~~~~~~~~~i---------------------------------------------------~~~~-~~~pii  108 (189)
T cd04134          81 VDSPDSLENVESKWLGEI---------------------------------------------------REHC-PGVKLV  108 (189)
T ss_pred             CCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCCEE
Confidence            99999999886 354443                                                   2222 368999


Q ss_pred             Eeecccchhhcc------------CCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLR------------AVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+...+            .+..++...++...+ +++++|||+++.|++++|+++++.
T Consensus       109 lvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~  172 (189)
T cd04134         109 LVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARV  172 (189)
T ss_pred             EEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHH
Confidence            999999996532            345667778887776 689999999999999999999875

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=1.8e-30  Score=190.93  Aligned_cols=159  Identities=26%  Similarity=0.424  Sum_probs=126.3

Q ss_pred             eEEEEEEcCCCCcHHHHHH-HHhhCc-----cccccccccee-eeEEEE--------EEEcCeEEEEEEEeCCCCccccc
Q psy15625         11 LFKVVLIGDSGVGKSNLLS-RFTRNE-----FNLESKSTIGV-EFATRS--------IQVDQKTIKAQIWDTAGQERYRA   75 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~G~~~~~~   75 (223)
                      .+||+++|.+|||||||+. ++.+..     +...+.|+++. +.....        ..+++..+.+.+|||+|+..  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 665543     34455666642 222222        24678889999999999865  3


Q ss_pred             cchhhhcCCcEEEEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625         76 ITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE  154 (223)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  154 (223)
                      +...++++++++++|||++++.+++.+. .|.+.+                                             
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i---------------------------------------------  114 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEI---------------------------------------------  114 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHH---------------------------------------------
Confidence            5566899999999999999999999996 365544                                             


Q ss_pred             HHHHHhhhccCCCceEEEeecccchhh-------------------ccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q psy15625        155 RWLRELRDHADQNIVIMLVGNKSDLRH-------------------LRAVPADEAKTFAERNNLSFIETSALDSTNVETA  215 (223)
Q Consensus       155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  215 (223)
                            .... .+.|+++|+||+|+..                   .+.++.++.+.++.+.+++|++|||+++.|++++
T Consensus       115 ------~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~  187 (195)
T cd01873         115 ------RHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDV  187 (195)
T ss_pred             ------HHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHH
Confidence                  2222 2689999999999863                   3678889999999999999999999999999999


Q ss_pred             HHHHHhhC
Q psy15625        216 FQNILTAN  223 (223)
Q Consensus       216 ~~~i~~~~  223 (223)
                      |+.++++|
T Consensus       188 F~~~~~~~  195 (195)
T cd01873         188 FDNAIRAA  195 (195)
T ss_pred             HHHHHHhC
Confidence            99999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0088|consensus

Probab=99.97  E-value=1.3e-31  Score=181.36  Aligned_cols=164  Identities=38%  Similarity=0.699  Sum_probs=149.2

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      .....+||+++|..-+|||||+-++..++|+.....+.--.+..+.+.+++....+.+|||+|++.|+.+-..|+++.++
T Consensus         9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG   88 (218)
T KOG0088|consen    9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG   88 (218)
T ss_pred             CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence            34457999999999999999999999999998888777677788888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||+++.++|+.++.|..++                                                   ..+.+.
T Consensus        89 alLVyDITDrdSFqKVKnWV~El---------------------------------------------------r~mlGn  117 (218)
T KOG0088|consen   89 ALLVYDITDRDSFQKVKNWVLEL---------------------------------------------------RTMLGN  117 (218)
T ss_pred             eEEEEeccchHHHHHHHHHHHHH---------------------------------------------------HHHhCC
Confidence            99999999999999999665555                                                   445556


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      .+-++||+||+|+++.+.++.++.++.++..|..++++||+.+.||.++|+.+.+
T Consensus       118 ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~  172 (218)
T KOG0088|consen  118 EIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTA  172 (218)
T ss_pred             eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999999999998764

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=4.2e-30  Score=185.88  Aligned_cols=162  Identities=39%  Similarity=0.739  Sum_probs=140.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-ccchhhhcCCcEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-AITSAYYRGAVGALL   89 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~   89 (223)
                      .+||+++|++|||||||++++....+...+.++.+.++....+.+++..+.+.+||++|+.++. .+...+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999998887788888888878888888888999999999998776 567888999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||.++++++..+..|++.+....                                                  ...++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------------------------~~~~~p  111 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHS--------------------------------------------------LPNEVP  111 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhc--------------------------------------------------CCCCCC
Confidence            999999999999987766553311                                                  123689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCC---CCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALD---STNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++...++...+++++++||++   +.+++++|..+++.
T Consensus       112 ~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~  167 (170)
T cd04115         112 RILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHK  167 (170)
T ss_pred             EEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence            999999999988778888888899998899999999999   89999999998763

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=3.4e-30  Score=184.71  Aligned_cols=159  Identities=32%  Similarity=0.555  Sum_probs=134.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.++.+...+.++.+..+ .....+++..+.+.+||++|+..+..++..++++++++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6999999999999999999999988777777765433 555667888888999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |+++..++..+..|+..+.+.                                                  ....+.|++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pii  110 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRV--------------------------------------------------KDSDDVPMV  110 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCEE
Confidence            999999998888666655221                                                  112368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+ +....++...++...+++++++||+++.|++++|+++++.
T Consensus       111 vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138         111 LVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             EEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            9999999976 4566778888888889999999999999999999999864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=3e-30  Score=190.20  Aligned_cols=152  Identities=34%  Similarity=0.625  Sum_probs=132.2

Q ss_pred             EcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         17 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        17 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      +|.+|||||||++++..+.+...+.++++.++....+.+++..+.+.+||++|+..+..++..++++++++++|||+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888888988888888888888899999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecc
Q psy15625         97 LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNK  176 (223)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK  176 (223)
                      .++..+..|+.++.+                                                   .. .++|+++|+||
T Consensus        81 ~S~~~i~~w~~~i~~---------------------------------------------------~~-~~~piilvgNK  108 (200)
T smart00176       81 VTYKNVPNWHRDLVR---------------------------------------------------VC-ENIPIVLCGNK  108 (200)
T ss_pred             HHHHHHHHHHHHHHH---------------------------------------------------hC-CCCCEEEEEEC
Confidence            999999877666633                                                   21 36899999999


Q ss_pred             cchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        177 SDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       177 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+.. +.+..+. ..++...++.+++|||+++.|++++|++|++.
T Consensus       109 ~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176      109 VDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             ccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99864 3444444 46777889999999999999999999999863

Ran is involved in the active transport of proteins through nuclear pores.

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=3.5e-30  Score=190.09  Aligned_cols=163  Identities=21%  Similarity=0.332  Sum_probs=127.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc--------cchhhhcC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA--------ITSAYYRG   83 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~   83 (223)
                      +||+|+|.+|||||||++++.++.+...+.++.+.+.....+.+++..+.+.+|||||...+..        .....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888878876666556666788888999999999654321        12234688


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|||.+++++++.+..|++.+.+..                                                ..
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~------------------------------------------------~~  112 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETR------------------------------------------------PA  112 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------------------------------------------cc
Confidence            999999999998888888886665553211                                                01


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...++|+++|+||+|+...+....++.+.++. ..++++++|||++|.|++++|+.+++.
T Consensus       113 ~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~  172 (198)
T cd04142         113 GNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLIS  172 (198)
T ss_pred             CCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence            12478999999999997766666667777654 568999999999999999999998864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=6.1e-30  Score=185.28  Aligned_cols=164  Identities=38%  Similarity=0.714  Sum_probs=139.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||+..+..++..+++++++++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777788777777777888888889999999999989999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.+++.+++....|...+..                                               ........++|++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~p~i  113 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLI-----------------------------------------------QASPSDPENFPFV  113 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHH-----------------------------------------------hcCccCCCCceEE
Confidence            99999888888766654422                                               2222223478999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+..++....++.+.+....+ .+++++|++++.|++++|+++.++
T Consensus       114 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~  165 (172)
T cd01862         114 VLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARK  165 (172)
T ss_pred             EEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            999999998656667788888888887 789999999999999999999875

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=3.5e-30  Score=195.69  Aligned_cols=169  Identities=22%  Similarity=0.409  Sum_probs=138.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.++.+...+.++++ ++....+.+++..+.+.+|||+|+..+..++..++..+|++++||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988877777765 555667778888899999999999988888888899999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |+++.++++.+..|++++.....                                          ..........++|++
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~------------------------------------------~~~~~~~~~~~~piI  117 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKS------------------------------------------CLKNKTKENVKIPMV  117 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhc------------------------------------------ccccccccCCCCcEE
Confidence            99999999999988887744211                                          000011122468999


Q ss_pred             EeecccchhhccCCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      +|+||+|+...+.+..+++.+++.. .++.++++||+++.|++++|++|++.+
T Consensus       118 ivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         118 ICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             EEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999987667777888777654 467899999999999999999998753

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=8.1e-30  Score=182.73  Aligned_cols=160  Identities=40%  Similarity=0.707  Sum_probs=136.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|+|||||++++.+..+...+.++.+.+.....+...+..+.+.+||++|+..+..++..++++++++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887766666666666666777777889999999999989999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |+++.++++.+..|.+++                                                   ......++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~pii  109 (162)
T cd04123          81 DITDADSFQKVKKWIKEL---------------------------------------------------KQMRGNNISLV  109 (162)
T ss_pred             ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCeEE
Confidence            999999888888655544                                                   33333368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++||+|+...+.+..++.+.+....+++++++|+++++|++++|+++.+.
T Consensus       110 iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123         110 IVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999998766777788888888889999999999999999999999764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0097|consensus

Probab=99.97  E-value=3.3e-30  Score=171.56  Aligned_cols=167  Identities=52%  Similarity=0.859  Sum_probs=150.4

Q ss_pred             CCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625          2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY   81 (223)
Q Consensus         2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   81 (223)
                      ...+-.+.+.+|-+++|..|+|||+|+..++..++....+.+++.++.+..+.+.++.+.+++||+.|+++++.+.+.++
T Consensus         2 ~~~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyy   81 (215)
T KOG0097|consen    2 TAAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY   81 (215)
T ss_pred             CCCccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHh
Confidence            33444555679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      +++.+.++|||+++.++...+..|+...                                                   .
T Consensus        82 rgaagalmvyditrrstynhlsswl~da---------------------------------------------------r  110 (215)
T KOG0097|consen   82 RGAAGALMVYDITRRSTYNHLSSWLTDA---------------------------------------------------R  110 (215)
T ss_pred             ccccceeEEEEehhhhhhhhHHHHHhhh---------------------------------------------------h
Confidence            9999999999999999999998666544                                                   3


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI  219 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  219 (223)
                      ....++..+++++||.|++..+.+..++.+++++++|+.|+++||++|+++++.|-..
T Consensus       111 ~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~  168 (215)
T KOG0097|consen  111 NLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLET  168 (215)
T ss_pred             ccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence            3334577889999999999999999999999999999999999999999999987553

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=6.8e-30  Score=183.71  Aligned_cols=159  Identities=33%  Similarity=0.608  Sum_probs=134.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC--cccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN--EFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      +||+++|.+|||||||++++..+  .+...+.++.+.++....+.++ +..+.+.+||++|+..+..+...+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5667777888777766666664 56789999999999988888899999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|||.++++++..+..|++.+..                                                   .. .+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~---------------------------------------------------~~-~~~  108 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRT---------------------------------------------------AS-KHM  108 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCC
Confidence            99999999998888866655422                                                   22 368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.+.+...+.+.+....+++++++||+++.|++++|+.+++.
T Consensus       109 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  162 (164)
T cd04101         109 PGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARA  162 (164)
T ss_pred             CEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHH
Confidence            999999999997766677767777777788899999999999999999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=9.8e-30  Score=184.62  Aligned_cols=157  Identities=31%  Similarity=0.567  Sum_probs=131.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI   93 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (223)
                      |+++|.+|||||||++++.+..+...+.++....+ ...+.+++..+.+.+|||+|+..+..++..+++++|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999998877777765444 44566788888999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEe
Q psy15625         94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV  173 (223)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  173 (223)
                      +++++++.+..                                                  .|+..+.... .++|+++|
T Consensus        80 ~~~~s~~~~~~--------------------------------------------------~~~~~i~~~~-~~~piilv  108 (174)
T smart00174       80 DSPASFENVKE--------------------------------------------------KWYPEVKHFC-PNTPIILV  108 (174)
T ss_pred             CCHHHHHHHHH--------------------------------------------------HHHHHHHhhC-CCCCEEEE
Confidence            99999988852                                                  2333333322 37899999


Q ss_pred             ecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        174 GNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       174 ~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +||+|+...            +.++.++...++...+. ++++|||+++.|++++|+.+++.
T Consensus       109 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~  170 (174)
T smart00174      109 GTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRA  170 (174)
T ss_pred             ecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            999999652            23677888889999986 89999999999999999999875

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=8.4e-30  Score=187.09  Aligned_cols=158  Identities=34%  Similarity=0.537  Sum_probs=131.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      +||+++|.+|||||||++++.++.+...+.++.+.++.. .+... +..+.+.+|||+|+..+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999887777777665533 34454 6778999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHH-HHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         91 YDIAKHLTYENVER-WLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        91 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      ||+++..+++.+.. |+..+                                                   ... ..+.|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~-~~~~p  107 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEV---------------------------------------------------NHF-CPGTP  107 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHH---------------------------------------------------HHh-CCCCC
Confidence            99999999988853 43322                                                   222 23689


Q ss_pred             EEEeecccchhhc----cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHL----RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+...    +.+..++.++++...+. +++++||+++.|++++|+.+++.
T Consensus       108 iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  165 (187)
T cd04132         108 IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEE  165 (187)
T ss_pred             EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence            9999999998653    24567788899999988 89999999999999999999875

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=99.97  E-value=1.5e-29  Score=186.71  Aligned_cols=159  Identities=35%  Similarity=0.655  Sum_probs=134.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      +||+++|.+|||||||++++.++.+.. .+.++.+.++....+.+++..+.+.+||++|+..+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 5667777777777788888889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||+++..+++.+..|++.+                                                   .... .+.|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~-~~~pi  108 (193)
T cd04118          81 YDLTDSSSFERAKFWVKEL---------------------------------------------------QNLE-EHCKI  108 (193)
T ss_pred             EECCCHHHHHHHHHHHHHH---------------------------------------------------HhcC-CCCCE
Confidence            9999999998887665544                                                   2221 26899


Q ss_pred             EEeecccchhhc----cCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHL----RAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.    +.+..++...++...+++++++||+++.|++++|+++.+.
T Consensus       109 ilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~  164 (193)
T cd04118         109 YLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAED  164 (193)
T ss_pred             EEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999998532    3455567788888888999999999999999999999864

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=2e-29  Score=182.83  Aligned_cols=158  Identities=32%  Similarity=0.563  Sum_probs=132.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|+|||||++++.+..+...+.++. .+.....+.+++..+.+.+||++|+..+..++..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988877776665 4455556777888889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         92 DIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      |++++++++.+. .|+..+                                                   .... .+.|+
T Consensus        80 d~~~~~sf~~~~~~~~~~~---------------------------------------------------~~~~-~~~pi  107 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEI---------------------------------------------------RKHN-PKAPI  107 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHH---------------------------------------------------HhhC-CCCCE
Confidence            999999998885 354433                                                   2211 26899


Q ss_pred             EEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++++||+|+..            .+.+..++...++.+.+. ++++|||+++.|++++|+.++-+
T Consensus       108 ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~  172 (173)
T cd04130         108 ILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAILA  172 (173)
T ss_pred             EEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999863            346677889999998887 89999999999999999998865

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=2.6e-29  Score=180.17  Aligned_cols=160  Identities=49%  Similarity=0.853  Sum_probs=137.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||+..+......+++++|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777788888877777778888889999999999999888899999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.++..+++.+..|++.+..+.                                                  ...+.|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~~~~~~  110 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYS--------------------------------------------------TNNDIVKM  110 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhC--------------------------------------------------CCCCCcEE
Confidence            9999999988886655443221                                                  12478999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.. .....++...++...+++++++||++|+|++++++.+++.
T Consensus       111 iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         111 LVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             EEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            9999999974 4566778888999999999999999999999999998764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=1.3e-29  Score=183.08  Aligned_cols=162  Identities=20%  Similarity=0.230  Sum_probs=134.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .+.+||+++|.+|||||||++++.+..+. ..+.++.+..+....+.+++..+.+.+||++|+..+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999987 77888887777767777888888999999999999988899999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.+++.+++.+..|++.+                                                   ..  ..+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~--~~~  108 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKY---------------------------------------------------FM--LGE  108 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHh---------------------------------------------------cc--CCC
Confidence            9999999998888776544322                                                   11  126


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhhC
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      +|+++|+||+|+.+.+.....+...++...++. ++++||+++.|++++|+.+.+++
T Consensus       109 ~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         109 IPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             CeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence            899999999999754444445566777777774 79999999999999999998753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=2.5e-29  Score=187.84  Aligned_cols=168  Identities=42%  Similarity=0.683  Sum_probs=140.0

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      +....+..+||+|+|.+|||||||+++|.+..+. .+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus         7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   85 (211)
T PLN03118          7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN   85 (211)
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence            3455667899999999999999999999998774 455777777777777788888899999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|||.++.+++..+..++.                                                  ..+...
T Consensus        86 ~d~~vlv~D~~~~~sf~~~~~~~~--------------------------------------------------~~~~~~  115 (211)
T PLN03118         86 AQGIILVYDVTRRETFTNLSDVWG--------------------------------------------------KEVELY  115 (211)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHH--------------------------------------------------HHHHHh
Confidence            999999999999999988864222                                                  112211


Q ss_pred             c-CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 A-DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      . ..+.|+++|+||+|+...+.+..++...++...++.++++||+++.|++++|++|.+.
T Consensus       116 ~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~  175 (211)
T PLN03118        116 STNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALK  175 (211)
T ss_pred             cCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            1 2357899999999998767777788888888899999999999999999999999853

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=3.9e-29  Score=180.59  Aligned_cols=164  Identities=43%  Similarity=0.790  Sum_probs=138.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ..+.++|+++|++|||||||++++....+...+.++.+.+.....+.+++..+.+.+||++|+..+......+++.++++
T Consensus         4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999998887777777777777777777888888999999999998888888999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||.++..+++.+..|+..+                                                   ......+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l---------------------------------------------------~~~~~~~  112 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREI---------------------------------------------------EQYANNK  112 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCC
Confidence            9999999988888887555544                                                   3333346


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++++||+|+.+.+.+..+..+.+.......++++||+++.|++++|++|.+.
T Consensus       113 ~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~  167 (169)
T cd04114         113 VITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR  167 (169)
T ss_pred             CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            8999999999998767777777777777777889999999999999999999863

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=2.8e-29  Score=182.20  Aligned_cols=160  Identities=28%  Similarity=0.486  Sum_probs=131.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||++|+..+...+..++++++++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988777766654 333445667888888999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |+.++.+++.+..                                                  .|...+... ..+.|++
T Consensus        80 ~~~~~~s~~~~~~--------------------------------------------------~~~~~l~~~-~~~~pii  108 (174)
T cd04135          80 SVVNPASFQNVKE--------------------------------------------------EWVPELKEY-APNVPYL  108 (174)
T ss_pred             ECCCHHHHHHHHH--------------------------------------------------HHHHHHHhh-CCCCCEE
Confidence            9999999888852                                                  222333322 3478999


Q ss_pred             Eeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        172 LVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       172 vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      +++||+|+.+.            +.++.++...++...++ ++++|||+++.|++++|+.+++.+
T Consensus       109 vv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         109 LVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             EEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            99999998542            35677888888888886 799999999999999999998764

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=3.5e-29  Score=180.76  Aligned_cols=159  Identities=30%  Similarity=0.518  Sum_probs=135.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||+..+..++..++++++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            689999999999999999999998877777776544 3566677888889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.+++++++.+..|...+.+.                                                  ....+.|++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~pii  110 (168)
T cd04177          81 SVTSEASLNELGELREQVLRI--------------------------------------------------KDSDNVPMV  110 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------hCCCCCCEE
Confidence            999999999998766655221                                                  112378999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +++||+|+.+.+....++...++++.+ ++++++||+++.|++++|++++.
T Consensus       111 iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~  161 (168)
T cd04177         111 LVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVR  161 (168)
T ss_pred             EEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            999999998777777778888888887 78999999999999999999875

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00154 Rab Rab family

Probab=99.97  E-value=2.8e-29  Score=179.01  Aligned_cols=159  Identities=56%  Similarity=0.932  Sum_probs=139.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++....+.+||+||+..+......+++++|++++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998887788888888888888888889999999999988888999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.++++++..+..|+..+                                                   ......+.|++
T Consensus        81 d~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~p~i  109 (159)
T cd00154          81 DITNRESFENLDKWLKEL---------------------------------------------------KEYAPENIPII  109 (159)
T ss_pred             ECCCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCCCcEE
Confidence            999988888888655544                                                   33332468999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +++||+|+........++.+.+....+.+++++|++++.|++++|++|.+
T Consensus       110 vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154         110 LVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             EEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            99999999755667788899999888999999999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=5.1e-29  Score=177.77  Aligned_cols=154  Identities=21%  Similarity=0.348  Sum_probs=125.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++..+.+...+.++ +..+ ...+.+++..+.+.+||++|+..     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            48999999999999999999988876655443 3333 45677888888999999999864     34678899999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++++++.+..|++++....                                                  ...++|++
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~--------------------------------------------------~~~~~pii  103 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYR--------------------------------------------------NISEIPLI  103 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCCCCCEE
Confidence            9999999999987776663321                                                  11368999


Q ss_pred             Eeecccchh--hccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLR--HLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.  ..+.+..++.++++++. ++.+++|||+++.|++++|+.+++.
T Consensus       104 lvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         104 LVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            999999985  35678888888898776 5899999999999999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=2.6e-29  Score=180.89  Aligned_cols=160  Identities=31%  Similarity=0.513  Sum_probs=130.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc-ccccchhhhcCCcEEEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER-YRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~v~   91 (223)
                      ||+++|++|||||||++++....+...+.++....+ ...+.+++..+.+.+||+||+.. .......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998877666666654333 45566788888999999999875 3445667899999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++++++.+..|+..+...                                                .. ...+.|++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~------------------------------------------------~~-~~~~~pii  110 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREI------------------------------------------------KK-RDREIPVI  110 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHH------------------------------------------------hc-CCCCCCEE
Confidence            999999999998766655221                                                10 12368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC-CHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST-NVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+.+.+..++...++...+.+++++||+++. |++++|+.+++.
T Consensus       111 lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~  162 (165)
T cd04146         111 LVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCRE  162 (165)
T ss_pred             EEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHH
Confidence            999999998777788888889999899999999999995 999999999864

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=6.6e-29  Score=186.40  Aligned_cols=159  Identities=29%  Similarity=0.402  Sum_probs=130.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc-CCcEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR-GAVGALL   89 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~-~~~~~i~   89 (223)
                      +||+++|.+|||||||++++..+.+. ..+.++.+.++....+.+++....+.+||++|+.  ......+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999887775 5555665546667777788888899999999987  234455667 9999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||++++.+++.+..|+..+...                                                  ....++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~--------------------------------------------------~~~~~~p  108 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRN--------------------------------------------------RQLEDRP  108 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCC
Confidence            99999999999888666655321                                                  1123789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.
T Consensus       109 iilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~  161 (221)
T cd04148         109 IILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQ  161 (221)
T ss_pred             EEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            99999999998777778888888888889999999999999999999999863

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.96  E-value=5e-28  Score=173.81  Aligned_cols=159  Identities=34%  Similarity=0.557  Sum_probs=132.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||+++++...+...+.++.+.. .......++..+.+.+||+||+.++...+..+++.++++++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999988877666665433 3445567778889999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |+.++.++..+..|...+...                                                  ....++|++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~pii  109 (164)
T cd04139          80 SITDMESFTATAEFREQILRV--------------------------------------------------KDDDNVPLL  109 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCEE
Confidence            999999998888666655221                                                  112479999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +|+||+|+.+.+....++...+....+++++++||+++.|++++|+++.+
T Consensus       110 iv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139         110 LVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             EEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999764556677778888888899999999999999999999875

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=5.6e-28  Score=175.53  Aligned_cols=159  Identities=31%  Similarity=0.522  Sum_probs=128.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      .||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||+|+..+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999988877777765444 345667788889999999999999888888899999999999


Q ss_pred             eCCCcccHHHHHH-HHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         92 DIAKHLTYENVER-WLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        92 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      |+++.++++.+.. |...+                                                   .... .+.|+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~~~pi  108 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEV---------------------------------------------------KHFC-PNVPI  108 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHH---------------------------------------------------HhhC-CCCCE
Confidence            9999988887752 43322                                                   2221 36899


Q ss_pred             EEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        171 MLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       171 ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      ++|+||+|+.+.            ..+...+.+.++...+. ++++|||+++.|++++|++|.++|
T Consensus       109 ilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         109 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             EEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            999999998542            23445677777777764 799999999999999999999765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0081|consensus

Probab=99.96  E-value=4e-30  Score=174.22  Aligned_cols=166  Identities=42%  Similarity=0.763  Sum_probs=147.9

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc---------CeEEEEEEEeCCCCcccccc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD---------QKTIKAQIWDTAGQERYRAI   76 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~G~~~~~~~   76 (223)
                      -.+++.+|.+.+|.+|+||||++.+++.+++......++++++..+.+-++         +.++.+++|||+|++.++++
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            457788999999999999999999999999999999999999988887662         35688999999999999999


Q ss_pred             chhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625         77 TSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW  156 (223)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  156 (223)
                      ...|++.+-++++.||++++.+|-++..|+.+++.++                                           
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA-------------------------------------------  120 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA-------------------------------------------  120 (219)
T ss_pred             HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh-------------------------------------------
Confidence            9999999999999999999999999997877764421                                           


Q ss_pred             HHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                             ..++..+++++||+|+++.+.++.++..+++.++|+|++++||-++.|+++..+.+..
T Consensus       121 -------YcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lld  178 (219)
T KOG0081|consen  121 -------YCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLD  178 (219)
T ss_pred             -------ccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHH
Confidence                   1236778999999999999999999999999999999999999999999998777654

>cd00876 Ras Ras family

Probab=99.96  E-value=6.1e-28  Score=172.61  Aligned_cols=159  Identities=37%  Similarity=0.584  Sum_probs=134.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|++|||||||++++++..+...+.++.+ +........++..+.+.+||+||+..+...+..++++++++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777666655 5555666677777899999999999888999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      .++++++..+..|+..+.+...                                                  ..+.|+++
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~--------------------------------------------------~~~~p~iv  109 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKD--------------------------------------------------DEDIPIVL  109 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcC--------------------------------------------------CCCCcEEE
Confidence            9999998888866655533111                                                  13789999


Q ss_pred             eecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++||+|+...+....+++..+....+.+++++|++++.|++++|++|.+.
T Consensus       110 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         110 VGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             EEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            99999998766777888889988888999999999999999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=2.8e-28  Score=175.88  Aligned_cols=156  Identities=19%  Similarity=0.375  Sum_probs=120.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|.+|||||||++++....+. .+.++.+.++.  ..  ....+.+.+||++|+..+..++..+++++++++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999887664 34566665543  22  235678999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.++..+..++.++.                                                  ......++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~--------------------------------------------------~~~~~~~~  111 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRII--------------------------------------------------NDREMRDA  111 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHh--------------------------------------------------cCHhhcCC
Confidence            9999999988888875544331                                                  11111368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      |+++|+||+|+.+  ....+++.....     ..++.++++||++|.|++++|++|.+
T Consensus       112 piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         112 LLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             cEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            9999999999864  245566666542     12346899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=1.6e-27  Score=172.41  Aligned_cols=159  Identities=31%  Similarity=0.569  Sum_probs=128.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||+++|++..+...+.++.. +........++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988666666654 334445567788889999999999988888888889999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++.++.....                                                  .|+..+..... +.|++
T Consensus        80 d~~~~~s~~~~~~--------------------------------------------------~~~~~~~~~~~-~~p~i  108 (171)
T cd00157          80 SVDSPSSFENVKT--------------------------------------------------KWIPEIRHYCP-NVPII  108 (171)
T ss_pred             ECCCHHHHHHHHH--------------------------------------------------HHHHHHHhhCC-CCCEE
Confidence            9999888776642                                                  23333333322 79999


Q ss_pred             Eeecccchhhcc-----------CCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLR-----------AVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+....           .+..++..++....+. +++++||++++|++++|++|+++
T Consensus       109 vv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  171 (171)
T cd00157         109 LVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIRA  171 (171)
T ss_pred             EEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhhC
Confidence            999999987543           2356677888888887 89999999999999999999864

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0395|consensus

Probab=99.96  E-value=5.4e-28  Score=176.86  Aligned_cols=162  Identities=34%  Similarity=0.513  Sum_probs=146.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.+|+|||+|..++....+...+.|+++ +.+.+.+.+++..+.+.++||+|+.++..+...+++.++++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            368999999999999999999999999999999997 5567788899999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      ||++++..+|+.+..+++.+.+..                                                  ....+|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~--------------------------------------------------~~~~~P  110 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVK--------------------------------------------------GRDDVP  110 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh--------------------------------------------------CcCCCC
Confidence            999999999999997777663321                                                  123589


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+...+.+..++.+.++..++++++++||+.+.+++++|..|.+.
T Consensus       111 ivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~  163 (196)
T KOG0395|consen  111 IILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVRE  163 (196)
T ss_pred             EEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHH
Confidence            99999999999989999999999999999999999999999999999998863

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=1.2e-28  Score=177.06  Aligned_cols=152  Identities=20%  Similarity=0.318  Sum_probs=120.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI   93 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (223)
                      |+++|.+|||||||++++.+..+...+.++.+...    ..+++..+.+.+||++|+..+..++..+++++|++++|+|.
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            78999999999999999999887777777776542    33455678899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEe
Q psy15625         94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV  173 (223)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  173 (223)
                      +++.++.....|+..+                                                   .... .++|+++|
T Consensus        78 t~~~s~~~~~~~l~~~---------------------------------------------------~~~~-~~~piilv  105 (164)
T cd04162          78 ADSERLPLARQELHQL---------------------------------------------------LQHP-PDLPLVVL  105 (164)
T ss_pred             CCHHHHHHHHHHHHHH---------------------------------------------------HhCC-CCCcEEEE
Confidence            9988888777554433                                                   2111 37899999


Q ss_pred             ecccchhhccCCCh----HHHHHHHHHcCCeEEEeecCC------CCCHHHHHHHHHh
Q psy15625        174 GNKSDLRHLRAVPA----DEAKTFAERNNLSFIETSALD------STNVETAFQNILT  221 (223)
Q Consensus       174 ~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~i~~  221 (223)
                      +||+|+...+....    .+...++.+.++.++++||++      ++|++++|+.++.
T Consensus       106 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         106 ANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             EeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            99999876443221    134555566788899999888      9999999999874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=3.3e-27  Score=176.95  Aligned_cols=165  Identities=33%  Similarity=0.585  Sum_probs=138.6

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      +.......+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|+..+..++..+++.
T Consensus         2 ~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~   81 (215)
T PTZ00132          2 QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIK   81 (215)
T ss_pred             ccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhcc
Confidence            44566778999999999999999999988888888888998888888777778888999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      ++++++|||+++..++..+..|+..+..                                                   .
T Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~  110 (215)
T PTZ00132         82 GQCAIIMFDVTSRITYKNVPNWHRDIVR---------------------------------------------------V  110 (215)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------h
Confidence            9999999999999999988866665522                                                   1


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      . .+.|+++++||+|+.+ +.... +...++...++.++++||+++.|+++.|.+|++.
T Consensus       111 ~-~~~~i~lv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~  166 (215)
T PTZ00132        111 C-ENIPIVLVGNKVDVKD-RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLWLARR  166 (215)
T ss_pred             C-CCCCEEEEEECccCcc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            1 3689999999999864 23333 3345677788899999999999999999999875

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=2.7e-27  Score=172.75  Aligned_cols=160  Identities=33%  Similarity=0.511  Sum_probs=131.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      .||+++|.+|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+||+||+.++..++..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999887666666554333 455566777788999999999999888999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.++..+++.+..|++.+.+                                                  .....+.|++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~p~i  110 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILD--------------------------------------------------MLGKESVPIV  110 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHH--------------------------------------------------hcCCCCCCEE
Confidence            99999999888866554422                                                  1122468999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+...+.+..++...++...+.+++++||+++.|+.++|+++.+.
T Consensus       111 lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (180)
T cd04137         111 LVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEE  161 (180)
T ss_pred             EEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999997666666667778888888899999999999999999999764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=2.7e-27  Score=175.23  Aligned_cols=159  Identities=31%  Similarity=0.498  Sum_probs=127.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|.+|||||||++++....+...+.++.. +.....+.+.+..+.+++||++|+..+..++..+++++|++++|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776656553 4455566677777899999999999998888899999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      .+++.+++.+..|+..+...                                                  ....++|+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~piil  109 (198)
T cd04147          80 VDDPESFEEVERLREEILEV--------------------------------------------------KEDKFVPIVV  109 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCcEEE
Confidence            99999999888666544221                                                  1123689999


Q ss_pred             eecccchhh-ccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        173 VGNKSDLRH-LRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       173 v~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+||+|+.+ .+.+..++..+... ..+.+++++||+++.|++++|+++++.
T Consensus       110 v~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  161 (198)
T cd04147         110 VGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQ  161 (198)
T ss_pred             EEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence            999999865 34455545444443 456789999999999999999999864

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=6.4e-27  Score=171.68  Aligned_cols=158  Identities=35%  Similarity=0.568  Sum_probs=127.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      .||+++|++|+|||||++++....+...+.++....+ ...+.+++..+.+.+||++|+..+......+++.+++++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998777666656554333 345556777788999999999888877777889999999999


Q ss_pred             eCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         92 DIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ++++.++++.+. .|+..+                                                   .... .+.|+
T Consensus        81 ~i~~~~s~~~~~~~~~~~i---------------------------------------------------~~~~-~~~pi  108 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEV---------------------------------------------------RRYC-PNVPV  108 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CCCCE
Confidence            999999988885 344433                                                   3222 25899


Q ss_pred             EEeecccchhh----------ccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRH----------LRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+          .+.+..++...++.+.+. ++++|||+++.|++++|+++.+.
T Consensus       109 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  171 (187)
T cd04129         109 ILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRA  171 (187)
T ss_pred             EEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence            99999999854          244556778888888885 79999999999999999999864

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=1.7e-27  Score=172.10  Aligned_cols=153  Identities=21%  Similarity=0.373  Sum_probs=119.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|.+|||||||++++.+..+.. +.++.+..+.  .  +....+.+.+||+||+..+...+..+++++|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999986643 5566554442  2  33356789999999999999899999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      .++++++..+..|+..+.+                                                  .....+.|+++
T Consensus        76 ~s~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~piil  105 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLT--------------------------------------------------EKELRDALLLI  105 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhc--------------------------------------------------ChhhCCCCEEE
Confidence            9999999888866554422                                                  11113579999


Q ss_pred             eecccchhhccCCChHHHHHHHHHcC------CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTFAERNN------LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+||+|+.+  ....++.++++...+      +.+++|||+++.|++++|++|.+.
T Consensus       106 v~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~  159 (169)
T cd04158         106 FANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ  159 (169)
T ss_pred             EEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence            999999964  355666666654222      368899999999999999999863

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.95  E-value=1.9e-27  Score=170.10  Aligned_cols=153  Identities=20%  Similarity=0.379  Sum_probs=114.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++..+.+. .+.++.+.+..  .+.  ...+.+.+||++|+..+..++..+++++|++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999877775 35566665442  222  34678999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.++..++.....++..+..                                                  .....+.|++
T Consensus        76 D~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~pii  105 (159)
T cd04150          76 DSNDRERIGEAREELQRMLN--------------------------------------------------EDELRDAVLL  105 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHh--------------------------------------------------cHHhcCCCEE
Confidence            99998888888755443311                                                  1111358999


Q ss_pred             EeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +++||+|+.+.  ...++......     ..++.++++||++|+|++++|++|.+
T Consensus       106 lv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         106 VFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             EEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            99999998642  22333222221     12345789999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04154 Arl2 Arl2 subfamily

Probab=99.95  E-value=2.2e-27  Score=172.15  Aligned_cols=158  Identities=18%  Similarity=0.381  Sum_probs=120.4

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..+..+||+++|++|||||||++++.+..+. .+.++.+..  ...+.++  .+.+.+||+||+..+..++..+++++++
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            3445689999999999999999999987553 344555433  3334443  4688999999999888888899999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.++..++.....|+..+..                                                  .....
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~  114 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQ--------------------------------------------------EERLA  114 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHh--------------------------------------------------Chhhc
Confidence            9999999999888887755554311                                                  11123


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ++|+++|+||+|+.+.  ...++...+..     ..+++++++||++|.|++++|+++++
T Consensus       115 ~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         115 GATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             CCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            6899999999999752  24455555543     24568999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=2.9e-27  Score=172.45  Aligned_cols=157  Identities=19%  Similarity=0.336  Sum_probs=116.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      +..+||+++|.+|||||||++++..+.+. .+.++++.++.  .  ++...+.+.+||+||+..+..++..+++++|+++
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34589999999999999999999887764 34566665442  2  3345678999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++.+++..+..++..+.                                                  ......++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l--------------------------------------------------~~~~~~~~  119 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRML--------------------------------------------------NEDELRDA  119 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHh--------------------------------------------------cCHhhCCC
Confidence            9999999988877764443321                                                  11111368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHc-----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERN-----NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++++||+|+++.  ...++......-.     .+.++++||++|+|++++|++|.+.
T Consensus       120 piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~  176 (181)
T PLN00223        120 VLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN  176 (181)
T ss_pred             CEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence            99999999998753  3333433332111     1235689999999999999999763

>cd01893 Miro1 Miro1 subfamily

Probab=99.95  E-value=6.2e-27  Score=168.66  Aligned_cols=158  Identities=31%  Similarity=0.383  Sum_probs=117.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.++.+...+..+ . ........+++..+.+.+||++|...+...+..+++.++++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-L-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-c-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999999886554322 1 222333445667789999999999887777777789999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++.+++.+..                                                  .|...+.... .+.|++
T Consensus        79 d~~~~~s~~~~~~--------------------------------------------------~~~~~i~~~~-~~~pvi  107 (166)
T cd01893          79 SVDRPSTLERIRT--------------------------------------------------KWLPLIRRLG-VKVPII  107 (166)
T ss_pred             ECCCHHHHHHHHH--------------------------------------------------HHHHHHHHhC-CCCCEE
Confidence            9999999888752                                                  2333333332 278999


Q ss_pred             EeecccchhhccCC--ChHHHHHHHHHc-C-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAV--PADEAKTFAERN-N-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~--~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+.+..  ..++...+..+. + .++++|||+++.|++++|+.+.+.
T Consensus       108 iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~  162 (166)
T cd01893         108 LVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKA  162 (166)
T ss_pred             EEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence            99999999764432  123333333333 2 379999999999999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0083|consensus

Probab=99.95  E-value=4.3e-29  Score=164.48  Aligned_cols=156  Identities=46%  Similarity=0.761  Sum_probs=138.1

Q ss_pred             EEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625         15 VLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI   93 (223)
Q Consensus        15 ~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (223)
                      +++|.+++|||+|+-++....+... ...++++++..+.+..++..+.+++|||.|++.++++...|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            3689999999999998887766543 458889999999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEe
Q psy15625         94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV  173 (223)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  173 (223)
                      .+.-+|++++.|+.++-                                                   ++....+.+.++
T Consensus        81 ankasfdn~~~wlsei~---------------------------------------------------ey~k~~v~l~ll  109 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIH---------------------------------------------------EYAKEAVALMLL  109 (192)
T ss_pred             ccchhHHHHHHHHHHHH---------------------------------------------------HHHHhhHhHhhh
Confidence            99999999997766653                                                   333335667899


Q ss_pred             ecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        174 GNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       174 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +||||+..++.+..++.+.+++.+++|+.++||++|.|++-.|-.|.+
T Consensus       110 gnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~  157 (192)
T KOG0083|consen  110 GNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAE  157 (192)
T ss_pred             ccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHH
Confidence            999999988999999999999999999999999999999999887764

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.95  E-value=5.5e-27  Score=170.24  Aligned_cols=157  Identities=21%  Similarity=0.351  Sum_probs=117.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ++.+||+++|.+|||||||++++..+.+. .+.++.+.++..  ..  ...+.+.+||++|+..+..++..+++++++++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            44699999999999999999999877663 355666655432  22  24578999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.+++....++..+..                                                  .....++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~--------------------------------------------------~~~~~~~  115 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLN--------------------------------------------------EDELRDA  115 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhh--------------------------------------------------CHhhcCC
Confidence            99999999888888765554321                                                  1111368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.  ...+++.....     ...+.++++||++|.|++++|++|.+.
T Consensus       116 piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~  172 (175)
T smart00177      116 VILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN  172 (175)
T ss_pred             cEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence            99999999998652  22333333221     123347789999999999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.95  E-value=7.4e-27  Score=170.75  Aligned_cols=160  Identities=21%  Similarity=0.368  Sum_probs=121.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .++||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|+..+..++..+++++++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999998877543 466665555544443 346789999999999988889999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++..+++.+..|+.++...                                                  ....++
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~--------------------------------------------------~~~~~~  110 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRF--------------------------------------------------SENQGV  110 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhh--------------------------------------------------hhcCCC
Confidence            999999988887777555544221                                                  111368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+  ....++...+...      .+++++++||+++.|++++|++|.+.
T Consensus       111 p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~  168 (183)
T cd04152         111 PVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEM  168 (183)
T ss_pred             cEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence            9999999999864  2344445444321      13468999999999999999998753

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG0393|consensus

Probab=99.95  E-value=1.2e-27  Score=171.31  Aligned_cols=162  Identities=33%  Similarity=0.567  Sum_probs=145.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ..+|+.++|..++|||+|+-.+..+.++..+.|++- +-+...+.++ ++.+.+.+|||.|+++|..++...+..+|.++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            568999999999999999999999999999999996 5557777785 99999999999999999999988999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      ++|++.++.+++++..                                                  +|+.++..+.+ +.
T Consensus        82 ~cfsv~~p~S~~nv~~--------------------------------------------------kW~pEi~~~cp-~v  110 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKS--------------------------------------------------KWIPEIKHHCP-NV  110 (198)
T ss_pred             EEEEcCChhhHHHHHh--------------------------------------------------hhhHHHHhhCC-CC
Confidence            9999999999999863                                                  77788877774 89


Q ss_pred             eEEEeecccchhh------------ccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        169 VIMLVGNKSDLRH------------LRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       169 p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      |+++|++|.||.+            ...++.++.+.++.+.| ..+++|||+++.|++++|+..++++
T Consensus       111 piiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~  178 (198)
T KOG0393|consen  111 PIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAA  178 (198)
T ss_pred             CEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence            9999999999974            23678899999999999 5799999999999999999988754

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=1.7e-26  Score=170.09  Aligned_cols=167  Identities=22%  Similarity=0.404  Sum_probs=128.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-----CeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-----QKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      +||+++|.+|||||||++++.++.+...+.++++.++..+.+.++     +..+.+.+||++|+..+..++..+++++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888898887877777664     467899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||+++.++++.+..|+.++.............                       .+       ..  .-......
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~-----------------------~~-------~~--~~~~~~~~  128 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVT-----------------------NG-------DY--DSEQFGGN  128 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccc-----------------------cc-------cc--cccccCCC
Confidence            999999999999999999999886643211000000                       00       00  00111224


Q ss_pred             CceEEEeecccchhhccCCChH----HHHHHHHHcCCeEEEeecCCCC
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPAD----EAKTFAERNNLSFIETSALDST  210 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~  210 (223)
                      ++|+++|+||+|+.+.+.+..+    ....++.+.+++.++.+++...
T Consensus       129 ~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~  176 (202)
T cd04102         129 QIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR  176 (202)
T ss_pred             CceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence            6899999999999765555444    3456778899998888888654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=2.4e-26  Score=167.82  Aligned_cols=157  Identities=19%  Similarity=0.357  Sum_probs=115.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|++|||||||++++..+.+.. +.++.+.++.  .+  ....+.+.+||++|+..+..++..+++++|+++
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TV--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EE--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998777654 4566655443  22  335578999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++.+++.....++..+.                                                  ......++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~--------------------------------------------------~~~~~~~~  119 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERML--------------------------------------------------SEDELRDA  119 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHH--------------------------------------------------hCHhhcCC
Confidence            9999999888887764444331                                                  11111368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||.|+.+  ....+++.....     ...+.++++||++|.|++++|++|.+.
T Consensus       120 piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~  176 (182)
T PTZ00133        120 VLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSAN  176 (182)
T ss_pred             CEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence            9999999999864  223333322211     112346789999999999999999863

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=1.7e-26  Score=165.62  Aligned_cols=155  Identities=19%  Similarity=0.354  Sum_probs=114.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc-cccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +|+++|.+|||||||++++.+... ...+.++.+.....    +....+.+.+||+||+..+..++..++++++++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 44555666544322    2335678999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.++..++.....|+..+.+.                                                ......++|++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~p~i  108 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNH------------------------------------------------PDIKHRRVPIL  108 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcC------------------------------------------------cccccCCCCEE
Confidence            999988887777555544211                                                01112478999


Q ss_pred             EeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +|+||+|+.+..  ..++......     ...++++++||+++.|++++|++|.+
T Consensus       109 iv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         109 FFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             EEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            999999986522  2223222211     12345899999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.94  E-value=3.3e-26  Score=166.07  Aligned_cols=155  Identities=23%  Similarity=0.371  Sum_probs=116.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.+|+|||||+++++...+.. ..++.+.++.  ....  ..+.+.+||+||+..+...+..+++++|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            35899999999999999999999887754 4466554442  2222  35789999999999998889999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.++++++.....++..+.+                                                  .....++|
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~--------------------------------------------------~~~~~~~p  118 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLA--------------------------------------------------HEDLRKAV  118 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHh--------------------------------------------------chhhcCCC
Confidence            9999998877777654443311                                                  11123689


Q ss_pred             EEEeecccchhhccCCChHHHHH-HH----HHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKT-FA----ERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +++++||+|+.+  ....++..+ +.    ...++++++|||+++.|++++|++|.+
T Consensus       119 ~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         119 LLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             EEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            999999999865  223333322 22    224567999999999999999999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.94  E-value=1.3e-26  Score=167.13  Aligned_cols=153  Identities=21%  Similarity=0.338  Sum_probs=115.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      +|+++|.+|||||||++++.+. +...+.++.+...  ..+..  ..+.+.+||+||+..+..++..++++++++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999977 5556667766542  23333  45788999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      .++..++..+..|+..+..                                                  .....++|+++
T Consensus        76 ~s~~~s~~~~~~~l~~l~~--------------------------------------------------~~~~~~~pili  105 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQ--------------------------------------------------HPRVSGKPILV  105 (167)
T ss_pred             CCchhHHHHHHHHHHHHHc--------------------------------------------------CccccCCcEEE
Confidence            9999888888766554422                                                  11113689999


Q ss_pred             eecccchhhccCCChHHH------HHHHHHc--CCeEEEeecCCC------CCHHHHHHHHHhh
Q psy15625        173 VGNKSDLRHLRAVPADEA------KTFAERN--NLSFIETSALDS------TNVETAFQNILTA  222 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~------~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~  222 (223)
                      |+||+|+++.+.  ..+.      ..++.+.  .+.+++|||++|      .|+++.|+||.++
T Consensus       106 v~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~~  167 (167)
T cd04161         106 LANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLAA  167 (167)
T ss_pred             EEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhcC
Confidence            999999976331  2221      2233222  346888999998      8999999999764

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.94  E-value=6.5e-26  Score=163.44  Aligned_cols=153  Identities=22%  Similarity=0.409  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccc------ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFN------LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      +|+++|++|+|||||++++.+....      ..+.++.+.+.  ..+.+  ....+.+||+||+..+..++..+++++++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999875332      12233433333  23333  35689999999999999888999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.+++.++.....++..+.                                                  ......
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~  106 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVL--------------------------------------------------RNEALE  106 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHH--------------------------------------------------hChhhc
Confidence            999999998877777665544331                                                  111123


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ++|+++++||+|+.+.  ...++...+...       .+++++++||++|.|+++++++|.+
T Consensus       107 ~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         107 GVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             CCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            6899999999998652  333444444332       2457999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.94  E-value=3.8e-26  Score=163.52  Aligned_cols=154  Identities=23%  Similarity=0.417  Sum_probs=113.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      +|+++|.+|||||||++++.+..+.. ..++.+.+.  ..+.. ...+.+.+||++|+..+...+..++++++++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999988753 345555443  23333 245689999999999888888889999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      .+++.++.....|+.++..                                                  .....+.|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~piil  106 (160)
T cd04156          77 SSDEARLDESQKELKHILK--------------------------------------------------NEHIKGVPVVL  106 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHh--------------------------------------------------chhhcCCCEEE
Confidence            9998877777655443311                                                  11113689999


Q ss_pred             eecccchhhccCCChHHHHHH------HHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTF------AERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+||+|+...  ...++....      ....++++++|||++++|++++|++|.+.
T Consensus       107 v~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~~  160 (160)
T cd04156         107 LANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLASF  160 (160)
T ss_pred             EEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhcC
Confidence            9999998642  223333222      11234579999999999999999999763

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG4252|consensus

Probab=99.94  E-value=5.9e-28  Score=166.92  Aligned_cols=169  Identities=32%  Similarity=0.582  Sum_probs=155.6

Q ss_pred             CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625          1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY   80 (223)
Q Consensus         1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   80 (223)
                      |+|.++..+.-+|++++|..++||||++++++.+-+...+..+++.++....+.+....+...+||++|+.++..+...|
T Consensus        10 ~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAy   89 (246)
T KOG4252|consen   10 MAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAY   89 (246)
T ss_pred             CCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHH
Confidence            67777888888999999999999999999999999999999999999988888888888888999999999999999999


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      ++++.+.++||+.++..+|+....|++.+...+                                               
T Consensus        90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-----------------------------------------------  122 (246)
T KOG4252|consen   90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-----------------------------------------------  122 (246)
T ss_pred             hccccceEEEEecccHHHHHHHHHHHHHHHHHh-----------------------------------------------
Confidence            999999999999999999999998877664422                                               


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                           .++|.++|-||+|+.+...+...+.+.+++..++.++.+|++...|+..+|.+|++
T Consensus       123 -----~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae  178 (246)
T KOG4252|consen  123 -----ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE  178 (246)
T ss_pred             -----ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence                 27899999999999998999999999999999999999999999999999999875

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.94  E-value=3.2e-25  Score=160.78  Aligned_cols=158  Identities=28%  Similarity=0.471  Sum_probs=122.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ....+||+++|++||||||+++++....... ..|+.+.+..  .+.+  ....+.+||.+|+..++++|..++++++++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~--~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE--EIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE--EEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc--eeee--CcEEEEEEeccccccccccceeecccccee
Confidence            3678999999999999999999999876543 4466554443  3333  446789999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.++.+.+......+..+                                                  +......+
T Consensus        86 IfVvDssd~~~l~e~~~~L~~l--------------------------------------------------l~~~~~~~  115 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKEL--------------------------------------------------LNDPELKD  115 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHH--------------------------------------------------HTSGGGTT
T ss_pred             EEEEecccceeecccccchhhh--------------------------------------------------cchhhccc
Confidence            9999999988877776544433                                                  22222247


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHH------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAER------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|++|++||+|+.+  ....+++......      ..+.++.|||++|+|+.+.++||.+.
T Consensus       116 ~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  116 IPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             SEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             ceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence            89999999999875  3455555554432      34569999999999999999999874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00879 Sar1 Sar1 subfamily

Probab=99.94  E-value=1.5e-25  Score=164.94  Aligned_cols=157  Identities=20%  Similarity=0.329  Sum_probs=118.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ....||+++|++|||||||++++.+..+. .+.++.+..  ...+.++  ...+.+||+||+..+...+..+++++++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999987764 344554432  2333343  467899999999888888888999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++..++.....++..+.                                                  ......+.
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~--------------------------------------------------~~~~~~~~  121 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLL--------------------------------------------------SDEELANV  121 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHH--------------------------------------------------cCccccCC
Confidence            9999998877776664444331                                                  11112368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH----------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER----------------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++++||+|+..  .+..++.+.....                ..+++++|||++++|++++|++|.+.
T Consensus       122 pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         122 PFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             CEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            9999999999864  4556666665542                22468999999999999999999874

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=1.3e-25  Score=160.55  Aligned_cols=153  Identities=22%  Similarity=0.368  Sum_probs=110.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|.+|+|||||++++....+.. ..++.+.+..  .  +.+....+.+||+||+..+..++..++++++++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776643 3455444432  2  23345789999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      .+++.++.....++..+                                                  +......++|+++
T Consensus        76 ~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~piii  105 (158)
T cd04151          76 STDRDRLGTAKEELHAM--------------------------------------------------LEEEELKGAVLLV  105 (158)
T ss_pred             CCCHHHHHHHHHHHHHH--------------------------------------------------HhchhhcCCcEEE
Confidence            99887766554333221                                                  1111123689999


Q ss_pred             eecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++||+|+.+..  ...+......     ..+.+++++||+++.|++++|++|+++
T Consensus       106 v~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  158 (158)
T cd04151         106 FANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVNT  158 (158)
T ss_pred             EEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhcC
Confidence            99999986422  2233322211     123469999999999999999999864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.93  E-value=1.5e-25  Score=160.07  Aligned_cols=152  Identities=21%  Similarity=0.407  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|.+|||||||++++++... ....++.+.+...  +.+  ....+.+||+||+..+...+..++++++++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999874 3444555544332  323  35689999999999998899999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      .+++.++.....++..+..                                                  .....+.|+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~piii  105 (158)
T cd00878          76 SSDRERIEEAKEELHKLLN--------------------------------------------------EEELKGVPLLI  105 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHh--------------------------------------------------CcccCCCcEEE
Confidence            9999888887755554322                                                  11124789999


Q ss_pred             eecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ++||+|+....  ..++.......     ..++++++||+++.|++++|++|..
T Consensus       106 v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         106 FANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             EeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            99999987532  23333333322     3457999999999999999999874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.93  E-value=7.8e-25  Score=153.22  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=105.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      ++|+++|.||||||||+|+|++........|..+.+.....+.+.+  ..+.++|+||.-                    
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~y--------------------   58 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIY--------------------   58 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----S--------------------
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcc--------------------
Confidence            5899999999999999999999998777777777777666776655  578999999942                    


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      +.......+.+.  .+.+.                     ....|+++.++|++....-..      ...+....++|++
T Consensus        59 sl~~~s~ee~v~--~~~l~---------------------~~~~D~ii~VvDa~~l~r~l~------l~~ql~e~g~P~v  109 (156)
T PF02421_consen   59 SLSSKSEEERVA--RDYLL---------------------SEKPDLIIVVVDATNLERNLY------LTLQLLELGIPVV  109 (156)
T ss_dssp             SSSSSSHHHHHH--HHHHH---------------------HTSSSEEEEEEEGGGHHHHHH------HHHHHHHTTSSEE
T ss_pred             cCCCCCcHHHHH--HHHHh---------------------hcCCCEEEEECCCCCHHHHHH------HHHHHHHcCCCEE
Confidence            222222222222  11111                     135777888888776422211      2222223479999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHH
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI  219 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  219 (223)
                      +++||+|+...+.+. -+...+.+..|++++++||++++|++++++.|
T Consensus       110 vvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  110 VVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             EEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             EEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            999999998755433 35778888899999999999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.93  E-value=8.7e-25  Score=159.91  Aligned_cols=157  Identities=18%  Similarity=0.278  Sum_probs=116.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...++|+++|.+|||||||++++.+..+.. +.++.+.+  ...+..  ..+.+.+||+||+..+...+..+++++++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            456899999999999999999999876643 23443332  222333  3468899999999988889999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.++.....++..+.+                                                  .....++
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~--------------------------------------------------~~~~~~~  119 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLS--------------------------------------------------DEELATV  119 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHc--------------------------------------------------ChhhcCC
Confidence            99999998887777654443311                                                  1111368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER------------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+..  ..+.++++....-            ....+++|||++++|++++++||...
T Consensus       120 piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      120 PFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             CEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            9999999999864  3455555544311            13359999999999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PLN00023 GTP-binding protein; Provisional

Probab=99.93  E-value=1.1e-24  Score=168.03  Aligned_cols=150  Identities=24%  Similarity=0.453  Sum_probs=119.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC-------------eEEEEEEEeCCCCcccccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-------------KTIKAQIWDTAGQERYRAI   76 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~G~~~~~~~   76 (223)
                      ..+||+++|..|||||||++++.++.+...+.++++.++..+.+.+++             ..+.+++||++|++.+..+
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            358999999999999999999999998888889998888777666642             4678999999999999999


Q ss_pred             chhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625         77 TSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW  156 (223)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  156 (223)
                      +..++++++++++|||+++..+++.+..|++.+........                                       
T Consensus       100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~---------------------------------------  140 (334)
T PLN00023        100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSA---------------------------------------  140 (334)
T ss_pred             hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhccccc---------------------------------------
Confidence            99999999999999999999999999988887755321000                                       


Q ss_pred             HHHh-hhccCCCceEEEeecccchhhcc---C---CChHHHHHHHHHcCC
Q psy15625        157 LREL-RDHADQNIVIMLVGNKSDLRHLR---A---VPADEAKTFAERNNL  199 (223)
Q Consensus       157 ~~~~-~~~~~~~~p~ivv~nK~Dl~~~~---~---~~~~~~~~~~~~~~~  199 (223)
                       ... ......++|++||+||+|+...+   .   ...++.++++.++|+
T Consensus       141 -p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        141 -PLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             -ccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence             000 00011258999999999997532   2   357899999999875

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=1.3e-24  Score=171.23  Aligned_cols=161  Identities=17%  Similarity=0.083  Sum_probs=113.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----ccch---hhhcCC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----AITS---AYYRGA   84 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~---~~~~~~   84 (223)
                      ..|+|+|.||||||||+++|++........+..+..+....+.+. ....+.+||+||..+..    .+..   ..++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            369999999999999999999876544444555555555555443 23468999999964322    2222   245568


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      +++++|+|+++.++++.+..|.+++..+.+                                                 .
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~-------------------------------------------------~  268 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSP-------------------------------------------------E  268 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhh-------------------------------------------------h
Confidence            888888888877677777766555533211                                                 0


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      -.++|+++|+||+|+.+......++.+.+....+.+++++||++++|+++++++|.+.
T Consensus       269 L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~  326 (335)
T PRK12299        269 LADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWEL  326 (335)
T ss_pred             cccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            1368999999999997544333344555555667889999999999999999998764

>PTZ00099 rab6; Provisional

Probab=99.93  E-value=4e-24  Score=154.82  Aligned_cols=138  Identities=36%  Similarity=0.699  Sum_probs=120.0

Q ss_pred             CcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhc
Q psy15625         34 NEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  113 (223)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  113 (223)
                      +.+.+.+.++++.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..  
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~--   80 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN--   80 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH--
Confidence            356677889999899888888899999999999999999999999999999999999999999999999866665422  


Q ss_pred             CCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHH
Q psy15625        114 DQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTF  193 (223)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  193 (223)
                                                                       ....+.|+++|+||+|+.+.+.+..++...+
T Consensus        81 -------------------------------------------------~~~~~~piilVgNK~DL~~~~~v~~~e~~~~  111 (176)
T PTZ00099         81 -------------------------------------------------ERGKDVIIALVGNKTDLGDLRKVTYEEGMQK  111 (176)
T ss_pred             -------------------------------------------------hcCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence                                                             2223689999999999987667888888899


Q ss_pred             HHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        194 AERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       194 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +...+..++++||+++.|++++|++|++.
T Consensus       112 ~~~~~~~~~e~SAk~g~nV~~lf~~l~~~  140 (176)
T PTZ00099        112 AQEYNTMFHETSAKAGHNIKVLFKKIAAK  140 (176)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            88889999999999999999999999863

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=1.7e-24  Score=156.46  Aligned_cols=159  Identities=18%  Similarity=0.133  Sum_probs=106.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc----ccccchhh---hcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER----YRAITSAY---YRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~---~~~~~   85 (223)
                      +|+++|.+|||||||+++|.+........+..+.+.....+.+++ ...+.+|||||+.+    ...+...+   ++.+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999997654322222222233233333333 24789999999642    12233333   34588


Q ss_pred             EEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         86 GALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        86 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      ++++|+|.++. ++++.+..|.+.+.....                                                 .
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~-------------------------------------------------~  111 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNP-------------------------------------------------E  111 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCc-------------------------------------------------c
Confidence            88888888887 677777766555432110                                                 0


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..++|+++|+||+|+.+.... .+....+... .+.+++++||+++.|++++|+++.++
T Consensus       112 ~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         112 LLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             ccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            136899999999998654332 3344444545 36789999999999999999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01890 LepA LepA subfamily

Probab=99.92  E-value=3.3e-24  Score=156.24  Aligned_cols=153  Identities=22%  Similarity=0.274  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc-------cccccc------cceeeeEEEEEEE-----cCeEEEEEEEeCCCCcccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF-------NLESKS------TIGVEFATRSIQV-----DQKTIKAQIWDTAGQERYR   74 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~~~   74 (223)
                      +|+++|.+|+|||||+++|++...       ...+.+      +.+.+........     ++..+.+.+|||||+.++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            699999999999999999987421       111111      1223333333222     5567889999999999998


Q ss_pred             ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625         75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE  154 (223)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  154 (223)
                      .....+++++|++++|+|.++..+......|.                                                
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~------------------------------------------------  113 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY------------------------------------------------  113 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH------------------------------------------------
Confidence            88888999999999999998876655554221                                                


Q ss_pred             HHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC---eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL---SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         ...    ..++|+++|+||+|+.+.+  ..+....++...++   .++++||++|.|++++|++|.+.
T Consensus       114 ---~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (179)
T cd01890         114 ---LAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVER  175 (179)
T ss_pred             ---HHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhh
Confidence               111    1367999999999986421  22233455555565   48999999999999999999864

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.92  E-value=1.4e-24  Score=154.79  Aligned_cols=153  Identities=23%  Similarity=0.424  Sum_probs=115.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI   93 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (223)
                      |+++|++|||||||++++.+..+...+.++.+.+...  ...+  .+.+.+||+||+..+...+..+++.++++++|+|.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999999998888777777655533  2233  37899999999999998899999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEe
Q psy15625         94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV  173 (223)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  173 (223)
                      ++..++.....++..+..                                                  .....++|+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~p~iiv  107 (159)
T cd04159          78 ADRTALEAAKNELHDLLE--------------------------------------------------KPSLEGIPLLVL  107 (159)
T ss_pred             CCHHHHHHHHHHHHHHHc--------------------------------------------------ChhhcCCCEEEE
Confidence            988777766644443311                                                  111236899999


Q ss_pred             ecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        174 GNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       174 ~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +||+|+.+..  ..++.....     ...+++++++|++++.|+++++++|.+.
T Consensus       108 ~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  159 (159)
T cd04159         108 GNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIKH  159 (159)
T ss_pred             EeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhhC
Confidence            9999986532  122222111     1234678999999999999999999763

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.92  E-value=3.8e-24  Score=154.37  Aligned_cols=154  Identities=21%  Similarity=0.242  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch---------hhhcC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS---------AYYRG   83 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~---------~~~~~   83 (223)
                      +|+++|.+|+|||||++++++..+.....+..+.+.....  .....+.+.+|||||+.+......         .....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7999999999999999999998764332222222222222  233457899999999743111000         00112


Q ss_pred             CcEEEEEEeCCCcccH--HHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         84 AVGALLVYDIAKHLTY--ENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      .|++++|+|.++..++  +...                                                   .|+..+.
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~---------------------------------------------------~~~~~l~  108 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQL---------------------------------------------------SLFEEIK  108 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHH---------------------------------------------------HHHHHHH
Confidence            4566666666554432  2222                                                   3444443


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ... .+.|+++|+||+|+.+...+.  +...+....+.+++++||+++.|++++|+++.+.
T Consensus       109 ~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  166 (168)
T cd01897         109 PLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACEL  166 (168)
T ss_pred             hhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHH
Confidence            322 368999999999996533322  2445555567789999999999999999999864

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0073|consensus

Probab=99.92  E-value=1.3e-23  Score=143.41  Aligned_cols=157  Identities=18%  Similarity=0.361  Sum_probs=123.4

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .+..++|.++|..|+||||+++++.+.... .-.|+.+.++.+.    ..+.+.+++||.+|+...++.|..||...|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf~Iktl----~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGFQIKTL----EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccceeeEEE----EecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            344899999999999999999999998743 3336655555443    33567899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      +.|+|+++...++.....+..+..                                                  ...-.+
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~--------------------------------------------------eerlaG  117 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLV--------------------------------------------------EERLAG  117 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHh--------------------------------------------------hhhhcC
Confidence            999999998888888765554421                                                  111236


Q ss_pred             ceEEEeecccchhhccCCChH------HHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPAD------EAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~------~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      .|+++++||.|+.+  .++.+      +...++....++++-||+.+|+++.+-++|++.
T Consensus       118 ~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~  175 (185)
T KOG0073|consen  118 APLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCD  175 (185)
T ss_pred             CceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHH
Confidence            89999999999974  23333      344555667889999999999999999999874

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=4.3e-24  Score=153.33  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=101.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc---ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE---FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      .|+++|.+|||||||+++|++..   ++....+..+.+.....+.+.. ...+.+|||||+..+......+++++|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            68999999999999999999643   2222223334444444444432 4588999999998776655667889999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|..+........                                                    .+..+...  ...|
T Consensus        81 V~d~~~~~~~~~~~----------------------------------------------------~~~~~~~~--~~~~  106 (164)
T cd04171          81 VVAADEGIMPQTRE----------------------------------------------------HLEILELL--GIKR  106 (164)
T ss_pred             EEECCCCccHhHHH----------------------------------------------------HHHHHHHh--CCCc
Confidence            99987632111111                                                    00111111  1248


Q ss_pred             EEEeecccchhhccC--CChHHHHHHHHH---cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        170 IMLVGNKSDLRHLRA--VPADEAKTFAER---NNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +++++||+|+.+...  ...++..+....   .+.+++++||+++.|++++++.+.+
T Consensus       107 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         107 GLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            999999999865221  112333444433   4678999999999999999999865

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.92  E-value=2.6e-23  Score=147.94  Aligned_cols=158  Identities=40%  Similarity=0.563  Sum_probs=120.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+..++..+.+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999987777777777777776677777668899999999999988888889999999999


Q ss_pred             EeCCCc-ccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         91 YDIAKH-LTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        91 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|.... .++.... .|...+                                                   ......+.
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~  109 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEI---------------------------------------------------IHHAESNV  109 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHH---------------------------------------------------HHhcccCC
Confidence            998766 4444433 232222                                                   22222268


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL  220 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  220 (223)
                      |+++++||+|+.... ........+......+++++||+++.|+.++|++|-
T Consensus       110 p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       110 PIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             cEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            999999999996533 233333333344456799999999999999999863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=9.2e-24  Score=157.09  Aligned_cols=157  Identities=21%  Similarity=0.176  Sum_probs=102.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--h------hh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--S------AY   80 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--~------~~   80 (223)
                      ++.++|+++|++|||||||++++++..+.....+..+.+.....+.+++. ..+.+||+||..+.....  .      ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~  117 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE  117 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence            45689999999999999999999998754443344344444444444443 278999999963221100  0      11


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      +..+|++++|+|.+++.+.....                                                   .|...+
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~---------------------------------------------------~~~~~l  146 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIE---------------------------------------------------TVEKVL  146 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHH---------------------------------------------------HHHHHH
Confidence            34555555555555544443333                                                   344444


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ......++|+++|+||+|+.+....     .......+.+++++||+++.|+++++++|.+.
T Consensus       147 ~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         147 KELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             HHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence            4433346899999999998652221     13344556789999999999999999999864

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04155 Arl3 Arl3 subfamily

Probab=99.91  E-value=1.7e-23  Score=151.63  Aligned_cols=153  Identities=23%  Similarity=0.367  Sum_probs=111.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...++|+++|++|||||||++++.+..+.. ..++.+.+..  .+...  ...+.+||++|+..+...+..+++++++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            347999999999999999999999876532 3455554332  33333  467899999999888888888899999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++..++.....++..+                                                  +......++
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~  116 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVEL--------------------------------------------------LEEEKLAGV  116 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHH--------------------------------------------------HhChhhcCC
Confidence            999999877776665443322                                                  111122368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCC--------eEEEeecCCCCCHHHHHHHHHh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNL--------SFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      |+++++||+|+.+..  ..+   .+....++        +++++||++++|++++|++|++
T Consensus       117 p~ivv~nK~D~~~~~--~~~---~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         117 PVLVFANKQDLATAA--PAE---EIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             CEEEEEECCCCccCC--CHH---HHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            999999999986421  122   22333332        4789999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.91  E-value=3.5e-24  Score=150.39  Aligned_cols=134  Identities=22%  Similarity=0.238  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc-----cccccchhhhcCCcEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE-----RYRAITSAYYRGAVGA   87 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~~~~   87 (223)
                      ||+++|.+|||||||++++.+..+.  +.++.+.+       +.     -.+|||||+.     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999987652  22222211       11     1689999962     1222211 35667777


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.+++.++...                                                    .|....      .
T Consensus        67 ilv~d~~~~~s~~~~----------------------------------------------------~~~~~~------~   88 (142)
T TIGR02528        67 ALVQSATDPESRFPP----------------------------------------------------GFASIF------V   88 (142)
T ss_pred             EEEecCCCCCcCCCh----------------------------------------------------hHHHhc------c
Confidence            777776666554221                                                    222211      2


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHH
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNIL  220 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~  220 (223)
                      .|+++|+||+|+.+ +....++.++++...+. +++++||+++.|++++|+++.
T Consensus        89 ~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        89 KPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             CCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            38999999999865 33455667777777776 799999999999999999985

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=2.6e-23  Score=148.39  Aligned_cols=148  Identities=16%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             EEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc------chhhhc--CCcEE
Q psy15625         16 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI------TSAYYR--GAVGA   87 (223)
Q Consensus        16 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~~--~~~~~   87 (223)
                      ++|.+|+|||||++++++..+.....+..+.+.....+.+++  ..+.+|||||+..+...      ...++.  +++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999875554445555555555555554  47899999998766543      344453  78888


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++++|..+.+...                                                      .+...+..   .+
T Consensus        79 i~v~d~~~~~~~~------------------------------------------------------~~~~~~~~---~~  101 (158)
T cd01879          79 VNVVDATNLERNL------------------------------------------------------YLTLQLLE---LG  101 (158)
T ss_pred             EEEeeCCcchhHH------------------------------------------------------HHHHHHHH---cC
Confidence            8888877643321                                                      11111221   26


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      +|+++|+||+|+.+...+.. +...+....+.+++++||+++.|++++++++.+++
T Consensus       102 ~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         102 LPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             CCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence            89999999999976443333 34566677789999999999999999999998753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=2.7e-23  Score=149.84  Aligned_cols=155  Identities=17%  Similarity=0.227  Sum_probs=106.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      .|+++|.+|+|||||+++|.+..+.....+..+.+.....+... +....+.+|||||+..+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999988766544444433333333332 23568899999999888888888889999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.++.........                                                    +..+..   .++|++
T Consensus        82 d~~~~~~~~~~~~----------------------------------------------------~~~~~~---~~~p~i  106 (168)
T cd01887          82 AADDGVMPQTIEA----------------------------------------------------IKLAKA---ANVPFI  106 (168)
T ss_pred             ECCCCccHHHHHH----------------------------------------------------HHHHHH---cCCCEE
Confidence            9987543222210                                                    111111   368999


Q ss_pred             EeecccchhhccCC-ChHHHHHHHH------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAV-PADEAKTFAE------RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~-~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+...... ..+....+..      ..+++++++|++++.|+++++++|.+.
T Consensus       107 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (168)
T cd01887         107 VALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL  164 (168)
T ss_pred             EEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence            99999998642110 0111111111      123579999999999999999999875

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=7.5e-23  Score=161.23  Aligned_cols=160  Identities=19%  Similarity=0.128  Sum_probs=111.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----ccchhh---hcCC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----AITSAY---YRGA   84 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~~~---~~~~   84 (223)
                      ..|+++|.||||||||++++++........+..+..+....+.+++ ...+.+||+||..+..    .+...+   ++.+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4799999999999999999998765444444444555555555543 3578999999975322    233333   4468


Q ss_pred             cEEEEEEeCCCc---ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         85 VGALLVYDIAKH---LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        85 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      +++++|+|+++.   +.++.+..|.+++.....                                               
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~-----------------------------------------------  269 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP-----------------------------------------------  269 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhh-----------------------------------------------
Confidence            888888888876   456666655554422110                                               


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        ...++|+++|+||+|+.+... ..+..+.+....+.+++++||++++|+++++++|.+.
T Consensus       270 --~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~  327 (329)
T TIGR02729       270 --ELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAEL  327 (329)
T ss_pred             --hhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHH
Confidence              013689999999999865322 2334455555667889999999999999999999764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.90  E-value=3.3e-22  Score=150.33  Aligned_cols=161  Identities=42%  Similarity=0.624  Sum_probs=125.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|++|||||||++++.+..+...+.++.+..+...........+.+.+|||+|+.+++.++..++.++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999998988887777666665655578899999999999999999999999999999


Q ss_pred             EeCCCc-ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         91 YDIAKH-LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        91 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      +|.... ...+....|...+                                                   ........|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l---------------------------------------------------~~~~~~~~~  113 (219)
T COG1100          85 YDSTLRESSDELTEEWLEEL---------------------------------------------------RELAPDDVP  113 (219)
T ss_pred             EecccchhhhHHHHHHHHHH---------------------------------------------------HHhCCCCce
Confidence            999994 4455556554444                                                   333334689


Q ss_pred             EEEeecccchhhcc------------CCChHHHHHHHHHc---CCeEEEeecC--CCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLR------------AVPADEAKTFAERN---NLSFIETSAL--DSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~~~~~i~~~  222 (223)
                      +++++||+|+...+            ..............   ...++++|++  ++.++.++|..+.+.
T Consensus       114 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~  183 (219)
T COG1100         114 ILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK  183 (219)
T ss_pred             EEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHH
Confidence            99999999997643            22222222222222   3348999999  999999999887653

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=2e-22  Score=160.18  Aligned_cols=156  Identities=21%  Similarity=0.191  Sum_probs=104.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc--ccccch------hh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER--YRAITS------AY   80 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~------~~   80 (223)
                      +..++|+++|.+|||||||+|+|++..+.....+..+.++....+.+++. ..+.+|||+|...  ...+..      ..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle~  265 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLEE  265 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            34589999999999999999999998765444455556666666666433 4789999999622  111111      12


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      +..+|++++|+|.+++.+.+....                                                   |...+
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~---------------------------------------------------~~~~L  294 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEA---------------------------------------------------VEKVL  294 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHH---------------------------------------------------HHHHH
Confidence            556666677777666655544432                                                   22233


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ......++|+++|+||+|+.+..     +.... .....+++++||+++.|++++++.|.+.
T Consensus       295 ~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       295 EELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             HHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            33322468999999999986421     22221 1223468999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=1.8e-23  Score=155.24  Aligned_cols=162  Identities=22%  Similarity=0.236  Sum_probs=95.1

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc-----------cccc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE-----------RYRA   75 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-----------~~~~   75 (223)
                      .....++|+++|.+|||||||++++.+..+.....+.  .+.....+...    .+.+|||||..           .+..
T Consensus         5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence            3345689999999999999999999998765444443  34333333332    58999999942           2333


Q ss_pred             cchhhhc----CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625         76 ITSAYYR----GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE  151 (223)
Q Consensus        76 ~~~~~~~----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  151 (223)
                      ....+++    .++++++|+|.......  ...|.+.                                      +....
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~--------------------------------------~~~~~  118 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEI--IERWEGR--------------------------------------GEIPI  118 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCcccccc--ccccccC--------------------------------------CCcHH
Confidence            3333332    23455555554321110  0001000                                      00000


Q ss_pred             hhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC---------eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL---------SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      + ......+.   ..++|+++|+||+|+.+.+   .+...++....+.         +++++||++| |++++|++|.+.
T Consensus       119 ~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~  190 (201)
T PRK04213        119 D-VEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKR  190 (201)
T ss_pred             H-HHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHh
Confidence            0 01111122   2378999999999986432   3345555555554         4899999999 999999999864

>KOG0070|consensus

Probab=99.90  E-value=1.2e-22  Score=142.22  Aligned_cols=158  Identities=22%  Similarity=0.343  Sum_probs=124.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .....+|+++|..||||||++.++..+++-.. .|++|.......+    +.+++.+||.+|+..++++|..|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            45679999999999999999999998887655 6887766655443    478999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.++.+.+......+..+..                                                  .....+
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~--------------------------------------------------~~~l~~  118 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLA--------------------------------------------------EPELRN  118 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHc--------------------------------------------------CcccCC
Confidence            999999999988887644333322                                                  211247


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++.+||.|+++  ..+..++......     ....+..|+|.+|+|+.+.++++.+.
T Consensus       119 ~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~  176 (181)
T KOG0070|consen  119 APLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNN  176 (181)
T ss_pred             ceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHH
Confidence            89999999999986  3444444444332     23458889999999999999999764

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.89  E-value=4.7e-22  Score=140.29  Aligned_cols=155  Identities=46%  Similarity=0.774  Sum_probs=118.0

Q ss_pred             EEcCCCCcHHHHHHHHhhCcc-cccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC
Q psy15625         16 LIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA   94 (223)
Q Consensus        16 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (223)
                      ++|++|+|||||++++.+... .....++. .++.............+.+||+||...+......+++.++++++|+|.+
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999877 44444444 5666666666677889999999998888888888999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEee
Q psy15625         95 KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG  174 (223)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  174 (223)
                      ++.+......|..                                                  .........++|+++++
T Consensus        80 ~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~ivv~  109 (157)
T cd00882          80 DRESFENVKEWLL--------------------------------------------------LILINKEGENIPIILVG  109 (157)
T ss_pred             CHHHHHHHHHHHH--------------------------------------------------HHHHhhccCCCcEEEEE
Confidence            9888777764421                                                  11222233479999999


Q ss_pred             cccchhhccCCChHH-HHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        175 NKSDLRHLRAVPADE-AKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       175 nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ||+|+.......... ........+.+++++|++.+.|+++++++|.+
T Consensus       110 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882         110 NKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             eccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            999987643332222 34445556788999999999999999999864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00436 era GTP-binding protein Era

Probab=99.89  E-value=6.9e-22  Score=152.76  Aligned_cols=152  Identities=20%  Similarity=0.191  Sum_probs=95.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-c-------chhhhcCC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-I-------TSAYYRGA   84 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~-------~~~~~~~~   84 (223)
                      +|+++|.||||||||+|+|++..+...+....++......+...+ ...+.+|||||...... +       ...+++++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            689999999999999999999887544432222222222222222 34689999999654321 1       11234566


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      |++++|+|.++..+..  .                                                   .++..+..  
T Consensus        81 Dvvl~VvD~~~~~~~~--~---------------------------------------------------~i~~~l~~--  105 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--E---------------------------------------------------FVLTKLQN--  105 (270)
T ss_pred             CEEEEEEECCCCCchH--H---------------------------------------------------HHHHHHHh--
Confidence            6666666665543332  1                                                   22222222  


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|+++++++|.+.
T Consensus       106 -~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~  162 (270)
T TIGR00436       106 -LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVH  162 (270)
T ss_pred             -cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHh
Confidence             3689999999999864221 12233344444444 79999999999999999999865

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.1e-21  Score=158.50  Aligned_cols=154  Identities=19%  Similarity=0.189  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----ccchhh---hcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----AITSAY---YRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~~~---~~~~~   85 (223)
                      .|+|+|.||||||||++++++........+..+..+....+.++. ...+.+||+||..+..    .+...+   ++.++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            799999999999999999998775444445544554444444431 3578999999964322    222333   45578


Q ss_pred             EEEEEEeCCCc---ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         86 GALLVYDIAKH---LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        86 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      ++++|+|+++.   +.++....|.+++..                                                   
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~---------------------------------------------------  267 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKL---------------------------------------------------  267 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhh---------------------------------------------------
Confidence            88888888754   445555545444422                                                   


Q ss_pred             ccC--CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HAD--QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...  .++|++||+||+|+..    ..+....+....+.+++++||++++|+++++++|.+.
T Consensus       268 y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~  325 (424)
T PRK12297        268 YNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAEL  325 (424)
T ss_pred             hchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            211  3689999999999843    2345566666667789999999999999999998764

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.88  E-value=3.5e-22  Score=145.03  Aligned_cols=162  Identities=21%  Similarity=0.188  Sum_probs=103.6

Q ss_pred             EEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc----ccccc---hhhhcCCcEEE
Q psy15625         16 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER----YRAIT---SAYYRGAVGAL   88 (223)
Q Consensus        16 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~---~~~~~~~~~~i   88 (223)
                      ++|++|||||||+++|.+........+..+.+.......++. ...+.+||+||..+    ...+.   ...++++++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999865222222222333333333331 45789999999632    12222   23467899999


Q ss_pred             EEEeCCCc------ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         89 LVYDIAKH------LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        89 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      +|+|..+.      .++.....|...+......                                           .+. 
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~-  115 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLE-------------------------------------------TIL-  115 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhh-------------------------------------------hHH-
Confidence            99999887      4566666555544221100                                           000 


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ....++|+++|+||+|+..................+.+++++||+++.|++++++++.+.
T Consensus       116 ~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         116 GLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             HHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            001268999999999996533322222233344456789999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK15494 era GTPase Era; Provisional

Probab=99.88  E-value=1.7e-21  Score=154.69  Aligned_cols=154  Identities=23%  Similarity=0.339  Sum_probs=98.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-cccch-------h
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERY-RAITS-------A   79 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-~~~~~-------~   79 (223)
                      .+..+|+++|.+|||||||+|+|.+..+..... +..+.+.....+..+  ...+.+|||||..+. ..+..       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            456799999999999999999999988754322 111222222333333  346899999997532 22222       1


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625         80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE  159 (223)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (223)
                      .++++|++++|+|..+  ++.....                                                  .++..
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~--------------------------------------------------~il~~  155 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITH--------------------------------------------------NILDK  155 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHH--------------------------------------------------HHHHH
Confidence            2557777777777544  2222211                                                  22222


Q ss_pred             hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +..   .+.|.++|+||+|+.+.   ...+..+++...+  ..++++||++|.|++++|++|.+.
T Consensus       156 l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~  214 (339)
T PRK15494        156 LRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSK  214 (339)
T ss_pred             HHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHh
Confidence            222   24567789999998642   2445555555443  579999999999999999999864

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.88  E-value=3.8e-22  Score=147.24  Aligned_cols=147  Identities=18%  Similarity=0.211  Sum_probs=101.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh--Ccccccc------------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR--NEFNLES------------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT   77 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~   77 (223)
                      .+|+++|.+|+|||||+++|+.  ..+...+            ..+.+.+.......+.+....+.+|||||+.++....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999997  3433322            1234445555555566667889999999999999888


Q ss_pred             hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625         78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL  157 (223)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (223)
                      ..+++++|++++|+|.++... .....+                                                   +
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~~-~~~~~~---------------------------------------------------~  110 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGPM-PQTRFV---------------------------------------------------L  110 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCcc-HHHHHH---------------------------------------------------H
Confidence            999999999999999987431 111111                                                   1


Q ss_pred             HHhhhccCCCceEEEeecccchhhccC-CChHHHHHHHH-------HcCCeEEEeecCCCCCHH
Q psy15625        158 RELRDHADQNIVIMLVGNKSDLRHLRA-VPADEAKTFAE-------RNNLSFIETSALDSTNVE  213 (223)
Q Consensus       158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~  213 (223)
                      .....   .++|+++|+||+|+.+.+. ...++...+..       +.+++++++||++|.|+.
T Consensus       111 ~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891         111 KKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL  171 (194)
T ss_pred             HHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence            11111   3689999999999864221 11233444432       236789999999997663

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.88  E-value=2.1e-21  Score=138.18  Aligned_cols=145  Identities=24%  Similarity=0.265  Sum_probs=95.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc--------chhhhc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI--------TSAYYR   82 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~~   82 (223)
                      ++|+++|++|+|||||++++++..... ...+..+..+.......  ....+.+|||||..++...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            589999999999999999999876432 22233333333333333  3457899999996554321        112344


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++|+|.+++.+.....                                                   .+..    
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~---------------------------------------------------~~~~----  104 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLE---------------------------------------------------ILEL----  104 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHH---------------------------------------------------HHHh----
Confidence            555666666655544433332                                                   2221    


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        ..++|+++|+||+|+.+....       .....+.+++++||+++.|+++++++|.+.
T Consensus       105 --~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  155 (157)
T cd04164         105 --PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLEL  155 (157)
T ss_pred             --hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence              236899999999998753322       334456789999999999999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.87  E-value=1.5e-21  Score=143.28  Aligned_cols=155  Identities=22%  Similarity=0.252  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccc--------------eeeeEEEEEEEcCeEEEEEEEeCCCCccccccch
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI--------------GVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS   78 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~   78 (223)
                      +|+++|.+|+|||||+++|.+...........              +.+.......+......+.+||+||+..+.....
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            58999999999999999999887665432211              1222222222333456889999999888877788


Q ss_pred             hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625         79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR  158 (223)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  158 (223)
                      .+++.+|++++|+|...........                                                    ++.
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~~----------------------------------------------------~~~  108 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTRE----------------------------------------------------HLR  108 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHHH----------------------------------------------------HHH
Confidence            8888999999999987655332221                                                    111


Q ss_pred             HhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH--------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        159 ELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER--------------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .+..   .+.|+++++||+|+......  ..++.++....              ...+++++||+++.|++++++++.+.
T Consensus       109 ~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~  185 (189)
T cd00881         109 IARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH  185 (189)
T ss_pred             HHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence            1221   37899999999998652211  12233333332              35679999999999999999999875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.87  E-value=2.9e-21  Score=137.69  Aligned_cols=137  Identities=14%  Similarity=0.174  Sum_probs=90.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc----hhhhcCCcEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT----SAYYRGAVGAL   88 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----~~~~~~~~~~i   88 (223)
                      +|+++|.+|+|||||+|+|.+....  ...+       ....+...    .+||+||.......+    ...++++|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999998875421  1111       11222222    269999963222111    12256677777


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++..++.  .                                                   .|+..+    ..+.
T Consensus        70 ~v~d~~~~~s~~--~---------------------------------------------------~~~~~~----~~~~   92 (158)
T PRK15467         70 YVHGANDPESRL--P---------------------------------------------------AGLLDI----GVSK   92 (158)
T ss_pred             EEEeCCCccccc--C---------------------------------------------------HHHHhc----cCCC
Confidence            777766554431  1                                                   122222    1257


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCC--eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNL--SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++++||+|+.+   ...++..+++.+.++  +++++||++++|++++|+.+.++
T Consensus        93 ~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~  145 (158)
T PRK15467         93 RQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASL  145 (158)
T ss_pred             CeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHh
Confidence            8999999999864   345667777777775  89999999999999999999875

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=5.2e-21  Score=156.40  Aligned_cols=168  Identities=17%  Similarity=0.073  Sum_probs=107.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc----c---chhhhcCC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA----I---TSAYYRGA   84 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~---~~~~~~~~   84 (223)
                      ..|+|+|.||||||||+++|++........+..+..+....+.+.+  ..+.+||+||..+...    +   ....++.+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            4799999999999999999998765544445545555555554443  5789999999643211    1   12245678


Q ss_pred             cEEEEEEeCCCc----ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         85 VGALLVYDIAKH----LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        85 ~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      +++++|+|+++.    +.+..+..+.+++..+.....                                     .. ..+
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~-------------------------------------~~-~~~  279 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALD-------------------------------------GD-LGL  279 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhccc-------------------------------------cc-chh
Confidence            888888888753    234444444444432211000                                     00 000


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .  ...++|++||+||+|+.+.+.. .+.........+++++++||+++.|+++++++|.+.
T Consensus       280 ~--~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~el  338 (500)
T PRK12296        280 G--DLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAEL  338 (500)
T ss_pred             h--hhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            0  1126899999999999753322 222333334557899999999999999999998764

>PRK11058 GTPase HflX; Provisional

Probab=99.87  E-value=4.5e-21  Score=155.78  Aligned_cols=154  Identities=25%  Similarity=0.219  Sum_probs=100.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--cccchh------hhcC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY--RAITSA------YYRG   83 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--~~~~~~------~~~~   83 (223)
                      .+|+++|.+|||||||+|+|++..+.....+..+.++....+.+.+.. .+.+|||+|....  ..+...      .++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            589999999999999999999987665455555666666566565432 6789999996321  111221      2455


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|+|.+++.+...+.                                                   .|...+...
T Consensus       277 ADlIL~VvDaS~~~~~e~l~---------------------------------------------------~v~~iL~el  305 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIE---------------------------------------------------AVNTVLEEI  305 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHH---------------------------------------------------HHHHHHHHh
Confidence            66666666666655444443                                                   222222322


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...++|+++|+||+|+.+...   ....  ....+.+ ++++||++|.|+++++++|.+.
T Consensus       306 ~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~  360 (426)
T PRK11058        306 DAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTER  360 (426)
T ss_pred             ccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            224689999999999864211   1111  1123444 5889999999999999998763

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.87  E-value=4.8e-21  Score=156.44  Aligned_cols=149  Identities=21%  Similarity=0.263  Sum_probs=101.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--------hh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--------SA   79 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~   79 (223)
                      ...++|+++|.+|||||||+|+|++..... ...+..+.++....+.+++  ..+.+|||||..++....        ..
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            356899999999999999999999875422 2234444455555555544  567999999976544322        23


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625         80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE  159 (223)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (223)
                      +++.+|++++|+|.+++.+.+..  |                                                   +..
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~---------------------------------------------------l~~  305 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--L---------------------------------------------------IID  305 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--H---------------------------------------------------HHH
Confidence            56667777777777665554332  2                                                   222


Q ss_pred             hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.   ..++|+++|+||+|+.+.      +...+....+.+++++||++ .|++++|+.+.+.
T Consensus       306 ~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~  358 (442)
T TIGR00450       306 LN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQK  358 (442)
T ss_pred             Hh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHH
Confidence            22   136799999999998642      22344556678899999998 6899988887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=2.2e-21  Score=138.15  Aligned_cols=146  Identities=23%  Similarity=0.170  Sum_probs=92.4

Q ss_pred             EEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc--------cchhhhcCCc
Q psy15625         15 VLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA--------ITSAYYRGAV   85 (223)
Q Consensus        15 ~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~~   85 (223)
                      +++|.+|+|||||+++|.+..... ...+..+.+........  ....+.+|||||...+..        .....++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999875321 12222222232333323  335789999999876543        2223456677


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|+|..+..+.....                                                    ....+..   
T Consensus        79 ~ii~v~d~~~~~~~~~~~----------------------------------------------------~~~~~~~---  103 (157)
T cd01894          79 VILFVVDGREGLTPADEE----------------------------------------------------IAKYLRK---  103 (157)
T ss_pred             EEEEEEeccccCCccHHH----------------------------------------------------HHHHHHh---
Confidence            777777665433222111                                                    1111111   


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .+.|+++|+||+|+.+...    . .......+. +++++|++++.|++++|+++++.
T Consensus       104 ~~~piiiv~nK~D~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         104 SKKPVILVVNKVDNIKEED----E-AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             cCCCEEEEEECcccCChHH----H-HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence            2589999999999865221    1 233344555 78999999999999999999864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.87  E-value=5e-21  Score=130.25  Aligned_cols=94  Identities=32%  Similarity=0.549  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccc--ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFN--LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      ||+|+|.+|||||||+++|.+....  .......+.++.............+.+||++|+..+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22223334455445566677776799999999998888888889999999999


Q ss_pred             EeCCCcccHHHHHHHH
Q psy15625         91 YDIAKHLTYENVERWL  106 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~  106 (223)
                      ||++++.++..+..++
T Consensus        81 ~D~s~~~s~~~~~~~~   96 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLL   96 (119)
T ss_dssp             EECCGHHHHHHHHHHH
T ss_pred             EcCCChHHHHHHHHHH
Confidence            9999999988886543

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=8.4e-21  Score=159.41  Aligned_cols=152  Identities=18%  Similarity=0.229  Sum_probs=109.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      ..+|+++|++++|||||+++|.+..+.....+.++.+.....+..++. ..+.+|||||+..|..++...+..+|++++|
T Consensus        87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILV  165 (587)
T TIGR00487        87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLV  165 (587)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence            478999999999999999999998776655444444444444444332 2789999999999998888889999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      +|..+....+....                                                       +......++|+
T Consensus       166 Vda~dgv~~qT~e~-------------------------------------------------------i~~~~~~~vPi  190 (587)
T TIGR00487       166 VAADDGVMPQTIEA-------------------------------------------------------ISHAKAANVPI  190 (587)
T ss_pred             EECCCCCCHhHHHH-------------------------------------------------------HHHHHHcCCCE
Confidence            99876443222221                                                       11111236899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcC---------CeEEEeecCCCCCHHHHHHHHHh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNN---------LSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ++++||+|+.+   ...++........+         .+++++||++|.|++++|+++..
T Consensus       191 IVviNKiDl~~---~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       191 IVAINKIDKPE---ANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EEEEECccccc---CCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            99999999864   22333433333322         46999999999999999998854

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=4.6e-21  Score=157.35  Aligned_cols=145  Identities=26%  Similarity=0.251  Sum_probs=99.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--------hhhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--------SAYY   81 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~   81 (223)
                      .++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++  ..+.+|||||..++....        ..++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            479999999999999999999987643 22334444455455555544  578999999976543321        1245


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      +.+|++++|+|.+++.+.+...                                                   .|..   
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~---------------------------------------------------~l~~---  318 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDE---------------------------------------------------ILEE---  318 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHH---------------------------------------------------HHHh---
Confidence            6666677677666655443322                                                   2221   


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         ..++|+++|+||+|+.+.....        ...+.+++++||+++.|+++++++|.+.
T Consensus       319 ---~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~  368 (449)
T PRK05291        319 ---LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKEL  368 (449)
T ss_pred             ---cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence               2368999999999996532211        3345679999999999999999998763

>KOG0071|consensus

Probab=99.87  E-value=9.6e-21  Score=126.11  Aligned_cols=157  Identities=24%  Similarity=0.438  Sum_probs=121.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.++|+++|..++||||++.+|+-+.. ....|+.|....+    +.++.+.|++||.+|+...+++|+.|+.+..++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvet----VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEE----EEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            3578999999999999999999987653 3444666665544    3447789999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|..+.+..+....   ++                                               ...+........
T Consensus        90 FV~Dsa~~dr~eeAr~---EL-----------------------------------------------h~ii~~~em~~~  119 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARN---EL-----------------------------------------------HRIINDREMRDA  119 (180)
T ss_pred             EEEeccchhhHHHHHH---HH-----------------------------------------------HHHhCCHhhhcc
Confidence            9999998866666542   22                                               222333333478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |++|.+||.|++.  ..+.+++.....-     ..+-+.++|+.++.++.+-|.|+.+.
T Consensus       120 ~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn  176 (180)
T KOG0071|consen  120 IILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNN  176 (180)
T ss_pred             eEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhh
Confidence            9999999999986  3455666555432     23458899999999999999999865

>cd01889 SelB_euk SelB subfamily

Probab=99.86  E-value=4.5e-21  Score=141.26  Aligned_cols=156  Identities=18%  Similarity=0.137  Sum_probs=93.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC----cc---cccccccceeeeEEEEEEEc------------CeEEEEEEEeCCCCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN----EF---NLESKSTIGVEFATRSIQVD------------QKTIKAQIWDTAGQER   72 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~G~~~   72 (223)
                      ++|+++|++|+|||||+++|+..    .+   .....+..+.+.....+.+.            +....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    11   11111222233322223232            3367899999999754


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                      +..........+|++++|+|..+........                                                 
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-------------------------------------------------  111 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-------------------------------------------------  111 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHH-------------------------------------------------
Confidence            3222222344567777777776543322221                                                 


Q ss_pred             hHHHHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHH-------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAE-------RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        .+. ....   .+.|+++++||+|+.....  ...++......       ..+++++++||+++.|++++++++.+.
T Consensus       112 --~~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~  184 (192)
T cd01889         112 --CLV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL  184 (192)
T ss_pred             --HHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence              111 0111   2569999999999863211  11222222111       135789999999999999999998753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=2.5e-21  Score=160.40  Aligned_cols=156  Identities=22%  Similarity=0.224  Sum_probs=97.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----------ccc-
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----------AIT-   77 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~-   77 (223)
                      ..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++.  .+.+|||||.....          .+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999988653 233344444444455555554  56899999953211          111 


Q ss_pred             hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625         78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL  157 (223)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (223)
                      ..+++.+|++++|+|.++..+...+.                                                    ++
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~----------------------------------------------------~~  315 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR----------------------------------------------------VL  315 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH----------------------------------------------------HH
Confidence            11345555555555555544443332                                                    22


Q ss_pred             HHhhhccCCCceEEEeecccchhhccCC--ChHHHHH-HHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        158 RELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKT-FAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..+..   .++|+++|+||+|+.+....  ...+... +.....++++++||++|.|++++|+.+.+.
T Consensus       316 ~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~  380 (472)
T PRK03003        316 SMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA  380 (472)
T ss_pred             HHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            22222   37899999999999642110  1111211 122234689999999999999999998764

>KOG0096|consensus

Probab=99.86  E-value=1.5e-21  Score=136.48  Aligned_cols=166  Identities=33%  Similarity=0.592  Sum_probs=140.6

Q ss_pred             CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625          1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY   80 (223)
Q Consensus         1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   80 (223)
                      |.+++.. -+.++++++|.-|.||||+.++....++...+.++.+....+..+.-+...+++..|||.|++.+..+...+
T Consensus         1 M~~p~~~-~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgy   79 (216)
T KOG0096|consen    1 MTSPPQQ-GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGY   79 (216)
T ss_pred             CCCCccc-cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccccc
Confidence            3343333 578999999999999999999999999999999999999888877666667899999999999999999999


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      +-+..+.++.||+...-+..++..|.+++.+.+.                                              
T Consensus        80 yI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~----------------------------------------------  113 (216)
T KOG0096|consen   80 YIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE----------------------------------------------  113 (216)
T ss_pred             EEecceeEEEeeeeehhhhhcchHHHHHHHHHhc----------------------------------------------
Confidence            9999999999999999999999988777755333                                              


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                            ++|+++++||.|....+  .......+....++.++++||+++.|.+.-|-++.+
T Consensus       114 ------NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~Lar  166 (216)
T KOG0096|consen  114 ------NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLAR  166 (216)
T ss_pred             ------CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHhh
Confidence                  68999999999987632  223344555667889999999999999999988875

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=5.1e-20  Score=139.08  Aligned_cols=194  Identities=22%  Similarity=0.187  Sum_probs=111.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-------ccchhhhcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-------AITSAYYRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~   85 (223)
                      +|+++|.+|+|||||+++|++........+..+.+.....+.++  ...+++||+||..+..       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            78999999999999999999876544433444444545554444  3578999999975432       12235689999


Q ss_pred             EEEEEEeCCCccc-HHHHHHHHHHHHHh---cCCceeEEEeCCC---------------ccccccc---cccceeEEEee
Q psy15625         86 GALLVYDIAKHLT-YENVERWLRELRDH---ADQNIVIMLVGPP---------------SLLRRYY---RGAVGALLVYD  143 (223)
Q Consensus        86 ~~i~v~d~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------~~~~~~~---~~~~~~~~~~d  143 (223)
                      ++++|+|.++... ...+...++...-.   ....+.+.-....               ......+   +-..+.+   -
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v---~  156 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV---L  156 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE---E
Confidence            9999999987553 33332222221111   1111111110000               0011111   1111111   1


Q ss_pred             cccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .....+.+++...+   .. ....+|+++|+||+|+.     ..++...++..  ..++++||+++.|++++|+.+.+.
T Consensus       157 ~~~~~~~~~~~~~~---~~-~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~  224 (233)
T cd01896         157 IREDITVDDLIDVI---EG-NRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDK  224 (233)
T ss_pred             EccCCCHHHHHHHH---hC-CceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHH
Confidence            12223333333222   11 12368999999999984     33444455443  358999999999999999998763

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.86  E-value=1.2e-20  Score=159.19  Aligned_cols=155  Identities=23%  Similarity=0.284  Sum_probs=111.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc-------cccccc------ccceeeeEEEEEEE-----cCeEEEEEEEeCCCCcc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE-------FNLESK------STIGVEFATRSIQV-----DQKTIKAQIWDTAGQER   72 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~~   72 (223)
                      ..+|+++|+.++|||||+++|+...       +...+.      ...+.++......+     ++..+.+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4689999999999999999998742       111111      12244444433333     45568999999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                      +......+++.+|++++|+|.++..+.+....|..                                             
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~---------------------------------------------  117 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYL---------------------------------------------  117 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHH---------------------------------------------
Confidence            98888889999999999999988776665543211                                             


Q ss_pred             hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC---eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL---SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                            ...    .++|+++|+||+|+.+..  ..+...++....+.   .++++||++|.|++++|++|.+.
T Consensus       118 ------~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~  178 (595)
T TIGR01393       118 ------ALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKR  178 (595)
T ss_pred             ------HHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHh
Confidence                  111    267999999999986421  12223445555555   48999999999999999999764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=4.2e-21  Score=159.00  Aligned_cols=151  Identities=25%  Similarity=0.243  Sum_probs=95.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc--------ccccchhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER--------YRAITSAY   80 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~   80 (223)
                      ...+|+|+|.+|||||||+|+|++..... ...+..+.+........+  ...+.+|||||...        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~--~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN--GRRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC--CcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            34789999999999999999999876532 222333333333333333  34689999999652        11223345


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      ++.+|++++|+|.++..+... .                                                   .+...+
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~---------------------------------------------------~i~~~l  142 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-E---------------------------------------------------AVARVL  142 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-H---------------------------------------------------HHHHHH
Confidence            667777777777766544321 1                                                   112222


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..   .++|+++|+||+|+....   .+..+.+  ..++ ..+++||++|.|++++|++|++.
T Consensus       143 ~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~  197 (472)
T PRK03003        143 RR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAA  197 (472)
T ss_pred             HH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence            21   368999999999986421   1121222  2333 35799999999999999998864

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=9.3e-21  Score=152.27  Aligned_cols=157  Identities=20%  Similarity=0.124  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc----cc---hhhhcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA----IT---SAYYRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~~---~~~~~~~~   85 (223)
                      .|+|+|.||||||||+|+|++.+......+..+.......+.... ...+.++|+||..+...    +.   ...++.++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            699999999999999999998875444445544445454554432 23689999999654221    11   12366777


Q ss_pred             EEEEEEeCC---CcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         86 GALLVYDIA---KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        86 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      ++++|+|++   +.+..+....|.+++                                                   ..
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL---------------------------------------------------~~  268 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINEL---------------------------------------------------EK  268 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHH---------------------------------------------------Hh
Confidence            777777776   333444444444433                                                   22


Q ss_pred             ccC--CCceEEEeecccchhhccCCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HAD--QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...  .++|+++|+||+|+.+...+ .+..+.+....+  .+++++||+++.|++++++.|.+.
T Consensus       269 ~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~  331 (390)
T PRK12298        269 YSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTF  331 (390)
T ss_pred             hhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHH
Confidence            211  25799999999998643222 233444444444  368999999999999999998764

>KOG3883|consensus

Probab=99.86  E-value=2.7e-20  Score=125.82  Aligned_cols=161  Identities=24%  Similarity=0.377  Sum_probs=130.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccccc--ccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccc-cccchhhhcCCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERY-RAITSAYYRGAV   85 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~-~~~~~~~~~~~~   85 (223)
                      +.-||+++|..++|||.++..+........  +.++++..| ...+.. .+.+..+.++||.|...+ ..+.+.|++-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            457999999999999999999987665444  336665333 444433 466778999999996655 778889999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++||+..++++|+.+.....++..+.+                                                  .
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~Kd--------------------------------------------------K  116 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKD--------------------------------------------------K  116 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccc--------------------------------------------------c
Confidence            99999999999999999754443333222                                                  2


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ..+|+++++||+|+.+++++..+....|+.+..++.+++++.....+-+.|.+++.
T Consensus       117 KEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~  172 (198)
T KOG3883|consen  117 KEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLAS  172 (198)
T ss_pred             ccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHH
Confidence            36899999999999998999999999999999999999999999999999988764

>cd01895 EngA2 EngA2 subfamily

Probab=99.86  E-value=1.4e-20  Score=136.09  Aligned_cols=155  Identities=23%  Similarity=0.241  Sum_probs=94.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccc-cccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc-----------ch
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI-----------TS   78 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-----------~~   78 (223)
                      +++|+++|.+|+|||||++++++....... .+..+.......+..++  ..+.+||+||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            578999999999999999999987643222 22222223223333333  35789999996543110           01


Q ss_pred             hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625         79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR  158 (223)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  158 (223)
                      ..++.+|++++|+|..++.+.....                                                    +..
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~----------------------------------------------------~~~  107 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR----------------------------------------------------IAG  107 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH----------------------------------------------------HHH
Confidence            1344556666666655544432221                                                    111


Q ss_pred             HhhhccCCCceEEEeecccchhhccCCChHHHHH-HHHHc----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT-FAERN----NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .+.   ..+.|+++++||+|+.+.+....++... +....    +.+++++||+++.|++++++.+.++
T Consensus       108 ~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         108 LIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             HHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            111   1368999999999987532222222222 22222    3679999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.1e-20  Score=155.44  Aligned_cols=156  Identities=23%  Similarity=0.220  Sum_probs=96.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccc-cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc----------
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT----------   77 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----------   77 (223)
                      ...++|+++|.+|+|||||+++|++....... .+..+.+.....+..++  ..+.+|||||........          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            34689999999999999999999987643222 23333333333333433  378999999975544322          


Q ss_pred             -hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625         78 -SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW  156 (223)
Q Consensus        78 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  156 (223)
                       ..+++.+|++++|+|.++..+.....                                                    +
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~----------------------------------------------------~  275 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR----------------------------------------------------I  275 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH----------------------------------------------------H
Confidence             12355566666666665544433221                                                    1


Q ss_pred             HHHhhhccCCCceEEEeecccchhhccCCChHHHHHHH-HH----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-ER----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +..+..   .++|+++|+||+|+.. .....++..... ..    .+++++++||++|.|++++|+++.+.
T Consensus       276 ~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~  342 (429)
T TIGR03594       276 AGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV  342 (429)
T ss_pred             HHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            222221   3689999999999862 111112222221 11    24789999999999999999998764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0075|consensus

Probab=99.86  E-value=4.3e-21  Score=128.76  Aligned_cols=153  Identities=24%  Similarity=0.417  Sum_probs=122.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      ...+.++|..++|||||+|.+..+.+.+...|+.|.+...    +....+.+.+||.+|+..++.+|..|.+++++++++
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            5678999999999999999999988888888888866544    556778999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      +|..+++........+..+                                                  +....-.++|+
T Consensus        96 VDaad~~k~~~sr~EL~~L--------------------------------------------------L~k~~l~gip~  125 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDL--------------------------------------------------LDKPSLTGIPL  125 (186)
T ss_pred             eecCCcccchhhHHHHHHH--------------------------------------------------hcchhhcCCcE
Confidence            9999988776665333322                                                  23333358999


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcC--------CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNN--------LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|++||.|+++  ..+..   .+..+.|        +..+.+|++...|++.+.+||++-
T Consensus       126 LVLGnK~d~~~--AL~~~---~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h  180 (186)
T KOG0075|consen  126 LVLGNKIDLPG--ALSKI---ALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH  180 (186)
T ss_pred             EEecccccCcc--cccHH---HHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence            99999999875  22222   2333334        358999999999999999999863

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.85  E-value=1.2e-20  Score=139.47  Aligned_cols=163  Identities=18%  Similarity=0.175  Sum_probs=96.7

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc----------c
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY----------R   74 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~   74 (223)
                      +...+..++|+++|.+|+|||||++++++..+.....++.+.+........   ...+.+|||||....          .
T Consensus        18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~   94 (196)
T PRK00454         18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ   94 (196)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence            344556789999999999999999999987644444455444433332222   257899999995321          1


Q ss_pred             ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625         75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE  154 (223)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  154 (223)
                      .+...+++.++                                                .++++++++|.+.+.+.... 
T Consensus        95 ~~~~~~~~~~~------------------------------------------------~~~~~~~v~d~~~~~~~~~~-  125 (196)
T PRK00454         95 KLIEEYLRTRE------------------------------------------------NLKGVVLLIDSRHPLKELDL-  125 (196)
T ss_pred             HHHHHHHHhCc------------------------------------------------cceEEEEEEecCCCCCHHHH-
Confidence            11122222221                                                12334444444433222210 


Q ss_pred             HHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .....+.   ..++|+++++||+|+.+..+.  ..+++.........+++++||++++|++++++.|.++
T Consensus       126 ~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  192 (196)
T PRK00454        126 QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKW  192 (196)
T ss_pred             HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHH
Confidence            1111111   136899999999998542211  1122333433346789999999999999999998765

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=2.8e-20  Score=156.94  Aligned_cols=145  Identities=19%  Similarity=0.193  Sum_probs=102.9

Q ss_pred             cCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc------chhhh--cCCcEEEE
Q psy15625         18 GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI------TSAYY--RGAVGALL   89 (223)
Q Consensus        18 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~~~~i~   89 (223)
                      |.+|||||||+|++++......+.+..+.+.....+..++  ..+.+||+||+.++...      ...++  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999877555556655555555555544  46799999998766543      12222  35677777


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.++.+...                                                      .+...+.   ..++|
T Consensus        79 VvDat~ler~l------------------------------------------------------~l~~ql~---~~~~P  101 (591)
T TIGR00437        79 VVDASNLERNL------------------------------------------------------YLTLQLL---ELGIP  101 (591)
T ss_pred             EecCCcchhhH------------------------------------------------------HHHHHHH---hcCCC
Confidence            77766532210                                                      1111111   23689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+. .+.+.+.++.|++++++||++++|++++++.+.+.
T Consensus       102 iIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437       102 MILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             EEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999997654443 45678888889999999999999999999999764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04163 Era Era subfamily

Probab=99.85  E-value=6.2e-20  Score=131.72  Aligned_cols=156  Identities=20%  Similarity=0.169  Sum_probs=96.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--------hhhhc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--------SAYYR   82 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~~~   82 (223)
                      ..+|+++|.+|+|||||++++.+............... ............+.+||+||........        ...+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec-eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998765433322222211 1112233345678999999965433221        12355


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++++|..++.+                                                   ... ..+...+..
T Consensus        82 ~~d~i~~v~d~~~~~~---------------------------------------------------~~~-~~~~~~~~~  109 (168)
T cd04163          82 DVDLVLFVVDASEPIG---------------------------------------------------EGD-EFILELLKK  109 (168)
T ss_pred             hCCEEEEEEECCCccC---------------------------------------------------chH-HHHHHHHHH
Confidence            5566666666655411                                                   110 011122221


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         .+.|+++++||+|+........+....+.... ..+++++|++++.+++++++.|.+.
T Consensus       110 ---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         110 ---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             ---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence               25799999999998742222233333443334 3679999999999999999999874

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG1673|consensus

Probab=99.85  E-value=1.2e-20  Score=127.75  Aligned_cols=160  Identities=29%  Similarity=0.537  Sum_probs=136.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .-++||.++|.+..|||||+-++.++...+.+..+.|.++..+++.+.+..+.+.+||.+|+.++.++......++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            34799999999999999999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +.||+++++++.++..|+++.+....                                                   .-+
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~Nk---------------------------------------------------tAi  126 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNK---------------------------------------------------TAI  126 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCC---------------------------------------------------ccc
Confidence            99999999999999988887744211                                                   235


Q ss_pred             eEEEeecccchh-----hccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625        169 VIMLVGNKSDLR-----HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL  220 (223)
Q Consensus       169 p~ivv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  220 (223)
                      |+ +|++|.|.-     +.++....+.+..++..+++.++||+...-|+.++|..+.
T Consensus       127 Pi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vl  182 (205)
T KOG1673|consen  127 PI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVL  182 (205)
T ss_pred             eE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHH
Confidence            65 579999963     2333344567777788899999999999999999997653

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.85  E-value=1e-20  Score=137.88  Aligned_cols=155  Identities=21%  Similarity=0.239  Sum_probs=93.4

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc---------
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR---------   74 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------   74 (223)
                      .+.+.+...+|+++|.+|+|||||++++++..+.....++.+.+.....+..+.   .+.+||+||.....         
T Consensus        11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~   87 (179)
T TIGR03598        11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKW   87 (179)
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHH
Confidence            345567788999999999999999999998864333334444444443333332   68999999953211         


Q ss_pred             -ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625         75 -AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV  153 (223)
Q Consensus        75 -~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  153 (223)
                       .+...+++.+                                                ..++++++++|++.+.+....
T Consensus        88 ~~~~~~~l~~~------------------------------------------------~~~~~ii~vvd~~~~~~~~~~  119 (179)
T TIGR03598        88 QKLIEEYLEKR------------------------------------------------ENLKGVVLLMDIRHPLKELDL  119 (179)
T ss_pred             HHHHHHHHHhC------------------------------------------------hhhcEEEEEecCCCCCCHHHH
Confidence             0111111110                                                124555666665554443332


Q ss_pred             HHHHHHhhhccCCCceEEEeecccchhhcc--CCChHHHHHHHHHcC--CeEEEeecCCCCCHH
Q psy15625        154 ERWLRELRDHADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAERNN--LSFIETSALDSTNVE  213 (223)
Q Consensus       154 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~  213 (223)
                       ..+..+..   .++|+++++||+|+.+..  ....++++......+  .+++++||++++|++
T Consensus       120 -~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       120 -EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             -HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence             11222322   368999999999985421  122344555555543  479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=6.5e-20  Score=158.21  Aligned_cols=164  Identities=15%  Similarity=0.129  Sum_probs=105.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .++|+++|.||||||||+|++++........  .+.+...+...+......+.+||+||..++.....            
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~------------   68 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISS------------   68 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccc------------
Confidence            4789999999999999999999887644444  44555555555566667899999999765442111            


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                           ..+.++.. ..+.+                     ....+|+++.++|+++.....   .+...+.+   .++|+
T Consensus        69 -----~~s~~E~i-~~~~l---------------------~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPv  115 (772)
T PRK09554         69 -----QTSLDEQI-ACHYI---------------------LSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPC  115 (772)
T ss_pred             -----cccHHHHH-HHHHH---------------------hccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCE
Confidence                 00000000 00000                     001344444444444322111   12222222   37899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++++||+|+.+.+.+ ..+.+++.++.|++++++||++++|++++++.+.+.
T Consensus       116 IvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~  166 (772)
T PRK09554        116 IVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRH  166 (772)
T ss_pred             EEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence            999999998764444 456778888899999999999999999999988653

>PRK00089 era GTPase Era; Reviewed

Probab=99.85  E-value=6e-20  Score=143.78  Aligned_cols=157  Identities=22%  Similarity=0.229  Sum_probs=96.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc--------chhhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI--------TSAYY   81 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~   81 (223)
                      ..-.|+++|.||||||||+|+|++...........++......+ .......+.+|||||.......        ....+
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i-~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGI-VTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEE-EEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            45679999999999999999999988755443332222222222 2223368999999996543211        11234


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      ..+|++++++|.++..                                                   +... ...+..+.
T Consensus        83 ~~~D~il~vvd~~~~~---------------------------------------------------~~~~-~~i~~~l~  110 (292)
T PRK00089         83 KDVDLVLFVVDADEKI---------------------------------------------------GPGD-EFILEKLK  110 (292)
T ss_pred             hcCCEEEEEEeCCCCC---------------------------------------------------ChhH-HHHHHHHh
Confidence            4555555555555421                                                   1111 11112222


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         ..+.|+++|+||+|+........+....+....+ .+++++||+++.|++++++++.+.
T Consensus       111 ---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~  169 (292)
T PRK00089        111 ---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKY  169 (292)
T ss_pred             ---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHh
Confidence               2368999999999986322222334444444333 579999999999999999998764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.85  E-value=3e-20  Score=158.39  Aligned_cols=155  Identities=19%  Similarity=0.238  Sum_probs=109.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeee--EEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF--ATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ...+|+++|..++|||||+++|....+.....+.++.+.  ....+..++....+.+|||||+..|..++..+++.+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            457899999999999999999998776544333333222  222233334557899999999999999998899999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|..+....+....+                                                    ..+   ...+
T Consensus       323 ILVVDA~dGv~~QT~E~I----------------------------------------------------~~~---k~~~  347 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAI----------------------------------------------------NYI---QAAN  347 (742)
T ss_pred             EEEEECcCCCChhhHHHH----------------------------------------------------HHH---HhcC
Confidence            999998775433222211                                                    111   1236


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHH-------HHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFA-------ERNN--LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~-------~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++++||+|+.+.   ..+++.+..       ..++  ++++++||++|.|+++++++|...
T Consensus       348 iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l  408 (742)
T CHL00189        348 VPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLL  408 (742)
T ss_pred             ceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence            899999999998652   222222222       2223  689999999999999999998753

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.84  E-value=4.4e-20  Score=155.67  Aligned_cols=154  Identities=19%  Similarity=0.192  Sum_probs=108.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc---ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE---FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      +.|+++|.+++|||||+++|++..   ++....+.++.+.....+..++  ..+.+||+||+..+.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999743   3334445555555555555544  68899999999888777777888999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++....+..+    .                                                +..+..   .++
T Consensus        79 LVVDa~~G~~~qT~e----h------------------------------------------------l~il~~---lgi  103 (581)
T TIGR00475        79 LVVDADEGVMTQTGE----H------------------------------------------------LAVLDL---LGI  103 (581)
T ss_pred             EEEECCCCCcHHHHH----H------------------------------------------------HHHHHH---cCC
Confidence            999998743211111    0                                                011111   256


Q ss_pred             e-EEEeecccchhhccCC--ChHHHHHHHHHc----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 V-IMLVGNKSDLRHLRAV--PADEAKTFAERN----NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      | +++|+||+|+.+...+  ..++.+.+....    +++++++||++|.|++++++.+.+.
T Consensus       104 ~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l  164 (581)
T TIGR00475       104 PHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL  164 (581)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence            6 9999999998653322  233455555543    5789999999999999999988653

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.84  E-value=1.2e-19  Score=155.90  Aligned_cols=152  Identities=18%  Similarity=0.226  Sum_probs=107.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ....|+++|..++|||||+++|.+..+.......++.+.....+..+  ...+.+|||||+..|..++...++.+|++++
T Consensus       289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            35789999999999999999999877765444443333333333333  3578999999999999988888899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|..+....+....                                                       +......++|
T Consensus       367 VVdAddGv~~qT~e~-------------------------------------------------------i~~a~~~~vP  391 (787)
T PRK05306        367 VVAADDGVMPQTIEA-------------------------------------------------------INHAKAAGVP  391 (787)
T ss_pred             EEECCCCCCHhHHHH-------------------------------------------------------HHHHHhcCCc
Confidence            999877533222221                                                       1111123689


Q ss_pred             EEEeecccchhhccCCChHHHHH-------HHHHcC--CeEEEeecCCCCCHHHHHHHHHh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKT-------FAERNN--LSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ++|++||+|+.+.   ..+....       +...++  ++++++||++|.|++++|++|..
T Consensus       392 iIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        392 IIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             EEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence            9999999998642   2222221       122233  67999999999999999999863

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=1.2e-19  Score=149.64  Aligned_cols=148  Identities=24%  Similarity=0.205  Sum_probs=94.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--------cccchhhhc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY--------RAITSAYYR   82 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~   82 (223)
                      .+|+++|.+|||||||+|+|.+..... ...+..+.+........++  ..+.+|||||+...        ......+++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999876532 2223333344444444444  68899999997651        111223455


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++|+|..+..+.....                                                 +..|+..   
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~-------------------------------------------------~~~~l~~---  107 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEE-------------------------------------------------IAKILRK---  107 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHH-------------------------------------------------HHHHHHH---
Confidence            666666666655433221111                                                 1122221   


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                         .++|+++|+||+|+.+.    .+...++ ...++. ++++||+++.|++++++.+.+
T Consensus       108 ---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        108 ---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             ---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence               26899999999996541    1222222 345654 899999999999999999875

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.83  E-value=7.8e-20  Score=135.65  Aligned_cols=157  Identities=21%  Similarity=0.181  Sum_probs=95.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccc---ccccccceeeeEEEEEEEc---------------------------C----
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVEFATRSIQVD---------------------------Q----   57 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~---------------------------~----   57 (223)
                      ++|+++|+.|+|||||+.++.+....   .......+.......+...                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            47999999999999999999765211   1111111111110000000                           0    


Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccc
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAV  136 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (223)
                      ....+.+|||||+..+..........+|++++|+|..++. ......                                 
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~---------------------------------  127 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSE---------------------------------  127 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHH---------------------------------
Confidence            1157899999998777666666677788999999987631 111111                                 


Q ss_pred             eeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH---cCCeEEEeecCCCCC
Q psy15625        137 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER---NNLSFIETSALDSTN  211 (223)
Q Consensus       137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~  211 (223)
                                         .+..+...  ...|+++|+||+|+.+....  ..++.+.+...   .+++++++||+++.|
T Consensus       128 -------------------~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~g  186 (203)
T cd01888         128 -------------------HLAALEIM--GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYN  186 (203)
T ss_pred             -------------------HHHHHHHc--CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCC
Confidence                               01111111  12478999999998642111  11233333332   256799999999999


Q ss_pred             HHHHHHHHHhh
Q psy15625        212 VETAFQNILTA  222 (223)
Q Consensus       212 i~~~~~~i~~~  222 (223)
                      ++++|++|.+.
T Consensus       187 i~~L~~~l~~~  197 (203)
T cd01888         187 IDVLLEYIVKK  197 (203)
T ss_pred             HHHHHHHHHHh
Confidence            99999999764

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=2.6e-19  Score=134.97  Aligned_cols=164  Identities=21%  Similarity=0.193  Sum_probs=106.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ++--|+++|.||||||||+|++.+.+....+....++......+.. ....++.++||||.+........++-       
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t-~~~~QiIfvDTPGih~pk~~l~~~m~-------   76 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT-TDNAQIIFVDTPGIHKPKHALGELMN-------   76 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-cCCceEEEEeCCCCCCcchHHHHHHH-------
Confidence            4567999999999999999999999998888766655554444433 34668999999996543322211100       


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                                   .                       .....+..+|+++++.|+.++....+ +..++.+..   .+.|
T Consensus        77 -------------~-----------------------~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~p  116 (298)
T COG1159          77 -------------K-----------------------AARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTP  116 (298)
T ss_pred             -------------H-----------------------HHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCC
Confidence                         0                       01122345666666666666555544 122333333   3679


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +++++||+|...+..........+..... ..++++||+++.|++.+.+.+..
T Consensus       117 vil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~  169 (298)
T COG1159         117 VILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKE  169 (298)
T ss_pred             eEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHH
Confidence            99999999986543311222222222233 36999999999999999998765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=1.3e-19  Score=149.27  Aligned_cols=148  Identities=24%  Similarity=0.208  Sum_probs=91.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--------cccchhhhcC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY--------RAITSAYYRG   83 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~   83 (223)
                      +|+++|.+|||||||+|+|++...... ..+..+.+........+  ...+.+|||||....        ......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG--GREFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC--CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998764322 22333333333333333  346899999996321        1222233445


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|+|..                                                   .+.+..+. .+...+.. 
T Consensus        79 ad~vl~vvD~~---------------------------------------------------~~~~~~d~-~i~~~l~~-  105 (429)
T TIGR03594        79 ADVILFVVDGR---------------------------------------------------EGLTPEDE-EIAKWLRK-  105 (429)
T ss_pred             CCEEEEEEeCC---------------------------------------------------CCCCHHHH-HHHHHHHH-
Confidence            55555555544                                                   43333221 11111222 


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        .++|+++|+||+|+.+....    ... ..+.++ +++++||+++.|+.++++.+.+.
T Consensus       106 --~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~  158 (429)
T TIGR03594       106 --SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILEL  158 (429)
T ss_pred             --hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHh
Confidence              26899999999998653321    112 335566 69999999999999999998753

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd00880 Era_like Era (E

Probab=99.82  E-value=4.2e-19  Score=126.32  Aligned_cols=151  Identities=20%  Similarity=0.174  Sum_probs=96.7

Q ss_pred             EEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch-------hhhcCCcEE
Q psy15625         16 LIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS-------AYYRGAVGA   87 (223)
Q Consensus        16 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~~~~~~~~   87 (223)
                      ++|++|+|||||++++.+.... .......+............ ...+.+||+||.........       .+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987655 22333323333333322221 45889999999776554333       356667777


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++++|..+........ +                                                   ....   ...+
T Consensus        80 l~v~~~~~~~~~~~~~-~---------------------------------------------------~~~~---~~~~  104 (163)
T cd00880          80 LFVVDADLRADEEEEK-L---------------------------------------------------LELL---RERG  104 (163)
T ss_pred             EEEEeCCCCCCHHHHH-H---------------------------------------------------HHHH---HhcC
Confidence            7777776655543332 1                                                   1111   1237


Q ss_pred             ceEEEeecccchhhccCCChH---HHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPAD---EAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++|+||+|+.........   .........+.+++++|++++.|++++++++.+.
T Consensus       105 ~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         105 KPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             CeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            899999999998653322111   1122223346789999999999999999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.82  E-value=6.8e-20  Score=134.50  Aligned_cols=158  Identities=23%  Similarity=0.293  Sum_probs=104.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccccc------------------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE------------------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      +.++|+++|+.++|||||+++|........                  .....+.......+........+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            468999999999999999999986542111                  01112222222222212566789999999998


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE  151 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  151 (223)
                      ++.......++.+|++++|+|..+........                                                
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~------------------------------------------------  113 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE------------------------------------------------  113 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH------------------------------------------------
T ss_pred             ceeecccceecccccceeeeeccccccccccc------------------------------------------------
Confidence            88877777788999999999988664432222                                                


Q ss_pred             hhHHHHHHhhhccCCCceEEEeecccchhhccC-CChHHHH-HHHHHc------CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLRA-VPADEAK-TFAERN------NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                          .+..+..   .++|+++|+||+|+...+. ...++.. .+.+..      .++++++||++|.|++++++.|.+.
T Consensus       114 ----~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~  185 (188)
T PF00009_consen  114 ----HLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVEL  185 (188)
T ss_dssp             ----HHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             ----ccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence                1112222   3788999999999863111 0111222 332322      2579999999999999999999864

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.82  E-value=3.5e-19  Score=132.05  Aligned_cols=93  Identities=24%  Similarity=0.361  Sum_probs=68.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC-cEEEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA-VGALLVY   91 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~-~~~i~v~   91 (223)
                      +|+++|++|||||||+++|....+.....+. +...........+....+.+||+||+..+......+++.+ +++++|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998775554322 2222222221124456799999999999988888889998 9999999


Q ss_pred             eCCCc-ccHHHHHHHH
Q psy15625         92 DIAKH-LTYENVERWL  106 (223)
Q Consensus        92 d~~~~-~~~~~~~~~~  106 (223)
                      |..+. .++..+..++
T Consensus        81 D~~~~~~~~~~~~~~l   96 (203)
T cd04105          81 DSATFQKNLKDVAEFL   96 (203)
T ss_pred             ECccchhHHHHHHHHH
Confidence            99987 5566555443

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=3.4e-19  Score=146.89  Aligned_cols=154  Identities=23%  Similarity=0.248  Sum_probs=93.0

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc----------
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT----------   77 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----------   77 (223)
                      ...++|+++|.+|+|||||++++++...... ..+.  ++.......+......+.+|||||........          
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG--TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--ceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3579999999999999999999998754322 2233  33333222232334567899999964433221          


Q ss_pred             -hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625         78 -SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW  156 (223)
Q Consensus        78 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  156 (223)
                       ..+++.+|++++|+|.+                                                   .+.+..+. ..
T Consensus       249 ~~~~~~~ad~~ilViD~~---------------------------------------------------~~~~~~~~-~i  276 (435)
T PRK00093        249 TLKAIERADVVLLVIDAT---------------------------------------------------EGITEQDL-RI  276 (435)
T ss_pred             HHHHHHHCCEEEEEEeCC---------------------------------------------------CCCCHHHH-HH
Confidence             11334445555555544                                                   44333332 11


Q ss_pred             HHHhhhccCCCceEEEeecccchhhccCCChHHHH-HHHH----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK-TFAE----RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ...+..   .++|+++++||+|+.+...  .++.. .+..    ...++++++||+++.|++++++.+.+
T Consensus       277 ~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~  341 (435)
T PRK00093        277 AGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDE  341 (435)
T ss_pred             HHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence            222222   3689999999999863211  11111 1111    23578999999999999999998875

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.82  E-value=6.2e-19  Score=148.99  Aligned_cols=157  Identities=20%  Similarity=0.262  Sum_probs=108.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcc--cc-----cc------cccceeeeEEEEEEE-----cCeEEEEEEEeCCCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEF--NL-----ES------KSTIGVEFATRSIQV-----DQKTIKAQIWDTAGQ   70 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~   70 (223)
                      +...+++++|+.++|||||+.+|+...-  ..     ..      ....+.++......+     ++..+.+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            3457899999999999999999986321  10     00      012233333333222     445788999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccch
Q psy15625         71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTY  150 (223)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  150 (223)
                      .++...+..+++.+|++++|+|.++..+.+....|                                             
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~---------------------------------------------  119 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV---------------------------------------------  119 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH---------------------------------------------
Confidence            99988888899999999999999887655444322                                             


Q ss_pred             hhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe---EEEeecCCCCCHHHHHHHHHhh
Q psy15625        151 ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS---FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                            ....    ..++|+++|+||+|+.+..  ......++....++.   ++++||++|.|+++++++|.+.
T Consensus       120 ------~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~  182 (600)
T PRK05433        120 ------YLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVER  182 (600)
T ss_pred             ------HHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHh
Confidence                  1111    1268999999999986421  122233444444543   8999999999999999999764

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.82  E-value=5.4e-19  Score=140.66  Aligned_cols=159  Identities=23%  Similarity=0.230  Sum_probs=109.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      .-+|++++|.||||||||+|+|.+.......+ -.|++.+.....++-.++++.+.||+|..+..+..            
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd-I~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~V------------  282 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD-IAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVV------------  282 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecC-CCCCccceEEEEEEECCEEEEEEecCCcccCccHH------------
Confidence            45899999999999999999999988766653 23455555555555566789999999965443322            


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                              ....+++.+..+                       +.+|.+++++|++.+.+..+....    . ....++|
T Consensus       283 --------E~iGIeRs~~~i-----------------------~~ADlvL~v~D~~~~~~~~d~~~~----~-~~~~~~~  326 (454)
T COG0486         283 --------ERIGIERAKKAI-----------------------EEADLVLFVLDASQPLDKEDLALI----E-LLPKKKP  326 (454)
T ss_pred             --------HHHHHHHHHHHH-----------------------HhCCEEEEEEeCCCCCchhhHHHH----H-hcccCCC
Confidence                    223333333333                       347888888888887555442221    1 3345789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|.||+|+.......     .+....+.+++.+|+++++|++.+.+.|.+.
T Consensus       327 ~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~  374 (454)
T COG0486         327 IIVVLNKADLVSKIELE-----SEKLANGDAIISISAKTGEGLDALREAIKQL  374 (454)
T ss_pred             EEEEEechhcccccccc-----hhhccCCCceEEEEecCccCHHHHHHHHHHH
Confidence            99999999997633211     1122334468999999999999999988764

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=4.9e-19  Score=140.55  Aligned_cols=157  Identities=22%  Similarity=0.169  Sum_probs=103.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      ..|+++|.||||||||+|+|++.......+ ..|.+.+...-........|.++||+|.....                 
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D-~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-----------------   65 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD-TPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-----------------   65 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeec-CCCCccCCccceeEEcCceEEEEECCCCCcCC-----------------
Confidence            579999999999999999999988765543 22344444433344444569999999954221                 


Q ss_pred             eCCCcccHHHH--HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         92 DIAKHLTYENV--ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        92 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                          .+.+...  ++.+.                       ....+|++++|.|+..+.+..+. .....+.   ..++|
T Consensus        66 ----~~~l~~~i~~Qa~~-----------------------Ai~eADvilfvVD~~~Git~~D~-~ia~~Lr---~~~kp  114 (444)
T COG1160          66 ----EDELQELIREQALI-----------------------AIEEADVILFVVDGREGITPADE-EIAKILR---RSKKP  114 (444)
T ss_pred             ----chHHHHHHHHHHHH-----------------------HHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH---hcCCC
Confidence                1111111  11111                       22458888888888888777662 1111222   23689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|-..     .++...-..++|+ +++.+||..|.|+.++++.+++.
T Consensus       115 viLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~  163 (444)
T COG1160         115 VILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLEL  163 (444)
T ss_pred             EEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhh
Confidence            999999999642     2233333345565 59999999999999999999865

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=1.1e-18  Score=150.92  Aligned_cols=151  Identities=25%  Similarity=0.219  Sum_probs=94.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--------cccchhhhc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY--------RAITSAYYR   82 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~   82 (223)
                      ..+|+++|.+|||||||+|+|++....... ...+.+..............+.+|||||....        ......+++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            468999999999999999999987643222 23344444444334334457899999996531        112223455


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++|+|..+..                                                   +..+ ..+...+..
T Consensus       354 ~aD~iL~VvDa~~~~---------------------------------------------------~~~d-~~i~~~Lr~  381 (712)
T PRK09518        354 LADAVVFVVDGQVGL---------------------------------------------------TSTD-ERIVRMLRR  381 (712)
T ss_pred             hCCEEEEEEECCCCC---------------------------------------------------CHHH-HHHHHHHHh
Confidence            666666666654422                                                   1111 022222222


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         .++|+++|+||+|+....    .....+ ...+. ..+++||+++.|+.+++++|++.
T Consensus       382 ---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~  434 (712)
T PRK09518        382 ---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDS  434 (712)
T ss_pred             ---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHh
Confidence               378999999999985421    111222 12333 36799999999999999998864

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.80  E-value=8e-19  Score=147.34  Aligned_cols=86  Identities=21%  Similarity=0.239  Sum_probs=60.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccc----cceeeeEEEEE------------EEcCeEEEEEEEeCCCCccccc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS----TIGVEFATRSI------------QVDQKTIKAQIWDTAGQERYRA   75 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~~~D~~G~~~~~~   75 (223)
                      .-|+++|.+|+|||||+++|.+..+......    +++..+.....            .+......+.+|||||+..+..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            3599999999999999999998876433222    22222111110            0001112388999999999999


Q ss_pred             cchhhhcCCcEEEEEEeCCCcc
Q psy15625         76 ITSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      ++..+++.+|++++|+|.++..
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~  106 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGF  106 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCC
Confidence            9888999999999999998743

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0076|consensus

Probab=99.80  E-value=1.2e-19  Score=125.21  Aligned_cols=156  Identities=22%  Similarity=0.372  Sum_probs=116.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccc-------ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-------LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR   82 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   82 (223)
                      ..+.|+++|..++|||||+.++......       ..-.++.+...  .+++++  ...+.+||..|+...+++|..|+.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC--NAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence            4578999999999999999998654321       11224444333  333344  457899999999999999999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++++|.++++.++......+.+..                                                  .
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~--------------------------------------------------~  121 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVE--------------------------------------------------N  121 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHH--------------------------------------------------H
Confidence            99999999999999888888754443322                                                  2


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHH------HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAE------RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ..-++.|+++.+||.|+.+.  ...++++....      +...++.+|||.+|+||++...|++.
T Consensus       122 E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~  184 (197)
T KOG0076|consen  122 EKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVK  184 (197)
T ss_pred             HHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHH
Confidence            22248999999999999863  33444444333      23467999999999999999999875

>KOG1489|consensus

Probab=99.80  E-value=1.7e-18  Score=130.86  Aligned_cols=156  Identities=18%  Similarity=0.221  Sum_probs=113.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch-------hhhcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS-------AYYRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~~~~~~   85 (223)
                      .|+++|.||+|||||++++++.+.....+++.+..+...++.+++.. .+.+-|+||..+-..+.+       ..++.|.
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            58999999999999999999998776666776677766666665544 489999999655443332       2366788


Q ss_pred             EEEEEEeCCCc---ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         86 GALLVYDIAKH---LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        86 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+++|+|++..   +.++.++....+++-+.                                                .
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye------------------------------------------------k  308 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYE------------------------------------------------K  308 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHh------------------------------------------------h
Confidence            88889998887   66666665544442211                                                1


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                       .-...|.+||+||+|+++.   ....+.+++.+.+-+ ++++||++++++.++.+.|-+
T Consensus       309 -~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  309 -GLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             -hhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence             1136799999999998641   222346777766544 999999999999999988754

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=1.5e-18  Score=137.80  Aligned_cols=168  Identities=25%  Similarity=0.298  Sum_probs=112.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.||+|||||+|+|+++.....+ +..|++.+.....+......+.++||+|...-..+...        +-
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~--------~E  247 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITES--------VE  247 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEECCeEEEEEECCCCCcccccccc--------eE
Confidence            4699999999999999999999998876555 44456666666666655567899999996443322221        01


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      .|++.+  +...+                              ..++.+++++|++.+-+.++.+ ....+..   .+.+
T Consensus       248 ~~Sv~r--t~~aI------------------------------~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~  291 (444)
T COG1160         248 KYSVAR--TLKAI------------------------------ERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRG  291 (444)
T ss_pred             EEeehh--hHhHH------------------------------hhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCC
Confidence            111111  11111                              3478888888888887777732 2222222   3789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++||+||.|+.+......++.+.....     ...+++++||+++.++.++|+.+.++
T Consensus       292 ~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~  349 (444)
T COG1160         292 IVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI  349 (444)
T ss_pred             eEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence            999999999876433444444333332     24689999999999999999998753

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.79  E-value=2.2e-18  Score=123.91  Aligned_cols=154  Identities=21%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc----------cccchhhhc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY----------RAITSAYYR   82 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~~   82 (223)
                      .|+++|.+|+|||||++++.+........++.+.+........+.   .+.+||+||....          ......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999996555444445554544444443433   8899999995432          111111222


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh--hHHHHHHh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN--VERWLREL  160 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~  160 (223)
                      ..                                                ...+.+++++|.....+...  +..|+.. 
T Consensus        78 ~~------------------------------------------------~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-  108 (170)
T cd01876          78 NR------------------------------------------------ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-  108 (170)
T ss_pred             hC------------------------------------------------hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-
Confidence            11                                                12333344444433321111  1122222 


Q ss_pred             hhccCCCceEEEeecccchhhccC--CChHHHHHHHH--HcCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAE--RNNLSFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                           .+.|+++++||+|+.....  ...........  ....+++++|++++.++.+++++|.+.+
T Consensus       109 -----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         109 -----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             -----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence                 2579999999999843211  11122222222  2345799999999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.79  E-value=3.6e-18  Score=133.73  Aligned_cols=166  Identities=22%  Similarity=0.181  Sum_probs=114.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ......|+++|.+|+|||||+|+|++.........+.+.++.++.+.+.+ +..+.+.||.|....-+-+          
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~----------  257 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHP----------  257 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChH----------
Confidence            34567899999999999999999999988888888888999888888876 3478999999954322111          


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                                -.+.....+++.                       ..+|.++.|.|++++...+.+......+.......
T Consensus       258 ----------LV~AFksTLEE~-----------------------~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~  304 (411)
T COG2262         258 ----------LVEAFKSTLEEV-----------------------KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE  304 (411)
T ss_pred             ----------HHHHHHHHHHHh-----------------------hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC
Confidence                      111222222222                       23555666666666655555555566666665567


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+|+|.||+|+.....    .........+ ..+.+||+++.|++.+++.|...
T Consensus       305 ~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~  354 (411)
T COG2262         305 IPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIEL  354 (411)
T ss_pred             CCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHH
Confidence            99999999999754222    1111111112 58999999999999999988763

>KOG4423|consensus

Probab=99.79  E-value=3.1e-21  Score=134.53  Aligned_cols=167  Identities=34%  Similarity=0.648  Sum_probs=137.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      +-.+++.|+|..|+|||+++.++....+...+..+++.++..+..+-+ ...+++.+||+.|+..++.+..-+++.+++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            446899999999999999999999999988888888887766655544 3456789999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||+++..+++.+..|.+++...                                               +....+..
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk-----------------------------------------------~qLpng~P  135 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSK-----------------------------------------------LQLPNGTP  135 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCc-----------------------------------------------ccCCCCCc
Confidence            9999999999999999888877331                                               12222346


Q ss_pred             ceEEEeecccchhhccCC-ChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAV-PADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++..||||....... ...+...+.+++|+. .+++|+|.+.++.|+...+++.
T Consensus       136 v~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~  192 (229)
T KOG4423|consen  136 VPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEK  192 (229)
T ss_pred             chheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHH
Confidence            899999999998652222 236778888888875 9999999999999998888753

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.79  E-value=2.1e-17  Score=125.55  Aligned_cols=196  Identities=21%  Similarity=0.236  Sum_probs=124.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-------ccchhhhcC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-------AITSAYYRG   83 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~   83 (223)
                      --+++++|.|++|||||+++|++.+......++.+.+..+..+.+.  +..+++.|+||..+..       .......++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~--ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK--GAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeec--CceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            3689999999999999999999998877777777777767666554  4578999999854322       334456899


Q ss_pred             CcEEEEEEeCCCccc-HHHHHHHHHHHHH---hcCCceeEE--------EeCCCcc-------ccc---cccccceeEEE
Q psy15625         84 AVGALLVYDIAKHLT-YENVERWLRELRD---HADQNIVIM--------LVGPPSL-------LRR---YYRGAVGALLV  141 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~-------~~~---~~~~~~~~~~~  141 (223)
                      ||++++|+|...... .+.+.+.++..--   ...+++.+.        +.++..+       .+.   .++-..+.+++
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999997665 4444433332211   112222222        2221111       111   11212222222


Q ss_pred             eecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        142 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       142 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      -   ..-|.+++.   ..+... ...+|.++|.||+|+..     .++...+.+..  ..+.+||+++.|++++.+.|.+
T Consensus       221 r---~dvTlDd~i---d~l~~n-rvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~  286 (365)
T COG1163         221 R---EDVTLDDLI---DALEGN-RVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWD  286 (365)
T ss_pred             e---cCCcHHHHH---HHHhhc-ceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHH
Confidence            1   223333332   222222 23689999999999854     45555555555  7799999999999999999876


Q ss_pred             h
Q psy15625        222 A  222 (223)
Q Consensus       222 ~  222 (223)
                      .
T Consensus       287 ~  287 (365)
T COG1163         287 V  287 (365)
T ss_pred             h
Confidence            4

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.79  E-value=3.5e-18  Score=147.89  Aligned_cols=154  Identities=21%  Similarity=0.219  Sum_probs=95.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-c---------c-
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-I---------T-   77 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~---------~-   77 (223)
                      ..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++.  .+.+|||||..+... .         . 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            35899999999999999999999987532 22233344444444555544  467999999542111 0         0 


Q ss_pred             hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625         78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL  157 (223)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (223)
                      ..+++.+|++++|+|.++..+.....                                                    ++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~----------------------------------------------------i~  554 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK----------------------------------------------------VM  554 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH----------------------------------------------------HH
Confidence            11234555555555555544433332                                                    12


Q ss_pred             HHhhhccCCCceEEEeecccchhhccCCChHHHHHHH-HH----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        158 RELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-ER----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..+..   .++|+++|+||+|+.+...  .+...... ..    ...+++++||++|.|++++|+.+.++
T Consensus       555 ~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~  619 (712)
T PRK09518        555 SMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEA  619 (712)
T ss_pred             HHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            22221   3689999999999864211  12222211 11    13467999999999999999998764

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.79  E-value=1.6e-18  Score=142.27  Aligned_cols=155  Identities=18%  Similarity=0.156  Sum_probs=99.5

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccccc-----------------------------ccccceeeeEEEEEEEcCe
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFATRSIQVDQK   58 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   58 (223)
                      +++.++|+++|++++|||||+++|+...-...                             .....+++.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            56789999999999999999999984321110                             0112344555555556666


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCcccccccccccee
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGA  138 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (223)
                      ...+.+|||||+.++.......++.+|++++|+|..+.........                                  
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~----------------------------------  128 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR----------------------------------  128 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH----------------------------------
Confidence            7789999999987776544455678889999998876211111110                                  


Q ss_pred             EEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC----CChHHHHHHHHHcC-----CeEEEeecCCC
Q psy15625        139 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA----VPADEAKTFAERNN-----LSFIETSALDS  209 (223)
Q Consensus       139 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~  209 (223)
                                      .++......  ...|+++++||+|+.+...    ...+++..+....+     ++++++||++|
T Consensus       129 ----------------~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g  190 (425)
T PRK12317        129 ----------------EHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEG  190 (425)
T ss_pred             ----------------HHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccC
Confidence                            011111111  1247999999999864111    12235555555554     46999999999


Q ss_pred             CCHHH
Q psy15625        210 TNVET  214 (223)
Q Consensus       210 ~~i~~  214 (223)
                      .|+++
T Consensus       191 ~gi~~  195 (425)
T PRK12317        191 DNVVK  195 (425)
T ss_pred             CCccc
Confidence            99986

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.79  E-value=5.1e-18  Score=140.58  Aligned_cols=160  Identities=18%  Similarity=0.160  Sum_probs=109.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      ..+|+++|+||||||||+|++++......++|..+.+.....+...++  .+++.|.||.                    
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~--------------------   60 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGT--------------------   60 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCc--------------------
Confidence            456999999999999999999999988888888766666666555444  5899999994                    


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      |+.+..+..+.+.+  +.+.                     ....|+++-+.|++.-+---      ...-+...-+.|+
T Consensus        61 YSL~~~S~DE~Var--~~ll---------------------~~~~D~ivnVvDAtnLeRnL------yltlQLlE~g~p~  111 (653)
T COG0370          61 YSLTAYSEDEKVAR--DFLL---------------------EGKPDLIVNVVDATNLERNL------YLTLQLLELGIPM  111 (653)
T ss_pred             CCCCCCCchHHHHH--HHHh---------------------cCCCCEEEEEcccchHHHHH------HHHHHHHHcCCCe
Confidence            33333222222221  0000                     02344455555544432111      1112222237899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++.|++|....+. ..-+.+++.+..|+|++++||+++.|++++...+.+.
T Consensus       112 ilaLNm~D~A~~~G-i~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~  162 (653)
T COG0370         112 ILALNMIDEAKKRG-IRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIEL  162 (653)
T ss_pred             EEEeccHhhHHhcC-CcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence            99999999887443 4557778888999999999999999999999988764

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.79  E-value=1.3e-18  Score=142.81  Aligned_cols=157  Identities=17%  Similarity=0.139  Sum_probs=102.6

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhC--ccccc---------------------------ccccceeeeEEEEEEEcC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRN--EFNLE---------------------------SKSTIGVEFATRSIQVDQ   57 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~   57 (223)
                      .+++.++|+++|..++|||||+++|+..  .....                           .....+.+.......+..
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~   82 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET   82 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence            3567899999999999999999999852  11100                           001223444455555666


Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG  137 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
                      ....+.+||+||+.++.......+..+|++++|+|.++.++.. ...+.+.                             
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~-----------------------------  132 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREH-----------------------------  132 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHH-----------------------------
Confidence            6678999999998877655555678899999999998864321 1111110                             


Q ss_pred             eEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC----CChHHHHHHHHHcC-----CeEEEeecCC
Q psy15625        138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA----VPADEAKTFAERNN-----LSFIETSALD  208 (223)
Q Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~  208 (223)
                                         +......  ...|+++++||+|+.+...    ...+++..++...+     ++++++||++
T Consensus       133 -------------------~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~  191 (426)
T TIGR00483       133 -------------------AFLARTL--GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWN  191 (426)
T ss_pred             -------------------HHHHHHc--CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccc
Confidence                               1111111  1357999999999864111    11345556666555     5799999999


Q ss_pred             CCCHHH
Q psy15625        209 STNVET  214 (223)
Q Consensus       209 ~~~i~~  214 (223)
                      +.|+.+
T Consensus       192 g~ni~~  197 (426)
T TIGR00483       192 GDNVIK  197 (426)
T ss_pred             cccccc
Confidence            999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.78  E-value=4.4e-18  Score=124.97  Aligned_cols=157  Identities=17%  Similarity=0.149  Sum_probs=98.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccc------c--------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL------E--------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA   75 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~   75 (223)
                      +.++|+++|..++|||||+++|+......      .        .....+++.......+......+.++||||+..+..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            35899999999999999999998641100      0        001234445555555656666889999999876655


Q ss_pred             cchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625         76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER  155 (223)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (223)
                      .....+..+|++++|+|..........                                                    .
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~~~~~----------------------------------------------------~  108 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPMPQTR----------------------------------------------------E  108 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCcHHHH----------------------------------------------------H
Confidence            555566778888888877654221111                                                    1


Q ss_pred             HHHHhhhccCCCce-EEEeecccchhhccCC---ChHHHHHHHHHcC-----CeEEEeecCCCCCH----------HHHH
Q psy15625        156 WLRELRDHADQNIV-IMLVGNKSDLRHLRAV---PADEAKTFAERNN-----LSFIETSALDSTNV----------ETAF  216 (223)
Q Consensus       156 ~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i----------~~~~  216 (223)
                      .+..+..   .++| +++++||+|+......   ..+++.++....+     ++++++||++|.|+          ..++
T Consensus       109 ~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~  185 (195)
T cd01884         109 HLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELL  185 (195)
T ss_pred             HHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHH
Confidence            1122222   2555 7889999998531111   1234555554443     67999999999874          4666


Q ss_pred             HHHHh
Q psy15625        217 QNILT  221 (223)
Q Consensus       217 ~~i~~  221 (223)
                      +.|.+
T Consensus       186 ~~l~~  190 (195)
T cd01884         186 DALDS  190 (195)
T ss_pred             HHHHh
Confidence            66653

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.78  E-value=1.7e-17  Score=118.79  Aligned_cols=173  Identities=19%  Similarity=0.213  Sum_probs=114.0

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      ++-+++...-|+++|.+|||||||||+|++.+.......++|.+.....+.+++.   +.++|.||..- ..        
T Consensus        17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGy-Ak--------   84 (200)
T COG0218          17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGY-AK--------   84 (200)
T ss_pred             hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCccc-cc--------
Confidence            3445566789999999999999999999998755555566777766666666654   78999999421 10        


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                                .   +-+..+.|-+.+.++-..                ..+..++++++|++++....+. ..+..+.  
T Consensus        85 ----------v---~k~~~e~w~~~i~~YL~~----------------R~~L~~vvlliD~r~~~~~~D~-em~~~l~--  132 (200)
T COG0218          85 ----------V---PKEVKEKWKKLIEEYLEK----------------RANLKGVVLLIDARHPPKDLDR-EMIEFLL--  132 (200)
T ss_pred             ----------C---CHHHHHHHHHHHHHHHhh----------------chhheEEEEEEECCCCCcHHHH-HHHHHHH--
Confidence                      0   112333444444333221                1347788999999999888775 2222232  


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHH----cCCe--EEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER----NNLS--FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~--~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       ..++|++|++||+|.....+.. ......+..    ....  ++..|+.++.|++++.+.|.+.
T Consensus       133 -~~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~  195 (200)
T COG0218         133 -ELGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEW  195 (200)
T ss_pred             -HcCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHH
Confidence             3489999999999986532221 112222322    2222  7889999999999999888763

>KOG0074|consensus

Probab=99.78  E-value=3.8e-18  Score=113.96  Aligned_cols=157  Identities=22%  Similarity=0.362  Sum_probs=115.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...+||+++|..|+|||||+..|...... .-.|+.|  +.++.+.+++. ..+++||.+|+..-++.|..|+.+.|+++
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEE
Confidence            56799999999999999999999876643 3335544  44455545443 58999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++...++.+...+.++                                                  ++...-...
T Consensus        91 yVIDS~D~krfeE~~~el~EL--------------------------------------------------leeeKl~~v  120 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVEL--------------------------------------------------LEEEKLAEV  120 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHH--------------------------------------------------hhhhhhhcc
Confidence            999988888888776444433                                                  233333478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      |++|..||.|+...  ...++.-.-+.-     .-+.+.+||+.+++|+..-.+|+.+
T Consensus       121 pvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  121 PVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             ceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence            99999999998641  222222111111     1345889999999999988888765

>PRK10218 GTP-binding protein; Provisional

Probab=99.78  E-value=1.6e-17  Score=139.95  Aligned_cols=158  Identities=16%  Similarity=0.213  Sum_probs=111.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC--cccccc------------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN--EFNLES------------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA   75 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~   75 (223)
                      ...+|+++|..++|||||+++|+..  .+....            ....+.++......+.+....+.+|||||+.++..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            4678999999999999999999972  222211            13445666666667777788999999999999998


Q ss_pred             cchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625         76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER  155 (223)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (223)
                      .+..+++.+|++++|+|..+....+...                                                    
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~----------------------------------------------------  111 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTRF----------------------------------------------------  111 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHHH----------------------------------------------------
Confidence            8899999999999999987754322221                                                    


Q ss_pred             HHHHhhhccCCCceEEEeecccchhhccC-CChHHHHHHHH-------HcCCeEEEeecCCCC----------CHHHHHH
Q psy15625        156 WLRELRDHADQNIVIMLVGNKSDLRHLRA-VPADEAKTFAE-------RNNLSFIETSALDST----------NVETAFQ  217 (223)
Q Consensus       156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~  217 (223)
                      ++.....   .++|.++++||+|+.+.+. ...+++..+..       +..++++++||++|.          ++..+++
T Consensus       112 ~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld  188 (607)
T PRK10218        112 VTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQ  188 (607)
T ss_pred             HHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHH
Confidence            1111111   3688999999999864221 11233333331       234679999999998          5888998


Q ss_pred             HHHhh
Q psy15625        218 NILTA  222 (223)
Q Consensus       218 ~i~~~  222 (223)
                      .|+..
T Consensus       189 ~Ii~~  193 (607)
T PRK10218        189 AIVDH  193 (607)
T ss_pred             HHHHh
Confidence            88753

>KOG1423|consensus

Probab=99.77  E-value=1.5e-17  Score=125.29  Aligned_cols=178  Identities=19%  Similarity=0.180  Sum_probs=106.3

Q ss_pred             CCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625          2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY   81 (223)
Q Consensus         2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   81 (223)
                      +-++.+..+.+.|+++|.||+|||||.|.+.+.++.+......+++....-+ +......+.++||||...-...+....
T Consensus        63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l  141 (379)
T KOG1423|consen   63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHL  141 (379)
T ss_pred             CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHH
Confidence            4455566678999999999999999999999999988887666555444433 555666899999999543222221110


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      ...                -++                       -.+....++|.++++.|+++..+.... ..+..+.
T Consensus       142 ~~s----------------~lq-----------------------~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~  181 (379)
T KOG1423|consen  142 MMS----------------VLQ-----------------------NPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLE  181 (379)
T ss_pred             HHH----------------hhh-----------------------CHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHH
Confidence            000                000                       001112346666666666643332221 1222333


Q ss_pred             hccCCCceEEEeecccchhhc-------------cCCCh---HHHHHHHHHc---------CC----eEEEeecCCCCCH
Q psy15625        162 DHADQNIVIMLVGNKSDLRHL-------------RAVPA---DEAKTFAERN---------NL----SFIETSALDSTNV  212 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~---~~~~~~~~~~---------~~----~~~~~Sa~~~~~i  212 (223)
                      ..  .++|-++|.||.|....             ..+..   +-..++....         |+    .+|.+||++|+|+
T Consensus       182 ~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gi  259 (379)
T KOG1423|consen  182 EY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGI  259 (379)
T ss_pred             HH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCH
Confidence            33  26788999999996431             11111   1111111111         22    3899999999999


Q ss_pred             HHHHHHHHhh
Q psy15625        213 ETAFQNILTA  222 (223)
Q Consensus       213 ~~~~~~i~~~  222 (223)
                      +++.++|..-
T Consensus       260 kdlkqyLmsq  269 (379)
T KOG1423|consen  260 KDLKQYLMSQ  269 (379)
T ss_pred             HHHHHHHHhc
Confidence            9999999764

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.77  E-value=1.7e-18  Score=128.99  Aligned_cols=148  Identities=23%  Similarity=0.202  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccc-----------------------------cccceeeeEEEEEEEcCeEEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLES-----------------------------KSTIGVEFATRSIQVDQKTIKAQ   63 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (223)
                      ||+++|.+|+|||||+++|+...-....                             ....+.+.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999999764321110                             00122333333344445566889


Q ss_pred             EEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEee
Q psy15625         64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD  143 (223)
Q Consensus        64 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  143 (223)
                      +|||||+.++.......++.+|++++|+|.++........                                        
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~----------------------------------------  120 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR----------------------------------------  120 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH----------------------------------------
Confidence            9999998776554555677888888888877643211111                                        


Q ss_pred             cccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC----CChHHHHHHHHHcC---CeEEEeecCCCCCHHH
Q psy15625        144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA----VPADEAKTFAERNN---LSFIETSALDSTNVET  214 (223)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  214 (223)
                                  ....+...  ...++++|+||+|+.+...    ....+.+.+....+   .+++++||+++.|+.+
T Consensus       121 ------------~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         121 ------------HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             ------------HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence                        01111111  1245788999999864211    11234455555555   3589999999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=2.9e-17  Score=115.11  Aligned_cols=155  Identities=25%  Similarity=0.425  Sum_probs=114.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccccc--------ccc--cceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--------SKS--TIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSA   79 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~   79 (223)
                      ...||+|.|+-++||||++++++.......        +..  ..+...+.....+++ ...+.+++||||.++.-++..
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~~   87 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWEI   87 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHHH
Confidence            467999999999999999999998764211        111  122223333333333 246899999999999999999


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625         80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE  159 (223)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (223)
                      ..+++.++++++|.+++..+ .....                                                   +..
T Consensus        88 l~~ga~gaivlVDss~~~~~-~a~~i---------------------------------------------------i~f  115 (187)
T COG2229          88 LSRGAVGAIVLVDSSRPITF-HAEEI---------------------------------------------------IDF  115 (187)
T ss_pred             HhCCcceEEEEEecCCCcch-HHHHH---------------------------------------------------HHH
Confidence            99999999999999999887 22211                                                   222


Q ss_pred             hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +....  .+|++|++||.|+.+  ....+++++.....  .+++++.+|..+++..+.++.+..
T Consensus       116 ~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~  175 (187)
T COG2229         116 LTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLL  175 (187)
T ss_pred             Hhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHh
Confidence            22221  289999999999986  45667777776655  789999999999999998887654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.77  E-value=6.8e-18  Score=115.69  Aligned_cols=135  Identities=23%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc----cccccchhhhcCCcEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE----RYRAITSAYYRGAVGAL   88 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~~~~i   88 (223)
                      ||+++|+.|||||||+++|.+.+.  .+..+....+            .-.++||||--    .+..-.......+|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998764  3323332222            12459999921    11111222234555555


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      ++.|.+++.+                                                   .-.     ..+...  .+.
T Consensus        69 ll~dat~~~~---------------------------------------------------~~p-----P~fa~~--f~~   90 (143)
T PF10662_consen   69 LLQDATEPRS---------------------------------------------------VFP-----PGFASM--FNK   90 (143)
T ss_pred             EEecCCCCCc---------------------------------------------------cCC-----chhhcc--cCC
Confidence            5555554332                                                   111     111111  257


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHH
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNIL  220 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~  220 (223)
                      |+|=|+||+|+.. .....+..+++.+..|+. +|++|+.+++|++++.++|-
T Consensus        91 pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   91 PVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            9999999999983 134566778888888885 89999999999999999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG0072|consensus

Probab=99.76  E-value=9.2e-19  Score=117.22  Aligned_cols=156  Identities=23%  Similarity=0.335  Sum_probs=113.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ...+|+++|..|+||||++-++.-.++. ...|+++.+...    +..+..++++||..|+...++.|+.|+.+.+++++
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            5689999999999999999888766653 334666655443    44477899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.++..........+                                                  ...+.+..-++..
T Consensus        92 VVDssd~dris~a~~el--------------------------------------------------~~mL~E~eLq~a~  121 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVEL--------------------------------------------------YSMLQEEELQHAK  121 (182)
T ss_pred             EEeccchhhhhhhHHHH--------------------------------------------------HHHhccHhhcCce
Confidence            99999977654443211                                                  1122222224577


Q ss_pred             EEEeecccchhhccCCChHHH-----HHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEA-----KTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++||.|.....  ...+.     ..-.+..-+.++++||.+++|+++.++|+.+.
T Consensus       122 llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~  177 (182)
T KOG0072|consen  122 LLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRP  177 (182)
T ss_pred             EEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHH
Confidence            89999999986521  12221     11112223679999999999999999999763

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.76  E-value=3.8e-17  Score=123.62  Aligned_cols=87  Identities=15%  Similarity=0.205  Sum_probs=64.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccccc--------c--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLE--------S--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI   76 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   76 (223)
                      +|+++|.+|+|||||+++|+...-...        .        ....+.++......+.+....+.+|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999986421100        0        012223344445555666778999999999988888


Q ss_pred             chhhhcCCcEEEEEEeCCCcccH
Q psy15625         77 TSAYYRGAVGALLVYDIAKHLTY   99 (223)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~   99 (223)
                      ...+++.+|++++|+|..+....
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~  103 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA  103 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH
Confidence            88899999999999999886543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.76  E-value=1.4e-17  Score=140.37  Aligned_cols=156  Identities=17%  Similarity=0.226  Sum_probs=108.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC--cccccc------------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN--EFNLES------------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT   77 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~   77 (223)
                      .+|+++|+.++|||||+++|+..  .+....            ....++++......+.+....+.+|||||+.+|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            47999999999999999999863  221110            1223455555555566677899999999999998888


Q ss_pred             hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625         78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL  157 (223)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (223)
                      ..+++.+|++++|+|..+.... ...                                                   .++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~~~-qT~---------------------------------------------------~~l  109 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGPMP-QTR---------------------------------------------------FVL  109 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCCcH-HHH---------------------------------------------------HHH
Confidence            8889999999999998764322 122                                                   122


Q ss_pred             HHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHH-------HcCCeEEEeecCCCC----------CHHHHHHHH
Q psy15625        158 RELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAE-------RNNLSFIETSALDST----------NVETAFQNI  219 (223)
Q Consensus       158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~i  219 (223)
                      .....   .++|+++|+||+|+.+.+.. ..++...+..       +..++++++||+++.          |+..+|+.|
T Consensus       110 ~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~I  186 (594)
T TIGR01394       110 KKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAI  186 (594)
T ss_pred             HHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHH
Confidence            22222   36899999999998642211 1233333332       235689999999996          799999998


Q ss_pred             Hhh
Q psy15625        220 LTA  222 (223)
Q Consensus       220 ~~~  222 (223)
                      ++.
T Consensus       187 v~~  189 (594)
T TIGR01394       187 VRH  189 (594)
T ss_pred             HHh
Confidence            764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.75  E-value=1.7e-17  Score=140.54  Aligned_cols=154  Identities=17%  Similarity=0.157  Sum_probs=100.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc---ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE---FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      -|+++|..++|||||+++|++..   +++.....++++.....+...+ ...+.+||+||+..+.......+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            58999999999999999999643   2333333444444333332222 2357999999998886666667888999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|......-+..+                                                    .+..+..   .++|
T Consensus        81 VVda~eg~~~qT~e----------------------------------------------------hl~il~~---lgi~  105 (614)
T PRK10512         81 VVACDDGVMAQTRE----------------------------------------------------HLAILQL---TGNP  105 (614)
T ss_pred             EEECCCCCcHHHHH----------------------------------------------------HHHHHHH---cCCC
Confidence            99987632211111                                                    0111111   1344


Q ss_pred             -EEEeecccchhhccCC--ChHHHHHHHHHcC---CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 -IMLVGNKSDLRHLRAV--PADEAKTFAERNN---LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 -~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       +++|+||+|+.+....  ..+++..+....+   .+++++||++|.|++++++.|.+.
T Consensus       106 ~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~  164 (614)
T PRK10512        106 MLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQL  164 (614)
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence             5799999998642211  1234445544444   679999999999999999998764

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.75  E-value=5.1e-17  Score=127.29  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=58.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE---------------------cC-eEEEEEEEeCCCC-
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---------------------DQ-KTIKAQIWDTAGQ-   70 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~D~~G~-   70 (223)
                      |+++|.||||||||+|++++........+..+.++......+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999999998765444444443433332222                     22 4478999999997 


Q ss_pred             ---ccccccchh---hhcCCcEEEEEEeCCC
Q psy15625         71 ---ERYRAITSA---YYRGAVGALLVYDIAK   95 (223)
Q Consensus        71 ---~~~~~~~~~---~~~~~~~~i~v~d~~~   95 (223)
                         .++..+...   .++.+|++++|+|+++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               334444444   4999999999999984

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.75  E-value=3.2e-17  Score=138.23  Aligned_cols=86  Identities=23%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccc----cceeeeEEEEEEE--cCeE-----E-----EEEEEeCCCCcccc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS----TIGVEFATRSIQV--DQKT-----I-----KAQIWDTAGQERYR   74 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~-----~-----~~~~~D~~G~~~~~   74 (223)
                      +..|+++|.+|+|||||+++|.+..+......    +++.++.+.....  .+..     .     .+.+|||||+..|.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            45799999999999999999987654333222    2222211111000  0111     1     26899999999999


Q ss_pred             ccchhhhcCCcEEEEEEeCCCc
Q psy15625         75 AITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      .++...++.+|++++|+|.++.
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~g  107 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINEG  107 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCCC
Confidence            8888888899999999998873

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.75  E-value=1.9e-17  Score=134.79  Aligned_cols=160  Identities=22%  Similarity=0.204  Sum_probs=99.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccc---cccccceeeeEEEEE--------------EE----cC------eEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL---ESKSTIGVEFATRSI--------------QV----DQ------KTIK   61 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~--------------~~----~~------~~~~   61 (223)
                      .+.++|+++|..++|||||+++|.+.....   ......+........              ..    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            467899999999999999999997643211   111111111110000              00    11      1357


Q ss_pred             EEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEE
Q psy15625         62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLV  141 (223)
Q Consensus        62 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (223)
                      +.+||+||+.++..........+|++++|+|..+........                                      
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~--------------------------------------  123 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTK--------------------------------------  123 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchH--------------------------------------
Confidence            899999999888776666777889999999987643111111                                      


Q ss_pred             eecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHc---CCeEEEeecCCCCCHHHHH
Q psy15625        142 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERN---NLSFIETSALDSTNVETAF  216 (223)
Q Consensus       142 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~  216 (223)
                                   ..+..+...  ...|+++++||+|+.+....  ..+++..+....   +++++++||+++.|+++++
T Consensus       124 -------------e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~  188 (406)
T TIGR03680       124 -------------EHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALL  188 (406)
T ss_pred             -------------HHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHH
Confidence                         011111111  12478999999998642211  123344444332   5789999999999999999


Q ss_pred             HHHHh
Q psy15625        217 QNILT  221 (223)
Q Consensus       217 ~~i~~  221 (223)
                      ++|..
T Consensus       189 e~L~~  193 (406)
T TIGR03680       189 EAIEK  193 (406)
T ss_pred             HHHHH
Confidence            99976

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG1707|consensus

Probab=99.74  E-value=8.7e-18  Score=136.07  Aligned_cols=168  Identities=26%  Similarity=0.308  Sum_probs=123.4

Q ss_pred             CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625          3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR   82 (223)
Q Consensus         3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   82 (223)
                      |+.++....+||+++|..|+|||||+-++...++.+.-++...  .-.....+....+...+.|++...+.......-++
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir   78 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIR   78 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHh
Confidence            3456677889999999999999999999999998766543321  11111333445567899999876666666667789


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .++++.++|++.++++.+.+..                                                  +|+..+..
T Consensus        79 kA~vi~lvyavd~~~T~D~ist--------------------------------------------------~WLPlir~  108 (625)
T KOG1707|consen   79 KADVICLVYAVDDESTVDRIST--------------------------------------------------KWLPLIRQ  108 (625)
T ss_pred             hcCEEEEEEecCChHHhhhhhh--------------------------------------------------hhhhhhhc
Confidence            9999999999999999888873                                                  77777766


Q ss_pred             ccC--CCceEEEeecccchhhccCCChHH-HHHHHHHcC-C-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HAD--QNIVIMLVGNKSDLRHLRAVPADE-AKTFAERNN-L-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..+  .++|+|+|+||+|.......+.+. ...+..+.. + ..++|||++..++.++|.....+
T Consensus       109 ~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKa  173 (625)
T KOG1707|consen  109 LFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKA  173 (625)
T ss_pred             ccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhhe
Confidence            653  379999999999997655443343 333333332 1 26999999999999999886543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.74  E-value=2.9e-17  Score=133.68  Aligned_cols=163  Identities=21%  Similarity=0.201  Sum_probs=98.3

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCccc---ccccccceeeeEEEEEEE------------------c--C----e
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVEFATRSIQV------------------D--Q----K   58 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----~   58 (223)
                      ...++.++|+++|..++|||||+.+|.+....   .......+..........                  +  +    .
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            45667899999999999999999999663211   111112222211100000                  0  0    0


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG  137 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
                      ...+.+||+||+.++..........+|++++|+|..++. .......                                 
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~---------------------------------  130 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH---------------------------------  130 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH---------------------------------
Confidence            257899999998766544444455568888888887643 1111110                                 


Q ss_pred             eEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH---cCCeEEEeecCCCCCH
Q psy15625        138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER---NNLSFIETSALDSTNV  212 (223)
Q Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i  212 (223)
                                         +..+...  ...|+++|+||+|+.+....  ..++++.+...   .+.+++++||+++.|+
T Consensus       131 -------------------l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI  189 (411)
T PRK04000        131 -------------------LMALDII--GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNI  189 (411)
T ss_pred             -------------------HHHHHHc--CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCH
Confidence                               1111111  12468999999998653221  12334444433   2578999999999999


Q ss_pred             HHHHHHHHhh
Q psy15625        213 ETAFQNILTA  222 (223)
Q Consensus       213 ~~~~~~i~~~  222 (223)
                      +++++.|.+.
T Consensus       190 ~~L~~~L~~~  199 (411)
T PRK04000        190 DALIEAIEEE  199 (411)
T ss_pred             HHHHHHHHHh
Confidence            9999998763

>PRK12736 elongation factor Tu; Reviewed

Probab=99.73  E-value=5e-17  Score=131.83  Aligned_cols=161  Identities=17%  Similarity=0.164  Sum_probs=103.6

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccc--------------cccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      ....+.++|+++|+.++|||||+++|++.....              ......+++.......+......+.++|+||+.
T Consensus         7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence            345568999999999999999999998632100              001133445555555565556678999999987


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE  151 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  151 (223)
                      +|..........+|++++|+|......-...+                                                
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~------------------------------------------------  118 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQTRE------------------------------------------------  118 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchhHHH------------------------------------------------
Confidence            77655555567788888888876543221111                                                


Q ss_pred             hhHHHHHHhhhccCCCce-EEEeecccchhhccCCC---hHHHHHHHHHcC-----CeEEEeecCCCC--------CHHH
Q psy15625        152 NVERWLRELRDHADQNIV-IMLVGNKSDLRHLRAVP---ADEAKTFAERNN-----LSFIETSALDST--------NVET  214 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~--------~i~~  214 (223)
                          .+..+..   .++| +++++||+|+.+.....   .+++..+....+     ++++++||+++.        ++.+
T Consensus       119 ----~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~  191 (394)
T PRK12736        119 ----HILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIME  191 (394)
T ss_pred             ----HHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHH
Confidence                1111221   2567 67899999986422211   234555555544     579999999983        6788


Q ss_pred             HHHHHHh
Q psy15625        215 AFQNILT  221 (223)
Q Consensus       215 ~~~~i~~  221 (223)
                      +++.+.+
T Consensus       192 Ll~~l~~  198 (394)
T PRK12736        192 LMDAVDE  198 (394)
T ss_pred             HHHHHHH
Confidence            8887754

>PRK12735 elongation factor Tu; Reviewed

Probab=99.73  E-value=7.3e-17  Score=130.99  Aligned_cols=166  Identities=16%  Similarity=0.146  Sum_probs=103.1

Q ss_pred             CCCCcc-ccceeEEEEEEcCCCCcHHHHHHHHhhCcc-------c-----c--cccccceeeeEEEEEEEcCeEEEEEEE
Q psy15625          1 MGTRED-EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF-------N-----L--ESKSTIGVEFATRSIQVDQKTIKAQIW   65 (223)
Q Consensus         1 ~~~~~~-~~~~~~~i~v~G~~~~GKStli~~l~~~~~-------~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (223)
                      |+.+.. +..+.++|+++|.+++|||||+++|++...       .     .  ......+++.......+......+.++
T Consensus         1 ~~~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~i   80 (396)
T PRK12735          1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV   80 (396)
T ss_pred             CchhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEE
Confidence            344443 345579999999999999999999986210       0     0  011123444545555555555678999


Q ss_pred             eCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecc
Q psy15625         66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIA  145 (223)
Q Consensus        66 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  145 (223)
                      ||||+.+|..........+|++++|+|..+.......                                           
T Consensus        81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~-------------------------------------------  117 (396)
T PRK12735         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTR-------------------------------------------  117 (396)
T ss_pred             ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHH-------------------------------------------
Confidence            9999876655455556677888888887653221111                                           


Q ss_pred             cccchhhhHHHHHHhhhccCCCceEE-EeecccchhhccCC---ChHHHHHHHHHcC-----CeEEEeecCCCC------
Q psy15625        146 KHLTYENVERWLRELRDHADQNIVIM-LVGNKSDLRHLRAV---PADEAKTFAERNN-----LSFIETSALDST------  210 (223)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~------  210 (223)
                               ..+..+..   .++|.+ +++||+|+.+....   ..+++..+....+     ++++++||+++.      
T Consensus       118 ---------e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~  185 (396)
T PRK12735        118 ---------EHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDE  185 (396)
T ss_pred             ---------HHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCC
Confidence                     11111221   256755 57999998642211   1224555555543     679999999984      


Q ss_pred             ----CHHHHHHHHHh
Q psy15625        211 ----NVETAFQNILT  221 (223)
Q Consensus       211 ----~i~~~~~~i~~  221 (223)
                          ++.++++.|.+
T Consensus       186 ~w~~~~~~Ll~~l~~  200 (396)
T PRK12735        186 EWEAKILELMDAVDS  200 (396)
T ss_pred             cccccHHHHHHHHHh
Confidence                67788887764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=9.3e-17  Score=122.38  Aligned_cols=167  Identities=18%  Similarity=0.185  Sum_probs=107.5

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ......|+|.|.||||||||++++++.+......|+.+......++..+  ...++++||||.-+.-             
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRP-------------  229 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRP-------------  229 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCC-------------
Confidence            3456789999999999999999999999887777776666666665444  4467999999932110             


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc--cchhhhHHHHHHhhhccC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH--LTYENVERWLRELRDHAD  165 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~  165 (223)
                           ....+..+..  ....++.                      -.++|++++|++..  .+.+.....+..+.....
T Consensus       230 -----l~ErN~IE~q--Ai~AL~h----------------------l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~  280 (346)
T COG1084         230 -----LEERNEIERQ--AILALRH----------------------LAGVILFLFDPSETCGYSLEEQISLLEEIKELFK  280 (346)
T ss_pred             -----hHHhcHHHHH--HHHHHHH----------------------hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC
Confidence                 0011111110  0011111                      25567778887755  444666666777766553


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        .|+++|+||+|....+.  .++........ +.....+++..+.+++.+-..+..+
T Consensus       281 --~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         281 --APIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             --CCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence              89999999999875322  23333333333 3447888999999998877666544

>cd04167 Snu114p Snu114p subfamily

Probab=99.73  E-value=7.9e-17  Score=120.50  Aligned_cols=87  Identities=24%  Similarity=0.360  Sum_probs=62.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccc-----------------cccceeeeEEEEEE--E---cCeEEEEEEEeCCCC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLES-----------------KSTIGVEFATRSIQ--V---DQKTIKAQIWDTAGQ   70 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~~~D~~G~   70 (223)
                      +|+++|..|+|||||+++|+........                 ....+.++......  .   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875433210                 01112222222222  2   345678999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625         71 ERYRAITSAYYRGAVGALLVYDIAKHLTY   99 (223)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~   99 (223)
                      .++......++..+|++++|+|..+..+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~  110 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTS  110 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCH
Confidence            98888888889999999999998876544

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.72  E-value=7.5e-17  Score=130.98  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=100.1

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCccc------------c--cccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN------------L--ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      ++.++.++|+++|..++|||||+++|++....            .  ......+++.......+......+.+|||||+.
T Consensus         7 ~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         7 ERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence            44566899999999999999999999743110            0  001123445555556666666788999999988


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE  151 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  151 (223)
                      +|..........+|++++|+|..........+                                                
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e------------------------------------------------  118 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTRE------------------------------------------------  118 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH------------------------------------------------
Confidence            77654444556678888888877632221111                                                


Q ss_pred             hhHHHHHHhhhccCCCceE-EEeecccchhhccCCC---hHHHHHHHHHcC-----CeEEEeecCCCC--------CHHH
Q psy15625        152 NVERWLRELRDHADQNIVI-MLVGNKSDLRHLRAVP---ADEAKTFAERNN-----LSFIETSALDST--------NVET  214 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~~Sa~~~~--------~i~~  214 (223)
                          .+..+..   .++|. ++++||+|+.+.....   .++++.+....+     ++++++||+++.        ++.+
T Consensus       119 ----~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~  191 (394)
T TIGR00485       119 ----HILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILE  191 (394)
T ss_pred             ----HHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHH
Confidence                1111221   24565 4689999986422211   235566666554     689999999875        3455


Q ss_pred             HHHHHH
Q psy15625        215 AFQNIL  220 (223)
Q Consensus       215 ~~~~i~  220 (223)
                      +++.+.
T Consensus       192 ll~~l~  197 (394)
T TIGR00485       192 LMDAVD  197 (394)
T ss_pred             HHHHHH
Confidence            665554

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.72  E-value=7.6e-17  Score=123.40  Aligned_cols=160  Identities=19%  Similarity=0.129  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----ccch---hhhcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----AITS---AYYRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~~~---~~~~~~~   85 (223)
                      .|+++|.||+|||||+++++..+.....+++.+..+.-..+.+ ...-+|.+-|+||..+-.    .+-.   ..+..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            4889999999999999999999887777787777666666666 334478999999954432    2222   3366778


Q ss_pred             EEEEEEeCCCccc---HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         86 GALLVYDIAKHLT---YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        86 ~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+++|+|++..+.   .+..+...+++..+..                                            .+  
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~--------------------------------------------~L--  273 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP--------------------------------------------KL--  273 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhH--------------------------------------------Hh--
Confidence            8888888886553   4444444444422111                                            11  


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         .++|.+||+||+|+....+......+.+....+.. .+++||.+++|++++...+.+.
T Consensus       274 ---~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~  331 (369)
T COG0536         274 ---AEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAEL  331 (369)
T ss_pred             ---ccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHH
Confidence               36899999999996542222233334444444544 2239999999999998887653

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.70  E-value=6.1e-17  Score=121.50  Aligned_cols=84  Identities=20%  Similarity=0.199  Sum_probs=57.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccc---------------------------c--ccccceeeeEEEEEEEcCeEEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNL---------------------------E--SKSTIGVEFATRSIQVDQKTIKAQ   63 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~   63 (223)
                      +|+++|..++|||||+.+|+...-..                           .  .....+++.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999996421100                           0  001223344444444555667899


Q ss_pred             EEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        64 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      +||+||+..+.......++.+|++++|+|.++.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~  113 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG  113 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence            999999876665555566778888888888764

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.69  E-value=6.9e-16  Score=124.40  Aligned_cols=84  Identities=21%  Similarity=0.305  Sum_probs=60.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE---------------------c-CeEEEEEEEeCCC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---------------------D-QKTIKAQIWDTAG   69 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~D~~G   69 (223)
                      ++|+++|.||||||||+|+|++..+.....+..+.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999998876544454444444433221                     1 2346789999999


Q ss_pred             Cc----cccccchhh---hcCCcEEEEEEeCCC
Q psy15625         70 QE----RYRAITSAY---YRGAVGALLVYDIAK   95 (223)
Q Consensus        70 ~~----~~~~~~~~~---~~~~~~~i~v~d~~~   95 (223)
                      ..    ....+...+   ++.+|++++|+|+++
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~  114 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASG  114 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            53    233344444   899999999999983

>CHL00071 tufA elongation factor Tu

Probab=99.69  E-value=5e-16  Score=126.61  Aligned_cols=149  Identities=16%  Similarity=0.142  Sum_probs=93.8

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccccc--------------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--------------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      +++.++|+++|.+++|||||+++|++......              .....+++.......+......+.++|+||+.++
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            45679999999999999999999997522100              0112344444444445555567889999998766


Q ss_pred             cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625         74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV  153 (223)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  153 (223)
                      -......+..+|++++|+|......-...                                                   
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~---------------------------------------------------  117 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQTK---------------------------------------------------  117 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHHHH---------------------------------------------------
Confidence            55555556777888888887653321111                                                   


Q ss_pred             HHHHHHhhhccCCCce-EEEeecccchhhccCC---ChHHHHHHHHHcC-----CeEEEeecCCCCC
Q psy15625        154 ERWLRELRDHADQNIV-IMLVGNKSDLRHLRAV---PADEAKTFAERNN-----LSFIETSALDSTN  211 (223)
Q Consensus       154 ~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~  211 (223)
                       ..+..+..   .++| +++++||+|+.+....   ..+++..+....+     ++++++||.++.+
T Consensus       118 -~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        118 -EHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             -HHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence             11111221   2567 7789999998642221   1234555555443     6799999999863

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.69  E-value=9.2e-16  Score=113.32  Aligned_cols=154  Identities=13%  Similarity=0.185  Sum_probs=85.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCccccccccccee---eeEEEEEEEcCeEEEEEEEeCCCCccccccchhh-----hc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV---EFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY-----YR   82 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~-----~~   82 (223)
                      .+||+++|.+|+|||||+|+|++...........+.   +.....+... ....+.+||+||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            378999999999999999999986554322222221   1111111111 12368999999965432222222     44


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      ++|.++++.+.    .+...+                                                  ..++..+..
T Consensus        80 ~~d~~l~v~~~----~~~~~d--------------------------------------------------~~~~~~l~~  105 (197)
T cd04104          80 EYDFFIIISST----RFSSND--------------------------------------------------VKLAKAIQC  105 (197)
T ss_pred             CcCEEEEEeCC----CCCHHH--------------------------------------------------HHHHHHHHH
Confidence            55555554221    111111                                                  133333333


Q ss_pred             ccCCCceEEEeecccchhhccC-----------CChHHHHHHHH----HcC---CeEEEeecC--CCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRA-----------VPADEAKTFAE----RNN---LSFIETSAL--DSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~----~~~---~~~~~~Sa~--~~~~i~~~~~~i~~~  222 (223)
                      .   +.|+++|+||+|+.....           ...++.++...    ..+   .+++.+|+.  .++++..+.+.|+..
T Consensus       106 ~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~  182 (197)
T cd04104         106 M---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKD  182 (197)
T ss_pred             h---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHH
Confidence            2   578999999999842111           01112222222    222   258899998  579999999988753

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.69  E-value=6e-16  Score=116.09  Aligned_cols=26  Identities=35%  Similarity=0.631  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNL   38 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~   38 (223)
                      ||+++|..++|||||++++....+..
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~   26 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDN   26 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCC
Confidence            68999999999999999999765543

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04169 RF3 RF3 subfamily

Probab=99.68  E-value=1.3e-15  Score=117.17  Aligned_cols=86  Identities=19%  Similarity=0.261  Sum_probs=62.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccccccc--------------------ccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK--------------------STIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      .+|+++|++|+|||||+++|+...-.....                    ...+.++......+.+....+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999998531110000                    011234445555667777899999999998


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCcc
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      ++.......++.+|++++|+|.++..
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~  108 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGV  108 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCc
Confidence            87776667788999999999987653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=3.8e-16  Score=120.81  Aligned_cols=88  Identities=23%  Similarity=0.280  Sum_probs=59.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccccccc------c----------cceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESK------S----------TIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI   76 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   76 (223)
                      +|+++|.+|+|||||+++|+.........      .          ..+.+.......+.+....+.+|||||+.++...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997532111000      0          0011222222334445568899999998877777


Q ss_pred             chhhhcCCcEEEEEEeCCCcccHH
Q psy15625         77 TSAYYRGAVGALLVYDIAKHLTYE  100 (223)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~  100 (223)
                      ...+++.+|++++|+|.+......
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~  104 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVG  104 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHH
Confidence            778888999999999988765543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00049 elongation factor Tu; Reviewed

Probab=99.66  E-value=2.4e-15  Score=122.06  Aligned_cols=159  Identities=16%  Similarity=0.153  Sum_probs=99.3

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccc--------------cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL--------------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      ..+.++|+++|..++|||||+++|++.....              ......+++.......+......+.++||||+.++
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            3457999999999999999999998732110              00113344555555555555667899999998766


Q ss_pred             cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625         74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV  153 (223)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  153 (223)
                      ..........+|++++|+|..........                                                   
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~---------------------------------------------------  117 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMPQTR---------------------------------------------------  117 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchHHH---------------------------------------------------
Confidence            55455556777888888887654321111                                                   


Q ss_pred             HHHHHHhhhccCCCceEE-EeecccchhhccCC---ChHHHHHHHHHc-----CCeEEEeecCCCC----------CHHH
Q psy15625        154 ERWLRELRDHADQNIVIM-LVGNKSDLRHLRAV---PADEAKTFAERN-----NLSFIETSALDST----------NVET  214 (223)
Q Consensus       154 ~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~~~~~~~Sa~~~~----------~i~~  214 (223)
                       ..+..+..   .++|.+ +++||+|+.+....   ...++..+....     +++++++||+++.          ++.+
T Consensus       118 -~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~  193 (396)
T PRK00049        118 -EHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILE  193 (396)
T ss_pred             -HHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHH
Confidence             11122222   257876 58999998642111   112344444443     3679999999875          5678


Q ss_pred             HHHHHHh
Q psy15625        215 AFQNILT  221 (223)
Q Consensus       215 ~~~~i~~  221 (223)
                      +++.|.+
T Consensus       194 ll~~l~~  200 (396)
T PRK00049        194 LMDAVDS  200 (396)
T ss_pred             HHHHHHh
Confidence            8887764

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=8.2e-16  Score=118.38  Aligned_cols=85  Identities=18%  Similarity=0.213  Sum_probs=60.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccc-----c-----------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNL-----E-----------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI   76 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   76 (223)
                      +|+++|.+|+|||||+++|+...-..     .           .....+++.......+.+....+.+|||||+.++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            58999999999999999997421100     0           0012234444444455556678999999998887777


Q ss_pred             chhhhcCCcEEEEEEeCCCcc
Q psy15625         77 TSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      ....++.+|++++|+|..+..
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~  101 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGV  101 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCC
Confidence            777888888888888887644

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.65  E-value=2.9e-15  Score=111.95  Aligned_cols=88  Identities=17%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccccc----------------ccccceeeeEEEEEEEc--------CeEEEEEEEeCC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVD--------QKTIKAQIWDTA   68 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~   68 (223)
                      +|+++|..++|||||+.+|+...-...                ....+++......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            699999999999999999976431100                00111111112222232        347789999999


Q ss_pred             CCccccccchhhhcCCcEEEEEEeCCCcccHH
Q psy15625         69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYE  100 (223)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  100 (223)
                      |+.++......+++.+|++++|+|..+.....
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~  113 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQ  113 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHH
Confidence            99999998899999999999999998765443

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PLN03126 Elongation factor Tu; Provisional

Probab=99.65  E-value=3.4e-15  Score=123.10  Aligned_cols=149  Identities=17%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcc------cc--------cccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF------NL--------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      ..++.++|+++|.+++|||||+++|+....      ..        ......+++.......+......+.++|+||+.+
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            456789999999999999999999985211      11        1122234444444444555556889999999988


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                      |..........+|++++|+|..+...-...+                                                 
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e-------------------------------------------------  187 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQTKE-------------------------------------------------  187 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-------------------------------------------------
Confidence            7666666677888888888877643222111                                                 


Q ss_pred             hHHHHHHhhhccCCCce-EEEeecccchhhccCC---ChHHHHHHHHHc-----CCeEEEeecCCCC
Q psy15625        153 VERWLRELRDHADQNIV-IMLVGNKSDLRHLRAV---PADEAKTFAERN-----NLSFIETSALDST  210 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~~~~~~~Sa~~~~  210 (223)
                         ++..+..   .++| +++++||+|+.+....   ..+++..+....     +++++++|+.++.
T Consensus       188 ---~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        188 ---HILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             ---HHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence               1111221   2567 7789999998642211   122455555543     4679999998874

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.65  E-value=4.8e-15  Score=121.66  Aligned_cols=158  Identities=14%  Similarity=0.133  Sum_probs=103.7

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCccc--------------c---------------cccccceeeeEEEEEEEcC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------------L---------------ESKSTIGVEFATRSIQVDQ   57 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~---------------~~~~~~~~~~~~~~~~~~~   57 (223)
                      .+.+.++|+++|..++|||||+.+|+...-.              .               .....-+.+.......+..
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            3567899999999999999999998742110              0               0011224455555556667


Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG  137 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
                      ....+.++|+||+.+|.......+..+|++++|+|..+.. ++....|..+.+                           
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~---------------------------  134 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTR---------------------------  134 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHH---------------------------
Confidence            7778999999999999888888899999999999987631 211100000000                           


Q ss_pred             eEEEeecccccchhhhHHHHHHhhhccCCCc-eEEEeecccchhhccCC-------ChHHHHHHHHHcC-----CeEEEe
Q psy15625        138 ALLVYDIAKHLTYENVERWLRELRDHADQNI-VIMLVGNKSDLRHLRAV-------PADEAKTFAERNN-----LSFIET  204 (223)
Q Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~-------~~~~~~~~~~~~~-----~~~~~~  204 (223)
                                       ..+....   ..++ ++++++||+|+.+. .+       ..++++.++.+.|     ++++++
T Consensus       135 -----------------eh~~~~~---~~gi~~iIV~vNKmD~~~~-~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipi  193 (447)
T PLN00043        135 -----------------EHALLAF---TLGVKQMICCCNKMDATTP-KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPI  193 (447)
T ss_pred             -----------------HHHHHHH---HcCCCcEEEEEEcccCCch-hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEE
Confidence                             0111111   1255 57889999997521 11       1345666666665     569999


Q ss_pred             ecCCCCCHH
Q psy15625        205 SALDSTNVE  213 (223)
Q Consensus       205 Sa~~~~~i~  213 (223)
                      ||++|.|+.
T Consensus       194 Sa~~G~ni~  202 (447)
T PLN00043        194 SGFEGDNMI  202 (447)
T ss_pred             ecccccccc
Confidence            999999985

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.65  E-value=7e-16  Score=115.07  Aligned_cols=171  Identities=18%  Similarity=0.194  Sum_probs=105.7

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      +-.+..+++|+++|.+|+|||||||+|+.....+...-..+.+....... ......+.+||+||..+...-..      
T Consensus        33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~-~~~~~~l~lwDtPG~gdg~~~D~------  105 (296)
T COG3596          33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL-SYDGENLVLWDTPGLGDGKDKDA------  105 (296)
T ss_pred             hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-hccccceEEecCCCcccchhhhH------
Confidence            34466789999999999999999999998776666655555555444332 23335789999999654322111      


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                                     +.-+.++                       .++...|.+++++++.+..-..+...+..-+... 
T Consensus       106 ---------------~~r~~~~-----------------------d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~-  146 (296)
T COG3596         106 ---------------EHRQLYR-----------------------DYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG-  146 (296)
T ss_pred             ---------------HHHHHHH-----------------------HHhhhccEEEEeccCCCccccCCHHHHHHHHHhc-
Confidence                           0111111                       1234466677777777665555543333333322 


Q ss_pred             CCCceEEEeecccchhhcc-------CCChHHHHHHHHH----------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLR-------AVPADEAKTFAER----------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~-------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       .+.|+++++|++|...+-       ......++++.++          .--+++..+...++|++++...++++
T Consensus       147 -~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~  220 (296)
T COG3596         147 -LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITA  220 (296)
T ss_pred             -cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHh
Confidence             248999999999986531       0111122222211          12368888899999999999998875

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.65  E-value=1e-15  Score=126.51  Aligned_cols=90  Identities=21%  Similarity=0.237  Sum_probs=59.7

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc-------------------------------cccceeeeEEEEEEE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-------------------------------KSTIGVEFATRSIQV   55 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~   55 (223)
                      .++..++|+++|..++|||||+++|+...-....                               ...-+.+.......+
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            4567799999999999999999999754211100                               001122333444445


Q ss_pred             cCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         56 DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        56 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      ......+.++||||+..+..........+|++++|+|....
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G  143 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG  143 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            55566889999999877654444456777888888887553

>cd01850 CDC_Septin CDC/Septin

Probab=99.64  E-value=2.9e-15  Score=115.75  Aligned_cols=169  Identities=15%  Similarity=0.214  Sum_probs=98.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccc----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY   80 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   80 (223)
                      .++|+++|.+|+|||||+|+|++..+....          .++.+.+.....+..++..+.+.+|||||..+...     
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-----   78 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-----   78 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-----
Confidence            589999999999999999999998765442          23434444444555567778999999999543321     


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHh-cCCceeEEEeCCCccccccccccceeEEEeecccc-cchhhhHHHHH
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDH-ADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH-LTYENVERWLR  158 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~  158 (223)
                                    +...+..+..++++.-+. -.....+     .......-.++++++++++++.. ....++ ..+.
T Consensus        79 --------------~~~~~~~i~~yi~~q~~~~l~~e~~~-----~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~-~~lk  138 (276)
T cd01850          79 --------------NSDCWKPIVDYIDDQFDQYLREESRI-----KRNPRIPDTRVHACLYFIEPTGHGLKPLDI-EFMK  138 (276)
T ss_pred             --------------chhhHHHHHHHHHHHHHHHHHHHhhh-----cccccCCCCceEEEEEEEeCCCCCCCHHHH-HHHH
Confidence                          122333333322222110 0000000     00001112368888999887752 222222 2233


Q ss_pred             HhhhccCCCceEEEeecccchhh--ccCCChHHHHHHHHHcCCeEEEeecCC
Q psy15625        159 ELRDHADQNIVIMLVGNKSDLRH--LRAVPADEAKTFAERNNLSFIETSALD  208 (223)
Q Consensus       159 ~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~  208 (223)
                      .+   .. ++|+++|+||+|+..  ......+.+++.+..++++++......
T Consensus       139 ~l---~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         139 RL---SK-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HH---hc-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            33   22 689999999999843  222344566677777888888766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=5.8e-15  Score=119.43  Aligned_cols=152  Identities=19%  Similarity=0.220  Sum_probs=110.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC---eEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ---KTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      +.=|.++|+-.-|||||+.++.+..+...-.-.  ++......++..   ..-.+.|+|||||..|..++..-.+-+|.+
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGG--ITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGG--ITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCc--eeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            345889999999999999999998876554444  344444333332   334789999999999999999888889999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|++..+.---+.++                                                       .+......+
T Consensus        83 ILVVa~dDGv~pQTiE-------------------------------------------------------AI~hak~a~  107 (509)
T COG0532          83 ILVVAADDGVMPQTIE-------------------------------------------------------AINHAKAAG  107 (509)
T ss_pred             EEEEEccCCcchhHHH-------------------------------------------------------HHHHHHHCC
Confidence            9999988744333332                                                       223333358


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcC---------CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNN---------LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|++|++||+|.++   ........-..++|         ..++++||++|+|++++++.+.-.
T Consensus       108 vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~  168 (509)
T COG0532         108 VPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLL  168 (509)
T ss_pred             CCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence            99999999999874   33344444444444         369999999999999999987643

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.64  E-value=1.1e-14  Score=121.62  Aligned_cols=90  Identities=20%  Similarity=0.241  Sum_probs=64.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccccc---------------c-----cccceeeeEEEEEEEcCeEEEEEEEeC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------S-----KSTIGVEFATRSIQVDQKTIKAQIWDT   67 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~   67 (223)
                      .....+|+++|++++|||||.++|+...-...               .     ...-+.++......+.+..+.+.+|||
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT   86 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT   86 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence            34567999999999999999999974111000               0     011133444444556666788999999


Q ss_pred             CCCccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625         68 AGQERYRAITSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        68 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      ||+.++......+++.+|++++|+|..+..
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv  116 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGV  116 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCC
Confidence            999888876777889999999999988754

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.63  E-value=2.2e-15  Score=129.21  Aligned_cols=155  Identities=23%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc--------------c-----------------ccceeeeEEEEEE
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--------------K-----------------STIGVEFATRSIQ   54 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------------~-----------------~~~~~~~~~~~~~   54 (223)
                      ....+.++|+++|.+++|||||+++|+...-....              .                 ..-+.+.......
T Consensus        19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~   98 (632)
T PRK05506         19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY   98 (632)
T ss_pred             ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence            34556789999999999999999999864321110              0                 0012223333333


Q ss_pred             EcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccc
Q psy15625         55 VDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRG  134 (223)
Q Consensus        55 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (223)
                      +......+.++||||+..+.......+..+|++++|+|......-                                   
T Consensus        99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-----------------------------------  143 (632)
T PRK05506         99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-----------------------------------  143 (632)
T ss_pred             EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-----------------------------------
Confidence            444555788999999876654444456677777777776543211                                   


Q ss_pred             cceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC----ChHHHHHHHHHcC---CeEEEeecC
Q psy15625        135 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV----PADEAKTFAERNN---LSFIETSAL  207 (223)
Q Consensus       135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~---~~~~~~Sa~  207 (223)
                                      +.. .....+...  ...|+++++||+|+.+....    ...++..+....+   ++++++||+
T Consensus       144 ----------------~t~-e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~  204 (632)
T PRK05506        144 ----------------QTR-RHSFIASLL--GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISAL  204 (632)
T ss_pred             ----------------cCH-HHHHHHHHh--CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecc
Confidence                            110 001111111  13578999999998641111    1123333344444   359999999


Q ss_pred             CCCCHHH
Q psy15625        208 DSTNVET  214 (223)
Q Consensus       208 ~~~~i~~  214 (223)
                      +|.|+.+
T Consensus       205 ~g~ni~~  211 (632)
T PRK05506        205 KGDNVVT  211 (632)
T ss_pred             cCCCccc
Confidence            9999873

>KOG0462|consensus

Probab=99.62  E-value=9.9e-15  Score=117.81  Aligned_cols=162  Identities=23%  Similarity=0.248  Sum_probs=113.0

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCccc---------------ccccccceeeeEEEEEE-EcCeEEEEEEEeCCC
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN---------------LESKSTIGVEFATRSIQ-VDQKTIKAQIWDTAG   69 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~G   69 (223)
                      ++.++..++.|+-.-.=|||||..+|+...-.               ......+++--.+..+. .+++.+.++++||||
T Consensus        55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG  134 (650)
T KOG0462|consen   55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG  134 (650)
T ss_pred             CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence            44566788999999999999999999864321               11122333322222222 236678999999999


Q ss_pred             CccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccc
Q psy15625         70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT  149 (223)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  149 (223)
                      |.+|..-...-+..|+++++|+|.+.....+.+..++..+                                        
T Consensus       135 HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----------------------------------------  174 (650)
T KOG0462|consen  135 HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----------------------------------------  174 (650)
T ss_pred             cccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----------------------------------------
Confidence            9999988888888888888888887766666665333322                                        


Q ss_pred             hhhhHHHHHHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        150 YENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                                 +    .+.-+|.|+||+|++..+.- -..+.+.+....+.+++.+|||+|.|++++++.|++.
T Consensus       175 -----------e----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~r  233 (650)
T KOG0462|consen  175 -----------E----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRR  233 (650)
T ss_pred             -----------H----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhh
Confidence                       2    37788999999999862211 1123333333445679999999999999999999874

>KOG0077|consensus

Probab=99.62  E-value=1.5e-15  Score=104.40  Aligned_cols=157  Identities=15%  Similarity=0.225  Sum_probs=112.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ++.-|++++|..|+|||||++.|....... +.||.-.+  ...  +.-.++.++.+|.+|+...+..++.|+..+++++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPT--SE~--l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEE--LSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCC--hHH--heecCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            456799999999999999999998876533 33332211  111  2224568899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +.+|+.+.+.+......++.+..                                                .+  .-.+.
T Consensus        93 ~lvda~d~er~~es~~eld~ll~------------------------------------------------~e--~la~v  122 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLS------------------------------------------------DE--SLATV  122 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHh------------------------------------------------HH--HHhcC
Confidence            99999998888877754443311                                                11  11378


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH------cC-----------CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER------NN-----------LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~-----------~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++.+||+|.+.  ..++++.+....-      .+           ++++.||...+.+..+.|.|+.+.
T Consensus       123 p~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  123 PFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             cceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence            9999999999876  2344444333211      11           248889999988888888877653

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.61  E-value=1.2e-14  Score=119.30  Aligned_cols=89  Identities=16%  Similarity=0.116  Sum_probs=66.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcc--cc---------------------------cccccceeeeEEEEEEEcCe
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF--NL---------------------------ESKSTIGVEFATRSIQVDQK   58 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~   58 (223)
                      +.+.++|+++|..++|||||+.+|+...-  ..                           ......+.+.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            56789999999999999999999976211  00                           00112244555555666777


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      ...+.++|+||+.+|..........+|++++|+|....
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G  121 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG  121 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence            77899999999988877777778889999999998764

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.61  E-value=5.5e-15  Score=120.36  Aligned_cols=149  Identities=22%  Similarity=0.206  Sum_probs=90.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccc-------------------------------cccceeeeEEEEEEEcCeEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLES-------------------------------KSTIGVEFATRSIQVDQKTI   60 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   60 (223)
                      +||+++|+.++|||||+.+|+...-....                               ...-+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999643211000                               00112233444444555566


Q ss_pred             EEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEE
Q psy15625         61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALL  140 (223)
Q Consensus        61 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (223)
                      .+.++||||+.+|.......+..+|++++|+|......-+..+                                     
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-------------------------------------  123 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-------------------------------------  123 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-------------------------------------
Confidence            8899999998877655555677888888888876543211111                                     


Q ss_pred             EeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCC----hHHHHHHHHHcC---CeEEEeecCCCCCHH
Q psy15625        141 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP----ADEAKTFAERNN---LSFIETSALDSTNVE  213 (223)
Q Consensus       141 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~  213 (223)
                                    . +..+...  ...++++++||+|+.+.....    .++...+....+   ++++++||++|.|++
T Consensus       124 --------------~-~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~  186 (406)
T TIGR02034       124 --------------H-SYIASLL--GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV  186 (406)
T ss_pred             --------------H-HHHHHHc--CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence                          0 1111111  124688999999986422111    123333334444   469999999999987


Q ss_pred             H
Q psy15625        214 T  214 (223)
Q Consensus       214 ~  214 (223)
                      +
T Consensus       187 ~  187 (406)
T TIGR02034       187 S  187 (406)
T ss_pred             c
Confidence            5

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.61  E-value=1.8e-14  Score=107.74  Aligned_cols=158  Identities=18%  Similarity=0.264  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccce--eeeEEEEEEEcCeEEEEEEEeCCCCccccc-----cchhhhcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAGQERYRA-----ITSAYYRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~~   85 (223)
                      ||+++|+.++||||+.+.+..+..+... ...+  .+.....+. ....+.+++||+||+..+-.     .....++++.
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~   78 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG   78 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence            7999999999999999999876543322 2222  333333332 23456899999999865433     4566799999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|+|+...+..+.+..+.+.+                                                ..+.... 
T Consensus        79 ~LIyV~D~qs~~~~~~l~~~~~~i------------------------------------------------~~l~~~s-  109 (232)
T PF04670_consen   79 VLIYVFDAQSDDYDEDLAYLSDCI------------------------------------------------EALRQYS-  109 (232)
T ss_dssp             EEEEEEETT-STCHHHHHHHHHHH------------------------------------------------HHHHHHS-
T ss_pred             EEEEEEEcccccHHHHHHHHHHHH------------------------------------------------HHHHHhC-
Confidence            999999999666666666544433                                                2233333 


Q ss_pred             CCceEEEeecccchhh--ccCCC----hHHHHHHHHHcC---CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRH--LRAVP----ADEAKTFAERNN---LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~--~~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++.+.|+++|+|+..  .+...    .+.+.+.+...+   +.++.+|.-+ +.+-+.|..+++.
T Consensus       110 p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~  174 (232)
T PF04670_consen  110 PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQK  174 (232)
T ss_dssp             TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHT
T ss_pred             CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHH
Confidence            3789999999999843  11111    122333333445   6678877776 6888888888763

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.61  E-value=1.3e-14  Score=119.10  Aligned_cols=91  Identities=18%  Similarity=0.168  Sum_probs=61.4

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcc------ccc--------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEF------NLE--------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      ....+.++|+++|..++|||||+++|.+...      ...        .....+++.......+......+.++||||+.
T Consensus        56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence            3456789999999999999999999973210      000        11123445555555566666688999999987


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCc
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      ++-.........+|++++|+|....
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g  160 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDG  160 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCC
Confidence            6654444445567888888876553

>KOG1191|consensus

Probab=99.60  E-value=1e-14  Score=116.44  Aligned_cols=62  Identities=26%  Similarity=0.388  Sum_probs=52.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      ..++|+++|+||||||||+|+|.+....... +-.|++.+.....++-.++++.+.||+|..+
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~~G~~v~L~DTAGiRe  328 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE  328 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeecCCeEEEEEecccccc
Confidence            3589999999999999999999999887666 5567777777777777888999999999544

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.60  E-value=4e-14  Score=95.73  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      +|+|+|.+|+|||||+|+|++.... ....+..+.......+.+++.  .+.++||||..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~   58 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGIN   58 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCS
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCc
Confidence            6999999999999999999986432 222233333333333344444  45799999954

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK13351 elongation factor G; Reviewed

Probab=99.60  E-value=2.3e-14  Score=124.23  Aligned_cols=95  Identities=15%  Similarity=0.170  Sum_probs=67.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccc--------cc-----cc---ccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------LE-----SK---STIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      +...+|+++|..|+|||||+++|+...-.        ..     +.   ...+.+.......+.+....+.+|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            35679999999999999999999853210        00     00   0112223333333445567899999999998


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLTYENVE  103 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  103 (223)
                      +......+++.+|++++|+|.++........
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~  116 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTET  116 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence            8888888999999999999998876655443

>KOG1532|consensus

Probab=99.58  E-value=1.4e-14  Score=107.87  Aligned_cols=201  Identities=14%  Similarity=0.247  Sum_probs=120.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      .+..|+++|..|+|||||+++|..........+- -++.++....+... .++.+.|+..   |+.....|--+.++.|+
T Consensus        18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppY-viNLDPAv~~vpy~-aniDIRDtVk---YkEvMkqY~LGPNGgI~   92 (366)
T KOG1532|consen   18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPY-VINLDPAVRNVPYP-ANIDIRDTVK---YKEVMKQYQLGPNGGIV   92 (366)
T ss_pred             CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCe-EEeCCHHHhcCCCc-cCCchhhhhh---HHHHHHHhCCCCCcchh
Confidence            4578999999999999999999875543333211 12332322222222 2456666654   77777777777777763


Q ss_pred             EEeCCCcccH-HHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce--------------eEEEeeccc---ccchh
Q psy15625         90 VYDIAKHLTY-ENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG--------------ALLVYDIAK---HLTYE  151 (223)
Q Consensus        90 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~d~~~---~~~~~  151 (223)
                          +..+-| ..+.+..+-++++ .....-+++++|++...|.+.+.+              ++|++|...   +.++.
T Consensus        93 ----TsLNLF~tk~dqv~~~iek~-~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM  167 (366)
T KOG1532|consen   93 ----TSLNLFATKFDQVIELIEKR-AEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM  167 (366)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHh-hcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH
Confidence                222221 1222233333333 334778999999998888876655              345555433   33444


Q ss_pred             hhHHHHHHhhhccCCCceEEEeecccchhhcc----CCC-hHHHHHHHH---------------------HcCCeEEEee
Q psy15625        152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLR----AVP-ADEAKTFAE---------------------RNNLSFIETS  205 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----~~~-~~~~~~~~~---------------------~~~~~~~~~S  205 (223)
                      +  ..+........-+.|+|++.||+|+.+..    +.. .+.+++-..                     ..++..+-+|
T Consensus       168 S--NMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VS  245 (366)
T KOG1532|consen  168 S--NMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVS  245 (366)
T ss_pred             H--HHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEe
Confidence            3  44445555566789999999999986521    000 011111111                     1246789999


Q ss_pred             cCCCCCHHHHHHHHHhh
Q psy15625        206 ALDSTNVETAFQNILTA  222 (223)
Q Consensus       206 a~~~~~i~~~~~~i~~~  222 (223)
                      +.+|.|.+++|..+-+.
T Consensus       246 s~tG~G~ddf~~av~~~  262 (366)
T KOG1532|consen  246 SVTGEGFDDFFTAVDES  262 (366)
T ss_pred             cccCCcHHHHHHHHHHH
Confidence            99999999999987653

>PTZ00258 GTP-binding protein; Provisional

Probab=99.58  E-value=7.9e-14  Score=111.49  Aligned_cols=86  Identities=19%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeE---------------EEEEEEeCCCCccc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT---------------IKAQIWDTAGQERY   73 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~   73 (223)
                      ...++|+++|.||||||||+|+|++........|..+.+.....+.+...+               ..+.++|+||....
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            345799999999999999999999988766666776666666666554332               34899999995432


Q ss_pred             cc-------cchhhhcCCcEEEEEEeCC
Q psy15625         74 RA-------ITSAYYRGAVGALLVYDIA   94 (223)
Q Consensus        74 ~~-------~~~~~~~~~~~~i~v~d~~   94 (223)
                      ..       .....++.+|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            21       1123478899999999985

>KOG1145|consensus

Probab=99.57  E-value=4.2e-14  Score=114.28  Aligned_cols=152  Identities=18%  Similarity=0.205  Sum_probs=110.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      +.-|-++|.-.=|||||+.+|.+..+...-.-.++-.+.-..+.++ .+-.+.|.||||+..|..++..-....|.+++|
T Consensus       153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV  231 (683)
T KOG1145|consen  153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLV  231 (683)
T ss_pred             CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence            4568899999999999999999988765543333222323333344 335889999999999999998888888999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      +...|.---+.++                                                       .+......+.|+
T Consensus       232 VAadDGVmpQT~E-------------------------------------------------------aIkhAk~A~Vpi  256 (683)
T KOG1145|consen  232 VAADDGVMPQTLE-------------------------------------------------------AIKHAKSANVPI  256 (683)
T ss_pred             EEccCCccHhHHH-------------------------------------------------------HHHHHHhcCCCE
Confidence            9876643322222                                                       223333358999


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcC---------CeEEEeecCCCCCHHHHHHHHHh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNN---------LSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ++++||+|.++   ...+...+-....|         ++++++||++|.|++.+-+.+.-
T Consensus       257 VvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill  313 (683)
T KOG1145|consen  257 VVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL  313 (683)
T ss_pred             EEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence            99999999875   44555555554444         46999999999999999888764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.57  E-value=8.8e-14  Score=102.72  Aligned_cols=166  Identities=17%  Similarity=0.185  Sum_probs=89.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccccccc--ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ++|+++|.+|+|||||+|++++........  +..+..........  ....+.++||||..+.....            
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~--~~~~i~viDTPG~~d~~~~~------------   66 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW--DGRRVNVIDTPGLFDTSVSP------------   66 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE--CCeEEEEEECcCCCCccCCh------------
Confidence            479999999999999999999886543332  12222222222223  34578999999954432100            


Q ss_pred             EEeCCCcccHHHHHH-HHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC--
Q psy15625         90 VYDIAKHLTYENVER-WLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ--  166 (223)
Q Consensus        90 v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--  166 (223)
                                ..+.. ..+.+..                   .....++++++.++.. .+..+ ...+..+....+.  
T Consensus        67 ----------~~~~~~i~~~~~~-------------------~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~  115 (196)
T cd01852          67 ----------EQLSKEIVRCLSL-------------------SAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKV  115 (196)
T ss_pred             ----------HHHHHHHHHHHHh-------------------cCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHh
Confidence                      00000 0000000                   0123455555555544 23222 1223333322221  


Q ss_pred             CceEEEeecccchhhccCC------ChHHHHHHHHHcCCeEEEeec-----CCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAV------PADEAKTFAERNNLSFIETSA-----LDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~Sa-----~~~~~i~~~~~~i~~~  222 (223)
                      -.++++++|+.|......+      ....++.+....+-.++..+.     ..+.++.++++.|.++
T Consensus       116 ~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~  182 (196)
T cd01852         116 LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESM  182 (196)
T ss_pred             HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHH
Confidence            2478899999996542211      124455555665656655554     4577888888887654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.56  E-value=7.3e-14  Score=120.92  Aligned_cols=92  Identities=16%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccc-----ccc-----------ccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----ESK-----------STIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      .+...+|+++|.+|+|||||+++|+...-..     ...           ...+++.......+.+....+.+|||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            3446799999999999999999997422110     000           112334444444455556789999999998


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKHLTY   99 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~   99 (223)
                      ++.......++.+|++++|+|..+....
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~  114 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQP  114 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCCh
Confidence            8777777788888999999988775443

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=9.7e-15  Score=113.85  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC----------------eEEEEEEEeCCCCc---
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ----------------KTIKAQIWDTAGQE---   71 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~D~~G~~---   71 (223)
                      .++++++|.||||||||+|+++.......+.|+.++++......+..                ....++++|++|..   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999999998777778888877776655421                23468999999842   


Q ss_pred             -c---ccccchhhhcCCcEEEEEEeCCC
Q psy15625         72 -R---YRAITSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        72 -~---~~~~~~~~~~~~~~~i~v~d~~~   95 (223)
                       +   .++.....+|.+|+++.|+++++
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence             2   23444455899999999999984

>KOG1490|consensus

Probab=99.55  E-value=2.9e-14  Score=114.11  Aligned_cols=171  Identities=18%  Similarity=0.156  Sum_probs=113.3

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      +...++.-.++++|.||+|||||+|.++.......+.++.+.......  ++.....+++.||||.-+.-.-        
T Consensus       162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plE--------  231 (620)
T KOG1490|consen  162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEE--------  231 (620)
T ss_pred             CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchh--------
Confidence            344566788999999999999999999998887666666544444433  3556667899999994321110        


Q ss_pred             cEEEEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc--cchhhhHHHHHHhh
Q psy15625         85 VGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH--LTYENVERWLRELR  161 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~  161 (223)
                                +.+..+... .-+..+                         -.+++|++|.+..  .+.....+.+..+.
T Consensus       232 ----------drN~IEmqsITALAHL-------------------------raaVLYfmDLSe~CGySva~QvkLfhsIK  276 (620)
T KOG1490|consen  232 ----------DRNIIEMQIITALAHL-------------------------RSAVLYFMDLSEMCGYSVAAQVKLYHSIK  276 (620)
T ss_pred             ----------hhhHHHHHHHHHHHHh-------------------------hhhheeeeechhhhCCCHHHHHHHHHHhH
Confidence                      011111110 111222                         2347777787755  34455556666676


Q ss_pred             hccCCCceEEEeecccchhhccCCChHH---HHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADE---AKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      .... ++|+|+|+||+|+.....+..+.   +..+....+++++++|+.+.+|+.++....++
T Consensus       277 pLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe  338 (620)
T KOG1490|consen  277 PLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACE  338 (620)
T ss_pred             HHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHH
Confidence            6654 78999999999998766665543   33333445689999999999999998877654

>PRK12739 elongation factor G; Reviewed

Probab=99.54  E-value=1.7e-13  Score=118.58  Aligned_cols=90  Identities=16%  Similarity=0.163  Sum_probs=61.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccc-----ccc-----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN-----LES-----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      +...+|+++|.+++|||||+++|+...-.     ...           ....+++.......+.+....+.++||||+.+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            45678999999999999999999752110     000           01122333333333444566889999999887


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCccc
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLT   98 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~   98 (223)
                      +.......++.+|++++|+|......
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~  111 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVE  111 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCC
Confidence            77767777888888888888876543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.54  E-value=6.9e-14  Score=100.26  Aligned_cols=80  Identities=29%  Similarity=0.385  Sum_probs=51.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccccccchh---hhcCCcEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERYRAITSA---YYRGAVGA   87 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~---~~~~~~~~   87 (223)
                      -.|+++|++|+|||+|+.+|..+........-   .. .....+ ......+.++|+||+...+.....   +...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~-n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---EN-NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S---SE-EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cC-CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            46899999999999999999998654333221   11 111212 223447899999999887754433   47788899


Q ss_pred             EEEEeCCC
Q psy15625         88 LLVYDIAK   95 (223)
Q Consensus        88 i~v~d~~~   95 (223)
                      ++|+|.+.
T Consensus        80 IfvvDSs~   87 (181)
T PF09439_consen   80 IFVVDSST   87 (181)
T ss_dssp             EEEEETTT
T ss_pred             EEEEeCcc
Confidence            99999874

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK09866 hypothetical protein; Provisional

Probab=99.53  E-value=1.5e-13  Score=114.20  Aligned_cols=103  Identities=14%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             eeEEEeCCCcccc-----------ccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC
Q psy15625        117 IVIMLVGPPSLLR-----------RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV  185 (223)
Q Consensus       117 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~  185 (223)
                      .-++++++|+...           +....+|++++++|+....+..+. .....+.... .+.|+++|+||+|+.+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~-K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG-QSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence            4456677776632           345789999999999886555542 2333333321 13599999999998542222


Q ss_pred             ChHHHHHHHH----Hc---CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        186 PADEAKTFAE----RN---NLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       186 ~~~~~~~~~~----~~---~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ..+....+..    +.   ...++++||+.|.|++++++.|.+
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            3445555432    22   235999999999999999999875

>KOG3905|consensus

Probab=99.53  E-value=4e-13  Score=102.40  Aligned_cols=206  Identities=17%  Similarity=0.238  Sum_probs=126.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc--CeEEEEEEEeCCCCccccccchhhhcCC----c
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD--QKTIKAQIWDTAGQERYRAITSAYYRGA----V   85 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~----~   85 (223)
                      -+|+|+|..++|||||+.+|.+.+   ...+..+..|-...+.-+  +...++.+|-..|...+..+....+...    .
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            479999999999999999999876   333444555555544432  3345688999999877777777665543    4


Q ss_pred             EEEEEEeCCCccc-HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecc-----------cccchhhh
Q psy15625         86 GALLVYDIAKHLT-YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIA-----------KHLTYENV  153 (223)
Q Consensus        86 ~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----------~~~~~~~~  153 (223)
                      .++++.+++++.. +++++.|..-++++.+.--. -..+......++.+.-..++.+.+-.           .....++.
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i-~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKI-PPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            7789999999965 88899999999888764210 00000000001111111111111000           00000000


Q ss_pred             HHHHHHhhhccCCCceEEEeecccchhh----ccC-------CChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        154 ERWLRELRDHADQNIVIMLVGNKSDLRH----LRA-------VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       154 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      .-.+..=......++|++||++|||...    ..+       .....++.|+.++|...+++|+|...|++-+..+|.+
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence            0000000001123789999999999832    222       2334678889999999999999999999999999875

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.52  E-value=2e-13  Score=89.72  Aligned_cols=140  Identities=23%  Similarity=0.264  Sum_probs=88.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      |++++|..|+|||||++++.++.....  .+...++       +.+    -.+||||--                     
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAve~-------~d~----~~IDTPGEy---------------------   48 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAVEF-------NDK----GDIDTPGEY---------------------   48 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhc--ccceeec-------cCc----cccCCchhh---------------------
Confidence            799999999999999999998764322  2222222       111    147999821                     


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                             -+-+.|+..+..                   ....+|.++++-.+.++++...-     .+...  ...|+|=
T Consensus        49 -------~~~~~~Y~aL~t-------------------t~~dadvi~~v~~and~~s~f~p-----~f~~~--~~k~vIg   95 (148)
T COG4917          49 -------FEHPRWYHALIT-------------------TLQDADVIIYVHAANDPESRFPP-----GFLDI--GVKKVIG   95 (148)
T ss_pred             -------hhhhHHHHHHHH-------------------HhhccceeeeeecccCccccCCc-----ccccc--cccceEE
Confidence                   111112111111                   11235556666666665544331     11111  2456999


Q ss_pred             eecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      |++|+|++++  ...+..++|..+-|.. +|++|+.++.|++++++.|..
T Consensus        96 vVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          96 VVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             EEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            9999999863  3446777888888874 999999999999999999875

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.52  E-value=1.2e-13  Score=113.30  Aligned_cols=160  Identities=18%  Similarity=0.166  Sum_probs=96.3

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcc---cccccccceeeeEEEEE---------------EEcC------------
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF---NLESKSTIGVEFATRSI---------------QVDQ------------   57 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~------------   57 (223)
                      ..+.++|+++|.-..|||||+.+|++...   .......++.+......               .++.            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            35679999999999999999999997432   11111111111100000               0100            


Q ss_pred             ----eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccc
Q psy15625         58 ----KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY  132 (223)
Q Consensus        58 ----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (223)
                          -...+.++|+||+..|..........+|++++|+|.... ...+..+                             
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-----------------------------  161 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-----------------------------  161 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-----------------------------
Confidence                023678999999887765555566788888888888753 1111111                             


Q ss_pred             cccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH---cCCeEEEeecC
Q psy15625        133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER---NNLSFIETSAL  207 (223)
Q Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~  207 (223)
                                             .+..+...  .-.|+++|+||+|+.+....  ..++++.+...   .+.+++++||+
T Consensus       162 -----------------------hl~i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~  216 (460)
T PTZ00327        162 -----------------------HLAAVEIM--KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQ  216 (460)
T ss_pred             -----------------------HHHHHHHc--CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCC
Confidence                                   01111111  12468999999998642111  11233333322   35789999999


Q ss_pred             CCCCHHHHHHHHHh
Q psy15625        208 DSTNVETAFQNILT  221 (223)
Q Consensus       208 ~~~~i~~~~~~i~~  221 (223)
                      +|.|++++++.|.+
T Consensus       217 ~G~nI~~Ll~~L~~  230 (460)
T PTZ00327        217 LKYNIDVVLEYICT  230 (460)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999999874

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.52  E-value=2e-13  Score=101.95  Aligned_cols=183  Identities=17%  Similarity=0.148  Sum_probs=112.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-----cccchh-hhcC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-----RAITSA-YYRG   83 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~-~~~~   83 (223)
                      +.+.|+|.|+||+|||||+++|......                  .+..+-+.-+|.......     ...+.. ....
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~------------------~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d   89 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRE------------------RGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRD   89 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHH------------------TT--EEEEEE-GGGGCC---SS--GGGCHHHHTS
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhh------------------cCCceEEEEECCCCCCCCCcccccHHHhcCcCCC
Confidence            5689999999999999999999765421                  122334455564422111     112222 1223


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhc----CCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHA----DQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE  159 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (223)
                      ..  +|+.++....+...+.....+....+    -+.+.++.++..+..-.....+|.+++++-+..+...+.++..+-+
T Consensus        90 ~~--vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE  167 (266)
T PF03308_consen   90 PG--VFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIME  167 (266)
T ss_dssp             TT--EEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHH
T ss_pred             CC--EEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhh
Confidence            33  44566666666666655444444433    3444456677777777888999999999999999999988887777


Q ss_pred             hhhccCCCceEEEeecccchhhccCCChHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +.+        ++|+||+|.+..+. ...+.+.....       +..+++.+||.++.|++++++.|.+
T Consensus       168 iaD--------i~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~  227 (266)
T PF03308_consen  168 IAD--------IFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE  227 (266)
T ss_dssp             H-S--------EEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             hcc--------EEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            755        89999999765222 22333333321       1357999999999999999998865

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.52  E-value=6.8e-13  Score=105.82  Aligned_cols=157  Identities=21%  Similarity=0.252  Sum_probs=110.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcc---------------cccccccceeeeEEEEEEE---cCeEEEEEEEeCCC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF---------------NLESKSTIGVEFATRSIQV---DQKTIKAQIWDTAG   69 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G   69 (223)
                      .+...+..++-.-.=|||||..|+....-               .......+++-.....+.+   ++..+.++++||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            34556788899999999999999976321               1122234444444444433   45778999999999


Q ss_pred             CccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccc
Q psy15625         70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT  149 (223)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  149 (223)
                      |.+|..-....+..|.+.++++|.+-.-..+.+...+.                                          
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~Yl------------------------------------------  123 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL------------------------------------------  123 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHH------------------------------------------
Confidence            99998877777888888888888877666666653322                                          


Q ss_pred             hhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHH-HHHHHcCCe---EEEeecCCCCCHHHHHHHHHhh
Q psy15625        150 YENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK-TFAERNNLS---FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~---~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                               .+.    .+.-++-|+||+||+.   ...+..+ +.....|++   .+.||||+|.|++++++.|++.
T Consensus       124 ---------Ale----~~LeIiPViNKIDLP~---Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~  184 (603)
T COG0481         124 ---------ALE----NNLEIIPVLNKIDLPA---ADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEK  184 (603)
T ss_pred             ---------HHH----cCcEEEEeeecccCCC---CCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence                     222    2677889999999986   2333333 333345653   8999999999999999999863

>TIGR00503 prfC peptide chain release factor 3

Probab=99.52  E-value=2.6e-13  Score=113.43  Aligned_cols=90  Identities=20%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCc--ccc---c---------------ccccceeeeEEEEEEEcCeEEEEEEEe
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNE--FNL---E---------------SKSTIGVEFATRSIQVDQKTIKAQIWD   66 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~D   66 (223)
                      +.....+|+++|.+++|||||+++|+...  ...   .               .....+.++......+++....+.+||
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD   86 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD   86 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence            33456799999999999999999986311  100   0               001223445555566677778999999


Q ss_pred             CCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         67 TAGQERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        67 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      |||+.++.......++.+|++++|+|..+.
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~g  116 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKG  116 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence            999987776666678899999999998764

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.50  E-value=2e-14  Score=113.62  Aligned_cols=84  Identities=19%  Similarity=0.161  Sum_probs=62.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeE---------------EEEEEEeCCCCccccc-
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT---------------IKAQIWDTAGQERYRA-   75 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~~-   75 (223)
                      ++|+++|.||||||||+|+|++........|..+.++....+.+.+..               ..+.+.|+||...... 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            689999999999999999999988655555666666666666555432               2589999999543221 


Q ss_pred             ------cchhhhcCCcEEEEEEeCCC
Q psy15625         76 ------ITSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        76 ------~~~~~~~~~~~~i~v~d~~~   95 (223)
                            .....++.+|++++|+|.+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f~  108 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCFE  108 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence                  11224789999999999863

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.48  E-value=1.4e-12  Score=98.78  Aligned_cols=185  Identities=18%  Similarity=0.136  Sum_probs=121.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch----hhhcCCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS----AYYRGAV   85 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~----~~~~~~~   85 (223)
                      +...|+|+|.||+|||||+.+|......                  .+..+-+.-+|.......+++..    +--...+
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~------------------~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~  111 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRE------------------RGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVD  111 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHH------------------CCcEEEEEEECCCCCCCCccccccHhhHHhhccC
Confidence            3468999999999999999999765421                  22334455566443222222222    2222234


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcC-CceeE---EEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHAD-QNIVI---MLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      --+|+.++...-+...+....++....++ ...+.   +.++..+........+|.+++++-+..+...+.+++.+-++.
T Consensus       112 ~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia  191 (323)
T COG1703         112 PGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA  191 (323)
T ss_pred             CCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh
Confidence            45677788777777666555544444443 23444   445555666678889999999999999999999888887777


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHH-------HHc--CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-------ERN--NLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-------~~~--~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +        ++|+||.|..+.+ ....+.....       ...  ..+++.+||.+++|++++++.+.+
T Consensus       192 D--------i~vINKaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~  251 (323)
T COG1703         192 D--------IIVINKADRKGAE-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIED  251 (323)
T ss_pred             h--------eeeEeccChhhHH-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence            6        8999999975421 1111111111       112  346999999999999999998865

>cd01900 YchF YchF subfamily

Probab=99.47  E-value=1.7e-14  Score=110.61  Aligned_cols=82  Identities=17%  Similarity=0.159  Sum_probs=60.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeE---------------EEEEEEeCCCCccccc---
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT---------------IKAQIWDTAGQERYRA---   75 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~~---   75 (223)
                      |+++|.||||||||+|+|++........+..+.+.....+.+.+.+               ..+.++|+||.....+   
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5899999999999999999998866666666666666666665432               2589999999543221   


Q ss_pred             -c---chhhhcCCcEEEEEEeCCC
Q psy15625         76 -I---TSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        76 -~---~~~~~~~~~~~i~v~d~~~   95 (223)
                       +   ....++.+|++++|+|.++
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f~  104 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCFE  104 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCcC
Confidence             1   1223678999999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK00007 elongation factor G; Reviewed

Probab=99.47  E-value=7e-13  Score=114.80  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=57.1

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccc--c---cc-----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN--L---ES-----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      .+...+|+++|.+|+|||||+++|+...-.  .   ..           ....+++.......+.+....+.++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            345679999999999999999999741110  0   00           0122334434334444456689999999987


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCc
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      ++.......++.+|++++|+|....
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g  111 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGG  111 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCC
Confidence            6655445556667777777775544

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.47  E-value=8.5e-13  Score=94.08  Aligned_cols=179  Identities=14%  Similarity=0.070  Sum_probs=105.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEE--EcC-eEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ--VDQ-KTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++|.|.|++|||||+|+.+++...........++.+..+..-.  +.. ...++.-..|+.             +||  
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~-------------~CH--   77 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGK-------------GCH--   77 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCC-------------ccC--
Confidence            48999999999999999999988765443323333333221100  000 112222233321             111  


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCc-cccccccc-cc-eeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS-LLRRYYRG-AV-GALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                              .+.. ....-++++....+. .+++.+++.+ +...+... .+ ..++++|+..+.....  +....+.   
T Consensus        78 --------~da~-m~~~ai~~l~~~~~~-~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i~---  142 (202)
T COG0378          78 --------LDAS-MNLEAIEELVLDFPD-LDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGIF---  142 (202)
T ss_pred             --------CcHH-HHHHHHHHHhhcCCc-CCEEEEecCcceecccCcchhhceEEEEEECCCCCCCcc--cCCCcee---
Confidence                    1111 112223333333332 4555544444 66665543 33 7889999998854433  2111111   


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         ..-++|+||.|+.+.-..+.+...+-+++.  +.+++++|+++|+|++++++++...
T Consensus       143 ---~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         143 ---KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             ---EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence               134899999999987777667766666654  5789999999999999999998653

>KOG0090|consensus

Probab=99.47  E-value=2.3e-13  Score=97.76  Aligned_cols=79  Identities=22%  Similarity=0.328  Sum_probs=57.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc---CCcEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR---GAVGAL   88 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~~~~i   88 (223)
                      -.|+++|+.++|||+|+-.|..+.+.....   .+......+.++..  ...++|.||+.+.+.....++.   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt---Siepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT---SIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee---eeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            469999999999999999999886543331   12333334434333  3799999999888777776666   678888


Q ss_pred             EEEeCCC
Q psy15625         89 LVYDIAK   95 (223)
Q Consensus        89 ~v~d~~~   95 (223)
                      +|+|...
T Consensus       114 FVVDSa~  120 (238)
T KOG0090|consen  114 FVVDSAT  120 (238)
T ss_pred             EEEeccc
Confidence            8888764

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=5.5e-13  Score=104.93  Aligned_cols=90  Identities=21%  Similarity=0.207  Sum_probs=68.3

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcc--cc---------------c------------ccccceeeeEEEEEEEcCe
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF--NL---------------E------------SKSTIGVEFATRSIQVDQK   58 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~---------------~------------~~~~~~~~~~~~~~~~~~~   58 (223)
                      .++.++++++|+..+|||||+.+|+...-  +.               .            ..+.-|.+++.....+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            46789999999999999999999875210  00               0            0112355666666667777


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      .+.+.++|+||+.+|-.-...-...+|+.++|+|+.+.+
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e  122 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE  122 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence            778999999998888777777788899999999998764

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.46  E-value=1.7e-12  Score=100.28  Aligned_cols=66  Identities=21%  Similarity=0.251  Sum_probs=43.9

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      ++....++|+++|.+|+||||++|++++........ ...+.......  ....+..+.++||||..+.
T Consensus        33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~--~~~~G~~l~VIDTPGL~d~   99 (313)
T TIGR00991        33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS--RTRAGFTLNIIDTPGLIEG   99 (313)
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE--EEECCeEEEEEECCCCCch
Confidence            445668999999999999999999999887533221 11122221222  2224568899999996543

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.45  E-value=2.8e-13  Score=110.92  Aligned_cols=208  Identities=21%  Similarity=0.281  Sum_probs=126.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc--CeEEEEEEEeCCCCccccccchhhhcCC--
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD--QKTIKAQIWDTAGQERYRAITSAYYRGA--   84 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~--   84 (223)
                      ...-.|+|+|..++|||||+.+|.+.+   ...++.+.+|....+.-+  .....+.+|-..|...+..+....+...  
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            345689999999999999999997654   233444555554443322  2334689999988777777777765543  


Q ss_pred             --cEEEEEEeCCCccc-HHHHHHHHHHHHHhcCCceeEEEeCC----Cccc---cccccccceeEEE-----eecccccc
Q psy15625         85 --VGALLVYDIAKHLT-YENVERWLRELRDHADQNIVIMLVGP----PSLL---RRYYRGAVGALLV-----YDIAKHLT  149 (223)
Q Consensus        85 --~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~-----~d~~~~~~  149 (223)
                        -.+++|.|++.+.. ++.+..|+..++++.... .+..-..    ..++   ..|....+...--     ........
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L-~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~  178 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKL-KSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD  178 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence              36788999999987 778899999999887642 1100000    0111   1111111111000     00000000


Q ss_pred             hhhhHHHH--HHhhhccCCCceEEEeecccchhh----ccC-------CChHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q psy15625        150 YENVERWL--RELRDHADQNIVIMLVGNKSDLRH----LRA-------VPADEAKTFAERNNLSFIETSALDSTNVETAF  216 (223)
Q Consensus       150 ~~~~~~~~--~~~~~~~~~~~p~ivv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  216 (223)
                      .+.....+  ..+.  ...++|++||++|+|...    ...       +....++.++.++|+..+++|++...+++.++
T Consensus       179 ~~~~~lpl~~g~l~--~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~  256 (472)
T PF05783_consen  179 DESVLLPLGEGVLT--ENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLY  256 (472)
T ss_pred             cccccCCCCCcccc--cccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHH
Confidence            00000000  0111  123789999999999742    111       22334788888999999999999999999999


Q ss_pred             HHHHhh
Q psy15625        217 QNILTA  222 (223)
Q Consensus       217 ~~i~~~  222 (223)
                      .+|.+.
T Consensus       257 ~yi~h~  262 (472)
T PF05783_consen  257 KYILHR  262 (472)
T ss_pred             HHHHHH
Confidence            887653

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK12740 elongation factor G; Reviewed

Probab=99.43  E-value=2.5e-12  Score=111.41  Aligned_cols=86  Identities=19%  Similarity=0.206  Sum_probs=58.7

Q ss_pred             EcCCCCcHHHHHHHHhhCccc--------ccc--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625         17 IGDSGVGKSNLLSRFTRNEFN--------LES--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY   80 (223)
Q Consensus        17 ~G~~~~GKStli~~l~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   80 (223)
                      +|++|+|||||+++|....-.        ...        ....+.+.......+.+....+.+|||||+.++......+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999543211        000        0011223333333344456789999999998877777778


Q ss_pred             hcCCcEEEEEEeCCCcccHHHH
Q psy15625         81 YRGAVGALLVYDIAKHLTYENV  102 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~  102 (223)
                      ++.+|++++++|.+........
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~  102 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE  102 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH
Confidence            8999999999999886655444

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.42  E-value=3.3e-12  Score=97.16  Aligned_cols=67  Identities=22%  Similarity=0.335  Sum_probs=44.9

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      .+.+..++|+|+|.+|||||||+|+|++........... .+...........+..+.+|||||..+.
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~-~T~~~~~~~~~~~g~~i~vIDTPGl~~~   92 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQS-ETLRVREVSGTVDGFKLNIIDTPGLLES   92 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC-ceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence            456678999999999999999999999987644432211 1111222222233457899999996543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.41  E-value=5.7e-12  Score=111.55  Aligned_cols=74  Identities=20%  Similarity=0.212  Sum_probs=51.4

Q ss_pred             cHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe----------------EEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625         23 GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK----------------TIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus        23 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      +||||+.++.+..+...-...++-.+....+..+..                .-.+.+|||||+..+..+.......+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            399999999998775543333333333333333210                0127999999999998888778888999


Q ss_pred             EEEEEeCCCc
Q psy15625         87 ALLVYDIAKH   96 (223)
Q Consensus        87 ~i~v~d~~~~   96 (223)
                      +++|+|.++.
T Consensus       553 vlLVVDa~~G  562 (1049)
T PRK14845        553 AVLVVDINEG  562 (1049)
T ss_pred             EEEEEECccc
Confidence            9999998763

>TIGR00101 ureG urease accessory protein UreG

Probab=99.41  E-value=1.9e-11  Score=90.09  Aligned_cols=80  Identities=20%  Similarity=0.104  Sum_probs=54.2

Q ss_pred             cceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHH--cCCeEEEeecCCCCCH
Q psy15625        135 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER--NNLSFIETSALDSTNV  212 (223)
Q Consensus       135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i  212 (223)
                      ++.++.++|+....+...  .....+      ...-++++||+|+.+......+...+..+.  .+.+++++||++|+|+
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi  184 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGL  184 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence            688999999987765322  111111      122389999999975322233444444443  4678999999999999


Q ss_pred             HHHHHHHHhh
Q psy15625        213 ETAFQNILTA  222 (223)
Q Consensus       213 ~~~~~~i~~~  222 (223)
                      +++|+++.+.
T Consensus       185 ~el~~~i~~~  194 (199)
T TIGR00101       185 DTVIDWIEHY  194 (199)
T ss_pred             HHHHHHHHhh
Confidence            9999999764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.40  E-value=1.7e-11  Score=96.48  Aligned_cols=188  Identities=14%  Similarity=0.102  Sum_probs=99.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc--chhhhc--CC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI--TSAYYR--GA   84 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--~~~~~~--~~   84 (223)
                      ...+.|+|+|+||+|||||++++........      ..            +.+.-.|.........+  +...+.  ..
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g------~~------------v~vi~~Dp~s~~~~gallgd~~r~~~~~~  115 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQG------HK------------VAVLAVDPSSTRTGGSILGDKTRMERLSR  115 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCC------Ce------------EEEEEeCCCccccchhhhchHhHHHhhcC
Confidence            3568999999999999999999865432111      11            11122222111100011  000011  22


Q ss_pred             cEEEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCcccc---ccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         85 VGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR---RYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      +..+++...........+ ....+.+......+.+++++++.+...   .....+|.++++.++..+......+...  +
T Consensus       116 ~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi--~  193 (332)
T PRK09435        116 HPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGI--M  193 (332)
T ss_pred             CCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhh--h
Confidence            222344444433333322 222222223333455666666655533   3456899999997766555554433211  1


Q ss_pred             hhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                            ...-++|+||+|+.+....  ...+++.....       +..+++.+||+++.|++++++.|.+.
T Consensus       194 ------E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~  258 (332)
T PRK09435        194 ------ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDH  258 (332)
T ss_pred             ------hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence                  2233899999998642211  11222222221       22579999999999999999998763

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.39  E-value=3.7e-11  Score=89.46  Aligned_cols=99  Identities=12%  Similarity=0.115  Sum_probs=59.1

Q ss_pred             ceeEEEeCCCc-cc--cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHH
Q psy15625        116 NIVIMLVGPPS-LL--RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT  192 (223)
Q Consensus       116 ~~~~~~~~~~~-~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  192 (223)
                      ..+++++++.+ ..  ..+....+..+.+.|+..+.....  ....   .   ...|.++++||+|+.+.......+...
T Consensus       102 ~~d~IiIEt~G~l~~~~~~~~~~~~~i~Vvd~~~~d~~~~--~~~~---~---~~~a~iiv~NK~Dl~~~~~~~~~~~~~  173 (207)
T TIGR00073       102 DIDLLFIENVGNLVCPADFDLGEHMRVVLLSVTEGDDKPL--KYPG---M---FKEADLIVINKADLAEAVGFDVEKMKA  173 (207)
T ss_pred             CCCEEEEecCCCcCCCcccccccCeEEEEEecCcccchhh--hhHh---H---HhhCCEEEEEHHHccccchhhHHHHHH
Confidence            34566664444 11  112223444566777765543211  1111   1   246789999999996532222334444


Q ss_pred             HHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        193 FAERN--NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       193 ~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...+.  ..+++++||+++.|++++|+++.+.
T Consensus       174 ~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       174 DAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            44443  3789999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.39  E-value=2.1e-12  Score=112.24  Aligned_cols=88  Identities=15%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCc---------------cccc-ccc--cceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNE---------------FNLE-SKS--TIGVEFATRSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~   70 (223)
                      +...+|+++|..++|||||+++|+...               +... ...  ++........+.+++..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            346799999999999999999997521               1000 001  2211222223345677889999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         71 ERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      .++.......++.+|++++|+|....
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g  122 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEG  122 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCC
Confidence            88877777788899999999987664

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1486|consensus

Probab=99.38  E-value=1.3e-10  Score=85.99  Aligned_cols=193  Identities=23%  Similarity=0.204  Sum_probs=119.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-------cchhhhcCC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-------ITSAYYRGA   84 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~   84 (223)
                      -+|+++|-|.+|||||+..++.-........+.+.+.-+..+.+++.  .+++.|.||..+..+       ......+.+
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArta  140 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVARTA  140 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeecc
Confidence            68999999999999999999876655444455455555555555544  679999999654433       333457889


Q ss_pred             cEEEEEEeCCCcccHH-HHHHHHHHHHH---hcCCceeEEEeCCCcc---------------ccc---cccccce-eEEE
Q psy15625         85 VGALLVYDIAKHLTYE-NVERWLRELRD---HADQNIVIMLVGPPSL---------------LRR---YYRGAVG-ALLV  141 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~-~~~~  141 (223)
                      |.+++|.|.+..+... .++..++..--   ...+++-+-.-...+.               ...   .++-..+ +++-
T Consensus       141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R  220 (364)
T KOG1486|consen  141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR  220 (364)
T ss_pred             cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence            9999999999876544 44544444322   1122222222111111               000   1111111 2222


Q ss_pred             eecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        142 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       142 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      -|    .+.+   .++..+.. ....+|++.|-||+|.     ++.+++.+++++++-  +-+|+....|++.+++.|.+
T Consensus       221 eD----~t~D---dfIDvi~g-nr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe  285 (364)
T KOG1486|consen  221 ED----CTVD---DFIDVIEG-NRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWE  285 (364)
T ss_pred             cC----CChH---HHHHHHhc-cceEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHH
Confidence            22    2222   23333322 2346899999999995     688999999988886  55677778899988887764

>KOG1144|consensus

Probab=99.38  E-value=2.6e-12  Score=107.26  Aligned_cols=86  Identities=20%  Similarity=0.221  Sum_probs=63.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc----------------CeEEEEEEEeCCCCcccc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD----------------QKTIKAQIWDTAGQERYR   74 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~   74 (223)
                      +.-|||+|.-.+|||-|+..+.+..+.......++-.+....+...                ..---+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            4568999999999999999999877655544433322222222221                111247899999999999


Q ss_pred             ccchhhhcCCcEEEEEEeCCCc
Q psy15625         75 AITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      +++......||.+|+|+|+...
T Consensus       555 nlRsrgsslC~~aIlvvdImhG  576 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHG  576 (1064)
T ss_pred             hhhhccccccceEEEEeehhcc
Confidence            9999999999999999999764

>KOG1707|consensus

Probab=99.37  E-value=1.9e-11  Score=99.86  Aligned_cols=161  Identities=19%  Similarity=0.233  Sum_probs=115.9

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ...+-+.+.++|+.++|||.+++.+.+..+...+..+....+....+...+....+.+.|.+-. ....+...- ..||.
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            3445689999999999999999999998887755555555555666666676667788887754 222222222 78999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      ++++||.+++.+++.+...++.                                                    .... .
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~----------------------------------------------------~~~~-~  525 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNK----------------------------------------------------YFDL-Y  525 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHH----------------------------------------------------hhhc-c
Confidence            9999999999998887643221                                                    1111 4


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhhC
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      +.|+++|++|+|+.+..+...-+..+++.+++++ .+.+|.+.... .++|..|..+|
T Consensus       526 ~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A  582 (625)
T KOG1707|consen  526 KIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMA  582 (625)
T ss_pred             CCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhh
Confidence            7899999999999874433333448899999985 67778775434 88999888765

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.36  E-value=3.8e-13  Score=101.63  Aligned_cols=57  Identities=23%  Similarity=0.136  Sum_probs=32.7

Q ss_pred             CCceEEEeecccchhhcc------C------C-------ChHHHHHHHH---HcC-C-eEEEeecCCCCCHHHHHHHHHh
Q psy15625        166 QNIVIMLVGNKSDLRHLR------A------V-------PADEAKTFAE---RNN-L-SFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~------~------~-------~~~~~~~~~~---~~~-~-~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      .+.|.+.|+||+|+.+..      .      .       .....++++.   ..+ . +++++|+.+++++++++..+-+
T Consensus       155 ~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~  234 (238)
T PF03029_consen  155 LELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDK  234 (238)
T ss_dssp             HTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHH
T ss_pred             CCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHH
Confidence            479999999999996511      0      0       0011111111   112 3 6999999999999999998876


Q ss_pred             h
Q psy15625        222 A  222 (223)
Q Consensus       222 ~  222 (223)
                      +
T Consensus       235 a  235 (238)
T PF03029_consen  235 A  235 (238)
T ss_dssp             H
T ss_pred             H
Confidence            4

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK13768 GTPase; Provisional

Probab=99.36  E-value=7e-12  Score=95.93  Aligned_cols=86  Identities=16%  Similarity=0.120  Sum_probs=53.0

Q ss_pred             cceeEEEeecccccchhhhHHHH-HHhhhccCCCceEEEeecccchhhccCCChHHHHH---------------------
Q psy15625        135 AVGALLVYDIAKHLTYENVERWL-RELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT---------------------  192 (223)
Q Consensus       135 ~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------------------  192 (223)
                      .+++++++|++...+..+..... ..+......++|+++|+||+|+.+..+.  ++...                     
T Consensus       129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~  206 (253)
T PRK13768        129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQGL  206 (253)
T ss_pred             CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchHHH
Confidence            66778888877665554432211 1111111237899999999998653221  11111                     


Q ss_pred             -------HHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        193 -------FAERNN--LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       193 -------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                             ...+.+  .+++++|++++.|+++++++|.+.
T Consensus       207 ~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~  245 (253)
T PRK13768        207 LSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV  245 (253)
T ss_pred             HHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence                   112223  478999999999999999998764

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.33  E-value=2.8e-11  Score=90.35  Aligned_cols=81  Identities=23%  Similarity=0.287  Sum_probs=46.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccccccc--ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch-----------
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS-----------   78 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-----------   78 (223)
                      ++|+|+|.+|+||||++|.+++........  ...+..........++  ..+.++||||..+......           
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999987754432  2222333333333444  5679999999543221110           


Q ss_pred             hhhcCCcEEEEEEeCC
Q psy15625         79 AYYRGAVGALLVYDIA   94 (223)
Q Consensus        79 ~~~~~~~~~i~v~d~~   94 (223)
                      ....+.|++++|+...
T Consensus        79 ~~~~g~ha~llVi~~~   94 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG   94 (212)
T ss_dssp             HTTT-ESEEEEEEETT
T ss_pred             hccCCCeEEEEEEecC
Confidence            1134566677776665

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.32  E-value=1e-10  Score=89.87  Aligned_cols=55  Identities=16%  Similarity=0.155  Sum_probs=39.9

Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHH--cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAER--NNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ..+-++|+||+|+.+......+...+..++  .+.+++++|+++++|++++.+||.+
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            456699999999965222223334444433  3578999999999999999999875

>KOG0458|consensus

Probab=99.31  E-value=2.6e-11  Score=99.08  Aligned_cols=153  Identities=20%  Similarity=0.233  Sum_probs=103.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc--------------------cc---------ccccccceeeeEEEEEEEcCeEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE--------------------FN---------LESKSTIGVEFATRSIQVDQKTI   60 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~--------------------~~---------~~~~~~~~~~~~~~~~~~~~~~~   60 (223)
                      ..+..+++|.-.+|||||+.+++...                    ..         ....+..|.+.+.....++....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            46899999999999999999987511                    00         01112335666677777777788


Q ss_pred             EEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625         61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL---TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG  137 (223)
Q Consensus        61 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
                      .+.+.|.||+..|-+-...-...+|..++|+|++..+   .|+.-.+..+.                             
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-----------------------------  306 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-----------------------------  306 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-----------------------------
Confidence            9999999998888887777888899999999997643   12211111111                             


Q ss_pred             eEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHH-------HH-HHcC-----CeEEEe
Q psy15625        138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT-------FA-ERNN-----LSFIET  204 (223)
Q Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~-~~~~-----~~~~~~  204 (223)
                                      ...++.+.     -.-++|++||+|+.+   ++.+.++.       |. +..|     +.|++|
T Consensus       307 ----------------a~llr~Lg-----i~qlivaiNKmD~V~---Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPi  362 (603)
T KOG0458|consen  307 ----------------ALLLRSLG-----ISQLIVAINKMDLVS---WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPI  362 (603)
T ss_pred             ----------------HHHHHHcC-----cceEEEEeecccccC---ccHHHHHHHHHHHHHHHHHhcCcccCCcceEec
Confidence                            12233333     345789999999976   44443333       33 2233     469999


Q ss_pred             ecCCCCCHHHH
Q psy15625        205 SALDSTNVETA  215 (223)
Q Consensus       205 Sa~~~~~i~~~  215 (223)
                      |+.+|+|+-..
T Consensus       363 SGl~GeNL~k~  373 (603)
T KOG0458|consen  363 SGLSGENLIKI  373 (603)
T ss_pred             ccccCCccccc
Confidence            99999998643

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.29  E-value=7.6e-11  Score=94.13  Aligned_cols=157  Identities=18%  Similarity=0.254  Sum_probs=105.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccc--cc----------c--cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFN--LE----------S--KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA   75 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~   75 (223)
                      +.-+|+++-.-.=|||||+..|+.+.-.  +.          .  ...-|+++-.+.-.+.+....++++|||||.+|+.
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            4568999999999999999999875321  10          0  12235566666666778888999999999999998


Q ss_pred             cchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625         76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER  155 (223)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (223)
                      -.+..+...|++++++|.....                                                   -++.  +
T Consensus        84 EVERvl~MVDgvlLlVDA~EGp---------------------------------------------------MPQT--r  110 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGP---------------------------------------------------MPQT--R  110 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCC---------------------------------------------------CCch--h
Confidence            8888888888888887776522                                                   1111  0


Q ss_pred             HHHHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHH-------HcCCeEEEeecCCCC----------CHHHHHH
Q psy15625        156 WLRELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAE-------RNNLSFIETSALDST----------NVETAFQ  217 (223)
Q Consensus       156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~  217 (223)
                      +  -+......+.+-|+|+||+|.+..+.- -.++...+..       +..+++++.|++.|.          ++..+|+
T Consensus       111 F--VlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe  188 (603)
T COG1217         111 F--VLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFE  188 (603)
T ss_pred             h--hHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHH
Confidence            0  011111236667889999998763321 1233333332       456789999999875          6778888


Q ss_pred             HHHh
Q psy15625        218 NILT  221 (223)
Q Consensus       218 ~i~~  221 (223)
                      .|++
T Consensus       189 ~I~~  192 (603)
T COG1217         189 TILD  192 (603)
T ss_pred             HHHH
Confidence            8875

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.29  E-value=2e-11  Score=83.18  Aligned_cols=114  Identities=32%  Similarity=0.398  Sum_probs=75.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +..+...+.++.+.++++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999998777653332 2222                           222334456778888888


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      |+....+++..+  |...+                                                   ........|.
T Consensus        54 ~~~~~~~s~~~~--~~~~i---------------------------------------------------~~~~k~dl~~   80 (124)
T smart00010       54 WRVDDRDSADNK--NVPEV---------------------------------------------------LVGNKSDLPI   80 (124)
T ss_pred             EEccCHHHHHHH--hHHHH---------------------------------------------------HhcCCCCCcE
Confidence            888887776544  33222                                                   2222335788


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE  213 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  213 (223)
                      ++++||.|+.....+..++.        .+++++|++++.|+.
T Consensus        81 ~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       81 LVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence            99999999855333333222        245677888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.28  E-value=1.8e-11  Score=93.14  Aligned_cols=96  Identities=17%  Similarity=0.204  Sum_probs=72.9

Q ss_pred             ccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccc
Q psy15625         71 ERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT  149 (223)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  149 (223)
                      +++..+.+.+++++|.+++|+|+.++. ++..+.+|+..+                                        
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~----------------------------------------   63 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVA----------------------------------------   63 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHH----------------------------------------
Confidence            456677778899999999999999877 788888554422                                        


Q ss_pred             hhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        150 YENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                                 ..   .++|+++|+||+|+.+.+....+..+.+ ...+.+++++||+++.|++++|+.+..
T Consensus        64 -----------~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        64 -----------EA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             -----------HH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence                       22   3689999999999965443333334433 357889999999999999999998753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0410|consensus

Probab=99.28  E-value=1.1e-11  Score=94.60  Aligned_cols=157  Identities=20%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ...-|.++|..|+|||||+++|+.....+...-+.+.++.......+... .+.+.||.|...--+...           
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~L-----------  244 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQL-----------  244 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHH-----------
Confidence            34579999999999999999999888777777777788777766665544 778999999432221111           


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                               ....+..++++                       ..+|.++-+.|.+++...+.....+..+....-...|
T Consensus       245 ---------vaAF~ATLeeV-----------------------aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~p  292 (410)
T KOG0410|consen  245 ---------VAAFQATLEEV-----------------------AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEP  292 (410)
T ss_pred             ---------HHHHHHHHHHH-----------------------hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHH
Confidence                     11111122222                       2245555555555554444433444444333222222


Q ss_pred             ----EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625        170 ----IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL  220 (223)
Q Consensus       170 ----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  220 (223)
                          ++=|=||+|+.+...-        .+.++  .+.+||++|+|++++.+.+-
T Consensus       293 kl~~mieVdnkiD~e~~~~e--------~E~n~--~v~isaltgdgl~el~~a~~  337 (410)
T KOG0410|consen  293 KLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGISALTGDGLEELLKAEE  337 (410)
T ss_pred             HHhHHHhhccccccccccCc--------cccCC--ccccccccCccHHHHHHHHH
Confidence                3445577776542111        11222  58899999999999988764

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.28  E-value=7.2e-11  Score=93.71  Aligned_cols=84  Identities=13%  Similarity=0.218  Sum_probs=42.1

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccccccccc---ceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh----
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST---IGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY----   80 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~----   80 (223)
                      .+..++|+|+|.+|+|||||+|+|.+-.........   .+++..+..+..... -++.+||.||.....-....|    
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            456799999999999999999999874332222111   122222222222222 258999999964332222222    


Q ss_pred             -hcCCcEEEEEEe
Q psy15625         81 -YRGAVGALLVYD   92 (223)
Q Consensus        81 -~~~~~~~i~v~d   92 (223)
                       +..-|.++++.+
T Consensus       111 ~~~~yD~fiii~s  123 (376)
T PF05049_consen  111 KFYRYDFFIIISS  123 (376)
T ss_dssp             TGGG-SEEEEEES
T ss_pred             cccccCEEEEEeC
Confidence             445565555443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.27  E-value=8e-11  Score=102.74  Aligned_cols=89  Identities=17%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccc----------------ccccceeeeEE--EEEEEcCeEEEEEEEeCCCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFAT--RSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~   70 (223)
                      +...+|+++|+.++|||||+.+|+...-...                ....+++....  ..+..++....+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            3456899999999999999999975321100                00111111111  12223445678999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625         71 ERYRAITSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      .++.......++.+|++++|+|.....
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~  124 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGV  124 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCC
Confidence            888777777788888888888876543

>cd01882 BMS1 Bms1

Probab=99.26  E-value=7.7e-11  Score=88.75  Aligned_cols=80  Identities=20%  Similarity=0.239  Sum_probs=46.8

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ..+...|+++|.+|+|||||++.+.+...........+ .+   ++ .......+.++|+||..  ..+ ....+.+|.+
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence            34567899999999999999999987532211111111 11   11 11244577899999843  111 1224556666


Q ss_pred             EEEEeCCC
Q psy15625         88 LLVYDIAK   95 (223)
Q Consensus        88 i~v~d~~~   95 (223)
                      ++++|...
T Consensus       108 llviDa~~  115 (225)
T cd01882         108 LLLIDASF  115 (225)
T ss_pred             EEEEecCc
Confidence            66666544

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.26  E-value=1.4e-11  Score=108.73  Aligned_cols=91  Identities=20%  Similarity=0.196  Sum_probs=61.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccc----------------ccccccceeeeEEEEEEE--------------cC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN----------------LESKSTIGVEFATRSIQV--------------DQ   57 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~   57 (223)
                      .+...+|+|+|+.++|||||+++|+...-.                ......+++......+..              ..
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            445679999999999999999999854311                000011111111111212              12


Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT   98 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~   98 (223)
                      ....++++||||+.+|.......++.+|++++|+|....-.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~  136 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC  136 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc
Confidence            35678999999999988877888899999999999876544

>PTZ00416 elongation factor 2; Provisional

Probab=99.26  E-value=3.3e-11  Score=106.26  Aligned_cols=90  Identities=19%  Similarity=0.248  Sum_probs=58.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccc----------------ccccceeeeEEEEEEEc--------CeEEEEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVD--------QKTIKAQI   64 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~~   64 (223)
                      +...+|+++|+.++|||||+++|+...-...                ....+++......+...        ++...+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            4457999999999999999999986321100                00111111111122222        22567899


Q ss_pred             EeCCCCccccccchhhhcCCcEEEEEEeCCCccc
Q psy15625         65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT   98 (223)
Q Consensus        65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~   98 (223)
                      +||||+.++.......++.+|++++|+|....-.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~  130 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC  130 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC
Confidence            9999998877767777888888888888766443

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.25  E-value=1.8e-10  Score=90.46  Aligned_cols=99  Identities=15%  Similarity=0.107  Sum_probs=58.6

Q ss_pred             CceeEEEeCCCccccc---cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCCh--H-
Q psy15625        115 QNIVIMLVGPPSLLRR---YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA--D-  188 (223)
Q Consensus       115 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~-  188 (223)
                      ...+++++++++....   ....+|.++++.....+   ..+......+     .++|.++++||+|+.+......  . 
T Consensus       125 ~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~~  196 (300)
T TIGR00750       125 AGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARLM  196 (300)
T ss_pred             CCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHHH
Confidence            4667777776655433   34566777777544333   3322222222     2578899999999865221100  0 


Q ss_pred             ---HHHHHHHH---cCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        189 ---EAKTFAER---NNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       189 ---~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                         ....+...   ++.+++++||+++.|++++++++.+
T Consensus       197 ~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~  235 (300)
T TIGR00750       197 LALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE  235 (300)
T ss_pred             HHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence               00111111   2235899999999999999999875

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.24  E-value=1.8e-09  Score=83.66  Aligned_cols=161  Identities=17%  Similarity=0.246  Sum_probs=81.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccc----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY   80 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   80 (223)
                      .++|+|+|.+|+|||||+|.|++.......          ..+..+......+.-++..+.+.++||||..+.-+.    
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n----   79 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN----   79 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH----
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc----
Confidence            589999999999999999999987654442          122223333334444677889999999995432211    


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHH----HHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc-cchhhhHH
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLR----ELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH-LTYENVER  155 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~  155 (223)
                                     ...+..+..+++    ........         .......-.+.++.+|+++++.+ ....++. 
T Consensus        80 ---------------~~~~~~I~~yI~~qf~~~l~eE~~---------~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-  134 (281)
T PF00735_consen   80 ---------------SDCWEPIVDYIESQFDSYLEEESK---------INRPRIEDTRVHACLYFIPPTGHGLKPLDIE-  134 (281)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHTS---------SS-TTS----EEEEEEEE-TTSSSS-HHHHH-
T ss_pred             ---------------hhhhHHHHHHHHHHHHHHHHHhhc---------ccccCcCCCCcceEEEEEcCCCccchHHHHH-
Confidence                           112222222221    11111110         01112234689999999998754 4555543 


Q ss_pred             HHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHHHcCCeEEEe
Q psy15625        156 WLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAERNNLSFIET  204 (223)
Q Consensus       156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~  204 (223)
                      .+..+..    ..++|-|+.|+|.-...+  .....+..-...++++++..
T Consensus       135 ~mk~Ls~----~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f  181 (281)
T PF00735_consen  135 FMKRLSK----RVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDF  181 (281)
T ss_dssp             HHHHHTT----TSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred             HHHHhcc----cccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecc
Confidence            3334433    578899999999743111  11223344444567665553

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.23  E-value=1.4e-10  Score=89.62  Aligned_cols=152  Identities=25%  Similarity=0.260  Sum_probs=100.8

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccccc-------------------------------ccccceeeeEEEEEEEc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-------------------------------SKSTIGVEFATRSIQVD   56 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   56 (223)
                      +...+|.+-+|.-.=||||||-+|+.......                               .....|++++...-.+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            45579999999999999999999986321100                               11234566666655565


Q ss_pred             CeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccc
Q psy15625         57 QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAV  136 (223)
Q Consensus        57 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (223)
                      -...+|.+-||||++.|....-.-...||+.++++|.-..    -    +++-++|                        
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G----v----l~QTrRH------------------------  130 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG----V----LEQTRRH------------------------  130 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh----h----HHHhHHH------------------------
Confidence            5666899999999998887766667778888888886221    1    1111111                        


Q ss_pred             eeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC----ChHHHHHHHHHcCC---eEEEeecCCC
Q psy15625        137 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV----PADEAKTFAERNNL---SFIETSALDS  209 (223)
Q Consensus       137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~---~~~~~Sa~~~  209 (223)
                                        .++..+-.    =.-+++++||+||.+..+-    ...+...|+.+.++   .++++||+.|
T Consensus       131 ------------------s~I~sLLG----IrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~G  188 (431)
T COG2895         131 ------------------SFIASLLG----IRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLG  188 (431)
T ss_pred             ------------------HHHHHHhC----CcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccC
Confidence                              11111111    1357888999999874332    23456677777776   4999999999


Q ss_pred             CCHH
Q psy15625        210 TNVE  213 (223)
Q Consensus       210 ~~i~  213 (223)
                      .|+.
T Consensus       189 DNV~  192 (431)
T COG2895         189 DNVV  192 (431)
T ss_pred             Cccc
Confidence            9885

>KOG1487|consensus

Probab=99.20  E-value=2.1e-10  Score=85.20  Aligned_cols=192  Identities=21%  Similarity=0.199  Sum_probs=120.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-------cccchhhhcCC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-------RAITSAYYRGA   84 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~   84 (223)
                      -+|.++|-|.+||||++..|.+...+.......+.+.-+....+  ..-.+++.|.||..+.       +.+.....+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            48999999999999999999987655444343333333333333  3447899999995432       23444557889


Q ss_pred             cEEEEEEeCCCcccHHHH-HHHHHHHHH---hcCCc--------eeEEEeCC-------CccccccccccceeEEEeecc
Q psy15625         85 VGALLVYDIAKHLTYENV-ERWLRELRD---HADQN--------IVIMLVGP-------PSLLRRYYRGAVGALLVYDIA  145 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~-~~~~~~~~~---~~~~~--------~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~  145 (223)
                      +.+++|.|+..+-+-..+ +..++.+--   ..+++        ..+-+.++       .+...++.-++..+.+-+|++
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT  217 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT  217 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence            999999999998775544 333332211   11111        12222221       122445666777888888877


Q ss_pred             cccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHh
Q psy15625        146 KHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ....       +..++.. ...+|.+++.||+|...     .++..-.   ..+ ..+++||.+++|++++++.+.+
T Consensus       218 ~DdL-------IdvVegn-r~yVp~iyvLNkIdsIS-----iEELdii---~~iphavpISA~~~wn~d~lL~~mwe  278 (358)
T KOG1487|consen  218 ADDL-------IDVVEGN-RIYVPCIYVLNKIDSIS-----IEELDII---YTIPHAVPISAHTGWNFDKLLEKMWE  278 (358)
T ss_pred             hhhh-------hhhhccC-ceeeeeeeeecccceee-----eecccee---eeccceeecccccccchHHHHHHHhh
Confidence            6633       3333332 23689999999999643     3333222   222 3689999999999999988754

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.18  E-value=3.5e-10  Score=90.01  Aligned_cols=185  Identities=13%  Similarity=0.155  Sum_probs=98.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC----cccc----------cccccce---eeeEEEE-----EE---EcCeEEEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN----EFNL----------ESKSTIG---VEFATRS-----IQ---VDQKTIKAQI   64 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~----~~~~----------~~~~~~~---~~~~~~~-----~~---~~~~~~~~~~   64 (223)
                      ..+-|+|+|+.++|||||+|++.+.    ....          -.....|   +++.++.     +.   .++...++.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3578999999999999999999998    3220          1112333   3333333     11   2345568999


Q ss_pred             EeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEe-e
Q psy15625         65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVY-D  143 (223)
Q Consensus        65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d  143 (223)
                      +||+|...-+.+-........ .+-.-+...+-.|.....                    =+.-.....+++..+++. |
T Consensus        96 IDcvG~~v~GalG~~r~~k~R-mV~TPW~d~~IPF~~AAe--------------------iGT~kVI~dhstIgivVtTD  154 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPR-MVSTPWYDYEIPFEEAAE--------------------IGTRKVIQEHSTIGVVVTTD  154 (492)
T ss_pred             EECCCcccCCCccceeccccc-cccCCcccccCchhhhhh--------------------hhHHHHHHhcCcEEEEEEcC
Confidence            999995432221111100000 000000001111222211                    011111223677777777 7


Q ss_pred             cccc-----cchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeec--CCCCCHHHHH
Q psy15625        144 IAKH-----LTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSA--LDSTNVETAF  216 (223)
Q Consensus       144 ~~~~-----~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~~~  216 (223)
                      .+-.     .....-..++..+..   .++|+++++||+|....  -..+....+..+++++++.+|+  .+...+..++
T Consensus       155 gsi~dI~Re~y~~aEe~~i~eLk~---~~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il  229 (492)
T TIGR02836       155 GTITDIPREDYVEAEERVIEELKE---LNKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESMRESDILSVL  229 (492)
T ss_pred             CCccccccccchHHHHHHHHHHHh---cCCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHH
Confidence            6522     112222345555544   58999999999994321  1344455666677888777665  4456777777


Q ss_pred             HHHH
Q psy15625        217 QNIL  220 (223)
Q Consensus       217 ~~i~  220 (223)
                      +.+.
T Consensus       230 ~~vL  233 (492)
T TIGR02836       230 EEVL  233 (492)
T ss_pred             HHHH
Confidence            7654

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd00066 G-alpha G protein alpha subunit

Probab=99.18  E-value=1.2e-09  Score=86.27  Aligned_cols=39  Identities=18%  Similarity=0.324  Sum_probs=35.7

Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      ..+.+.+||++|+...+..|..++.+++++++|+|+++.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~  197 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEY  197 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhc
Confidence            456789999999999999999999999999999999975

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1491|consensus

Probab=99.10  E-value=7.3e-11  Score=90.75  Aligned_cols=87  Identities=15%  Similarity=0.151  Sum_probs=68.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC---------------eEEEEEEEeCCCCcc--
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ---------------KTIKAQIWDTAGQER--   72 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~G~~~--   72 (223)
                      ..++++++|.||+|||||+|+|++....+...|..++++....+.+..               ....++++|++|...  
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            457999999999999999999999999988889888888777666532               234689999998432  


Q ss_pred             --c---cccchhhhcCCcEEEEEEeCCCc
Q psy15625         73 --Y---RAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        73 --~---~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                        .   ++-....++.+|+++.|+++...
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~d  127 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFED  127 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecCc
Confidence              2   33334458899999999988764

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.6e-09  Score=86.07  Aligned_cols=93  Identities=18%  Similarity=0.229  Sum_probs=65.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC----------------ccccccc----ccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN----------------EFNLESK----STIGVEFATRSIQVDQKTIKAQIWDTAG   69 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~----------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G   69 (223)
                      ..-..+|+-.|.+|||||-.+|+--                ......+    ..-|+...+..+++++....+++.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            3456899999999999999998641                0000010    1235666677778888888999999999


Q ss_pred             CccccccchhhhcCCcEEEEEEeCCCcccHHHH
Q psy15625         70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENV  102 (223)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  102 (223)
                      +.+|..-.-.-+..+|.+++|+|....-.-+.+
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~  123 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL  123 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHHH
Confidence            998876555556777888888887765554444

>smart00053 DYNc Dynamin, GTPase

Probab=99.07  E-value=3.8e-09  Score=79.70  Aligned_cols=45  Identities=20%  Similarity=0.075  Sum_probs=30.7

Q ss_pred             ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhh
Q psy15625        134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH  181 (223)
Q Consensus       134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  181 (223)
                      ..+.++++.|+....+..+.....+.+.   +.+.|+++|+||+|..+
T Consensus       162 ~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK~D~~~  206 (240)
T smart00053      162 EECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITKLDLMD  206 (240)
T ss_pred             ccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEECCCCCC
Confidence            3457888888877666555434443333   34789999999999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>smart00275 G_alpha G protein alpha subunit

Probab=99.07  E-value=5.4e-09  Score=83.37  Aligned_cols=39  Identities=10%  Similarity=0.171  Sum_probs=35.1

Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      ...+.+||++|+...+..|..++.+++++++|+|+++.+
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d  221 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYD  221 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccc
Confidence            346899999999999999999999999999999999743

Subunit of G proteins that contains the guanine nucleotide binding site

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=4.5e-09  Score=90.13  Aligned_cols=96  Identities=15%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccc-----cc-----------cccceeeeEEEEEEEcCe-EEEEEEEeCCCC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----ES-----------KSTIGVEFATRSIQVDQK-TIKAQIWDTAGQ   70 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~   70 (223)
                      .....+|+++|+-.+|||||..+++...-..     ..           ...-++++......+.+. ...++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            4567889999999999999999987521110     00           012244555555555555 489999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625         71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE  103 (223)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  103 (223)
                      .+|..-....++-+|++++|+|....-..+.-.
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEt  119 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTET  119 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHH
Confidence            999998888899999999999887755444333

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.04  E-value=7.6e-09  Score=74.39  Aligned_cols=46  Identities=24%  Similarity=0.232  Sum_probs=33.7

Q ss_pred             cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeeccc
Q psy15625        129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKS  177 (223)
Q Consensus       129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~  177 (223)
                      .++...+|.+++|.++....+..+...+.......   ...+++|.||+
T Consensus       123 ~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  123 EEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             HHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             HHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            35668999999999999988877766666555544   33488888985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.02  E-value=8e-09  Score=86.90  Aligned_cols=62  Identities=21%  Similarity=0.266  Sum_probs=41.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc-cceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      +..++|+|+|.+|+||||++|+|++......... ..++.........+  +..+.++||||..+
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~d  178 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKS  178 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCc
Confidence            4568999999999999999999999865433322 22222222222222  35789999999654

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00092 GTP-binding protein YchF

Probab=99.02  E-value=1.2e-09  Score=86.79  Aligned_cols=84  Identities=17%  Similarity=0.029  Sum_probs=64.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc-cccccccceeeeEEEEEEEcCeE---------------EEEEEEeCCCCccc--
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQKT---------------IKAQIWDTAGQERY--   73 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~--   73 (223)
                      ++++++|.||+|||||+++|++... ...+.|..+.++....+.+.+.+               ..+.+.|+||....  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999987 65555666667777766665532               36899999995432  


Q ss_pred             -----cccchhhhcCCcEEEEEEeCCC
Q psy15625         74 -----RAITSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        74 -----~~~~~~~~~~~~~~i~v~d~~~   95 (223)
                           +......++.+|++++|+++.+
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                 2234456899999999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0461|consensus

Probab=98.98  E-value=1.2e-08  Score=79.03  Aligned_cols=84  Identities=17%  Similarity=0.275  Sum_probs=51.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcc-------cccccccceeeeEEEEEEE-------cCeEEEEEEEeCCCCccccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEF-------NLESKSTIGVEFATRSIQV-------DQKTIKAQIWDTAGQERYRA   75 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~G~~~~~~   75 (223)
                      -.++++++|.-.+|||||.++|..-..       +......++.+..-..+.+       .+....+.++|+||+.   +
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---s   82 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---S   82 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---H
Confidence            358999999999999999999975221       1112233333433333332       2344678999999954   4


Q ss_pred             cchhhhcCC---cEEEEEEeCCCc
Q psy15625         76 ITSAYYRGA---VGALLVYDIAKH   96 (223)
Q Consensus        76 ~~~~~~~~~---~~~i~v~d~~~~   96 (223)
                      +.+..+.++   |..++|+|+...
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG  106 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKG  106 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcc
Confidence            444444443   455667776653

>cd01858 NGP_1 NGP-1

Probab=98.91  E-value=4.7e-09  Score=74.71  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=38.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG   69 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G   69 (223)
                      ...+|+++|.||+|||||+|+|.+....... +..+.+.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            4578999999999999999999987654333 3333443333333322   368999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.91  E-value=3.4e-09  Score=74.04  Aligned_cols=54  Identities=24%  Similarity=0.290  Sum_probs=39.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   70 (223)
                      +++++|.+|+|||||+|++.+....... ...+.+.....+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999999988765333 2333444444454543   5699999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=8.3e-09  Score=82.32  Aligned_cols=150  Identities=20%  Similarity=0.115  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccc---ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFN---LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      -|+-.|.---|||||++++++....   +......+++.....  .+.....+.++|.||+.++-.-......+.|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y--~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYY--RKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEe--ccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            3677888899999999999886432   233344444443333  43333478999999988776666666677888888


Q ss_pred             EEeCCCc---ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         90 VYDIAKH---LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        90 v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      |++..+.   .+.+.+.                                                    .+..+.     
T Consensus        80 vV~~deGl~~qtgEhL~----------------------------------------------------iLdllg-----  102 (447)
T COG3276          80 VVAADEGLMAQTGEHLL----------------------------------------------------ILDLLG-----  102 (447)
T ss_pred             EEeCccCcchhhHHHHH----------------------------------------------------HHHhcC-----
Confidence            8888543   2333322                                                    112222     


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHH---HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE---RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..-.++|+||+|+.++.. ..+..+++..   -...+++.+|+++++|++++.+.|..+
T Consensus       103 i~~giivltk~D~~d~~r-~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L  160 (447)
T COG3276         103 IKNGIIVLTKADRVDEAR-IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDL  160 (447)
T ss_pred             CCceEEEEeccccccHHH-HHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHh
Confidence            233489999999875321 1122222222   234678999999999999999999875

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.89  E-value=1e-07  Score=74.69  Aligned_cols=160  Identities=15%  Similarity=0.238  Sum_probs=90.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCccccc----------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY   80 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   80 (223)
                      .++|+++|+.|.|||||+|.|++......          ..++..+......+.-++..+.+.++||||..++-.     
T Consensus        23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id-----   97 (373)
T COG5019          23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID-----   97 (373)
T ss_pred             ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc-----
Confidence            58999999999999999999998743222          123333444444444567788899999999554321     


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHH----HHHhcCCceeEEEeCCCccc-cccccccceeEEEeeccc-ccchhhhH
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRE----LRDHADQNIVIMLVGPPSLL-RRYYRGAVGALLVYDIAK-HLTYENVE  154 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~~  154 (223)
                                    +...++.+..+++.    .......         ..-. .-.-.+.++.+|.+.++. +-...+++
T Consensus        98 --------------Ns~~we~I~~yI~~q~d~yl~~E~~---------~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe  154 (373)
T COG5019          98 --------------NSKCWEPIVDYIDDQFDQYLDEEQK---------IKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE  154 (373)
T ss_pred             --------------ccccHHHHHHHHHHHHHHHHHHhhc---------cccccccccCceEEEEEEecCCCCCCCHHHHH
Confidence                          12223333322221    1111110         0001 112257899999998764 45555543


Q ss_pred             HHHHHhhhccCCCceEEEeecccchhh--ccCCChHHHHHHHHHcCCeEEE
Q psy15625        155 RWLRELRDHADQNIVIMLVGNKSDLRH--LRAVPADEAKTFAERNNLSFIE  203 (223)
Q Consensus       155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~  203 (223)
                      . +..+..    .+-+|=|+.|+|.-.  +.....+.+++...++++++|.
T Consensus       155 ~-Mk~ls~----~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         155 A-MKRLSK----RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             H-HHHHhc----ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            3 223332    445677788999642  1122334455555667777663

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.89  E-value=4.8e-09  Score=75.54  Aligned_cols=55  Identities=27%  Similarity=0.417  Sum_probs=39.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG   69 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G   69 (223)
                      .++++++|.||+|||||+|+|.+....... +..+++.....+..+   ..+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEEeC---CCEEEEECcC
Confidence            479999999999999999999987654333 333444443343333   2578999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=3.3e-08  Score=75.88  Aligned_cols=86  Identities=24%  Similarity=0.228  Sum_probs=54.2

Q ss_pred             cceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHHH---cCCeEEEeecCCC
Q psy15625        135 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAER---NNLSFIETSALDS  209 (223)
Q Consensus       135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~  209 (223)
                      .|+.+++++++.+......+..+..+....  -+-++++=||+|+...+.  -..+++++|.+-   .+.+++++||..+
T Consensus       110 MDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~  187 (415)
T COG5257         110 MDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHK  187 (415)
T ss_pred             hcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhc
Confidence            455555555555443333333333343332  246788999999964221  133455555542   3678999999999


Q ss_pred             CCHHHHHHHHHhh
Q psy15625        210 TNVETAFQNILTA  222 (223)
Q Consensus       210 ~~i~~~~~~i~~~  222 (223)
                      .|++.+++.|...
T Consensus       188 ~NIDal~e~i~~~  200 (415)
T COG5257         188 ANIDALIEAIEKY  200 (415)
T ss_pred             cCHHHHHHHHHHh
Confidence            9999999998753

>KOG0468|consensus

Probab=98.82  E-value=3.8e-08  Score=82.12  Aligned_cols=91  Identities=23%  Similarity=0.280  Sum_probs=65.0

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc-----------------cceeeeEEEEEE---EcCeEEEEEEEeCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-----------------TIGVEFATRSIQ---VDQKTIKAQIWDTA   68 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~~~D~~   68 (223)
                      +...+++++|+-..|||+|+..|.....+..+..                 ..++...+.++-   ..++.+-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            3457899999999999999999988766444211                 111111122222   24567779999999


Q ss_pred             CCccccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625         69 GQERYRAITSAYYRGAVGALLVYDIAKHLTY   99 (223)
Q Consensus        69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~   99 (223)
                      |+..+.+-....++.+|++++++|+...-.+
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVml  236 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVML  236 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCcee
Confidence            9998888888888888999988888765543

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=3.6e-08  Score=74.81  Aligned_cols=89  Identities=18%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCccc--------------ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------------LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      ...+.++|+.+|.-+-|||||..+++.....              ......-++++.+..+.+.........+|+||+.+
T Consensus         8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD   87 (394)
T COG0050           8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence            3456799999999999999999998753210              11123446677777777776777889999999877


Q ss_pred             ccccchhhhcCCcEEEEEEeCCC
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~   95 (223)
                      |-.....-..+.|+.|+|+...+
T Consensus        88 YvKNMItgAaqmDgAILVVsA~d  110 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATD  110 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCC
Confidence            75544444455566666666555

>KOG2655|consensus

Probab=98.81  E-value=1e-07  Score=75.04  Aligned_cols=166  Identities=15%  Similarity=0.203  Sum_probs=87.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCccccc---------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY   81 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   81 (223)
                      .++++++|..|.|||||+|.|+...+...         ...+.........+.-++..+.++++||||..+.-+...   
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~---   97 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN---   97 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc---
Confidence            48999999999999999999988744322         112333333333444467778899999999554322111   


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc-cchhhhHHHHHHh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH-LTYENVERWLREL  160 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~  160 (223)
                              +|+.    -...+....++.......         ..-....-.+.++.+|.+.+..+ ....++.. +..+
T Consensus        98 --------~w~p----i~~yi~~q~~~yl~~E~~---------~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~-Mk~l  155 (366)
T KOG2655|consen   98 --------CWRP----IVNYIDSQFDQYLDEESR---------LNRSKIKDNRVHCCLYFISPTGHGLKPLDIEF-MKKL  155 (366)
T ss_pred             --------cchh----hhHHHHHHHHHHHhhhcc---------CCcccccCCceEEEEEEeCCCCCCCcHhhHHH-HHHH
Confidence                    0000    011121111111111000         00111222488999999987755 55555422 2222


Q ss_pred             hhccCCCceEEEeecccchhhcc--CCChHHHHHHHHHcCCeEEEee
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAERNNLSFIETS  205 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~S  205 (223)
                      ..    ++.+|=|+.|+|.-...  ......+.+.....+++++...
T Consensus       156 ~~----~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp  198 (366)
T KOG2655|consen  156 SK----KVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFP  198 (366)
T ss_pred             hc----cccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCC
Confidence            22    56677788899964311  1122334444455566655433

>KOG3886|consensus

Probab=98.81  E-value=8.7e-09  Score=75.45  Aligned_cols=92  Identities=21%  Similarity=0.368  Sum_probs=59.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-----cccchhhhcCC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-----RAITSAYYRGA   84 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~~~~   84 (223)
                      .-||+++|.+|+||||+-..+..+...-. .-+..++++....+.+-| ...+.+||.+|++.+     .......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            35899999999999998777664432211 123333444444443332 357899999998742     23444568889


Q ss_pred             cEEEEEEeCCCcccHHHHH
Q psy15625         85 VGALLVYDIAKHLTYENVE  103 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~  103 (223)
                      +++++|||++..+-...+.
T Consensus        83 ~vli~vFDves~e~~~D~~  101 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFH  101 (295)
T ss_pred             eeeeeeeeccchhhhhhHH
Confidence            9999999988765444444

>KOG0082|consensus

Probab=98.80  E-value=3.1e-08  Score=77.90  Aligned_cols=44  Identities=14%  Similarity=0.218  Sum_probs=37.8

Q ss_pred             EcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc
Q psy15625         55 VDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT   98 (223)
Q Consensus        55 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~   98 (223)
                      +.-+..++.++|++||...+..|.-++.+++++++|.++++.+.
T Consensus       190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq  233 (354)
T KOG0082|consen  190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQ  233 (354)
T ss_pred             EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhh
Confidence            34445689999999999999999999999999999999987543

>KOG2486|consensus

Probab=98.78  E-value=1.7e-08  Score=75.99  Aligned_cols=58  Identities=24%  Similarity=0.190  Sum_probs=39.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc-cceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIGVEFATRSIQVDQKTIKAQIWDTAG   69 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G   69 (223)
                      +...+++++|.+|+|||||+|-+...+....... ..+.+.   .++.-..+-++.+.|.||
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG  192 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPG  192 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccce---eeeeeeccceEEEEecCC
Confidence            4458999999999999999999988665433322 333222   222222334678999999

>cd01856 YlqF YlqF

Probab=98.78  E-value=2.1e-08  Score=72.36  Aligned_cols=58  Identities=22%  Similarity=0.315  Sum_probs=41.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   70 (223)
                      +..++++++|.+|+|||||+|++.+..+.... ...+.+.....+.++   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            34579999999999999999999987764332 333344444444443   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1954|consensus

Probab=98.77  E-value=1.2e-07  Score=74.18  Aligned_cols=48  Identities=10%  Similarity=0.199  Sum_probs=34.2

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEE
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRS   52 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~   52 (223)
                      +...+....|+++|+-..||||+++.|+.+.++.... +..+++++...
T Consensus        52 d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~v  100 (532)
T KOG1954|consen   52 DPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAV  100 (532)
T ss_pred             CcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEE
Confidence            3445566789999999999999999999998874432 33334444443

>KOG1547|consensus

Probab=98.77  E-value=2.6e-07  Score=68.26  Aligned_cols=162  Identities=18%  Similarity=0.226  Sum_probs=85.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCccccccc-------ccceeeeEEEEEEE--cCeEEEEEEEeCCCCccccccchhhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-------STIGVEFATRSIQV--DQKTIKAQIWDTAGQERYRAITSAYY   81 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~   81 (223)
                      .++|+|+|.+|.|||||+|.+..+.+.....       -+.++++...+..+  ++...++.++||||..++-+.     
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN-----  120 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN-----  120 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc-----
Confidence            5899999999999999999998765543211       11123333333333  566778899999995443211     


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHH---------HHHHHhcCCceeEEEeCCCccccccccccceeEEEeeccccc-chh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWL---------RELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHL-TYE  151 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~  151 (223)
                                    ..-++-+.++.         +++.......             ..-.+.++.++.+.++.+. ..-
T Consensus       121 --------------~ncWePI~kyIneQye~yL~eElni~R~kr-------------ipDTRVHcclyFi~ptGhsLrpl  173 (336)
T KOG1547|consen  121 --------------DNCWEPIEKYINEQYEQYLREELNIAREKR-------------IPDTRVHCCLYFIPPTGHSLRPL  173 (336)
T ss_pred             --------------cchhHHHHHHHHHHHHHHHHHHHhHHhhhc-------------CCCceEEEEEEEeCCCCCccCcc
Confidence                          11122221111         1111111111             1224677888888776553 334


Q ss_pred             hhHHHHHHhhhccCCCceEEEeecccchh--hccCCChHHHHHHHHHcCCeEEEeecCCC
Q psy15625        152 NVERWLRELRDHADQNIVIMLVGNKSDLR--HLRAVPADEAKTFAERNNLSFIETSALDS  209 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  209 (223)
                      +++...+ +..    -.-++-|+.|+|-.  +++....+.++.-...+++.+++--+.+.
T Consensus       174 Dieflkr-Lt~----vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fde  228 (336)
T KOG1547|consen  174 DIEFLKR-LTE----VVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDE  228 (336)
T ss_pred             cHHHHHH-Hhh----hheeeeeEeecccccHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence            4332222 222    23456667799953  22333344455555567777776544443

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.76  E-value=3.1e-08  Score=77.40  Aligned_cols=59  Identities=25%  Similarity=0.385  Sum_probs=42.0

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      ...++++++|.||||||||+|+|.+....... +..+.+.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            34689999999999999999999987753332 3334444444444433   47899999953

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.75  E-value=2.9e-08  Score=77.18  Aligned_cols=57  Identities=23%  Similarity=0.380  Sum_probs=41.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   70 (223)
                      ..++++++|.||+|||||+|+|.+....... ...+.+.....+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEEeCC---CEEEEECCCc
Confidence            4689999999999999999999987654333 2334444444444432   4689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=98.74  E-value=2.2e-08  Score=73.58  Aligned_cols=56  Identities=21%  Similarity=0.371  Sum_probs=38.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccc-------cccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAG   69 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G   69 (223)
                      ..+++++|.+|+|||||+|+|.+.....       ......+++.....+.++.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            3579999999999999999999864321       1122234555555554543   469999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01855 YqeH YqeH

Probab=98.74  E-value=5.7e-08  Score=71.38  Aligned_cols=87  Identities=24%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHH-----HHcCC---e
Q psy15625        129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNL---S  200 (223)
Q Consensus       129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~---~  200 (223)
                      ..+...+|++++++|+++......     ..+... ..++|+++|+||+|+.+. ....++...+.     ...+.   +
T Consensus        29 ~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~~-~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  101 (190)
T cd01855          29 SSISPKKALVVHVVDIFDFPGSLI-----PRLRLF-GGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLGLKPKD  101 (190)
T ss_pred             HhcccCCcEEEEEEECccCCCccc-----hhHHHh-cCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcCCCccc
Confidence            345678999999999987643221     222111 236899999999998642 22333344333     22333   5


Q ss_pred             EEEeecCCCCCHHHHHHHHHhh
Q psy15625        201 FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       201 ~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++++||++++|++++++.|.+.
T Consensus       102 i~~vSA~~~~gi~eL~~~l~~~  123 (190)
T cd01855         102 VILISAKKGWGVEELINAIKKL  123 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999998763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.71  E-value=2.4e-08  Score=70.97  Aligned_cols=86  Identities=16%  Similarity=0.118  Sum_probs=57.9

Q ss_pred             cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625        131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST  210 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  210 (223)
                      ....+|.+++++|++.+....+. .....+.   ..++|+++|+||+|+.+...  ......+....+.+++.+||+++.
T Consensus         9 i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSa~~~~   82 (156)
T cd01859           9 IIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYVSAKERL   82 (156)
T ss_pred             HHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEEEccccc
Confidence            44569999999999876554431 2222221   23689999999999853211  111112333456789999999999


Q ss_pred             CHHHHHHHHHhh
Q psy15625        211 NVETAFQNILTA  222 (223)
Q Consensus       211 ~i~~~~~~i~~~  222 (223)
                      |++++++.+.+.
T Consensus        83 gi~~L~~~l~~~   94 (156)
T cd01859          83 GTKILRRTIKEL   94 (156)
T ss_pred             cHHHHHHHHHHH
Confidence            999999998764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01859 MJ1464 MJ1464

Probab=98.71  E-value=5e-08  Score=69.34  Aligned_cols=56  Identities=21%  Similarity=0.307  Sum_probs=39.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG   69 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G   69 (223)
                      ...+++++|.+|+|||||+|++.+.... ...++.+.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4578999999999999999999976533 2334555443333232322   589999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.70  E-value=3.5e-08  Score=78.07  Aligned_cols=58  Identities=26%  Similarity=0.343  Sum_probs=44.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      ..++++|+|.||||||||||+|.+....... +.+|.+.....+..+..   +.++||||..
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEcCCC---eEEecCCCcC
Confidence            3588999999999999999999998874333 44466666666655543   7999999943

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.66  E-value=9.6e-08  Score=74.60  Aligned_cols=87  Identities=13%  Similarity=0.082  Sum_probs=65.8

Q ss_pred             cccccccceeEEEeeccccc-chhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecC
Q psy15625        129 RRYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSAL  207 (223)
Q Consensus       129 ~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  207 (223)
                      .....++|.+++++|+..+. ++..+.+|+..+..   .++|+++|+||+|+.+..  ............+.+++.+||+
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence            33467899999999999887 77777778776654   368999999999996521  1112223334578899999999


Q ss_pred             CCCCHHHHHHHHH
Q psy15625        208 DSTNVETAFQNIL  220 (223)
Q Consensus       208 ~~~~i~~~~~~i~  220 (223)
                      ++.|+++++..+.
T Consensus       148 ~g~gi~~L~~~L~  160 (287)
T cd01854         148 TGEGLDELREYLK  160 (287)
T ss_pred             CCccHHHHHhhhc
Confidence            9999999998764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.65  E-value=9.1e-08  Score=76.39  Aligned_cols=87  Identities=18%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             cccccccceeEEEeeccccc-chhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecC
Q psy15625        129 RRYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSAL  207 (223)
Q Consensus       129 ~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  207 (223)
                      +....++|.+++|+|+..+. ....+..|+.....   .++|+++|+||+|+.....  .+.........|.+++.+||+
T Consensus        84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~iSA~  158 (352)
T PRK12289         84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFISVE  158 (352)
T ss_pred             chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEEEcC
Confidence            34567899999999998654 33445666655532   4789999999999853211  122223334678899999999


Q ss_pred             CCCCHHHHHHHHH
Q psy15625        208 DSTNVETAFQNIL  220 (223)
Q Consensus       208 ~~~~i~~~~~~i~  220 (223)
                      ++.|++++++.+.
T Consensus       159 tg~GI~eL~~~L~  171 (352)
T PRK12289        159 TGIGLEALLEQLR  171 (352)
T ss_pred             CCCCHHHHhhhhc
Confidence            9999999998875

>KOG0464|consensus

Probab=98.65  E-value=6.2e-08  Score=76.92  Aligned_cols=94  Identities=17%  Similarity=0.265  Sum_probs=70.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC--------cccccc--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN--------EFNLES--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      +..+|+++..-.+||||.-.+++.-        .+....        ...-|+++....+.+++++..++++||||+.+|
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf  115 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF  115 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence            3467999999999999999998642        111111        123367788888889999999999999999998


Q ss_pred             cccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625         74 RAITSAYYRGAVGALLVYDIAKHLTYENVE  103 (223)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  103 (223)
                      +--...+.+--|+++.|||.+..-..+.+.
T Consensus       116 ~leverclrvldgavav~dasagve~qtlt  145 (753)
T KOG0464|consen  116 RLEVERCLRVLDGAVAVFDASAGVEAQTLT  145 (753)
T ss_pred             EEEHHHHHHHhcCeEEEEeccCCcccceee
Confidence            887777777777777777776655544444

>KOG0705|consensus

Probab=98.64  E-value=1.2e-07  Score=77.60  Aligned_cols=156  Identities=19%  Similarity=0.330  Sum_probs=111.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      -+.+|++|+|..++|||.|+.+++...+.....+ . ...+.+.+.++++..-+.+.|.+|.     ....|..-.|+++
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~-e-~~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdavI  100 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-E-GGRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAVV  100 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCC-c-CccceeeEEeeccceEeeeecccCC-----chhhhhhhccceE
Confidence            3568999999999999999999988776443322 2 3344556667888878888888883     3445677889999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +||.+.+.++++.+....-.+..                                                  ......+
T Consensus       101 fvf~~~d~~s~q~v~~l~~~l~~--------------------------------------------------~r~r~~i  130 (749)
T KOG0705|consen  101 FVFSVEDEQSFQAVQALAHEMSS--------------------------------------------------YRNISDL  130 (749)
T ss_pred             EEEEeccccCHHHHHHHHhhccc--------------------------------------------------ccccccc
Confidence            99999999999999854443321                                                  1112357


Q ss_pred             eEEEeecccchh--hccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        169 VIMLVGNKSDLR--HLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       169 p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      |+++++++--..  ..+.+...+.++++... .+.+|+.++.+|.++..+|+.+++
T Consensus       131 ~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~  186 (749)
T KOG0705|consen  131 PLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQ  186 (749)
T ss_pred             hHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHH
Confidence            777777765443  23344445555555444 567999999999999999998765

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.60  E-value=1.2e-05  Score=56.12  Aligned_cols=57  Identities=25%  Similarity=0.342  Sum_probs=41.7

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA   68 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   68 (223)
                      ....||++.|+||+||||++.++.+.-....+  .+ .-+.+..+.-+++..-|.+.|+.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kv-gGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KV-GGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc--ee-eeEEeeeeecCCeEeeeEEEEcc
Confidence            34689999999999999999998765433222  12 13334455568888899999988

>PRK00098 GTPase RsgA; Reviewed

Probab=98.59  E-value=1.8e-07  Score=73.52  Aligned_cols=85  Identities=19%  Similarity=0.138  Sum_probs=62.0

Q ss_pred             ccccceeEEEeecccccchhh-hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625        132 YRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST  210 (223)
Q Consensus       132 ~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  210 (223)
                      -.++|.+++++|+..+..... +..|+..+..   .++|+++|+||+|+.+... ...+........+.+++++||+++.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            478999999999987755433 3566655543   4789999999999963211 1223344455678899999999999


Q ss_pred             CHHHHHHHHH
Q psy15625        211 NVETAFQNIL  220 (223)
Q Consensus       211 ~i~~~~~~i~  220 (223)
                      |++++++.+.
T Consensus       154 gi~~L~~~l~  163 (298)
T PRK00098        154 GLDELKPLLA  163 (298)
T ss_pred             cHHHHHhhcc
Confidence            9999998764

>cd01858 NGP_1 NGP-1

Probab=98.59  E-value=1.6e-07  Score=66.85  Aligned_cols=88  Identities=14%  Similarity=0.049  Sum_probs=55.3

Q ss_pred             cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625        131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST  210 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  210 (223)
                      ....+|.++++.|++.+....+ ......+... ..++|+++|+||+|+.+... .......+........+.+||+.+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC-HHHHHHHHhc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence            3467999999999998744322 1222233222 33589999999999854221 1111222222222335789999999


Q ss_pred             CHHHHHHHHHh
Q psy15625        211 NVETAFQNILT  221 (223)
Q Consensus       211 ~i~~~~~~i~~  221 (223)
                      |++++++.+.+
T Consensus        82 ~~~~L~~~l~~   92 (157)
T cd01858          82 GKGSLIQLLRQ   92 (157)
T ss_pred             cHHHHHHHHHH
Confidence            99999998865

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.58  E-value=1.7e-07  Score=66.49  Aligned_cols=55  Identities=22%  Similarity=0.273  Sum_probs=37.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAG   69 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G   69 (223)
                      ...+++++|.||+|||||+|++.+...... ..+.  ++........+   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~--~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPG--TTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCC--cccceEEEEec---CCEEEEECCC
Confidence            457899999999999999999998764222 2222  22223333332   2579999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.57  E-value=6.7e-08  Score=68.16  Aligned_cols=59  Identities=24%  Similarity=0.300  Sum_probs=33.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccccccc------ccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK------STIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      -.++++|++|||||||+|.|..........      ..--++.....+.++..   ..++||||..++
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            368999999999999999999874322211      11111222333444333   378999995443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.57  E-value=2.8e-07  Score=73.56  Aligned_cols=86  Identities=15%  Similarity=0.121  Sum_probs=64.9

Q ss_pred             cccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHHHcCCeEEEeecCCCCC
Q psy15625        133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAERNNLSFIETSALDSTN  211 (223)
Q Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~  211 (223)
                      .++|.+++|++.....++..+..|+.....   .++|.++|+||+|+.+.... ...+........+.+++++||+++.|
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G  195 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG  195 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence            579999999998888888888888765543   36899999999999642210 11222233345688999999999999


Q ss_pred             HHHHHHHHHh
Q psy15625        212 VETAFQNILT  221 (223)
Q Consensus       212 i~~~~~~i~~  221 (223)
                      ++++++.|..
T Consensus       196 ideL~~~L~~  205 (347)
T PRK12288        196 LEELEAALTG  205 (347)
T ss_pred             HHHHHHHHhh
Confidence            9999998864

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.56  E-value=2.5e-07  Score=74.57  Aligned_cols=54  Identities=28%  Similarity=0.340  Sum_probs=41.0

Q ss_pred             CceEEEeecccchhhccCCChHHHHH----HHHHcCC---eEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKT----FAERNNL---SFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +.|+++|+||+|+.+ +....++...    ++.+.++   .++.+||++++|++++++.|.+
T Consensus        90 ~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~  150 (360)
T TIGR03597        90 GNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKK  150 (360)
T ss_pred             CCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence            579999999999965 2333444443    3455666   4899999999999999999864

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.54  E-value=1.9e-07  Score=74.53  Aligned_cols=58  Identities=22%  Similarity=0.345  Sum_probs=36.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccccccc------eeeeEEEEEEEcCeEEEEEEEeCCCCcccc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTI------GVEFATRSIQVDQKTIKAQIWDTAGQERYR   74 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~   74 (223)
                      ++|+|.+|||||||+|+|.+........-..      -++.....+.+++..   .++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            7899999999999999999765432221110      122333334444332   589999965544

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.54  E-value=3e-07  Score=65.28  Aligned_cols=82  Identities=16%  Similarity=0.039  Sum_probs=53.4

Q ss_pred             ceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHH
Q psy15625        136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETA  215 (223)
Q Consensus       136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  215 (223)
                      |.++++.|++.+.+...  .++.. ......++|+++|+||+|+.+.... .+....+....+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            57899999988766554  22321 1222247899999999998532110 01111222233567899999999999999


Q ss_pred             HHHHHh
Q psy15625        216 FQNILT  221 (223)
Q Consensus       216 ~~~i~~  221 (223)
                      ++.+.+
T Consensus        77 ~~~i~~   82 (155)
T cd01849          77 ESAFTK   82 (155)
T ss_pred             HHHHHH
Confidence            998754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0448|consensus

Probab=98.52  E-value=1.6e-06  Score=72.93  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=27.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccccccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK   41 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~   41 (223)
                      -..||+|.|..++||||++|+++..+..+...
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~  139 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGI  139 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccc
Confidence            45799999999999999999999988766654

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.51  E-value=7.6e-07  Score=70.17  Aligned_cols=185  Identities=15%  Similarity=0.121  Sum_probs=97.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE---cCeEEEEEEEeCCCCc--cc-ccc----c
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---DQKTIKAQIWDTAGQE--RY-RAI----T   77 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~--~~-~~~----~   77 (223)
                      -+..+.+++.|.-+.|||||+..|.........-.+-+. .....+.+   -...+++.++-..+..  .. .++    .
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~-ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSY-LDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhh-hhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            345789999999999999999999877654443221110 00000111   0112233333333211  00 111    1


Q ss_pred             hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625         78 SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL  157 (223)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (223)
                      ...++.+|-++..+|....+.+-..  .++-+                     .-...|=.+++..++++.+...-  . 
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrT--tirGL---------------------~gqk~dYglLvVaAddG~~~~tk--E-  246 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRT--TIRGL---------------------LGQKVDYGLLVVAADDGVTKMTK--E-  246 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHH--HHHHH---------------------hccccceEEEEEEccCCcchhhh--H-
Confidence            2235677777777777766543221  11111                     11235556666666666555441  1 


Q ss_pred             HHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHH----------------------Hc---CCeEEEeecCCCC
Q psy15625        158 RELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAE----------------------RN---NLSFIETSALDST  210 (223)
Q Consensus       158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~----------------------~~---~~~~~~~Sa~~~~  210 (223)
                       -+.....-..|+++++||+|+.+...+  ..+++.++.+                      +.   -+|++.+|+.+|+
T Consensus       247 -HLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~  325 (527)
T COG5258         247 -HLGIALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE  325 (527)
T ss_pred             -hhhhhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc
Confidence             122222237899999999998542110  1112222211                      11   2579999999999


Q ss_pred             CHHHHHHHHH
Q psy15625        211 NVETAFQNIL  220 (223)
Q Consensus       211 ~i~~~~~~i~  220 (223)
                      |++-+.+.+.
T Consensus       326 GldlL~e~f~  335 (527)
T COG5258         326 GLDLLDEFFL  335 (527)
T ss_pred             cHHHHHHHHH
Confidence            9987666544

>PRK12289 GTPase RsgA; Reviewed

Probab=98.47  E-value=3.1e-07  Score=73.40  Aligned_cols=57  Identities=26%  Similarity=0.281  Sum_probs=36.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccce-------eeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG-------VEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      .++|+|++|||||||+|+|.+......... .+       ++.....+.+++..   .++||||...+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~v-s~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKV-SGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccc-cCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            379999999999999999997654332211 11       23333444443332   68999995443

>KOG3887|consensus

Probab=98.41  E-value=1.2e-06  Score=64.86  Aligned_cols=83  Identities=18%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc---chhhhcCCcEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI---TSAYYRGAVGAL   88 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~---~~~~~~~~~~~i   88 (223)
                      .+|+++|...+||||+......... +...-..+.+-....-.+.+..+.+.+||.||+-.+..-   ....++++.+++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccC-CCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            5699999999999998776654432 222111111111111223345678999999998655332   245689999999


Q ss_pred             EEEeCCC
Q psy15625         89 LVYDIAK   95 (223)
Q Consensus        89 ~v~d~~~   95 (223)
                      +|+|..+
T Consensus       107 fvIDaQd  113 (347)
T KOG3887|consen  107 FVIDAQD  113 (347)
T ss_pred             EEEechH
Confidence            9999754

>PRK13796 GTPase YqeH; Provisional

Probab=98.41  E-value=5.3e-07  Score=72.79  Aligned_cols=57  Identities=25%  Similarity=0.368  Sum_probs=38.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc----cccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL----ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      .++.++|.+|||||||+|+|.+.....    ...+..+++.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            479999999999999999998643111    11233445555555545433   3799999953

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.40  E-value=7.5e-07  Score=67.98  Aligned_cols=56  Identities=23%  Similarity=0.235  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccc------cceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKS------TIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      .++++|.+|||||||+|+|.+........-      ...++.....+.+.+    -.++||||...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~  183 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE  183 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence            689999999999999999998644322111      111233333343432    27899999543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=4.3e-06  Score=69.17  Aligned_cols=83  Identities=22%  Similarity=0.211  Sum_probs=48.0

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      +...++++-++|+|+||+|||||++.|.......    ++.--..+.++ +.++...+.++.+|.+  ...+ ....+-+
T Consensus        63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~----ti~~i~GPiTv-vsgK~RRiTflEcp~D--l~~m-iDvaKIa  134 (1077)
T COG5192          63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ----TIDEIRGPITV-VSGKTRRITFLECPSD--LHQM-IDVAKIA  134 (1077)
T ss_pred             cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHh----hhhccCCceEE-eecceeEEEEEeChHH--HHHH-HhHHHhh
Confidence            3455668889999999999999999987643211    11111112222 4556668899999852  1111 1123344


Q ss_pred             cEEEEEEeCCC
Q psy15625         85 VGALLVYDIAK   95 (223)
Q Consensus        85 ~~~i~v~d~~~   95 (223)
                      |.+++.+|-+-
T Consensus       135 DLVlLlIdgnf  145 (1077)
T COG5192         135 DLVLLLIDGNF  145 (1077)
T ss_pred             heeEEEecccc
Confidence            55555555443

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.39  E-value=3.6e-06  Score=63.40  Aligned_cols=86  Identities=16%  Similarity=0.050  Sum_probs=51.7

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC--cccccccccceeeeEEEEEEEc---CeEEEEEEEeCCCCccccc------cc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFNLESKSTIGVEFATRSIQVD---QKTIKAQIWDTAGQERYRA------IT   77 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~G~~~~~~------~~   77 (223)
                      .+..-|+|+|++++|||||+|.|.+.  .+....... .++.....+...   +....+.++||+|..+...      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~-~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQ-QTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCC-CCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            45667999999999999999999998  665443211 122222222222   2346899999999654322      12


Q ss_pred             hhhhcC--CcEEEEEEeCCC
Q psy15625         78 SAYYRG--AVGALLVYDIAK   95 (223)
Q Consensus        78 ~~~~~~--~~~~i~v~d~~~   95 (223)
                      ...+..  ++.+++..+...
T Consensus        84 ~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          84 LFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcc
Confidence            223333  666665555443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.37  E-value=1.1e-06  Score=61.28  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             cccccceeEEEeecccccchhh--hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCC
Q psy15625        131 YYRGAVGALLVYDIAKHLTYEN--VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALD  208 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  208 (223)
                      ....+|.+++++|++.+.+..+  +..++...   . .++|+++|+||+|+.+...  ..+..+...+.+.+++++||++
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~~   81 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSALK   81 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEecC
Confidence            3467999999999998876553  33333322   1 3689999999999854221  2233444556677899999998


Q ss_pred             CCC
Q psy15625        209 STN  211 (223)
Q Consensus       209 ~~~  211 (223)
                      +.+
T Consensus        82 ~~~   84 (141)
T cd01857          82 ENA   84 (141)
T ss_pred             CCc
Confidence            764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.37  E-value=1e-06  Score=71.02  Aligned_cols=57  Identities=23%  Similarity=0.368  Sum_probs=37.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc----cccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL----ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      .++.++|.+|||||||+|+|.+.....    ......+++.....+.++.   .+.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence            489999999999999999999854211    1112233444444444422   24799999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1143|consensus

Probab=98.36  E-value=1.1e-07  Score=74.54  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES   40 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~   40 (223)
                      +.+.-.++++++|...+|||||+..|+..+.....
T Consensus       162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~  196 (591)
T KOG1143|consen  162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGN  196 (591)
T ss_pred             cccceEEEEEEecCcccCcceeeeeeecccccCCC
Confidence            34445799999999999999999999988765443

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.36  E-value=8.4e-07  Score=68.38  Aligned_cols=59  Identities=24%  Similarity=0.213  Sum_probs=37.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc------cccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF------NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR   74 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~   74 (223)
                      ..+++|.+|||||||+|+|..+..      .......--++.....+.+++.+   .+.||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            578999999999999999986322      11221111234445556565444   679999965443

>KOG1424|consensus

Probab=98.33  E-value=8.1e-07  Score=72.36  Aligned_cols=56  Identities=23%  Similarity=0.248  Sum_probs=41.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   70 (223)
                      .+.|+++|.|||||||+||+|.+.+.-... .|+|-+-.-.++.+..   .+.+.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCc
Confidence            589999999999999999999998864443 5555544444443332   5689999994

>KOG4273|consensus

Probab=98.32  E-value=1.5e-05  Score=59.57  Aligned_cols=96  Identities=20%  Similarity=0.261  Sum_probs=58.6

Q ss_pred             EEEEEEcCCCC--cHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         12 FKVVLIGDSGV--GKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        12 ~~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..++|+|.+|+  ||-+|+.+|....+.........+.+...++...+....+.+.=.+--.++.-..........++++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm   84 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM   84 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence            46889999999  9999999999888766655444444444443322211122222211111111111122344568899


Q ss_pred             EEeCCCcccHHHHHHHHH
Q psy15625         90 VYDIAKHLTYENVERWLR  107 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~  107 (223)
                      +||.+..+.+..++.|+-
T Consensus        85 vfdlse~s~l~alqdwl~  102 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLP  102 (418)
T ss_pred             EEeccchhhhHHHHhhcc
Confidence            999999999999998754

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.30  E-value=5.1e-06  Score=76.49  Aligned_cols=129  Identities=25%  Similarity=0.304  Sum_probs=71.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccc----c--ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLES----K--STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      -+|+|++|+||||+++.- +-.++-..    .  ...+.+. ...+.+..   ...++||+|.--...            
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~------------  176 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQD------------  176 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCC------------
Confidence            579999999999999886 33332211    0  1111111 12222333   346899999311000            


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccc---------hhhhHHHHH
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT---------YENVERWLR  158 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~~~~~~  158 (223)
                           ......-.....++..+.++...                 +..+++|+++++.+-.+         ...++.-+.
T Consensus       177 -----~~~~~~~~~W~~fL~~L~k~R~r-----------------~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~  234 (1169)
T TIGR03348       177 -----SDPEEDAAAWLGFLGLLRKHRRR-----------------QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQ  234 (1169)
T ss_pred             -----CcccccHHHHHHHHHHHHHhCCC-----------------CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHH
Confidence                 00011122233344444443322                 34778888888774422         134556667


Q ss_pred             HhhhccCCCceEEEeecccchhh
Q psy15625        159 ELRDHADQNIVIMLVGNKSDLRH  181 (223)
Q Consensus       159 ~~~~~~~~~~p~ivv~nK~Dl~~  181 (223)
                      ++....+.+.|+.|++||+|+..
T Consensus       235 el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       235 ELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHhCCCCCEEEEEecchhhc
Confidence            77777777999999999999853

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01856 YlqF YlqF

Probab=98.30  E-value=2.1e-06  Score=61.92  Aligned_cols=83  Identities=17%  Similarity=0.080  Sum_probs=55.0

Q ss_pred             cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625        131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST  210 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  210 (223)
                      ..+.+|.+++++|++.+....+. .....+     .++|+++|+||+|+.+...  .....+.....+..++.+||+++.
T Consensus        16 ~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~iSa~~~~   87 (171)
T cd01856          16 KLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFVNAKSGK   87 (171)
T ss_pred             HHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEEECCCcc
Confidence            33579999999999877554332 111111     2478999999999853211  111212223345578999999999


Q ss_pred             CHHHHHHHHHh
Q psy15625        211 NVETAFQNILT  221 (223)
Q Consensus       211 ~i~~~~~~i~~  221 (223)
                      |++++.+.+.+
T Consensus        88 gi~~L~~~l~~   98 (171)
T cd01856          88 GVKKLLKAAKK   98 (171)
T ss_pred             cHHHHHHHHHH
Confidence            99999988765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.29  E-value=2.4e-06  Score=66.43  Aligned_cols=84  Identities=18%  Similarity=0.164  Sum_probs=56.2

Q ss_pred             cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625        131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST  210 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  210 (223)
                      ....+|.++++.|++.+.+...  ..+....    .++|+++|+||+|+.+...  .....+...+.+.+++.+||+++.
T Consensus        18 ~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa~~~~   89 (276)
T TIGR03596        18 KLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINAKKGK   89 (276)
T ss_pred             HHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEECCCcc
Confidence            3457999999999988766544  1111111    2579999999999853211  111111223346678999999999


Q ss_pred             CHHHHHHHHHhh
Q psy15625        211 NVETAFQNILTA  222 (223)
Q Consensus       211 ~i~~~~~~i~~~  222 (223)
                      |++++.+.+.+.
T Consensus        90 gi~~L~~~i~~~  101 (276)
T TIGR03596        90 GVKKIIKAAKKL  101 (276)
T ss_pred             cHHHHHHHHHHH
Confidence            999998887653

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.27  E-value=4.4e-05  Score=60.45  Aligned_cols=70  Identities=10%  Similarity=0.041  Sum_probs=41.6

Q ss_pred             ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625        134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE  213 (223)
Q Consensus       134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  213 (223)
                      ..+.+++|+|++.+.....  . .......   -.+.-+++||.|...    ..-.........+.|+.+++  +|++++
T Consensus       232 ~p~~~~LVl~a~~g~~~~~--~-a~~f~~~---~~~~giIlTKlD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~  299 (318)
T PRK10416        232 APHEVLLVLDATTGQNALS--Q-AKAFHEA---VGLTGIILTKLDGTA----KGGVVFAIADELGIPIKFIG--VGEGID  299 (318)
T ss_pred             CCceEEEEEECCCChHHHH--H-HHHHHhh---CCCCEEEEECCCCCC----CccHHHHHHHHHCCCEEEEe--CCCChh
Confidence            3566889999986532211  1 1111111   123468899999543    12244555667799988888  677776


Q ss_pred             HH
Q psy15625        214 TA  215 (223)
Q Consensus       214 ~~  215 (223)
                      ++
T Consensus       300 Dl  301 (318)
T PRK10416        300 DL  301 (318)
T ss_pred             hC
Confidence            54

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.26  E-value=1.7e-05  Score=62.66  Aligned_cols=176  Identities=21%  Similarity=0.215  Sum_probs=87.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDI   93 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   93 (223)
                      .++.|-=|||||||++.++.+... .       .+-.  +..+...+.+   |- | ............-.+++++|- +
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g-~-------kiAV--IVNEfGEvgI---D~-~-~~l~~~~e~~~El~nGCICCT-~   67 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDG-K-------KIAV--IVNEFGEVGI---DG-G-ALLSDTGEEVVELTNGCICCT-V   67 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCC-C-------cEEE--EEecCccccc---cC-C-CccccCCccEEEeCCceEEEe-c
Confidence            578899999999999999987641 1       1101  1011111111   10 0 000011111334445555433 2


Q ss_pred             CCcccHHHHHHHHHHHHHhcCCceeEEEeCCCcc---cc--------ccccccceeEEEeecccccchhh-hHHHHHHhh
Q psy15625         94 AKHLTYENVERWLRELRDHADQNIVIMLVGPPSL---LR--------RYYRGAVGALLVYDIAKHLTYEN-VERWLRELR  161 (223)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~  161 (223)
                      . .+-...+....+ .+.. .+.+.|+..+-...   ..        ...-..|+++-++|+.+-....+ +.......-
T Consensus        68 r-~dl~~~~~~L~~-~~~~-~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi  144 (323)
T COG0523          68 R-DDLLPALERLLR-RRDR-PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL  144 (323)
T ss_pred             c-chhHHHHHHHHh-ccCC-CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH
Confidence            1 122333333333 2222 44455554443222   11        12247788999999998766544 323322222


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHH
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAF  216 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~  216 (223)
                      ...     =+|++||+|+.+...  .+..+....+.  .++++.++. .+.+..+++
T Consensus       145 a~A-----D~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         145 AFA-----DVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             HhC-----cEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            222     288999999976442  44445555544  456888776 344444433

>PRK14974 cell division protein FtsY; Provisional

Probab=98.24  E-value=2.8e-05  Score=61.80  Aligned_cols=71  Identities=11%  Similarity=-0.027  Sum_probs=42.5

Q ss_pred             ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625        134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE  213 (223)
Q Consensus       134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  213 (223)
                      ..+.+++|+|+..+........   .+....   .+--+++||.|...    ..=....++...+.|+.+++  +|++++
T Consensus       252 ~pd~~iLVl~a~~g~d~~~~a~---~f~~~~---~~~giIlTKlD~~~----~~G~~ls~~~~~~~Pi~~i~--~Gq~v~  319 (336)
T PRK14974        252 KPDLVIFVGDALAGNDAVEQAR---EFNEAV---GIDGVILTKVDADA----KGGAALSIAYVIGKPILFLG--VGQGYD  319 (336)
T ss_pred             CCceEEEeeccccchhHHHHHH---HHHhcC---CCCEEEEeeecCCC----CccHHHHHHHHHCcCEEEEe--CCCChh
Confidence            4677889999877643332211   111111   12367899999754    12234455556788888887  688887


Q ss_pred             HHH
Q psy15625        214 TAF  216 (223)
Q Consensus       214 ~~~  216 (223)
                      ++.
T Consensus       320 Dl~  322 (336)
T PRK14974        320 DLI  322 (336)
T ss_pred             hcc
Confidence            653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.23  E-value=2.9e-06  Score=66.38  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=37.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccccccccc------ceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKST------IGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      -.++++|++|+|||||+|.|.+..........      ..++.....+.....   ..++|+||..++
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            46999999999999999999986543322111      112232333334322   268999996544

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.23  E-value=2.9e-06  Score=66.67  Aligned_cols=57  Identities=25%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccc------eeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI------GVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      .++++|++|||||||+|+|.+........-..      .++.....+.+++.   ..++||||..+
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            58999999999999999998765432221110      02222333333332   37899999543

>KOG0465|consensus

Probab=98.22  E-value=4.7e-06  Score=69.32  Aligned_cols=97  Identities=16%  Similarity=0.239  Sum_probs=67.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccc-----c-----------cccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----S-----------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      ++.-+|++.-.-.+||||+-++++...-...     .           ...-+++.......+.++...++++||||+.+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            3456799999999999999999765321110     0           01223444444444566788999999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW  105 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  105 (223)
                      |.--....++--|+++++++....-..+....|
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~  149 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVW  149 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHH
Confidence            988888888888888888887776555555433

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.21  E-value=4.4e-06  Score=65.37  Aligned_cols=84  Identities=18%  Similarity=0.158  Sum_probs=56.9

Q ss_pred             cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625        131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST  210 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  210 (223)
                      ....+|.++++.|++.+.+...  .++....   . ++|+++|+||+|+.+...  .+.......+.+.+++.+|++++.
T Consensus        21 ~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~~~~   92 (287)
T PRK09563         21 NLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAKKGQ   92 (287)
T ss_pred             HhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECCCcc
Confidence            3457999999999988766554  2222221   1 579999999999853210  111222223446778999999999


Q ss_pred             CHHHHHHHHHhh
Q psy15625        211 NVETAFQNILTA  222 (223)
Q Consensus       211 ~i~~~~~~i~~~  222 (223)
                      |++++.+.+.+.
T Consensus        93 gi~~L~~~l~~~  104 (287)
T PRK09563         93 GVKKILKAAKKL  104 (287)
T ss_pred             cHHHHHHHHHHH
Confidence            999999887653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.19  E-value=0.00011  Score=56.90  Aligned_cols=70  Identities=11%  Similarity=0.023  Sum_probs=42.1

Q ss_pred             ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625        134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE  213 (223)
Q Consensus       134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  213 (223)
                      ..+.+++|+|+..+.....  . ...+....   .+--+++||.|...    ..-....+....+.|+.+++  +|++++
T Consensus       190 ~~~~~~LVl~a~~~~~~~~--~-~~~f~~~~---~~~g~IlTKlDe~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~  257 (272)
T TIGR00064       190 APDEVLLVLDATTGQNALE--Q-AKVFNEAV---GLTGIILTKLDGTA----KGGIILSIAYELKLPIKFIG--VGEKID  257 (272)
T ss_pred             CCceEEEEEECCCCHHHHH--H-HHHHHhhC---CCCEEEEEccCCCC----CccHHHHHHHHHCcCEEEEe--CCCChH
Confidence            3788999999975532221  1 12222111   13478899999754    22244455556688888888  677776


Q ss_pred             HH
Q psy15625        214 TA  215 (223)
Q Consensus       214 ~~  215 (223)
                      ++
T Consensus       258 dl  259 (272)
T TIGR00064       258 DL  259 (272)
T ss_pred             hC
Confidence            54

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0467|consensus

Probab=98.14  E-value=9.2e-06  Score=69.19  Aligned_cols=95  Identities=17%  Similarity=0.269  Sum_probs=68.9

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCccccc--------------ccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--------------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   70 (223)
                      +......-+|+++..-.=|||||...|....--..              ..-+-+++.....+..-...+.++++|.|||
T Consensus         3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh   82 (887)
T KOG0467|consen    3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH   82 (887)
T ss_pred             CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence            34455677899999999999999999976432111              1122344444444444456678999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625         71 ERYRAITSAYYRGAVGALLVYDIAKHLTY   99 (223)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~   99 (223)
                      .+|.+......+-+|++++.+|+...--.
T Consensus        83 vdf~sevssas~l~d~alvlvdvvegv~~  111 (887)
T KOG0467|consen   83 VDFSSEVSSASRLSDGALVLVDVVEGVCS  111 (887)
T ss_pred             cchhhhhhhhhhhcCCcEEEEeeccccch
Confidence            99999999999999999988888765443

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.12  E-value=3.7e-05  Score=61.90  Aligned_cols=82  Identities=11%  Similarity=0.144  Sum_probs=49.7

Q ss_pred             eeEEEeecccccch--hhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecC--CCCCH
Q psy15625        137 GALLVYDIAKHLTY--ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSAL--DSTNV  212 (223)
Q Consensus       137 ~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i  212 (223)
                      ++++..|.+-..-.  .++...-+.+.....-++|+++++|-.+...  .-..+...++..+++++++++++.  +...+
T Consensus       148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI  225 (492)
T PF09547_consen  148 GIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDI  225 (492)
T ss_pred             eEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHH
Confidence            34444555533222  2333333444444445899999999988533  234456677777889998887754  45677


Q ss_pred             HHHHHHHH
Q psy15625        213 ETAFQNIL  220 (223)
Q Consensus       213 ~~~~~~i~  220 (223)
                      ..+++.+.
T Consensus       226 ~~Il~~vL  233 (492)
T PF09547_consen  226 TRILEEVL  233 (492)
T ss_pred             HHHHHHHH
Confidence            77776654

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK13796 GTPase YqeH; Provisional

Probab=98.10  E-value=1.7e-05  Score=64.06  Aligned_cols=79  Identities=25%  Similarity=0.372  Sum_probs=54.4

Q ss_pred             ceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHH----HHHcCC---eEEEeecCC
Q psy15625        136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTF----AERNNL---SFIETSALD  208 (223)
Q Consensus       136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~~~~Sa~~  208 (223)
                      +.+++++|+.+..     ..|...+..... +.|+++|+||+|+.+ +....++...+    +...|+   .++.+||++
T Consensus        71 ~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~  143 (365)
T PRK13796         71 ALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK  143 (365)
T ss_pred             cEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC
Confidence            3788899987643     233444444332 678999999999964 23333444333    445565   589999999


Q ss_pred             CCCHHHHHHHHHh
Q psy15625        209 STNVETAFQNILT  221 (223)
Q Consensus       209 ~~~i~~~~~~i~~  221 (223)
                      +.|++++++.|.+
T Consensus       144 g~gI~eL~~~I~~  156 (365)
T PRK13796        144 GHGIDELLEAIEK  156 (365)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999865

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.09  E-value=1.5e-05  Score=56.71  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +.++|..|+|||||++++....
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~~   24 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTEQ   24 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhcc
Confidence            6799999999999999998763

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.08  E-value=1.3e-05  Score=64.60  Aligned_cols=83  Identities=14%  Similarity=0.198  Sum_probs=58.8

Q ss_pred             ccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHH-HcCCeEEEeecCCCC
Q psy15625        132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAE-RNNLSFIETSALDST  210 (223)
Q Consensus       132 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~  210 (223)
                      -.+.|.++++.++........+..++......   ++|.++|+||+|+.+..   .+....+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            46899999999997555555555666555543   66778899999996521   111222222 357789999999999


Q ss_pred             CHHHHHHHHH
Q psy15625        211 NVETAFQNIL  220 (223)
Q Consensus       211 ~i~~~~~~i~  220 (223)
                      |++++.+++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999998874

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.08  E-value=5.8e-05  Score=53.06  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+++|.+|+||||++..+...
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~   22 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITA   22 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998754

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.07  E-value=0.00021  Score=51.93  Aligned_cols=59  Identities=22%  Similarity=0.146  Sum_probs=32.2

Q ss_pred             cccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHc
Q psy15625        133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN  197 (223)
Q Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~  197 (223)
                      -..+.++.+.|+..-.........+...-...     =++++||+|+.+.. ...+..++..++.
T Consensus       112 ~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~-~~i~~~~~~ir~l  170 (178)
T PF02492_consen  112 FRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE-QKIERVREMIREL  170 (178)
T ss_dssp             ESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH---HHHHHHHHHHH
T ss_pred             ccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-hHHHHHHHHHHHH
Confidence            46788999999966433333322222222222     27899999998744 2235555555544

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG2484|consensus

Probab=98.01  E-value=5.1e-06  Score=65.85  Aligned_cols=58  Identities=24%  Similarity=0.403  Sum_probs=41.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   70 (223)
                      ..+++++|+|.||+||||+||+|.....-... +..|.+.....+.++.   .+.+.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence            45799999999999999999999988763333 2333433333333332   5789999994

>PRK13695 putative NTPase; Provisional

Probab=98.01  E-value=0.00019  Score=51.92  Aligned_cols=55  Identities=11%  Similarity=0.134  Sum_probs=33.4

Q ss_pred             HHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ...+......+.|++++.+|....       .....+....+..++++   +.+|-+++.+.+.+
T Consensus       116 ~~~l~~~~~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~  170 (174)
T PRK13695        116 VKAVEEVLDSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL---TPENRDSLPFEILN  170 (174)
T ss_pred             HHHHHHHHhCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---cchhhhhHHHHHHH
Confidence            344433334578999999985432       23344555566677776   55566677776654

>KOG0463|consensus

Probab=98.00  E-value=6.1e-05  Score=59.61  Aligned_cols=26  Identities=35%  Similarity=0.565  Sum_probs=22.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      ..+|+++|.-.+|||||+..|+..+.
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeL  158 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGEL  158 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeeccc
Confidence            68999999999999999988876544

>KOG0447|consensus

Probab=97.95  E-value=0.00036  Score=57.96  Aligned_cols=63  Identities=14%  Similarity=0.123  Sum_probs=37.4

Q ss_pred             cccccceeEEEe-ecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHH
Q psy15625        131 YYRGAVGALLVY-DIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER  196 (223)
Q Consensus       131 ~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  196 (223)
                      ++.+..+||+|+ |.+-.+....+..   .+....+.+...|+|++|.|+.+....+...++++..-
T Consensus       445 yM~NPNAIILCIQDGSVDAERSnVTD---LVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG  508 (980)
T KOG0447|consen  445 YMQNPNAIILCIQDGSVDAERSIVTD---LVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG  508 (980)
T ss_pred             HhcCCCeEEEEeccCCcchhhhhHHH---HHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence            445566666666 2221111111122   23444445677899999999998667777777777654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.95  E-value=0.00015  Score=53.41  Aligned_cols=24  Identities=25%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ..|+++|++||||||.+-+|....
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHH
Confidence            358999999999999999987543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG2485|consensus

Probab=97.93  E-value=1.6e-05  Score=61.25  Aligned_cols=62  Identities=21%  Similarity=0.380  Sum_probs=39.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccc----cccceeeeEEEE-EEEcCeEEEEEEEeCCCC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES----KSTIGVEFATRS-IQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~D~~G~   70 (223)
                      .+..+++.|+|.||+|||||+|++.........    -+.+|.+..... +.+.... .+.+.||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            345789999999999999999998764432221    122233333332 3333333 5889999994

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.93  E-value=0.00012  Score=59.87  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +..|+++|++||||||++.+|..
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~  122 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAY  122 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999863

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0460|consensus

Probab=97.91  E-value=4.2e-05  Score=59.67  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcc----------c----ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF----------N----LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      ...+.++|+-+|.-.=|||||-.+++.-..          .    ..-...-|+++...++.+.......-=.|+||+.+
T Consensus        50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD  129 (449)
T ss_pred             cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence            345679999999999999999999875211          0    01113446677777777766666677789999887


Q ss_pred             ccccchhhhcCCcEEEEEEeCCC
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~   95 (223)
                      |-.....-....|+.++|+..++
T Consensus       130 YIKNMItGaaqMDGaILVVaatD  152 (449)
T KOG0460|consen  130 YIKNMITGAAQMDGAILVVAATD  152 (449)
T ss_pred             HHHHhhcCccccCceEEEEEcCC
Confidence            76555444556677777777766

>KOG3859|consensus

Probab=97.86  E-value=3.9e-05  Score=58.27  Aligned_cols=61  Identities=26%  Similarity=0.468  Sum_probs=45.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccc----cccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES----KSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      .++|+.+|..|.|||||+..|.+-.+....    .+.+.....+..++-.+..+.+.++||.|..
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG  106 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFG  106 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence            689999999999999999999998775432    2344444444444446677889999999954

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.85  E-value=0.00029  Score=58.13  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+..|+++|++|+||||++.+|...
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~  118 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARY  118 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4678999999999999999998753

>KOG1534|consensus

Probab=97.84  E-value=3.3e-05  Score=56.29  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +-+.|+|++|+||||+++.+...
T Consensus         4 ya~lV~GpAgSGKSTyC~~~~~h   26 (273)
T KOG1534|consen    4 YAQLVMGPAGSGKSTYCSSMYEH   26 (273)
T ss_pred             eeEEEEccCCCCcchHHHHHHHH
Confidence            56889999999999999998753

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.84  E-value=0.00083  Score=48.44  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -++++|++|+||||+...+...
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~   23 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALY   23 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999888654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.77  E-value=7.5e-05  Score=53.58  Aligned_cols=52  Identities=23%  Similarity=0.337  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT   67 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   67 (223)
                      +|+++|+||+|||||++++....... ..+..  -+.+..+.-++...-+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEEC
Confidence            68999999999999999988654211 11221  233333445677778888888

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=7.8e-05  Score=67.66  Aligned_cols=49  Identities=29%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             cccceeEEEeecccccchhh---------hHHHHHHhhhccCCCceEEEeecccchhh
Q psy15625        133 RGAVGALLVYDIAKHLTYEN---------VERWLRELRDHADQNIVIMLVGNKSDLRH  181 (223)
Q Consensus       133 ~~~~~~~~~~d~~~~~~~~~---------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  181 (223)
                      +..++|++.+++++-.+...         ++.=+.++.....-..|+.+++||.|+..
T Consensus       213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence            44778888888775433322         23334555555666899999999999854

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.71  E-value=3.3e-05  Score=52.23  Aligned_cols=22  Identities=27%  Similarity=0.554  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+|.|+|||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

...

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.69  E-value=0.00081  Score=53.36  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.+|.|.-|||||||+|++...
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4678899999999999999865

>KOG0466|consensus

Probab=97.68  E-value=6.5e-05  Score=57.85  Aligned_cols=55  Identities=20%  Similarity=0.259  Sum_probs=39.7

Q ss_pred             ceEEEeecccchhhccCC--ChHHHHHHHHH---cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAV--PADEAKTFAER---NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +-++++-||+|+..+.+.  ..+++..|...   .+.+++++||.-.+|++-+.++|+..
T Consensus       180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkk  239 (466)
T KOG0466|consen  180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK  239 (466)
T ss_pred             ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhc
Confidence            457888999999753322  12344444432   36789999999999999999998753

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.65  E-value=0.0018  Score=52.54  Aligned_cols=24  Identities=33%  Similarity=0.660  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..+|+|+|++||||||++.+|...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~  264 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQ  264 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Confidence            468999999999999999999753

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.63  E-value=0.00012  Score=41.89  Aligned_cols=44  Identities=23%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             ccceeEEEeecccc--cchhhhHHHHHHhhhccCCCceEEEeecccc
Q psy15625        134 GAVGALLVYDIAKH--LTYENVERWLRELRDHADQNIVIMLVGNKSD  178 (223)
Q Consensus       134 ~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  178 (223)
                      -.+++++++|++..  .+.+.....+..++.... ++|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            36789999999976  445666667777766654 799999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.61  E-value=0.0067  Score=45.36  Aligned_cols=93  Identities=23%  Similarity=0.149  Sum_probs=56.3

Q ss_pred             CCcEEEEEEeCCC--ccc-HHHHHHHHHHHHHhc-CCceeEEEeCCCc----cccccccccceeEEEeecccc--cchhh
Q psy15625         83 GAVGALLVYDIAK--HLT-YENVERWLRELRDHA-DQNIVIMLVGPPS----LLRRYYRGAVGALLVYDIAKH--LTYEN  152 (223)
Q Consensus        83 ~~~~~i~v~d~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~--~~~~~  152 (223)
                      ..+.=++|.-...  .+. +=....|++.+.++- .+.....++++..    ..+.....+|.++.|.|++..  .+...
T Consensus        96 ~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~vD~vivVvDpS~~sl~taer  175 (255)
T COG3640          96 NGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEGVDLVIVVVDPSYKSLRTAER  175 (255)
T ss_pred             cCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhccccccCCCEEEEEeCCcHHHHHHHHH
Confidence            3344455554443  222 112344555555543 3346666666654    456777899999999999855  44455


Q ss_pred             hHHHHHHhhhccCCCceEEEeecccchh
Q psy15625        153 VERWLRELRDHADQNIVIMLVGNKSDLR  180 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~  180 (223)
                      +++..+.+.     =+++.+|+||.|-.
T Consensus       176 i~~L~~elg-----~k~i~~V~NKv~e~  198 (255)
T COG3640         176 IKELAEELG-----IKRIFVVLNKVDEE  198 (255)
T ss_pred             HHHHHHHhC-----CceEEEEEeeccch
Confidence            555554443     26899999999953

>KOG3929|consensus

Probab=97.59  E-value=2.3e-05  Score=58.85  Aligned_cols=185  Identities=17%  Similarity=0.191  Sum_probs=98.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe--EEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK--TIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ......|++.|..+.  ||+|++.....-... .++...+|....- ..+.  .--.++|+.+|......+..-.++.-.
T Consensus        42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~-~ptlaLEYtygRR-~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~  117 (363)
T KOG3929|consen   42 EKFEFFIGSKGNGGK--TTIILRCFDRDEPPK-PPTLALEYTYGRR-AKGHNPKDIANFWELGGGTSLLDLLSVPITGDT  117 (363)
T ss_pred             ccceeEEEEecCCce--eEeehhhcCcccCCC-CCceeeeeehhhh-ccCCCchhHHHHHHhcCCccHHHHhcCcccccc
Confidence            344677888886654  899988876543222 2333333322221 2222  223578999986655444443333322


Q ss_pred             ----EEEEEEeCCCccc-HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH--
Q psy15625         86 ----GALLVYDIAKHLT-YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR--  158 (223)
Q Consensus        86 ----~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--  158 (223)
                          .+|++.|++.++. +..++..+..++.+.+...-                       .+.......  .+....  
T Consensus       118 l~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~-----------------------~~~k~~~~L--~E~mrqR~  172 (363)
T KOG3929|consen  118 LRTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIM-----------------------KLGKTNAKL--VEEMRQRI  172 (363)
T ss_pred             hhhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhhcCHHH--HHHHHHHH
Confidence                5688999999876 66666666666654432100                       000000000  001111  


Q ss_pred             ---------HhhhccCCCceEEEeecccchhh-----ccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        159 ---------ELRDHADQNIVIMLVGNKSDLRH-----LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       159 ---------~~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                               ..+...+..+|++||+.|.|.-.     .+.....-++.++..+|...+..|++-..-.+.+.+.+..
T Consensus       173 ~~rvgqd~~d~e~~dP~P~PV~IVgsKYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~H  249 (363)
T KOG3929|consen  173 WNRVGQDHPDHELIDPFPVPVVIVGSKYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINH  249 (363)
T ss_pred             HHhcccCCCchhhcCCCCCceEEeccchhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHH
Confidence                     11222344789999999999742     1222233455666677777777777765555555554443

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.58  E-value=7.9e-05  Score=43.69  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      ..+|.|+.|+|||||+.++...-+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc
Confidence            488999999999999999876544

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.0019  Score=54.30  Aligned_cols=24  Identities=21%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.|+|+|++|+||||++.+|...
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~  373 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQR  373 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998764

>PRK08118 topology modulation protein; Reviewed

Probab=97.56  E-value=7e-05  Score=53.78  Aligned_cols=22  Identities=41%  Similarity=0.745  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ||+|+|++|||||||.+.|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999865

>PRK07261 topology modulation protein; Provisional

Probab=97.55  E-value=7.5e-05  Score=53.86  Aligned_cols=22  Identities=41%  Similarity=0.739  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+|+|++|+|||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.50  E-value=9.3e-05  Score=53.61  Aligned_cols=22  Identities=27%  Similarity=0.764  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ||+|+|+|||||||+.++|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999876

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.49  E-value=0.00012  Score=44.32  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~   35 (223)
                      |++.|.+|+||||+.+++...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998653

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.48  E-value=9e-05  Score=55.66  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -|+++|++|||||||++.+.+-..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            488999999999999999987543

>KOG0085|consensus

Probab=97.48  E-value=5.3e-05  Score=56.05  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~   32 (223)
                      ..+|.+++|...+||||++..+.
T Consensus        38 relkllllgtgesgkstfikqmr   60 (359)
T KOG0085|consen   38 RELKLLLLGTGESGKSTFIKQMR   60 (359)
T ss_pred             hhheeeeecCCCcchhhHHHHHH
Confidence            36899999999999999998864

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.44  E-value=0.00032  Score=57.44  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=35.7

Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      ....+.++|++|+...+..|..++.+++++++|+++++.+
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~yd  273 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYD  273 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGG
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchh
Confidence            5568899999999999999999999999999999998643

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.44  E-value=0.00011  Score=51.14  Aligned_cols=21  Identities=38%  Similarity=0.741  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+++|+|||||||+.+.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999753

...

>PRK10867 signal recognition particle protein; Provisional

Probab=97.44  E-value=0.0022  Score=52.94  Aligned_cols=24  Identities=17%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ++..|+++|++|+||||++.+|..
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            356799999999999998888765

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.42  E-value=0.0001  Score=52.68  Aligned_cols=22  Identities=23%  Similarity=0.597  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.41  E-value=0.00089  Score=51.99  Aligned_cols=85  Identities=18%  Similarity=0.129  Sum_probs=58.3

Q ss_pred             cccceeEEEeecccc-cchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCC
Q psy15625        133 RGAVGALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTN  211 (223)
Q Consensus       133 ~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  211 (223)
                      .+.|-+++++.+..+ .+...+.+++-..+.   .++.-+|++||+|+.+......++........|.+++.+|++++.+
T Consensus        78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~  154 (301)
T COG1162          78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDG  154 (301)
T ss_pred             cccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCccc
Confidence            345556666655555 444444455544444   3566677799999986444333456667778899999999999999


Q ss_pred             HHHHHHHHH
Q psy15625        212 VETAFQNIL  220 (223)
Q Consensus       212 i~~~~~~i~  220 (223)
                      ++++.+.+.
T Consensus       155 ~~~l~~~l~  163 (301)
T COG1162         155 LEELAELLA  163 (301)
T ss_pred             HHHHHHHhc
Confidence            999988764

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.41  E-value=0.0023  Score=51.72  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=22.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .-.|+++|++||||||-+-+|-....
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~  228 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYV  228 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            45699999999999999999876554

>KOG0459|consensus

Probab=97.40  E-value=0.0002  Score=57.21  Aligned_cols=86  Identities=19%  Similarity=0.101  Sum_probs=52.0

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccc--------------c---ccc------------ccceeeeEEEEEEEcCeE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------------L---ESK------------STIGVEFATRSIQVDQKT   59 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--------------~---~~~------------~~~~~~~~~~~~~~~~~~   59 (223)
                      ...+++.|+|.-.+||||+-..+....-.              +   ..+            ..-+.+.....-.+.-..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            34689999999999999987665431000              0   000            000112222222223333


Q ss_pred             EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC
Q psy15625         60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA   94 (223)
Q Consensus        60 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   94 (223)
                      ..+.+.|.||+..|.+....-..++|..++|.+..
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar  191 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISAR  191 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhh
Confidence            47899999999888776666667777777777653

>KOG2423|consensus

Probab=97.39  E-value=8.3e-05  Score=59.22  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=0.0

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG   69 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G   69 (223)
                      ...+-+.|+++|.||+||||+||.|...++-...+-.-+    ++.+++----..+-++|+||
T Consensus       303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE----TKVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE----TKVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc----chHHHHHHHHhceeEecCCC

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.38  E-value=0.00015  Score=50.06  Aligned_cols=25  Identities=32%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -.++|+|+.|+|||||++.+.+...
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CEEEEEccCCCccccceeeeccccc
Confidence            3689999999999999999987653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.37  E-value=0.00073  Score=46.34  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.|++.|+.|+|||||++.+....
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            358999999999999999998864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.36  E-value=0.00015  Score=54.13  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -++|+|++|||||||++-+-+-..
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccC
Confidence            489999999999999999876443

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.36  E-value=0.00012  Score=52.46  Aligned_cols=24  Identities=42%  Similarity=0.702  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-+++.|++|||||||+++|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            347899999999999999999876

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=97.34  E-value=0.002  Score=48.22  Aligned_cols=172  Identities=11%  Similarity=0.100  Sum_probs=93.7

Q ss_pred             EcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc--CCcEEEEEEeCC
Q psy15625         17 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR--GAVGALLVYDIA   94 (223)
Q Consensus        17 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~   94 (223)
                      =...|+||||++-.|...-....                    -++.++|.........-+....+  ..+..+.|++..
T Consensus         8 s~KGGaGKTT~~~~LAs~la~~G--------------------~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~   67 (231)
T PF07015_consen    8 SSKGGAGKTTAAMALASELAARG--------------------ARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD   67 (231)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHCC--------------------CeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc
Confidence            35678999999999876543111                    15577887665443322121111  223334455543


Q ss_pred             CcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccc----cccccceeEEEeecccccc--hhhhHHHHHHhhhccCCCc
Q psy15625         95 KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR----YYRGAVGALLVYDIAKHLT--YENVERWLRELRDHADQNI  168 (223)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~  168 (223)
                      .   ...++..++....   ...++.++++++....    ....+|.++..+-.+....  ....-+|+..+.......+
T Consensus        68 e---~~~l~~~~e~a~~---~~~d~VlvDleG~as~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~i  141 (231)
T PF07015_consen   68 E---LTILEDAYEAAEA---SGFDFVLVDLEGGASELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDI  141 (231)
T ss_pred             c---hhhHHHHHHHHHh---cCCCEEEEeCCCCCchhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            3   3333433333322   2356777777655433    3358999999887774422  2333455666655556689


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQ  217 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  217 (223)
                      |.-|+.|++.-.. .........++..  +++++.+.-....-..++|.
T Consensus       142 p~~Vl~Tr~~~~~-~~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  142 PAAVLFTRVPAAR-LTRAQRIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             CeeEEEecCCcch-hhHHHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            9999999997431 1111112223222  46777766665555555544

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.34  E-value=0.00024  Score=52.27  Aligned_cols=24  Identities=50%  Similarity=0.582  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++++|++|||||||++.+.+-+.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            689999999999999999976543

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.34  E-value=0.0015  Score=55.22  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -+++.||+|+||||.++.|....
T Consensus        47 iLlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            35678999999999999998754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.33  E-value=0.002  Score=53.22  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.++|+|++||||||++.+|...
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~  244 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAAR  244 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999888654

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.33  E-value=0.00018  Score=50.93  Aligned_cols=20  Identities=25%  Similarity=0.536  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~   32 (223)
                      +|++.|.||+||||+.++|.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            79999999999999999997

>PRK01889 GTPase RsgA; Reviewed

Probab=97.33  E-value=0.00027  Score=57.02  Aligned_cols=25  Identities=44%  Similarity=0.658  Sum_probs=22.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -+++++|.+|+|||||+|.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4799999999999999999997544

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.32  E-value=0.00019  Score=48.83  Aligned_cols=21  Identities=19%  Similarity=0.427  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999876

...

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.30  E-value=0.00027  Score=52.67  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=23.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .....|+|.|++|||||||.+.|...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999875

>TIGR00235 udk uridine kinase

Probab=97.30  E-value=0.0003  Score=52.35  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=22.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ++..-|+|+|++|||||||++.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34577999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.28  E-value=0.0038  Score=50.11  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+|.|.-|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            678899999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG1970|consensus

Probab=97.27  E-value=0.0012  Score=54.97  Aligned_cols=83  Identities=16%  Similarity=0.129  Sum_probs=41.7

Q ss_pred             eEEEeecccccchhhhHHHHHHhhhccC-CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHH
Q psy15625        138 ALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAF  216 (223)
Q Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  216 (223)
                      ++++-|........+.+.+.+.+..+.. ...|+|++++-+-..+.......-...+....++..+........-+++.+
T Consensus       197 liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L  276 (634)
T KOG1970|consen  197 LILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFL  276 (634)
T ss_pred             EEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHH
Confidence            4555555555444343344444433332 357888888777654322111222223334556666666655555555555


Q ss_pred             HHHH
Q psy15625        217 QNIL  220 (223)
Q Consensus       217 ~~i~  220 (223)
                      ..|+
T Consensus       277 ~ric  280 (634)
T KOG1970|consen  277 KRIC  280 (634)
T ss_pred             HHHH
Confidence            5544

>PRK06217 hypothetical protein; Validated

Probab=97.26  E-value=0.00026  Score=51.61  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -+|+|+|.+||||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999865

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.24  E-value=0.016  Score=47.00  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.++++|+.||||||++.++...
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~  229 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQ  229 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999754

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.23  E-value=0.00033  Score=48.06  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFN   37 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~   37 (223)
                      -.++++|++|+||||+++.+......
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.21  E-value=0.00031  Score=51.36  Aligned_cols=22  Identities=36%  Similarity=0.635  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++|+|++|+|||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999664

>PRK03839 putative kinase; Provisional

Probab=97.21  E-value=0.00032  Score=50.99  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+++|.|||||||+.++|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999765

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.21  E-value=0.00033  Score=48.68  Aligned_cols=24  Identities=21%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .|+|+|+.|+|||||++.|.+.-.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            589999999999999999987654

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.21  E-value=0.00032  Score=48.63  Aligned_cols=21  Identities=57%  Similarity=0.858  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14530 adenylate kinase; Provisional

Probab=97.20  E-value=0.00033  Score=52.49  Aligned_cols=22  Identities=27%  Similarity=0.625  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+|+|+|||||||+.+.|...
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999653

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.19  E-value=0.00033  Score=46.02  Aligned_cols=21  Identities=38%  Similarity=0.703  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~   32 (223)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            458999999999999999985

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.19  E-value=0.00032  Score=50.87  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998775

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.19  E-value=0.00035  Score=47.73  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~   35 (223)
                      |++.|+||+|||++++.+....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998753

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.18  E-value=0.00044  Score=49.61  Aligned_cols=24  Identities=42%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++|+|++|+|||||+|-+.+=..
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhccC
Confidence            689999999999999999977544

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.18  E-value=0.0049  Score=39.33  Aligned_cols=68  Identities=18%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc-chhhhcCCcEEEEEEe
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYD   92 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~~i~v~d   92 (223)
                      +++.|.+|+||||+...+...-..... .       .  ..++    .+.++|+++....... .......++.++++.+
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~-~-------v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK-R-------V--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC-e-------E--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            678899999999999988765432111 1       1  1112    6788999985432221 1345566777777666


Q ss_pred             CCC
Q psy15625         93 IAK   95 (223)
Q Consensus        93 ~~~   95 (223)
                      ...
T Consensus        68 ~~~   70 (99)
T cd01983          68 PEA   70 (99)
T ss_pred             Cch
Confidence            543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.17  E-value=0.00062  Score=50.64  Aligned_cols=25  Identities=40%  Similarity=0.646  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ..-|+|+|++|||||||+++|....
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~~~   37 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRERK   37 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhcC
Confidence            4568899999999999999997643

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.17  E-value=0.00034  Score=51.67  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~   35 (223)
                      |+|.|++|||||||.+.|.+..
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999997753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>KOG3347|consensus

Probab=97.16  E-value=0.00028  Score=48.70  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=22.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ....+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            4567899999999999999999974

>TIGR00959 ffh signal recognition particle protein

Probab=97.15  E-value=0.0039  Score=51.47  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +..++++|++|+||||++-.|...
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~~  122 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAYY  122 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHH
Confidence            567999999999999998887654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.14  E-value=0.00056  Score=49.16  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ..-++|+|.+|+|||||++++....
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHH
Confidence            3468999999999999999998654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.00038  Score=51.89  Aligned_cols=21  Identities=48%  Similarity=0.719  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      .|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999977

>PRK10646 ADP-binding protein; Provisional

Probab=97.13  E-value=0.0028  Score=44.53  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -|++-|.-|+|||||.+.+...-
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48899999999999999998764

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.13  E-value=0.00045  Score=50.55  Aligned_cols=24  Identities=25%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.++++|++|+|||||++.+.+.-
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            469999999999999999998753

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.12  E-value=0.00044  Score=50.06  Aligned_cols=21  Identities=43%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~   32 (223)
                      -.++++|+.|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            478999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.12  E-value=0.00045  Score=50.50  Aligned_cols=24  Identities=17%  Similarity=0.290  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-|+|+|++|||||||+++|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            458999999999999999998753

>PRK13949 shikimate kinase; Provisional

Probab=97.12  E-value=0.00047  Score=49.58  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+|+|++|+||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988764

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.11  E-value=0.0004  Score=52.98  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=30.2

Q ss_pred             cccccceeEEEeecccccchhhhHHHHHHhhhcc-CCCceEEEeecccch
Q psy15625        131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQNIVIMLVGNKSDL  179 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl  179 (223)
                      .+..--.+++...++..-+.......+..+.... ..+.-++++..-.++
T Consensus       152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~  201 (258)
T COG1120         152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL  201 (258)
T ss_pred             HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            3344455677777777777766666666665555 335677777655544

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.11  E-value=0.00044  Score=50.08  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      --.++++|+.|+|||||++.+.+..
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3478999999999999999998764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.11  E-value=0.00039  Score=51.16  Aligned_cols=22  Identities=50%  Similarity=0.670  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.+++|++|||||||++.+.+-
T Consensus        35 VTAlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHHhh
Confidence            3689999999999999998654

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.10  E-value=0.00043  Score=50.24  Aligned_cols=23  Identities=39%  Similarity=0.667  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .|+|+|++|||||||++.|.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            48999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.10  E-value=0.00042  Score=50.56  Aligned_cols=23  Identities=17%  Similarity=0.423  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.|+++|++||||||+++++...
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~   26 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEK   26 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999743

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.09  E-value=0.00047  Score=51.68  Aligned_cols=23  Identities=39%  Similarity=0.557  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            68999999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.07  E-value=0.00046  Score=51.88  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~   35 (223)
                      |+|.|++|||||||++.|.+.-
T Consensus         2 igI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998643

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK08233 hypothetical protein; Provisional

Probab=97.07  E-value=0.00058  Score=49.56  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..-|+|.|.+|||||||.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            367899999999999999999865

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.06  E-value=0.00052  Score=51.90  Aligned_cols=27  Identities=33%  Similarity=0.556  Sum_probs=23.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +.+++++|+|++|||||+|+..++...
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            346899999999999999999988653

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.06  E-value=0.00062  Score=51.51  Aligned_cols=29  Identities=24%  Similarity=0.115  Sum_probs=24.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      ..+..-|+|.|++|+|||||++.+.+...
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35678899999999999999999987543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.00046  Score=54.75  Aligned_cols=23  Identities=52%  Similarity=0.641  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      ++++|++|||||||++.+.+-.-
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999987543

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.06  E-value=0.00054  Score=50.25  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.06  E-value=0.00053  Score=51.13  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.06  E-value=0.00078  Score=50.51  Aligned_cols=24  Identities=38%  Similarity=0.479  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      +|+++|..|+|||||++-+.+-..
T Consensus        55 ~vGiiG~NGaGKSTLlkliaGi~~   78 (249)
T COG1134          55 RVGIIGHNGAGKSTLLKLIAGIYK   78 (249)
T ss_pred             EEEEECCCCCcHHHHHHHHhCccC
Confidence            799999999999999999987543

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.05  E-value=0.0011  Score=44.80  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      --|++-|+-|+|||||.+.+....
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            458999999999999999998754

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.05  E-value=0.00054  Score=51.32  Aligned_cols=23  Identities=43%  Similarity=0.595  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.04  E-value=0.00056  Score=50.80  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.04  E-value=0.00057  Score=51.09  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.03  E-value=0.00058  Score=51.86  Aligned_cols=23  Identities=39%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.02  E-value=0.00062  Score=50.57  Aligned_cols=23  Identities=43%  Similarity=0.563  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|+.|+|||||++.+.+..
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.02  E-value=0.00054  Score=51.11  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04040 adenylate kinase; Provisional

Probab=97.02  E-value=0.00067  Score=49.68  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..|+|+|.||+||||+.+.+...
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~   25 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEK   25 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.02  E-value=0.00062  Score=50.88  Aligned_cols=23  Identities=48%  Similarity=0.678  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.01  E-value=0.00061  Score=50.36  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~   35 (223)
                      |+|+|++|+||||+++.+.+..
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.00  E-value=0.00067  Score=48.07  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .|+++|++|+|||||++.+..-
T Consensus        31 ~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhc
Confidence            6899999999999999998754

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.00  E-value=0.0015  Score=47.12  Aligned_cols=44  Identities=27%  Similarity=0.127  Sum_probs=28.8

Q ss_pred             ceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhh
Q psy15625        136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH  181 (223)
Q Consensus       136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~  181 (223)
                      |.++++.|++.+.+..+- .....+. ....++|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~~-~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRCP-QVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCCH-HHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            678999999987555431 2222211 1223689999999999854

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.00  E-value=0.00065  Score=51.03  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998753

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.00  E-value=0.00066  Score=50.61  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14531 adenylate kinase; Provisional

Probab=97.00  E-value=0.0007  Score=49.38  Aligned_cols=23  Identities=22%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+|+++|+|||||||+.++|...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998654

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.99  E-value=0.00068  Score=49.95  Aligned_cols=23  Identities=30%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998864

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.99  E-value=0.00066  Score=50.99  Aligned_cols=23  Identities=48%  Similarity=0.596  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.99  E-value=0.00067  Score=50.64  Aligned_cols=23  Identities=52%  Similarity=0.632  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.99  E-value=0.00071  Score=49.08  Aligned_cols=23  Identities=48%  Similarity=0.598  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.99  E-value=0.00068  Score=50.66  Aligned_cols=23  Identities=39%  Similarity=0.561  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.98  E-value=0.00065  Score=47.08  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .|+++|++|+|||+|++.+....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999987643

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.98  E-value=0.00071  Score=51.10  Aligned_cols=23  Identities=48%  Similarity=0.637  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999998864

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.98  E-value=0.00072  Score=47.29  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            57899999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-80
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-79
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-78
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		8e-77
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-76
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-76
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-75
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-61
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-60
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		7e-59
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		9e-58
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		7e-57
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-39
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-39
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-38
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-38
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-38
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-38
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-38
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-38
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		4e-38
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		5e-38
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-38
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-38
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-37
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-37
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-37
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-37
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		6e-37
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		6e-37
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-36
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-36
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		9e-36
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-35
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		5e-35
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		8e-35
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		7e-34
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-33
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-33
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		5e-32
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		6e-32
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		7e-32
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-31
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-31
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-31
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		5e-31
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		6e-31
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		6e-31
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		8e-31
2efc_B	181	Ara7-GdpATVPS9A Length = 181		9e-31
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-30
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-30
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-30
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-30
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-30
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-30
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-30
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-30
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-30
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-30
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		6e-30
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		7e-30
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-29
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-29
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-29
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-28
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-28
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-27
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		6e-27
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-26
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		3e-26
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-26
1vg1_A	185	Gdp-bound Rab7 Length = 185		4e-26
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		6e-26
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		7e-26
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		8e-26
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-25
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		3e-25
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-24
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-24
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-24
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-24
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-24
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-24
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		3e-24
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-24
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-24
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-24
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		8e-24
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-23
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-23
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-23
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		3e-23
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-23
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-23
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-23
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-23
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		6e-23
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-23
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-19
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		9e-19
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-18
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-18
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-18
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-18
1byu_A	216	Canine Gdp-Ran Length = 216		3e-18
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-18
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		4e-18
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		4e-18
2bku_A	177	Kap95p:rangtp Complex Length = 177		5e-18
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		8e-18
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-17
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-17
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-17
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-17
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		3e-17
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		3e-17
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-16
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		5e-16
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		9e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-15
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-14
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-14
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-14
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-14
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		8e-14
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-13
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		6e-13
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		6e-13
1mh1_A	186	Small G-Protein Length = 186		7e-13
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		7e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		7e-13
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-13
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		8e-13
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		9e-13
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-12
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-12
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-12
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-12
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-12
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-12
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-12
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-12
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-12
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-12
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-12
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		5e-12
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		6e-12
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		7e-12
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		7e-12
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		8e-12
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-11
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-11
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-11
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-11
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-11
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-11
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-11
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-11
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-11
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-11
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-11
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-11
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-11
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-11
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-11
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-11
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		4e-11
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-11
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		6e-11
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-11
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		6e-11
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-10
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-10
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-10
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-10
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-10
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-10
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		3e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		4e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		4e-10
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		4e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		4e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		5e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		5e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		5e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		5e-10
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		5e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		5e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		5e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		5e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		6e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		6e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		6e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		6e-10
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		6e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		7e-10
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		7e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		7e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		8e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		8e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		9e-10
2kb0_A	178	Cdc42(T35a) Length = 178		2e-09
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-09
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-09
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		3e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		4e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		5e-09
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		7e-09
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		9e-09
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-08
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-08
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-08
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-08
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		6e-08
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		8e-08
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-07
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-07
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-07
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-07
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-07
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		3e-07
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-07
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		3e-07
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-07
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-07
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-07
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-07
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-07
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		3e-07
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-07
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-07
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		4e-07
1wq1_R	166	Ras-Rasgap Complex Length = 166		4e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		4e-07
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-07
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-07
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-07
6q21_A	171	Molecular Switch For Signal Transduction: Structura		4e-07
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		4e-07
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-07
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		5e-07
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		8e-07
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		9e-07
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-06
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-06
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-06
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-06
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-06
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-06
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-06
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-06
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-06
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-06
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-06
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-06
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-06
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-06
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		4e-06
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		4e-06
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-06
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		4e-06
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		4e-06
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		8e-06
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-06
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		5e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-06
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		5e-06
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		8e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		8e-06
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		8e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		9e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-05
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-05
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-04
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		3e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		3e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		4e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		4e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		6e-04
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		7e-04
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		7e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		7e-04
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		7e-04

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  294 bits (752), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 160/221 (72%), Gaps = 51/221 (23%)
Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 19  MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78
Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 79  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 138
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 139 LVGNKSDLR--------------------------------------------------- 147
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  291 bits (744), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/221 (70%), Positives = 159/221 (71%), Gaps = 51/221 (23%)
Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 19  MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78
Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAG ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIM
Sbjct: 79  KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 138
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 139 LVGNKSDLR--------------------------------------------------- 147
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  289 bits (739), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/221 (69%), Positives = 158/221 (71%), Gaps = 51/221 (23%)
Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 1   MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAG ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVI 
Sbjct: 61  KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIX 120
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG  S LR                                                   
Sbjct: 121 LVGNKSDLR--------------------------------------------------- 129
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 130 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  283 bits (723), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 151/216 (69%), Positives = 154/216 (71%), Gaps = 51/216 (23%)
Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
           DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIW
Sbjct: 3   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 66  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
           DTAG ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIMLVG  
Sbjct: 63  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 122
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
           S LR                                                   HLRAV
Sbjct: 123 SDLR---------------------------------------------------HLRAV 131
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           P DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 132 PTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 167

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  281 bits (719), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/214 (70%), Positives = 153/214 (71%), Gaps = 51/214 (23%)
Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIMLVG  S 
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
           LR                                                   HLRAVP 
Sbjct: 137 LR---------------------------------------------------HLRAVPT 145
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 146 DEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 179

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  281 bits (719), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/214 (70%), Positives = 154/214 (71%), Gaps = 51/214 (23%)
Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQERYR ITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIMLVG  S 
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
           LR                                                   HLRAVP 
Sbjct: 122 LR---------------------------------------------------HLRAVPT 130
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 131 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 164

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  277 bits (709), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/215 (69%), Positives = 152/215 (70%), Gaps = 51/215 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAG ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVI LVG  S
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
            LR                                                   HLRAVP
Sbjct: 121 DLR---------------------------------------------------HLRAVP 129
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
            DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 130 TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 164

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 122/216 (56%), Positives = 145/216 (67%), Gaps = 52/216 (24%)
Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQI 64
           D YDYLFK+VLIGDSGVGKSNLLSRFTR+EFNLESKSTIGVEFAT+SIQ+ + K IKAQI
Sbjct: 2   DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQERYRAITSAYYRGAVGALLVYDI K  ++EN+E+WL+ELRD+AD NIVI+LVG 
Sbjct: 62  WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
            S                                                   DL+HLR 
Sbjct: 122 KS---------------------------------------------------DLKHLRV 130
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +  ++A  +A++  L+FIETSAL++TNVE AF  +L
Sbjct: 131 INDNDATQYAKKEKLAFIETSALEATNVELAFHQLL 166

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/214 (54%), Positives = 142/214 (66%), Gaps = 51/214 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           +YD LFK+VLIGDSGVGKSNLLSRFT+NEFN++SKSTIGVEFATR+++++ K IKAQIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQERYRAITSAYYRGAVGAL+VYDI+K  +YEN   WL ELR++AD N+ + L+G   
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIG--- 125
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                           NKSDL HLRAVP
Sbjct: 126 ------------------------------------------------NKSDLAHLRAVP 137
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            +E+KTFA+ N L F ETSAL+S NV+ AF+ ++
Sbjct: 138 TEESKTFAQENQLLFTETSALNSENVDKAFEELI 171

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  223 bits (568), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 117/216 (54%), Positives = 138/216 (63%), Gaps = 51/216 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           +YDYLFK+VLIGDSGVGKSNLLSRFT +EFN+ESKSTIGVEFATR+I+V+ K IKAQIWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAG ERYRAITSAYYRGAVGAL+VYDI+K  +YEN   WL ELR++AD N+ + L+G  S
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                              DL HLRAVP
Sbjct: 126 ---------------------------------------------------DLAHLRAVP 134
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
            DEAK FA  N + F ETSAL+S NV+ AF+ ++ A
Sbjct: 135 TDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVA 170

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  219 bits (558), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 139/215 (64%), Gaps = 51/215 (23%)
Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
           ++Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ +    +KAQIW
Sbjct: 20  EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 66  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
           DTAG ERYRAITSAYYRGAVGALLV+D+ KH TY  VERWL+EL DHA+  IV+MLVG  
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG-- 137
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
                                                            NKSDL   R V
Sbjct: 138 -------------------------------------------------NKSDLSQAREV 148
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           P +EA+ FAE N L F+ETSALDSTNVE AF+ +L
Sbjct: 149 PTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  216 bits (551), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 139/219 (63%), Gaps = 51/219 (23%)
Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G+  ++Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ +    +K
Sbjct: 1   GSHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 60
Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
           AQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH TY  VERWL+EL DHA+  IV+ML
Sbjct: 61  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 120
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
           VG  S                                                   DL  
Sbjct: 121 VGNKS---------------------------------------------------DLSQ 129
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            R VP +EA+ FAE N L F+ETSALDSTNVE AF+ +L
Sbjct: 130 AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 168

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 51/213 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTIK QIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRGA G ++VYD+    +Y NV++WL+E+  +A +N+  +LVG   
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG--- 121
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                           NKSDL   + V 
Sbjct: 122 ------------------------------------------------NKSDLTTKKVVD 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
              AK FA+   + F+ETSA ++TNVE AF  +
Sbjct: 134 NTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 51/213 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTIK QIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRGA G ++VYD+    +Y NV++WL+E+  +A +N+  +LVG   
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG--- 121
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                           NKSDL   + V 
Sbjct: 122 ------------------------------------------------NKSDLTTKKVVD 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
              AK FA+   + F+ETSA ++TNVE AF  +
Sbjct: 134 NTTAKEFADSLGIPFLETSAKNATNVEQAFMTM 166

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 119/219 (54%), Gaps = 51/219 (23%)
Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           M +   EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTI
Sbjct: 6   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A +N+  +
Sbjct: 66  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 125
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG                                                   NK DL 
Sbjct: 126 LVG---------------------------------------------------NKCDLT 134
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
             + V    AK FA+   + F+ETSA ++TNVE +F  +
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 111/211 (52%), Gaps = 51/211 (24%)
Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I +D K IK QIWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQE +R+IT +YYRGA GALLVYDI +  T+ ++  WL + R H++ N+VIML+G    
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIG---- 122
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                          NKSDL   R V  
Sbjct: 123 -----------------------------------------------NKSDLESRREVKK 135
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQN 218
           +E + FA  + L F+ETSA  ++NVE AF N
Sbjct: 136 EEGEAFAREHGLIFMETSAKTASNVEEAFIN 166

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 110/209 (52%), Gaps = 51/209 (24%)
Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V  + IK QIWDT
Sbjct: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQER+RA+T +YYRGA GAL+VYDI +  TY ++  WL + R+  + N VI+L+G    
Sbjct: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG---- 127
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                          NK+DL   R V  
Sbjct: 128 -----------------------------------------------NKADLEAQRDVTY 140
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAF 216
           +EAK FAE N L F+E SA    NVE AF
Sbjct: 141 EEAKQFAEENGLLFLEASAKTGENVEDAF 169

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  155 bits (391), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/216 (40%), Positives = 111/216 (51%), Gaps = 51/216 (23%)
Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           M T    Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V  + I
Sbjct: 20  MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 79
Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K QIWDTAGQ R+RA+T +YYRGA GAL+VYDI +  TY ++  WL + R+  + N VI+
Sbjct: 80  KLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 139
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           L+G                                                   NK+DL 
Sbjct: 140 LIG---------------------------------------------------NKADLE 148
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAF 216
             R V  +EAK FAE N L F+E SA    NVE AF
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 184

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 51/219 (23%)
Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           M +   EYDYLFK++LIGDSGVGK+ LL RF  + +     STIGV+F  R+I++D KTI
Sbjct: 6   MSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A +N+  +
Sbjct: 66  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 125
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           LVG                                                   NK DL 
Sbjct: 126 LVG---------------------------------------------------NKCDLT 134
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
             + V    AK FA+   + F+ETSA ++TNVE +F  +
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 117/213 (54%), Gaps = 51/213 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTIK QIWD
Sbjct: 21  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A +N+  +LVG   
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--- 137
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                           NK DL   + V 
Sbjct: 138 ------------------------------------------------NKCDLTTKKVVD 149
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
              AK FA+   + F+ETSA ++TNVE +F  +
Sbjct: 150 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 182

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 118/210 (56%), Gaps = 51/210 (24%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++++D KT+K QIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRG+ G ++VYD+    ++  V+ WL+E+  +A   ++ +LVG   
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                           +L+D                    R V 
Sbjct: 124 --------------------------------DLKDK-------------------RVVE 132
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAF 216
            D AK FA+ N + F+ETSALDSTNVE AF
Sbjct: 133 YDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 119/213 (55%), Gaps = 51/213 (23%)
Query: 4   REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ 63
           R  EYDYLFK++LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++++D KT+K Q
Sbjct: 14  RGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 73
Query: 64  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           IWDTAGQER+R ITS+YYRG+ G ++VYD+    ++  V+ WL+E+  +A   ++ +LVG
Sbjct: 74  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 133
Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183
                                              +L+D                    R
Sbjct: 134 NKC--------------------------------DLKDK-------------------R 142
Query: 184 AVPADEAKTFAERNNLSFIETSALDSTNVETAF 216
            V  D AK FA+ N + F+ETSALDSTNVE AF
Sbjct: 143 VVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 118/210 (56%), Gaps = 51/210 (24%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++++D KT+K QIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRG+ G ++VYD+    ++  V+ WL+E+  +A   ++ +LVG   
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                           +L+D                    R V 
Sbjct: 124 --------------------------------DLKDK-------------------RVVE 132
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAF 216
            D AK FA+ N + F+ETSALDSTNVE AF
Sbjct: 133 YDVAKEFADANKMPFLETSALDSTNVEDAF 162

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/213 (40%), Positives = 117/213 (54%), Gaps = 51/213 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTIK QIWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A +N+  +LVG   
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--- 118
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                           NK DL   + V 
Sbjct: 119 ------------------------------------------------NKCDLTTKKVVD 130
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
              AK FA+   + F+ETSA ++TNVE +F  +
Sbjct: 131 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/210 (40%), Positives = 116/210 (55%), Gaps = 51/210 (24%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTIK QIWD
Sbjct: 29  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A +N+  +LVG   
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--- 145
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                           NK DL   + V 
Sbjct: 146 ------------------------------------------------NKCDLTTKKVVD 157
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAF 216
              AK FA+   + F+ETSA ++TNVE +F
Sbjct: 158 YTTAKEFADSLGIPFLETSAKNATNVEQSF 187

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 118/213 (55%), Gaps = 51/213 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I ++ KT+K QIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRGA G ++VYD+    +++NV++W++E+  +A +N+  +LVG   
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVG--- 121
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                           NK DL   R V 
Sbjct: 122 ------------------------------------------------NKCDLVSKRVVT 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
           +DE +  A+ + + FIETSA ++ NVE AF  +
Sbjct: 134 SDEGRELADSHGIKFIETSAKNAYNVEQAFHTM 166

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 108/209 (51%), Gaps = 51/209 (24%)
Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D K IK QIWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QE +R+IT +YYRGA GALLVYDI +  T+ ++  WL + R H+  N+VIML+G      
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG------ 133
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                        NKSDL   R V  +E
Sbjct: 134 ---------------------------------------------NKSDLESRRDVKREE 148
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQN 218
            + FA  + L F+ETSA  + NVE AF N
Sbjct: 149 GEAFAREHGLIFMETSAKTACNVEEAFIN 177

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 116/213 (54%), Gaps = 51/213 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTIK QIWD
Sbjct: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A +N+  +LVG   
Sbjct: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI-- 121
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                            K DL   + V 
Sbjct: 122 -------------------------------------------------KCDLTTKKVVD 132
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
              AK FA+   + F+ETSA ++TNVE +F  +
Sbjct: 133 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 165

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 116/213 (54%), Gaps = 51/213 (23%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYD LFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTIK QIWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A +N+  +LVG   
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--- 118
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                           NK DL   + V 
Sbjct: 119 ------------------------------------------------NKCDLTTKKVVD 130
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
              AK FA+   + F+ETSA ++TNVE +F  +
Sbjct: 131 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 163

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 107/208 (51%), Gaps = 51/208 (24%)
Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           D+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V  KT+K QIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R++T +YYRGA GALLVYDI    TY ++  WL + R  A  NIV++L G     
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG----- 137
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                         NK DL   R V   
Sbjct: 138 ----------------------------------------------NKKDLDPEREVTFL 151
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
           EA  FA+ N L F+ETSAL   NVE AF
Sbjct: 152 EASRFAQENELMFLETSALTGENVEEAF 179

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 109/215 (50%), Gaps = 51/215 (23%)
Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G   + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K +K
Sbjct: 1   GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60
Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
            QIWDTAGQER+R++T +YYRGA GALLVYDI    TY  +  WL + R  A QNIVI+L
Sbjct: 61  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
            G                                                   NK DL  
Sbjct: 121 CG---------------------------------------------------NKKDLDA 129
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAF 216
            R V   EA  FA+ N L F+ETSAL   NVE AF
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAF 164

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 118/221 (53%), Gaps = 52/221 (23%)
Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G  +++YD+LFK+VL+GD+ VGK+ ++ RF    F+    STIGV+F  +++++  K +K
Sbjct: 20  GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 79
Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
            QIWDTAGQER+R IT +YYR A GA+L YDI K  ++ +V  W+ ++R +A  NIV +L
Sbjct: 80  LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
           +G                                                   NKSDL  
Sbjct: 140 IG---------------------------------------------------NKSDLSE 148
Query: 182 LRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILT 221
           LR V   EA++ AE  + L  IETSA DS+NVE AF  + T
Sbjct: 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  146 bits (368), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 86/211 (40%), Positives = 108/211 (51%), Gaps = 51/211 (24%)
Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
           + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K +K QIW
Sbjct: 6   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 66  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
           DTAGQER+R++T +YYRGA GALLVYDI    TY  +  WL + R  A QNIVI+L G  
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG-- 123
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
                                                            NK DL   R V
Sbjct: 124 -------------------------------------------------NKKDLDADREV 134
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAF 216
              EA  FA+ N L F+ETSAL   +VE AF
Sbjct: 135 TFLEASRFAQENELMFLETSALTGEDVEEAF 165

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 111/209 (53%), Gaps = 51/209 (24%)
Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           YDYLFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  R+I++D K IK QIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQER+R IT+AYYRGA+G +LVYDI    +++N+  W+R + +HA  ++  M++G    
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG---- 120
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                          NK D+   R V  
Sbjct: 121 -----------------------------------------------NKCDVNDKRQVSK 133
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAF 216
           +  +  A    + F+ETSA  + NVE AF
Sbjct: 134 ERGEKLALDYGIKFMETSAKANINVENAF 162

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  144 bits (362), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 110/208 (52%), Gaps = 51/208 (24%)
Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           DYLFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  R+I++D K IK QIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R IT+AYYRGA+G +LVYDI    +++N+  W+R + +HA  ++  M++G     
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILG----- 118
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                         NK D+   R V  +
Sbjct: 119 ----------------------------------------------NKCDVNDKRQVSKE 132
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
             +  A    + F+ETSA  + NVE AF
Sbjct: 133 RGEKLALDYGIKFMETSAKANINVENAF 160

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 107/211 (50%), Gaps = 51/211 (24%)
Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
           + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K +K QIW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 66  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
           DTAG ER+R++T +YYRGA GALLVYDI    TY  +  WL + R  A QNIVI+L G  
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG-- 120
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
                                                            NK DL   R V
Sbjct: 121 -------------------------------------------------NKKDLDADREV 131
Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAF 216
              EA  FA+ N L F+ETSAL   +VE AF
Sbjct: 132 TFLEASRFAQENELMFLETSALTGEDVEEAF 162

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 80/207 (38%), Positives = 111/207 (53%), Gaps = 51/207 (24%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTIK QIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           +R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A +N+  +LVG         
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG--------- 111
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                                     NK DL   + V    AK 
Sbjct: 112 ------------------------------------------NKCDLTTKKVVDYTTAKE 129
Query: 193 FAERNNLSFIETSALDSTNVETAFQNI 219
           FA+   + F+ETSA ++TNVE +F  +
Sbjct: 130 FADSLGIPFLETSAKNATNVEQSFMTM 156

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 52/209 (24%)
Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           YD + K++LIGDSGVGKS LL RF  ++FN    +TIG++F  +++ ++ K +K Q+WDT
Sbjct: 17  YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQER+R IT+AYYRGA+G +LVYD+    T+ N+++W + + +HA+    ++LVG    
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG---- 132
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                          NKSD+   R V A
Sbjct: 133 -----------------------------------------------NKSDM-ETRVVTA 144
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAF 216
           D+ +  A+   + FIE+SA +  NV   F
Sbjct: 145 DQGEALAKELGIPFIESSAKNDDNVNEIF 173

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 109/208 (52%), Gaps = 52/208 (25%)
Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           D + K++LIGDSGVGKS LL RF  ++FN    +TIG++F  +++ ++ K +K QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R IT+AYYRGA+G +LVYDI    T+ N+++W + + +HA+    ++LVG     
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG----- 115
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                         NKSD+   R V AD
Sbjct: 116 ----------------------------------------------NKSDM-ETRVVTAD 128
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
           + +  A+   + FIE+SA +  NV   F
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 52/208 (25%)
Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           D + K++LIGDSGVGKS LL RF  ++FN    +TIG++F  +++ ++ K +K QIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R IT+AYYRGA G +LVYDI    T+ N+++W + + +HA+    ++LVG     
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG----- 115
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                         NKSD    R V AD
Sbjct: 116 ----------------------------------------------NKSD-XETRVVTAD 128
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
           + +  A+   + FIE+SA +  NV   F
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 113/218 (51%), Gaps = 52/218 (23%)
Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G+ ED YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + +K
Sbjct: 18  GSMED-YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK 76
Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
            QIWDTAGQER+R+IT +YYR A   +L YDI    ++  +  WLRE+  +A   ++ +L
Sbjct: 77  LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
           VG                                                   NK DL  
Sbjct: 137 VG---------------------------------------------------NKIDLAE 145
Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
            R V    A+ F+E  ++ ++ETSA +S NVE  F ++
Sbjct: 146 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 52/206 (25%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           + K++LIGDSGVGKS LL RF  ++FN    +TIG++F  +++ ++ K +K Q+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER+R IT+AYYRGA+G +LVYD+    T+ N+++W + + +HA+    ++LVG       
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG------- 119
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                                       NKSD+   R V AD+ 
Sbjct: 120 --------------------------------------------NKSDM-ETRVVTADQG 134
Query: 191 KTFAERNNLSFIETSALDSTNVETAF 216
           +  A+   + FIE+SA +  NV   F
Sbjct: 135 EALAKELGIPFIESSAKNDDNVNEIF 160

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 52/208 (25%)
Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           D + K++LIGDSGVGKS LL RF  ++FN    +TIG++F  +++ ++ K +K Q+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R IT+AYYRGA G +LVYD+    T+ N+++W + + +HA+    ++LVG     
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG----- 115
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                         NKSD    R V AD
Sbjct: 116 ----------------------------------------------NKSD-XETRVVTAD 128
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAF 216
           + +  A+   + FIE+SA +  NV   F
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIF 156

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/213 (35%), Positives = 111/213 (52%), Gaps = 52/213 (24%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           +YD+LFK+++IGDSGVGKS+LL RF  N F+    +TIGV+F  R+++++ + +K QIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R ITS YYRG  G ++VYD+    ++ NV+RWL E+  + D ++  +LVG   
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVG--- 120
Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                           NK+D    + V 
Sbjct: 121 ------------------------------------------------NKNDDPERKVVE 132
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
            ++A  FA +  +   ETSA ++ NVE  F  I
Sbjct: 133 TEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    ++   + W++EL+  A  NIVI L G        
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 119
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + RAV   EA+
Sbjct: 120 -------------------------------------------NKADLANKRAVDFQEAQ 136
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
           ++A+ N+L F+ETSA  S NV   F  I
Sbjct: 137 SYADDNSLLFMETSAKTSMNVNEIFMAI 164

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    ++   + W++EL+  A  NIVI L G        
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + RAV   EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
           ++A+ N+L F+ETSA  S NV   F  I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 106/208 (50%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    T+   + W++EL+  A  NIVI L G        
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG-------- 115
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   RAV   EA+
Sbjct: 116 -------------------------------------------NKADLASKRAVEFQEAQ 132
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +A+ N+L F+ETSA  + NV   F  I
Sbjct: 133 AYADDNSLLFMETSAKTAMNVNEIFMAI 160

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    ++   + W++EL+  A  NIVI L G        
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + RAV   EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
           ++A+ N+L F+ETSA  S NV   F  I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  130 bits (326), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    ++   + W++EL+  A  NIVI L G        
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + RAV   EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
           ++A+ N+L F+ETSA  S NV   F  I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 109/207 (52%), Gaps = 51/207 (24%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+VL+GD G GKS+L+ RF +++F    +STIG  F ++++ V+  T+K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           Y ++   YYRGA  A++V+D+    ++E  ++W++EL+   + N+V+ L G         
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG--------- 124
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                                     NKSDL   R V A++A+T
Sbjct: 125 ------------------------------------------NKSDLLDARKVTAEDAQT 142
Query: 193 FAERNNLSFIETSALDSTNVETAFQNI 219
           +A+ N L F+ETSA  +TNV+  F  I
Sbjct: 143 YAQENGLFFMETSAKTATNVKEIFYEI 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    ++   + W++EL+  A  NIVI L G        
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + RAV   EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
           ++A+ N+L F+ETSA  S NV   F  I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 107/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    ++   + W++EL+  A  NIVI L G        
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 119
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + RAV   EA+
Sbjct: 120 -------------------------------------------NKADLANKRAVDFQEAQ 136
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
           ++A+ N+L F ETSA  S NV   F  I
Sbjct: 137 SYADDNSLLFXETSAKTSXNVNEIFXAI 164

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KV L+GD+GVGKS+++ RF ++ F+     TIG  F T+++    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+                                                    SL   Y
Sbjct: 84  RFH---------------------------------------------------SLAPMY 92
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
           YRG+  A++VYDI K  ++  +++W++EL++H  +NIV+ + GNK DL  +R VP  +AK
Sbjct: 93  YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAK 152
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +AE      +ETSA ++ N+E  FQ I
Sbjct: 153 EYAESIGAIVVETSAKNAINIEELFQGI 180

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    ++   + W++EL+  A  NIVI L G        
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + RAV   EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
           ++A+ N+L F+ETSA  S NV   F  I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    ++   + W++EL+  A  NIVI L G        
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + RAV   EA+
Sbjct: 119 -------------------------------------------NKADLANKRAVDFQEAQ 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
           ++A+ N+L F+ETSA  S NV   F  I
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+S+ +D  T+K +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    T+   + W++EL+  A  +IVI L G        
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAG-------- 120
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + R V  +EA+
Sbjct: 121 -------------------------------------------NKADLANKRMVEYEEAQ 137
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +A+ N+L F+ETSA  + NV   F  I
Sbjct: 138 AYADDNSLLFMETSAKTAMNVNDLFLAI 165

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    ++   + W++EL+  A  NIVI L G        
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG-------- 117
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL + RAV   EA+
Sbjct: 118 -------------------------------------------NKADLANKRAVDFQEAQ 134
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
           ++A+ N+L F+ETSA  S NV   F  I
Sbjct: 135 SYADDNSLLFMETSAKTSMNVNEIFMAI 162

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 84/115 (73%)
Query: 14  VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73
           ++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTIK QIWDTAGQER+
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 74  RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           R ITS+YYRGA G ++VYD+    ++ NV++WL+E+  +A +N+  +LVG    L
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KV L+GD+GVGKS+++ RF  + F+     TIG  F T+++Q   +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+RA+   YYRG+  A++VYDI K  T+  ++ W+RELR H          GPPS     
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----------GPPS----- 110
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                               IV+ + GNK DL  +R V   +AK
Sbjct: 111 ------------------------------------IVVAIAGNKCDLTDVREVMERDAK 134
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +A+  +  F+ETSA ++ N+   F  I
Sbjct: 135 DYADSIHAIFVETSAKNAININELFIEI 162

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 105/208 (50%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    T+   + W++EL+  A  NIVI L G        
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG-------- 117
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   RAV   EA+
Sbjct: 118 -------------------------------------------NKADLASKRAVEFQEAQ 134
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +A+ N+L F+ETSA  + NV   F  I
Sbjct: 135 AYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 105/208 (50%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STI   F T+++ +D  T+K +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++   YYRGA  A++VYDI    T+   + W++EL+  A  NIVI L G        
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG-------- 117
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   RAV   EA+
Sbjct: 118 -------------------------------------------NKADLASKRAVEFQEAQ 134
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +A+ N+L F+ETSA  + NV   F  I
Sbjct: 135 AYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  126 bits (317), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 51/212 (24%)
Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           DY+FK++LIG+S VGK++ L R+  + F     ST+G++F  +++    K IK QIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQERYR IT+AYYRGA+G LL+YDIA   ++  V+ W  +++ ++  N  ++LVG     
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVG----- 134
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                         NK DL   R VPA+
Sbjct: 135 ----------------------------------------------NKCDLEDERVVPAE 148
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           + +  A+     F E SA ++ NV+  F+ ++
Sbjct: 149 DGRRLADDLGFEFFEASAKENINVKQVFERLV 180

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 108/219 (49%), Gaps = 52/219 (23%)
Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTI 60
           G+  D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + + VD   +
Sbjct: 1   GSGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV 60
Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K Q+WDTAGQER+R++T AYYR A   LL+YD+    +++N++ WL E+ ++A  ++ +M
Sbjct: 61  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM 120
Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
           L+G                                                   NK D  
Sbjct: 121 LLG---------------------------------------------------NKVDSA 129
Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
           H R V  ++ +  A+   L F+ETSA    NV+ AF  I
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 168

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 102/208 (49%), Gaps = 51/208 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KV L+GD+GVGKS+++ RF  + F+     TIG  F T+++Q   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+RA+   YYRG+  A++VYDI K  T+  ++ W+RELR H          GPPS     
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----------GPPS----- 111
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                               IV+ + GNK DL  +R V   +AK
Sbjct: 112 ------------------------------------IVVAIAGNKCDLTDVREVMERDAK 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +A+  +  F+ETSA ++ N+   F  I
Sbjct: 136 DYADSIHAIFVETSAKNAININELFIEI 163

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 51/215 (23%)
Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +++   +K +K QIWDT
Sbjct: 20  FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQERYR IT+AYYRGA+G +L+YDI    ++  V+ W  +++ ++  N  ++LVG    
Sbjct: 80  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG---- 135
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                          NK D+   R VP 
Sbjct: 136 -----------------------------------------------NKCDMEEERVVPT 148
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           ++ +  AE+    F E SA ++ +V  AF+ ++ A
Sbjct: 149 EKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 51/213 (23%)
Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  ++I  + K IK QIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQERYR IT+AYYRGA+G +L+YDI    ++  V+ W  +++ ++  N  ++LVG    
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG---- 117
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                          NK D+   R V +
Sbjct: 118 -----------------------------------------------NKCDMEDERVVSS 130
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +  +  A+     F E SA D+ NV+  F+ ++
Sbjct: 131 ERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 84/115 (73%)
Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           D+  +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++++  K I+ QIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           GQER+ +ITSAYYR A G +LVYDI K  T++++ +W++ +  +A ++  ++LVG
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K+++IG+SGVGKS+LL RFT + F+ E  +TIGV+F  ++I VD    K  IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN-IVIMLVG 123
           R+R +T +YYRGA G +LVYD+ +  T+  ++ WL EL  +  +N IV  LVG
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 49/208 (23%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           LFK++L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + ++VD   +  QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER+R++ + +YRG+   LL + +    +++N+  W +E   +AD       V  P     
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD-------VKEP----- 118
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                              ++   +++GNK+D++  R V  +EA
Sbjct: 119 -----------------------------------ESFPFVILGNKTDIKE-RQVSTEEA 142
Query: 191 KTFAERN-NLSFIETSALDSTNVETAFQ 217
           + + + N +  + ETSA DSTNV  AF+
Sbjct: 143 QAWCKDNGDYPYFETSAKDSTNVAAAFE 170

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 49/208 (23%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+L+GD GVGKS+L++R+  N+F+ ++  TIGVEF  R ++VD + +  QIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER++++ + +YRGA   LL + +    ++EN+  W +E   +AD       V  P     
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYAD-------VKDP----- 114
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                          +H  +                    +++GNK D +  R V  +EA
Sbjct: 115 ---------------EHFPF--------------------VVLGNKVD-KEDRQVTTEEA 138
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQ 217
           +T+  E  +  ++ETSA D TNV  AF+
Sbjct: 139 QTWCMENGDYPYLETSAKDDTNVTVAFE 166

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 51/213 (23%)
Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           +DY FK+++IG+S VGK++ L R+  + F     ST+G++F  ++I  + K IK QIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AG ERYR IT+AYYRGA G +L YDI    ++  V+ W  +++ ++  N  ++LVG    
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG---- 120
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                          NK D    R V +
Sbjct: 121 -----------------------------------------------NKCDXEDERVVSS 133
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +  +  A+     F E SA D+ NV+  F+ ++
Sbjct: 134 ERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 49/210 (23%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ + VD + +  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER++++  A+YRGA   +LV+D+    T++ ++ W    RD        ++   P     
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW----RDE------FLIQASP----- 112
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                         RD   +N   +++GNK DL + R V    A
Sbjct: 113 ------------------------------RDP--ENFPFVVLGNKIDLEN-RQVATKRA 139
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQNI 219
           + +   +NN+ + ETSA ++ NVE AFQ I
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 49/210 (23%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ + VD + +  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER++++  A+YRGA   +LV+D+    T++ ++ W    RD        ++   P     
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW----RDE------FLIQASP----- 112
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                         RD   +N   +++GNK DL + R V    A
Sbjct: 113 ------------------------------RDP--ENFPFVVLGNKIDLEN-RQVATKRA 139
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQNI 219
           + +   +NN+ + ETSA ++ NVE AFQ I
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 49/208 (23%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           LFKV+L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + ++VD   +  QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER+R++ + +YRG+   LL + +    +++N+  W +E   +AD       V  P     
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD-------VKEP----- 114
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                              ++   +++GNK D+   R V  +EA
Sbjct: 115 -----------------------------------ESFPFVILGNKIDISE-RQVSTEEA 138
Query: 191 KTFAERN-NLSFIETSALDSTNVETAFQ 217
           + +   N +  + ETSA D+TNV  AF+
Sbjct: 139 QAWCRDNGDYPYFETSAKDATNVAAAFE 166

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 49/208 (23%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           LFKV+L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + ++VD   +  QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER+R++ + +YRG+   LL + +    +++N+  W +E   +AD       V  P     
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD-------VKEP----- 116
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                              ++   +++GNK D+   R V  +EA
Sbjct: 117 -----------------------------------ESFPFVILGNKIDISE-RQVSTEEA 140
Query: 191 KTFAERN-NLSFIETSALDSTNVETAFQ 217
           + +   N +  + ETSA D+TNV  AF+
Sbjct: 141 QAWCRDNGDYPYFETSAKDATNVAAAFE 168

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 49/210 (23%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ + VD + +  QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER++++  A+YRGA   +LV+D+    T++ ++ W  E          ++   P      
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF---------LIQASP------ 112
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                         RD   +N   +++GNK D  + R V    A
Sbjct: 113 ------------------------------RDP--ENFPFVVLGNKIDFEN-RQVATKRA 139
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQNI 219
           + +   +NN+ + ETSA ++ NVE AFQ I
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 54/213 (25%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ +D + IK Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 71  ERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           ER+R ++   YYR     + VYD+    ++ ++  W+ E + H                 
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH----------------- 122
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                    LL  DI +                        +LVGNK DLR    VP D 
Sbjct: 123 ---------LLANDIPR------------------------ILVGNKCDLRSAIQVPTDL 149
Query: 190 AKTFAERNNLSFIETSAL---DSTNVETAFQNI 219
           A+ FA+ +++   ETSA    D+ +VE  F  +
Sbjct: 150 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 49/210 (23%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ + VD + +  QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER++++  A+YRGA   +LV+D+    T++ ++ W    RD        ++   P     
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSW----RDE------FLIQASP----- 112
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                         RD   +N   +++GNK DL + R V    A
Sbjct: 113 ------------------------------RDP--ENFPFVVLGNKIDLEN-RQVATKRA 139
Query: 191 KTFA-ERNNLSFIETSALDSTNVETAFQNI 219
           + +   +NN+ + ETSA ++ NVE AFQ I
Sbjct: 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTI 169

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 54/213 (25%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ +D + IK Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 71  ERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           ER+R ++   YYR     + VYD     ++ ++  W+ E + H                 
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQH----------------- 131
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                    LL  DI +                        +LVGNK DLR    VP D 
Sbjct: 132 ---------LLANDIPR------------------------ILVGNKCDLRSAIQVPTDL 158
Query: 190 AKTFAERNNLSFIETSAL---DSTNVETAFQNI 219
           A+ FA+ ++    ETSA    D+ +VE  F  +
Sbjct: 159 AQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 76/111 (68%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+VL+G++ VGKS+++ RF  N+F    + TIG  F T+ + +++ T+K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           + ++   YYR A  AL+VYD+ K  ++     W++EL + A ++I+I LVG
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 62/227 (27%)
Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ------- 57
           + +YDYL K + +GDSGVGK+++L ++T  +FN +  +T+G++F  + +           
Sbjct: 5   DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64
Query: 58  ---KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA- 113
              + I  Q+WDTAG ER+R++T+A++R A+G LL++D+    ++ NV  W+ +L+ HA 
Sbjct: 65  GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124
Query: 114 DQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 173
            +N  I+L G                                                  
Sbjct: 125 SENPDIVLCG-------------------------------------------------- 134
Query: 174 GNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            NKSDL   RAV  +EA+  AE+  + + ETSA + TN+  A + +L
Sbjct: 135 -NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 77/118 (65%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+VL GD+ VGKS+ L R  +NEF     +T+GV+F  +++ VD +    Q+WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           R+R+I  +Y+R A G LL+YD+    ++ N+  W+  + D A + + IMLVG  + +R
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 62/225 (27%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
           +YDYL K++ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  + +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 59  --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
              +  Q+WDTAGQER+R++T+A++R A+G LL++D+    ++ NV  W+ +L+ +A  +
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
           N  I+L+G                                                   N
Sbjct: 141 NPDIVLIG---------------------------------------------------N 149
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           K+DL   R V   +A+  A++  + + ETSA    NVE A + +L
Sbjct: 150 KADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 51/211 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +TI+ Q+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++  +Y R +  A++VYDI    +++   +W+ ++R     +++IMLVG        
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   R V  +E +
Sbjct: 119 -------------------------------------------NKTDLADKRQVSIEEGE 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A+  N+ FIETSA    NV+  F+ +  A
Sbjct: 136 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 166

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 51/211 (24%)
Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           Y FKVVL+G+  VGK++L+ R+  N+FN +  +T+G  F T+ + +  K +   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QER+ A+                                              GP     
Sbjct: 65  QERFHAL----------------------------------------------GPI---- 74
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
            YYR + GA+LVYDI    +++ V+ W++ELR      I + +VGNK DL   R V   E
Sbjct: 75  -YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE 133
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           A+++AE        TSA  +  +E  F ++ 
Sbjct: 134 AESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 62/225 (27%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
           +YDYL K++ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  D +        
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 59  --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
              +  Q+WDTAG ER+R++T+A++R A+G LL++D+    ++ NV  W+ +L+ +A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
           N  I+L+G                                                   N
Sbjct: 127 NPDIVLIG---------------------------------------------------N 135
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           K+DL   R V   +A+  AE+  + + ETSA    NVE + + +L
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 62/225 (27%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
           +YDYL K++ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  D +        
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 59  --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
              +  Q+WDTAG ER+R++T+A++R A+G LL++D+    ++ NV  W+ +L+ +A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
           N  I+L+G                                                   N
Sbjct: 127 NPDIVLIG---------------------------------------------------N 135
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           K+DL   R V   +A+  AE+  + + ETSA    NVE + + +L
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 51/211 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++  +Y R +  A++VYDI    ++    +W+ ++R     +++IMLVG        
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG-------- 126
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   R V  +E +
Sbjct: 127 -------------------------------------------NKTDLSDKRQVSTEEGE 143
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A+  N+ FIETSA    NV+  F+ +  A
Sbjct: 144 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 51/211 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++  +Y R +  A++VYDI    +++   +W+ ++R     +++IMLVG        
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 113
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   R V  +E +
Sbjct: 114 -------------------------------------------NKTDLADKRQVSIEEGE 130
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A+  N+ FIETSA    NV+  F+ +  A
Sbjct: 131 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 161

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 51/206 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V +G+  VGK+++++RF  + F+   +STIG++F ++++ +D+  ++ Q+WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++  +Y R +  A++VYDI    ++EN  +W++++ +   ++++I LVG        
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVG-------- 113
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL  LR V  +E  
Sbjct: 114 -------------------------------------------NKTDLGDLRKVTYEEGX 130
Query: 192 TFAERNNLSFIETSALDSTNVETAFQ 217
             A+  N  F ETSA    N++  F+
Sbjct: 131 QKAQEYNTXFHETSAKAGHNIKVLFK 156

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 108/211 (51%), Gaps = 51/211 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++  +Y R +  A++VYDI    +++   +W+ ++R     +++IMLVG        
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVG-------- 114
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   R +  +E +
Sbjct: 115 -------------------------------------------NKTDLADKRQITIEEGE 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A+  ++ FIETSA    NV+  F+ + +A
Sbjct: 132 QRAKELSVMFIETSAKTGYNVKQLFRRVASA 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 51/211 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +TI+ Q+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++  +Y R +  A++VYDI    +++   +W+ ++R     +++IMLVG        
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 125
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   R V  +E +
Sbjct: 126 -------------------------------------------NKTDLADKRQVSIEEGE 142
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A+  N+ FIETSA    NV+  F+ +  A
Sbjct: 143 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 173

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 51/211 (24%)
Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           Y FKVVL+G+  VGK++L+ R+  N+FN +  +T+   F T+ + +  K +   IWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QER+ A+                                              GP     
Sbjct: 65  QERFHAL----------------------------------------------GPI---- 74
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
            YYR + GA+LVYDI    +++ V+ W++ELR      I + +VGNK DL   R V   E
Sbjct: 75  -YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE 133
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           A+++AE        TSA  +  +E  F ++ 
Sbjct: 134 AESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAG 69
           + KV+++GDSGVGK++L+ R+  ++++ + K+TIG +F T+ + VD  K    Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
           QER++++  A+YRGA   +LVYD+    ++EN++ W  E   HA+ N
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN 114

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 51/211 (24%)
Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           Y FKVVL+G+  VGK++L+ R+  N+FN +  +T+   F T+ + +  K +   IWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QER+ A+                                              GP     
Sbjct: 79  QERFHAL----------------------------------------------GPI---- 88
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
            YYR + GA+LVYDI    +++ V+ W++ELR      I + +VGNK DL   R V   E
Sbjct: 89  -YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE 147
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           A+++AE        TSA  +  +E  F ++ 
Sbjct: 148 AESYAESVGAKHYHTSAKQNKGIEELFLDLC 178

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 62/225 (27%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
           +YDYL K++ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  D +        
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 59  --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
              +  Q+WDTAG ER+R++T+A++R A G LL +D+    ++ NV  W  +L+ +A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
           N  I+L+G                                                   N
Sbjct: 127 NPDIVLIG---------------------------------------------------N 135
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           K+DL   R V   +A+  AE+  + + ETSA    NVE + + +L
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 62/225 (27%)
Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-------- 58
           +YDYL K++ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  D +        
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 59  --TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQ 115
              +  Q+WDTAG ER+R++T+A++R A G LL +D+    ++ NV  W  +L+ +A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
           N  I+L+G                                                   N
Sbjct: 127 NPDIVLIG---------------------------------------------------N 135
Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           K+DL   R V   +A+  AE+  + + ETSA    NVE + + +L
Sbjct: 136 KADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 51/211 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++  +Y R +  A++VYDI    +++   +W+ ++R     +++IMLVG        
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   R V  +E +
Sbjct: 119 -------------------------------------------NKTDLADKRQVSIEEGE 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A+  N+ FIETSA    NV+  F+ +  A
Sbjct: 136 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 166

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 106/211 (50%), Gaps = 51/211 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++  +Y R +  A++VYDI    +++   +W+ ++R     +++IMLVG        
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVG-------- 128
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   R V  +E +
Sbjct: 129 -------------------------------------------NKTDLADKRQVSIEEGE 145
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A+  N+ FIETSA    NV+  F+ +  A
Sbjct: 146 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 176

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 52/205 (25%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++G+  VGKS+++ R+ +  F  + K TIGV+F  R IQV+ + ++  +WDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           + AIT AYYRGA   +LV+      ++E +  W  +         V+  VG         
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK---------VVAEVG--------- 108
Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                             +I   LV NK DL     +  +EA+ 
Sbjct: 109 ----------------------------------DIPTALVQNKIDLLDDSCIKNEEAEG 134
Query: 193 FAERNNLSFIETSALDSTNVETAFQ 217
            A+R  L F  TS  +  NV   F+
Sbjct: 135 LAKRLKLRFYRTSVKEDLNVSEVFK 159

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           +Y  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 126

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +   T+GVE        ++  IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 114

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++ +D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
           + E    FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +
Sbjct: 4   QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 63
Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           WDTAGQE++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 64  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
           + E    FK+VL+GD G GK+  + R    EF  +   T+GVE        ++  IK  +
Sbjct: 4   QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNV 63
Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           WDTAGQE++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 64  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +TIGVE    S   +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCG 123

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +TIGVE    S   +   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCG 115

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +TIGVE    S   +   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCG 116

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 121

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    E   +  +T+GVE        ++  IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 126

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
           + E    FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +
Sbjct: 6   QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNV 65
Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           WDTAG E++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 66  WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 123

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           ++  +   YY  A  A++++D+   +TY+NV  W R+L     +NI I+L G
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCG 117

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 49/209 (23%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-TIKAQIWDTAGQ 70
            K+V++GD   GK++L + F +  F  + K TIG++F  R I +     +  QIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
                +   Y  GA G LLVYDI  + ++EN+E W                         
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDW------------------------- 101
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                      Y + K ++ E            ++   ++ LVGNK DL H+R +  ++ 
Sbjct: 102 -----------YTVVKKVSEE------------SETQPLVALVGNKIDLEHMRTIKPEKH 138
Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNI 219
             F + N  S    SA    +V   FQ +
Sbjct: 139 LRFCQENGFSSHFVSAKTGDSVFLCFQKV 167

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 96/242 (39%), Gaps = 91/242 (37%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV---------------- 55
           +K VL+G+S VGKS+++ R T++ F+  + +TIG  F T  + +                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 56  ---------------------DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA 94
                                +   IK  IWDTAGQERY +I   YYRGA  A++V+DI+
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 95  KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE 154
              T +  + W+ +L+     N +I+LV                                
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILV-------------------------------- 153
Query: 155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVET 214
                               NK D    + V   E + +A+ NNL FI+TSA   TN++ 
Sbjct: 154 -------------------ANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTSAKTGTNIKN 193
Query: 215 AF 216
            F
Sbjct: 194 IF 195

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-KTIKAQIWDTAGQ 70
           +K+ LIGD GVGK+  ++R     F     +T+G      +   DQ   IK  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           E+   +   YY GA GA+L +D+   +T +N+ RW++E +        I++      ++ 
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 131 YYRGAVGALLVYDIAKHLTYENVE 154
             R  +   LV ++ K   YE  E
Sbjct: 132 --RQKISKKLVMEVLKGKNYEYFE 153

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + ++  I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
           E Y AI   Y+R   G LLV+ I +H ++     +  + LR  A+++ + +LV       
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV------- 114
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                      VGNKSDL   R VP +E
Sbjct: 115 -------------------------------------------VGNKSDLEERRQVPVEE 131
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           A++ AE   + ++ETSA    NV+  F +++
Sbjct: 132 ARSKAEEWGVQYVETSAKTRANVDKVFFDLM 162

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + ++  I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
           E Y AI   Y+R   G LLV+ I +H ++     +  + LR  A+++ + +LV       
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV------- 118
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                      VGNKSDL   R VP +E
Sbjct: 119 -------------------------------------------VGNKSDLEERRQVPVEE 135
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           A++ AE   + ++ETSA    NV+  F +++
Sbjct: 136 ARSKAEEWGVQYVETSAKTRANVDKVFFDLM 166

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VD  T+   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGNTVNLGLWDTAGQ 64
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR +A   + I+LVG
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVG 117

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VD  T+   +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           E Y  +    YRGA   LL + +    +YEN+ ++WL EL+ +A   I I+LVG
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVG 117

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 53/211 (25%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + ++  I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
           E Y AI   Y+R   G L V+ I +  ++     +  + LR   D+N+  +LVG      
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG------ 126
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                        NKSDL   R V  +E
Sbjct: 127 ---------------------------------------------NKSDLEDKRQVSVEE 141
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           AK  AE+ N++++ETSA    NV+  F +++
Sbjct: 142 AKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VD + +   +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           E Y  +    YRGA   +L + +    +YENV ++W+ ELR  A  N+ I+LVG
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVG 120

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
             K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+  T+   +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQ 66
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ +A   + I+LVG
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVG 119

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           KVVL+GD G GK++LL  F    F  ES +    E    ++QV  K +   IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD 94
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRR 130
           Y  +   +Y  A   LL +D+    +++N+  RW  E+ +H  + + I++VG  + LR+
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 53/211 (25%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + ++  I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
           E Y AI   Y+R   G L V+ I +  ++     +  + LR   D+N+  +LVG  S   
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS--- 133
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                           DL   R V  +E
Sbjct: 134 ------------------------------------------------DLEDKRQVSVEE 145
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           AK  AE+ N++++ETSA    NV+  F +++
Sbjct: 146 AKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 53/211 (25%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + ++  I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
           E Y AI   Y+R   G L V+ I +  ++     +  + LR   D+N+  +LVG  S   
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS--- 121
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                           DL   R V  +E
Sbjct: 122 ------------------------------------------------DLEDKRQVSVEE 133
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           AK  AE+ N++++ETSA    NV+  F +++
Sbjct: 134 AKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y     +L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 116

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 43/212 (20%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K VL+GD  VGK++L+  +T N +  E   T    F+   + VD + ++ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSA-VVSVDGRPVRLQLCDTAGQDE 80
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           +  +    Y      LL + +    +++NV E+W+ E+R H  +  +I LVG  S LR  
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDLRE- 138
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                            D  ++I L     D    + VP + AK
Sbjct: 139 ---------------------------------DVKVLIEL-----DKCKEKPVPEEAAK 160
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNILTA 222
             AE     S+IE SAL   N++  F   + A
Sbjct: 161 LLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y     +L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y     +L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 66
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y     +L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 118

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIML 121
            Y  +    Y      L+ + +    +YENV  +W  E+R H     +I++
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILV 113

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 53/211 (25%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + ++  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
           E Y AI   Y+R   G L V+ I +  ++     +  + LR   D+N+  +LVG  S   
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS--- 119
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                           DL   R V  +E
Sbjct: 120 ------------------------------------------------DLEDKRQVSVEE 131
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           AK  A++ N++++ETSA    NV+  F +++
Sbjct: 132 AKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 68
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIML 121
            Y  +    Y      L+ + +    +YENV  +W  E+R H     +I++
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILV 119

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N F+ E   T+   ++  ++ VD K +   +WDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 73
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 124

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 69
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIML 121
            Y  +    Y      L+ + +    +YENV  +W  E+R H     +I++
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILV 120

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 90
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 141

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 81
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 133

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 69
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 121

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 48/225 (21%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 64
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y  +    Y   VG     DI                    D+ I  +           
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSR---------------GKDKPIADVF---------- 99
Query: 132 YRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGNKSDLR---------- 180
                  L+ + +    ++ENV  +W  E+R H   N  I+LVG K DLR          
Sbjct: 100 -------LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLK 151
Query: 181 HLRAVPADEAKTFA---ERNNLSFIETSALDSTNVETAFQNILTA 222
             +  P    +  A   E   + ++E SAL    ++T F   + A
Sbjct: 152 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 196

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 53/211 (25%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++G  GVGKS L  +F  +EF +E       +   + + +D + ++  I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGPPSLLR 129
           E Y AI   Y+R   G L V+ I +  ++     +  + LR   D+N+  +LVG  S   
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS--- 121
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                           DL   R V  +E
Sbjct: 122 ------------------------------------------------DLEDKRQVSVEE 133
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           AK  AE+ N++++ETSA    NV+  F +++
Sbjct: 134 AKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + +    ++ENV  +W  E+R H      I+LVG
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVG 114

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H      I+LVG
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVG 115

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H      I+LVG
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-PILLVG 115

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L V+ I    ++E++ ++  +++   D + V M+          
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------- 112
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                   LVGNK DL   R V + +A+
Sbjct: 113 ----------------------------------------LVGNKCDL-AARTVESRQAQ 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A    + +IETSA     VE AF  ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L V+ I    ++E++ ++  +++   D + V M+          
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------- 112
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                   LVGNK DL   R V + +A+
Sbjct: 113 ----------------------------------------LVGNKCDLAG-RTVESRQAQ 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A    + +IETSA     VE AF  ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L V+ I    ++E++ ++  +++   D + V M+          
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------- 112
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                   LVGNK DL   R V + +A+
Sbjct: 113 ----------------------------------------LVGNKCDL-AARTVESRQAQ 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A    + +IETSA     VE AF  ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 52/210 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + ++VD +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+   Y +   G  LVY I    T+ +    L++LR+               +LR  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------------ILR-- 102
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       ++D  D  + ++LVGNK DL   R V  ++ +
Sbjct: 103 ----------------------------VKDTDD--VPMILVGNKCDLEDERVVGKEQGQ 132
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
             A + NN +F+E+SA    NV   F +++
Sbjct: 133 NLARQWNNCAFLESSAKSKINVNEIFYDLV 162

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L V+ I    ++E++ ++  +++   D + V M+          
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------- 112
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                   LVGNK DL   R V + +A+
Sbjct: 113 ----------------------------------------LVGNKCDL-AARTVESRQAQ 131
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A    + +IETSA     VE AF  ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N    E   T+   ++  ++ VD K +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 89
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 141

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 114

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLE 65
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
            Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 117

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 120

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 117

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 118

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED 90
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + +    ++ENV  +W  E+R H   N  I+LVG
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG 141

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 52/210 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  E   TI   +  + ++VD +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+   Y +   G  LVY I    T+ +    L++LR+               +LR  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------------ILR-- 102
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       ++D  D  + ++LVGNK DL   R V  ++ +
Sbjct: 103 ----------------------------VKDTED--VPMILVGNKCDLEDERVVGKEQGQ 132
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
             A +  N +F+E+SA    NV   F +++
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 52/210 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + ++VD +    +I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+   Y +   G  LVY I    T+ +    L++LR+               +LR  
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------------ILR-- 104
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       ++D  D  + ++LVGNK DL   R V  ++ +
Sbjct: 105 ----------------------------VKDTDD--VPMILVGNKCDLEDERVVGKEQGQ 134
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
             A + NN +F+E+SA    NV   F +++
Sbjct: 135 NLARQWNNCAFLESSAKSKINVNEIFYDLV 164

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 117

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 119

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVG 136

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 118

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 118

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 136

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y       Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F+++EF      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + +    + EN+ E+W+ E++ H   N+ I+LV 
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVA 136

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 83/209 (39%), Gaps = 52/209 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L V+ I    ++E++  +  +++   D   V M++         
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL--------- 114
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                    VGNK DL   R V   +A+
Sbjct: 115 -----------------------------------------VGNKCDLPS-RTVDTKQAQ 132
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A    + FIETSA     V+ AF  ++
Sbjct: 133 DLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 52/210 (24%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + ++VD +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+   Y +   G  LVY I    T+ +    L++LR+               +LR  
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------------ILR-- 102
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       ++D  D  + ++LVGNK DL   R V  ++ +
Sbjct: 103 ----------------------------VKDTED--VPMILVGNKCDLEDERVVGKEQGQ 132
Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
             A +  N +F+E+SA    NV   F +++
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S ++D + I+  +WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
           Y  +    Y  +   L+ +DI++  T ++V ++W  E+++    N  ++LVG  S LR
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 145

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S ++D + I+  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
           Y  +    Y  +   L+ +DI++  T ++V ++W  E+++    N  ++LVG  S LR
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 124

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
           E Y  +    Y      L+ + +    ++ +V  +W  E+R H   N  I+LVG
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
           E Y  +    Y      L+ + +    ++ +V  +W  E+R H   N  I+LVG
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S ++D + I+  +WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLR 129
           Y  +    Y  +   L+ +DI++  T ++V ++W  E+++    N  ++LVG  S LR
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR 140

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L K V++GD  VGK+ LL  +T N F  E   T+   ++  ++ VD K +   +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVG 123
           E Y  +    Y      L+ + +    ++ +V  +W  E+R H   N  I+LVG
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVG 266

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 54/210 (25%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIMLVGPPSLLRR 130
            Y A+   Y R   G L V+ I    ++E++  +  +++   D +++ ++LVG       
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG------- 116
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                                       NKSDL   R V   +A
Sbjct: 117 --------------------------------------------NKSDLPS-RTVDTKQA 131
Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +  A    + FIETSA     V+ AF  ++
Sbjct: 132 QDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL   ++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL   ++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 114

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL   ++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 114

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 13  KVVLIGDSGVGKSNLLSRFTR--NEFNLESKSTIGVEFATRSIQVDQKTIKAQIW--DTA 68
           KV ++G++ VGKS L+S FT   ++F  +   T GVE     + +   T+  +++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELR 110
           G + Y+   S Y+ G   A+LV+D++   ++E+ + W   L+
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK 123

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 132
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 133 PSTIEK---------LAKNKQKPITPETAEKLARDLK 160

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL   ++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 125 PSTIEK---------LAKNKQKPITPETAEKLARDLK 152

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 125 PSTIEK---------LAKNKQKPITPETAEKLARDLK 152

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 127 PSTIEK---------LAKNKQKPITPETAEKLARDLK 154

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL   ++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 126 PSTIEK---------LAKNKQKPITPETAEKLARDLK 153

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 126 PSTIEK---------LAKNKQKPITPETAEKLARDLK 153

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 123
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 124 PSTIEK---------LAKNKQKPITPETAEKLARDLK 151

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 130 PSTIEK---------LAKNKQKPITPETAEKLARDLK 157

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           + K V++GD  VGK+ LL  +  + F  E   T+   +A  S+ V  K     ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           E Y  +    Y      L+ + +    +++NV E W+ EL+++A  N+  +L+G
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIG 129

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 70
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 129
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 130 PSTIEK---------LAKNKQKPITPETAEKLARDLK 157

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL   ++++F      T+  E     I+VD K ++  +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 116

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
           ++  +Y R   G L+VY +    ++E+V+R+ +  LR    ++  ++LV NK DL HLR 
Sbjct: 81  AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140
Query: 185 VPADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
           V  D+ K  A + N+ +IETSA D   NV+  F +++
Sbjct: 141 VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
           ++  +Y R   G L+VY +    ++E+V+R+ +  LR    ++  ++LV NK DL HLR 
Sbjct: 81  AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140
Query: 185 VPADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
           V  D+ K  A + N+ +IETSA D   NV+  F +++
Sbjct: 141 VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
           ++  +Y R   G L+VY +    ++E+V+R+ +  LR    ++  ++LV NK DL HLR 
Sbjct: 81  AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 140
Query: 185 VPADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
           V  D+ K  A + N+ +IETSA D   NV+  F +++
Sbjct: 141 VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
           ++  +Y R   G L+VY +    ++E+V+R+ +  LR    ++  ++LV NK DL HLR 
Sbjct: 76  AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK 135
Query: 185 VPADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
           V  D+ K  A + N+ +IETSA D   NV+  F +++
Sbjct: 136 VTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 172

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E    +   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     + DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL   ++++F      T+  E     I+VD K ++  +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y      L+ + I    + EN+ E+W  E++ H   N+ I+LVG
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVG 119

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+   E   T+   +A  ++ +  +     ++DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 123 PSTIEK---------LAKNKQKPITPETAEKLARDLK 150

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N+F  E   T+   +A  ++ +  +     ++DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 67
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGP------- 124
           Y  +    Y      L+ + +    ++ENV E+W+ E+  H  +    +LVG        
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR 161
           PS + +         L  +  K +T E  E+  R+L+
Sbjct: 127 PSTIEK---------LAKNKQKPITPETAEKLARDLK 154

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-GVEFATRSIQVDQKT---IKAQIWDT 67
           ++VVLIG+ GVGKS L + F     +++S   + G +   R++ VD ++   I   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
            G+  +                                   L DH       M VG    
Sbjct: 67  KGENEW-----------------------------------LHDHC------MQVGDA-- 83
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVP 186
                      L+VY I    ++E       +LR     ++I I+LVGNKSDL   R V 
Sbjct: 84  ----------YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
             E +  A   +  FIETSA    NV+  F+ I+
Sbjct: 134 VSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 167

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-GVEFATRSIQVDQKT---IKAQIWDT 67
           ++VVLIG+ GVGKS L + F     +++S   + G +   R++ VD ++   I   +W+ 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
            G+  +                                   L DH       M VG    
Sbjct: 98  KGENEW-----------------------------------LHDHC------MQVGDA-- 114
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVP 186
                      L+VY I    ++E       +LR     ++I I+LVGNKSDL   R V 
Sbjct: 115 ----------YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS 164
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
             E +  A   +  FIETSA    NV+  F+ I+
Sbjct: 165 VSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL   ++ +F      T+  E     ++VD + ++  +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVG 123
           Y  +    Y  +   L+ + I    + ENV E+W+ E+  H  Q + I+LVG
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVG 121

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 51/197 (25%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +F ++ F  +   TI   +  + + +D +  +  I DTAGQE + A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G LLV+ +    ++E + ++ R++                                  
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQI---------------------------------- 102
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                           LR        ++L+GNK+DL H R V  +E +  A +  ++++E
Sbjct: 103 ----------------LRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYME 146
Query: 204 TSALDSTNVETAFQNIL 220
            SA    NV+ AF  ++
Sbjct: 147 ASAKIRMNVDQAFHELV 163

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 53/210 (25%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFT-RNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           L++VVL+GD GVGK++L S F  + E +L  +  +G +   R++ VD +     + DT  
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ--LGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
            E+                              + W +E                     
Sbjct: 62  AEKLD----------------------------KSWSQE--------------------- 72
Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPAD 188
              +G    ++VY IA   ++E+      +LR  H   ++ I+LVGNK+DL   R V  +
Sbjct: 73  SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE 132
Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQN 218
           E +  A   +  FIETSA    NV   F+ 
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELFEG 162

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKT---IKAQIWDT 67
           ++VVLIG+ GVGKS L + F     +++S    +G +   R++ VD ++   I   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
            G+  +                                   L DH       M VG    
Sbjct: 67  KGENEW-----------------------------------LHDHC------MQVGDA-- 83
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD-HADQNIVIMLVGNKSDLRHLRAVP 186
                      L+VY I    ++E       +LR     ++I I+LVGNKSDL   R V 
Sbjct: 84  ----------YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
             E +  A   +  FIETSA    NV+  F+ I+
Sbjct: 134 VSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKT---IKAQIWDT 67
           ++VVLIG+ GVGKS L + F     +++S    +G +   R++ VD ++   I   +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
            G+  +                                   L DH       M VG    
Sbjct: 67  KGENEW-----------------------------------LHDHX------MQVGDA-- 83
Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD-HADQNIVIMLVGNKSDLRHLRAVP 186
                      L+VY I    ++E       +LR     ++I I+LVGNKSDL   R V 
Sbjct: 84  ----------YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
             E +  A   +  FIETSA    NV+  F+ I+
Sbjct: 134 VSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIV 167

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE-LRDHADQNIVIMLVGNKSDLRHLRA 184
           ++  +Y R   G LLV+ I    ++  V +   + LR     +  ++LVGNK+DL   R 
Sbjct: 72  AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131
Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           VP  EA  F   +++++ E SA    NV+ AF+ ++ A
Sbjct: 132 VPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA 169

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 53/209 (25%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+ ++G   VGKS+L  +F   +F   +  TI   F T+ I V+ +    Q+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-NIVIMLVGPPSLLRRY 131
           Y      Y     G +LVY +    ++E ++    +L D   +  I IMLVG        
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG-------- 116
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK DL   R +  +E K
Sbjct: 117 -------------------------------------------NKKDLHMERVISYEEGK 133
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             AE  N +F+E+SA ++      F+ I+
Sbjct: 134 ALAESWNAAFLESSAKENQTAVDVFRRII 162

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K+V++GD  VGK+ LL  F++ E       T+   F +  ++   +     +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRR 130
            Y  +    Y  +   LL + +    +++N+  +W  E++ + D    + LVG    LR+
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRK 140

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 54/211 (25%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           ++V + G  GVGKS+L+ RF +  F      T+   +  + I  D+     QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++                                                   P++ R  
Sbjct: 63  QF---------------------------------------------------PAMQRLS 71
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRD-HAD-QNIVIMLVGNKSDLRHLRAVPADE 189
                  +LVY I    + E ++    ++ +   D ++I IMLVGNK D    R V + E
Sbjct: 72  ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSE 131
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           A+  A     +F+ETSA  + NV+  FQ +L
Sbjct: 132 AEALARTWKCAFMETSAKLNHNVKELFQELL 162

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K+V++GD  VGK+ LL  F++ E       T+   F +  ++   +     +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRR 130
            Y  +    Y  +   LL + +    +++N+  +W  E++ + D    + LVG    LR+
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRK 141

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M++                     
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL--------------------- 113
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                        VGNKSDL   R V + +A+  A    + +IE
Sbjct: 114 -----------------------------VGNKSDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 93/214 (43%), Gaps = 60/214 (28%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           ++KV+L+G  GVGKS L   F   E   E+++  G  +  RSI VD            G+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVD------------GE 52
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           E               +L+VYDI +    ++  RWL                 P   +  
Sbjct: 53  E--------------ASLMVYDIWE----QDGGRWL-----------------PGHCM-- 75
Query: 131 YYRGAVGA--LLVYDIAKHLTYENVERWLRELRDHADQ--NIVIMLVGNKSDLRHLRAVP 186
               A+G   ++VY +    ++E       +LR  A Q  ++ I+LVGNKSDL   R V 
Sbjct: 76  ----AMGDAYVIVYSVTDKGSFEKASELRVQLR-RARQTDDVPIILVGNKSDLVRSREVS 130
Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            DE +  A   +  FIETSA    NV+  F+ ++
Sbjct: 131 VDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 164

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 53/209 (25%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+ ++G   VGKS+L  +F   +F      TI   F T+ I V+ +    Q+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-NIVIMLVGPPSLLRRY 131
           Y      Y     G +LVY +    ++E ++    +L D   +  I IMLVG        
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG-------- 113
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK DL   R +  +E K
Sbjct: 114 -------------------------------------------NKKDLHMERVISYEEGK 130
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             AE  N +F+E+SA ++      F+ I+
Sbjct: 131 ALAESWNAAFLESSAKENQTAVDVFRRII 159

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 58/213 (27%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           ++KV+L+G  GVGKS L   F   E   E+++  G  +  RSI VD            G+
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVD------------GE 47
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           E               +L+VYDI +    ++  RWL                 P   +  
Sbjct: 48  E--------------ASLMVYDIWE----QDGGRWL-----------------PGHCM-- 70
Query: 131 YYRGAVGA--LLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPA 187
               A+G   ++VY +    ++E       +LR      ++ I+LVGNKSDL   R V  
Sbjct: 71  ----AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV 126
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           DE +  A   +  FIETSA    NV+  F+ ++
Sbjct: 127 DEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 53/209 (25%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+ ++G   VGKS+L  +F   +F      TI   F T+ I V+ +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-NIVIMLVGPPSLLRRY 131
           Y      Y     G +LVY +    ++E ++    +L D   +  I IMLVG        
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK DL   R +  +E K
Sbjct: 119 -------------------------------------------NKKDLHMERVISYEEGK 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             AE  N +F+E+SA ++      F+ I+
Sbjct: 136 ALAESWNAAFLESSAKENQTAVDVFRRII 164

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 117
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 118 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 148
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 149 TSAKTRQGVEDAFYTLV 165

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 117
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 118 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 148
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 149 TSAKTRQGVEDAFYTLV 165

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 119
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 120 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 150
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 151 TSAKTRQGVEDAFYTLV 167

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 53/209 (25%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           KVV++G   VGK++L  +F   EF+     T+   + ++ + + +      + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRD-HADQNIVIMLVGPPSLLRRY 131
           Y  +  ++  G  G +LVY +    +++ +E   ++L + H    + ++LVG        
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG-------- 136
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK+DL   R V A E K
Sbjct: 137 -------------------------------------------NKADLSPEREVQAVEGK 153
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             AE    +F+E+SA ++   +  F  ++
Sbjct: 154 KLAESWGATFMESSARENQLTQGIFTKVI 182

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 58/213 (27%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           ++KV+L+G  GVGKS L   F   E   E+++  G  +  RSI VD            G+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTY-DRSIVVD------------GE 52
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           E               +L+VYDI +    ++  RWL                 P   +  
Sbjct: 53  E--------------ASLMVYDIWE----QDGGRWL-----------------PGHCM-- 75
Query: 131 YYRGAVGA--LLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPA 187
               A+G   ++VY +    ++E       +LR      ++ I+LVGNKSDL   R V  
Sbjct: 76  ----AMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV 131
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           DE +  A   +  FIETSA    NV+  F+ ++
Sbjct: 132 DEGRACAVVFDCKFIETSAALHHNVQALFEGVV 164

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI  E   + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 53/209 (25%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+ ++G   VGKS+L  +F   +F      TI   F T+ I V+ +    Q+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ-NIVIMLVGPPSLLRRY 131
           Y      Y     G +LVY +    ++E ++    +L D   +  I IMLVG        
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG-------- 118
Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                                      NK DL   R +  +E K
Sbjct: 119 -------------------------------------------NKKDLHMERVISYEEGK 135
Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             AE  N +F+E+SA ++      F+ I+
Sbjct: 136 ALAESWNAAFLESSAKENQTAVDVFRRII 164

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+VL+GD   GK+ +L    ++ +      T+  E  T  ++ +++ ++  +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIML 121
           Y  +    Y  +   LL +DI++  T ++ +++W  E+ D+     V+++
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 120

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+VL+GD   GK+ +L    ++ +      T+  E  T  ++ +++ ++  +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIML 121
           Y  +    Y  +   LL +DI++  T ++ +++W  E+ D+     V+++
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 121

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+VL+GD   GK+ +L    ++ +      T+  E  T  ++ +++ ++  +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIML 121
           Y  +    Y  +   LL +DI++  T ++ +++W  E+ D+     V+++
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 51/215 (23%)
Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
           + + D +FKV+L+G+SGVGKS L   F   + +   +     +   R I VD++ +    
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV---- 72
Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
                                  L+VYDI +     +   WLR   DH  Q         
Sbjct: 73  ----------------------TLVVYDIWEQ---GDAGGWLR---DHCLQT-------- 96
Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLR 183
                         L+V+ +    ++  V   L  LR      ++ ++LVGNKSDL   R
Sbjct: 97  ----------GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR 146
Query: 184 AVPADEAKTFAERNNLSFIETSALDSTNVETAFQN 218
            V  +E +  A   +   IETSA    N    F+ 
Sbjct: 147 EVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 181

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   +I   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 118
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 119 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 149
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 150 TSAKTRQGVEDAFYTLV 166

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGN+ DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNRCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   +I   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DT GQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           K+ L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DT GQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  +   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAG+E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 76/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  +   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDLA-ARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 73/197 (37%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++ ++  +  +++   D + V M+                      
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV---------------------- 130
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V   +A   A+   + FIE
Sbjct: 131 ----------------------------LVGNKCDL-PTRTVDTKQAHELAKSYGIPFIE 161
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 162 TSAKTRQGVEDAFYTLV 178

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +     I DTAGQE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 54/198 (27%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A        
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA-------- 67
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
                                    +RD                  +Y R   G L V+ 
Sbjct: 68  -------------------------MRD------------------QYMRTGEGFLCVFA 84
Query: 144 IAKHLTYENVERWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFI 202
           I    ++E++  +  +++   D +++ ++LVGNKSDL   R V   +A+  A    + FI
Sbjct: 85  INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFI 143
Query: 203 ETSALDSTNVETAFQNIL 220
           ETSA     V+ AF  ++
Sbjct: 144 ETSAKTRQGVDDAFYTLV 161

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 54/198 (27%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE Y A        
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA-------- 67
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
                                    +RD                  +Y R   G L V+ 
Sbjct: 68  -------------------------MRD------------------QYMRTGEGFLCVFA 84
Query: 144 IAKHLTYENVERWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFI 202
           I    ++E++  +  +++   D +++ ++LVGNKSDL   R V   +A+  A    + FI
Sbjct: 85  INNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFI 143
Query: 203 ETSALDSTNVETAFQNIL 220
           ETSA     V+ AF  ++
Sbjct: 144 ETSAKTRQGVDDAFYTLV 161

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAG E Y A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 117
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 118 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 148
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 149 TSAKTRQGVEDAFYTLV 165

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTA QE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKXDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTA QE Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKXDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+ + G +GVGKS L+ RF    F  E   T+   +  ++  +D + +  +I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQED 88
Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENV---ERWLRELRDHADQNIVIMLVG 123
                  + R   G +LVYDI    ++E V   +  L E++    +N+ ++LVG
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVG 139

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 15/141 (10%)
Query: 80  YYRGAVG--ALLVYDIAKHLTYENVERWLRELRDHA--DQNIVIMLV----GPPSLLRR- 130
           + R  VG  AL+V  + K   +E         R  A  D  +V M +    G    ++R 
Sbjct: 34  FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQRE 93
Query: 131 -YYRGAVGALLVYDIAKHLTYENV---ERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
            + R   G +LVYDI    ++E V   +  L E++    +N+ ++LVGNK+DL H R V 
Sbjct: 94  GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLDHSRQVS 151
Query: 187 ADEAKTFAERNNLSFIETSAL 207
            +E +  A     +F E SA 
Sbjct: 152 TEEGEKLATELACAFYECSAC 172

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAG E Y A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 51/211 (24%)
Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           D +FKV+L+G+SGVGKS L   F   + +   +     +   R I VD++ +        
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEV-------- 61
Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
                              L+VYDI +     +   WL+   DH  Q             
Sbjct: 62  ------------------TLIVYDIWEQ---GDAGGWLQ---DHCLQT------------ 85
Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPA 187
                     L+V+ +    ++  V   L  LR      ++ ++LVGNKSDL   R V  
Sbjct: 86  ------GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL 139
Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQN 218
           +E +  A   +   IETSA    N    F+ 
Sbjct: 140 EEGRHLAGTLSCKHIETSAALHHNTRELFEG 170

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE   A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++ ++  +++   D + V M+                      
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV---------------------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                       LVGNK DL   R V + +A+  A    + +IE
Sbjct: 113 ----------------------------LVGNKCDL-AARTVESRQAQDLARSYGIPYIE 143
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     VE AF  ++
Sbjct: 144 TSAKTRQGVEDAFYTLV 160

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 72/197 (36%), Gaps = 52/197 (26%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +  +N F  E   TI   +  + + +D +T    I DTAG E Y A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G L V+ I    ++E++  +  +++   D   V M++                     
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL--------------------- 131
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                        VGNK DL   R V   +A+  A    + FIE
Sbjct: 132 -----------------------------VGNKCDLPS-RTVDTKQAQDLARSYGIPFIE 161
Query: 204 TSALDSTNVETAFQNIL 220
           TSA     V+ AF  ++
Sbjct: 162 TSAKTRQGVDDAFYTLV 178

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           +FKV+L+G+SGVGKS L   F   + +   +     +   R I VD++ +          
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEV---------- 51
Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
                            L+VYDI +     +   WL+   DH  Q               
Sbjct: 52  ----------------TLIVYDIWEQ---GDAGGWLQ---DHCLQT-------------- 75
Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELR-DHADQNIVIMLVGNKSDLRHLRAVPADE 189
                   L+V+ +    ++  V   L  LR      ++ ++LVGNKSDL   R V  +E
Sbjct: 76  ----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEE 131
Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQN 218
            +  A   +   IETSA    N    F+ 
Sbjct: 132 GRHLAGTLSCKHIETSAALHHNTRELFEG 160

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 51/197 (25%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS L  +F    F  +   TI  +F  + I+VD      +I DTAG E++ ++   Y + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
             G +LVY +    +++++    + +RD   +            ++RY            
Sbjct: 75  GQGFILVYSLVNQQSFQDI----KPMRDQIIR------------VKRY------------ 106
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                 + + ++LVGNK DL   R V + E +  AE     F+E
Sbjct: 107 ----------------------EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFME 144
Query: 204 TSALDSTNVETAFQNIL 220
           TSA   T V+  F  I+
Sbjct: 145 TSAKSKTMVDELFAEIV 161

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G++E+      ++ L+G    GK+  ++     +FN +   T+G  F  R I     TIK
Sbjct: 18  GSKEE-----MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK 70
Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIM 120
             +WD  GQ R+R++   Y RG    + + D A     E  +  L  L D    Q I ++
Sbjct: 71  --LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 128
Query: 121 LVG 123
           ++G
Sbjct: 129 VLG 131

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            ++ L+G    GK+  ++     +FN +   T+G  F  R I     TIK  +WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 87
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIMLVG 123
           R+R++   Y RG    + + D A     E  +  L  L D    Q I ++++G
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 140

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G  G GK+ +L +    E  + +  TIG    T    V  K I   +WD  GQ+
Sbjct: 1  MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 55
Query: 72 RYRAITSAYYRGAVGALLVYD 92
          R R++   YYR   G + V D
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVD 76

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G  G GK+ +L +    E  + +  TIG    T    V  K I   +WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 72 RYRAITSAYYRGAVGALLVYD 92
          R R++   YYR   G + V D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVID 93

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G  G GK+ +L +    E  + +  TIG    T    V  K I   +WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 72 RYRAITSAYYRGAVGALLVYD 92
          R R++   YYR   G + V D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVD 93

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G    GK+ +L +    + ++ +  T+G    T    V  K +K  +WD  GQ+
Sbjct: 1  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
          + R +   YY G  G + V D A
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCA 78

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G++E+      ++ L+G    GK+  ++     +F+ +   T+G  F  R +     TIK
Sbjct: 18  GSKEE-----MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK 70
Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIVIM 120
             IWD  GQ R+R++   Y RG    + + D A     E     L  L D    Q I ++
Sbjct: 71  --IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVL 128
Query: 121 LVG 123
           ++G
Sbjct: 129 VLG 131

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G    GK+ +L +    + ++ +  T+G    T    V  K +K  +WD  GQ+
Sbjct: 1  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 55
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
          + R +   YY G  G + V D A
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCA 78

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            +++++G    GK+ +L +    + ++ +  T+G    T    V  K +K  +WD  GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 377
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL------RELRD 111
           + R +   YY G  G + V D A     +   + L      RE+RD
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G    GK+ +L +    + ++ +  T+G    T    V  K +K  +WD  GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 68
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
          + R +   YY G  G + V D A
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCA 91

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G    GK+ +L +    + ++ +  T+G    T    V  K +K  +WD  GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQD 67
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
          + R +   YY G  G + V D A
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCA 90

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 74/198 (37%), Gaps = 51/198 (25%)
Query: 24  KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG 83
           KS+L+ RF +  F      TI   +  + I  D+     QI DT G  ++ A+       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 84  AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYD 143
               +LV+ +    + E                     +GP   L    +G+V       
Sbjct: 80  GHAFILVFSVTSKQSLEE--------------------LGPIYKLIVQIKGSV------- 112
Query: 144 IAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIE 203
                                 ++I +MLVGNK D    R V   EA+  A+    +F+E
Sbjct: 113 ----------------------EDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFME 149
Query: 204 TSALDSTNVETAFQNILT 221
           TSA  + NV+  FQ +LT
Sbjct: 150 TSAKMNYNVKELFQELLT 167

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 13  KVVLIGDSGVGKSNLLSRFTR---NEFNLESKSTIGVEFATRSIQVDQK---TIKAQIWD 66
           K+ ++G++G GK+ LL +  +   ++   +S +T+G++     IQ+  K    +   +WD
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWD 60
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAK-HLTYENVERWLRELRDHADQNIVIML 121
            AG+E + +    +       L VYD++K     +  + WL  ++  A  + VI++
Sbjct: 61  FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILV 116

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
          +++ +G    GK+ +L +    + ++ +  T+G    T    V  K +K  +WD  GQ++
Sbjct: 2  RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDK 56
Query: 73 YRAITSAYYRGAVGALLVYDIA 94
           R +   YY G  G + V D A
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCA 78

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 13  KVVLIGDSGVGKSNLLSRFTR---NEFNLESKSTIGVEFATRSIQVDQKTIK---AQIWD 66
           K+ ++G++G GK+ LL +  +   ++   +S +T+G++     IQ+  K  +     +WD
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAK-HLTYENVERWLRELRDHADQNIVIML 121
            AG+E + +    +       L VYD++K     +  + WL  ++  A  + VI++
Sbjct: 63  FAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILV 118

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G    GK+ +L +    E  + +  TIG    T    V+ K I   +WD  GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 72 RYRAITSAYYRGAVGALLVYD 92
          R R +   Y++   G + V D
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVD 93

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            +++++G    GK+ +L +F   + +  S  T+G    T    ++ +  K  IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDIDTIS-PTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLREL 109
             R+    Y+    G + V D A     ++ +R L+ L
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 109

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G    GK+ +L +    + ++ +  T+G    T    V  K +K  +WD  G +
Sbjct: 3  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 57
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
          + R +   YY G  G + V D A
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCA 80

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G  G GK+ +L R    E  + +K TIG    T S     K +K  +WD  GQ 
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQT 73
Query: 72 RYRAITSAYYRGAVGALLVYD 92
            R     YY      + V D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVD 94

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++++G    GK+ +L +    + ++ +  T+G    T    V  K +K  +WD  G +
Sbjct: 4  MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET----VTYKNVKFNVWDVGGLD 58
Query: 72 RYRAITSAYYRGAVGALLVYDIA 94
          + R +   YY G  G + V D A
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCA 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-107
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-105
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-105
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-105
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-104
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-104
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-104
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-104
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-103
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-103
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-103
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-102
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-102
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-102
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-102
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-101
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-101
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-101
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-100
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-100
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-100
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-100
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-99
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-99
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	3e-99
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-99
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	7e-99
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	8e-99
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	9e-99
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-98
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-98
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	5e-98
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-98
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-96
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-95
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-92
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-92
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-83
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-78
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-75
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-74
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-71
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-71
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-70
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	4e-69
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	8e-69
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-66
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-66
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-66
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	9e-66
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-65
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-60
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-60
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-59
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-58
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	4e-58
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	7e-58
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-56
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-56
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-55
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-55
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-55
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-52
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	9e-49
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-48
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-42
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-38
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-37
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-36
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	7e-36
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-35
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-34
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	4e-34
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	6e-34
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-33
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-33
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	7e-33
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-32
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	7e-32
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-17
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-09
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-08
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-08
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	5e-08
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-07
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-07
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-07
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-07
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-07
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-07
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-07
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	7e-07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	7e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-05
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	6e-05
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  306 bits (785), Expect = e-107
 Identities = 158/221 (71%), Positives = 162/221 (73%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           MGTR+DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTI
Sbjct: 19  MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAG ERYRAITSAYYRGAVGALLVYDIAKHLT                      
Sbjct: 79  KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---------------------- 116

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                        YENVERWL+ELRDHAD NIVIMLVGNKSDLR
Sbjct: 117 -----------------------------YENVERWLKELRDHADSNIVIMLVGNKSDLR 147

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           HLRAVP DEA+ FAE+N LSFIETSALDSTNVE AFQ ILT
Sbjct: 148 HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  302 bits (776), Expect = e-105
 Identities = 117/223 (52%), Positives = 144/223 (64%), Gaps = 53/223 (23%)

Query: 1   MGTR--EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK 58
           M +     +YD LFK+VLIGDSGVGKSNLLSRFT+NEFN++SKSTIGVEFATR+++++ K
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 59  TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV 118
            IKAQIWDTAGQERYRAITSAYYRGAVGAL+VYDI+K  +                    
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS-------------------- 100

Query: 119 IMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSD 178
                                          YEN   WL ELR++AD N+ + L+GNKSD
Sbjct: 101 -------------------------------YENCNHWLSELRENADDNVAVGLIGNKSD 129

Query: 179 LRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           L HLRAVP +E+KTFA+ N L F ETSAL+S NV+ AF+ ++ 
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELIN 172

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  299 bits (769), Expect = e-105
 Identities = 88/221 (39%), Positives = 111/221 (50%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
             T    Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V  + I
Sbjct: 5   SATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 64

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K QIWDTAGQER+RA+T +YYRGA GAL+VYDI +  T                      
Sbjct: 65  KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---------------------- 102

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                        Y ++  WL + R+  + N VI+L+GNK+DL 
Sbjct: 103 -----------------------------YNHLSSWLTDARNLTNPNTVIILIGNKADLE 133

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
             R V  +EAK FAE N L F+E SA    NVE AF     
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 174

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  299 bits (769), Expect = e-105
 Identities = 88/220 (40%), Positives = 109/220 (49%), Gaps = 51/220 (23%)

Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G   + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K +K
Sbjct: 1   GHMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 60

Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
            QIWDTAGQER+R++T +YYRGA GALLVYDI    T                       
Sbjct: 61  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET----------------------- 97

Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
                                       Y  +  WL + R  A QNIVI+L GNK DL  
Sbjct: 98  ----------------------------YNALTNWLTDARMLASQNIVIILCGNKKDLDA 129

Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
            R V   EA  FA+ N L F+ETSAL   NVE AF     
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR 169

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  299 bits (767), Expect = e-104
 Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           +    ++Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ +    +
Sbjct: 15  VPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV 74

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH T                      
Sbjct: 75  KAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---------------------- 112

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                        Y  VERWL+EL DHA+  IV+MLVGNKSDL 
Sbjct: 113 -----------------------------YAVVERWLKELYDHAEATIVVMLVGNKSDLS 143

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
             R VP +EA+ FAE N L F+ETSALDSTNVE AF+ +L 
Sbjct: 144 QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLK 184

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  299 bits (767), Expect = e-104
 Identities = 153/214 (71%), Positives = 157/214 (73%), Gaps = 51/214 (23%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQERYR ITSAYYRGAVGALLVYDIAKHLT                             
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLT----------------------------- 92

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                 YENVERWL+ELRDHAD NIVIMLVGNKSDLRHLRAVP 
Sbjct: 93  ----------------------YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT 130

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 131 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 164

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  297 bits (763), Expect = e-104
 Identities = 86/217 (39%), Positives = 107/217 (49%), Gaps = 51/217 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
               D+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R + V  KT+K QI
Sbjct: 19  SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQI 78

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER+R++T +YYRGA GALLVYDI    T                          
Sbjct: 79  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRET-------------------------- 112

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                    Y ++  WL + R  A  NIV++L GNK DL   R 
Sbjct: 113 -------------------------YNSLAAWLTDARTLASPNIVVILCGNKKDLDPERE 147

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           V   EA  FA+ N L F+ETSAL   NVE AF     
Sbjct: 148 VTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 184

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  297 bits (763), Expect = e-104
 Identities = 86/216 (39%), Positives = 120/216 (55%), Gaps = 51/216 (23%)

Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
            EYDYLFK++LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++++D KT+K QIW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 66  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
           DTAGQER+R ITS+YYRG+ G ++VYD+    +                           
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQES--------------------------- 95

Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
                                   +  V+ WL+E+  +A   ++ +LVGNK DL+  R V
Sbjct: 96  ------------------------FNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVV 131

Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
             D AK FA+ N + F+ETSALDSTNVE AF  +  
Sbjct: 132 EYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 167

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  294 bits (756), Expect = e-103
 Identities = 87/221 (39%), Positives = 119/221 (53%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           M +   EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTI
Sbjct: 6   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K QIWDTAGQER+R ITS+YYRGA G ++VYD+    +                      
Sbjct: 66  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---------------------- 103

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                        + NV++WL+E+  +A +N+  +LVGNK DL 
Sbjct: 104 -----------------------------FNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
             + V    AK FA+   + F+ETSA ++TNVE +F  +  
Sbjct: 135 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 175

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  294 bits (754), Expect = e-103
 Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 51/220 (23%)

Query: 3   TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKA 62
                     K+VL+GD G GKS+L+ RF +++F    +STIG  F ++++ V+  T+K 
Sbjct: 4   AAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKF 63

Query: 63  QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 122
           +IWDTAGQERY ++   YYRGA  A++V+D+    +                        
Sbjct: 64  EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS------------------------ 99

Query: 123 GPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHL 182
                                      +E  ++W++EL+   + N+V+ L GNKSDL   
Sbjct: 100 ---------------------------FERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132

Query: 183 RAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           R V A++A+T+A+ N L F+ETSA  +TNV+  F  I   
Sbjct: 133 RKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR 172

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  294 bits (755), Expect = e-103
 Identities = 86/217 (39%), Positives = 108/217 (49%), Gaps = 51/217 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
                YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D K IK QI
Sbjct: 15  VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQI 74

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQE +R+IT +YYRGA GALLVYDI +  T                          
Sbjct: 75  WDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------------------------- 108

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                    + ++  WL + R H+  N+VIML+GNKSDL   R 
Sbjct: 109 -------------------------FNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD 143

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           V  +E + FA  + L F+ETSA  + NVE AF N   
Sbjct: 144 VKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  293 bits (752), Expect = e-102
 Identities = 87/221 (39%), Positives = 119/221 (53%), Gaps = 51/221 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
           M +   EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+I++D KTI
Sbjct: 23  MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 82

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K QIWDTAGQER+R ITS+YYRGA G ++VYD+    +                      
Sbjct: 83  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---------------------- 120

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                        + NV++WL+E+  +A +N+  +LVGNK DL 
Sbjct: 121 -----------------------------FNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
             + V    AK FA+   + F+ETSA ++TNVE +F  +  
Sbjct: 152 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 192

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  293 bits (752), Expect = e-102
 Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 52/222 (23%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
            G  +++YD+LFK+VL+GD+ VGK+ ++ RF    F+    STIGV+F  +++++  K +
Sbjct: 19  SGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV 78

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K QIWDTAGQER+R IT +YYR A GA+L YDI K  +                      
Sbjct: 79  KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---------------------- 116

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                        + +V  W+ ++R +A  NIV +L+GNKSDL 
Sbjct: 117 -----------------------------FLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147

Query: 181 HLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILT 221
            LR V   EA++ AE  + L  IETSA DS+NVE AF  + T
Sbjct: 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  292 bits (750), Expect = e-102
 Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 51/217 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
            ++YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + +K QI
Sbjct: 20  MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER+R+IT +YYR A   +L YDI    +                          
Sbjct: 80  WDTAGQERFRSITQSYYRSANALILTYDITCEES-------------------------- 113

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                    +  +  WLRE+  +A   ++ +LVGNK DL   R 
Sbjct: 114 -------------------------FRCLPEWLREIEQYASNKVITVLVGNKIDLAERRE 148

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           V    A+ F+E  ++ ++ETSA +S NVE  F ++  
Sbjct: 149 VSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 185

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  292 bits (750), Expect = e-102
 Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 51/217 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
              +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  ++I  + K IK QI
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAG ERYR IT+AYYRGA+G +L+YDI    +                          
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEES-------------------------- 95

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                    +  V+ W  +++ ++  N  ++LVGNK D+   R 
Sbjct: 96  -------------------------FNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 130

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           V ++  +  A+     F E SA D+ NV+  F+ ++ 
Sbjct: 131 VSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 167

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  289 bits (742), Expect = e-101
 Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 49/216 (22%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-TIKAQIWD 66
           +    K+V++GD   GK++L + F +  F  + K TIG++F  R I +     +  QIWD
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
             GQ     +   Y  GA G LLVYDI  + ++EN+E W                     
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTV------------------ 104

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                         ++++ + ++   ++ LVGNK DL H+R + 
Sbjct: 105 ------------------------------VKKVSEESETQPLVALVGNKIDLEHMRTIK 134

Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
            ++   F + N  S    SA    +V   FQ +   
Sbjct: 135 PEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAE 170

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  289 bits (742), Expect = e-101
 Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 52/221 (23%)

Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTI 60
           G+  D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + + VD   +
Sbjct: 1   GSGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV 60

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K Q+WDTAGQER+R++T AYYR A   LL+YD+    +                      
Sbjct: 61  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---------------------- 98

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                        ++N++ WL E+ ++A  ++ +ML+GNK D  
Sbjct: 99  -----------------------------FDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           H R V  ++ +  A+   L F+ETSA    NV+ AF  I  
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  289 bits (742), Expect = e-101
 Identities = 71/220 (32%), Positives = 108/220 (49%), Gaps = 51/220 (23%)

Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G      DY+FK++LIG+S VGK++ L R+  + F     ST+G++F  +++    K IK
Sbjct: 13  GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIK 72

Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
            QIWDTAGQERYR IT+AYYRGA+G LL+YDIA   +                       
Sbjct: 73  LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES----------------------- 109

Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
                                       +  V+ W  +++ ++  N  ++LVGNK DL  
Sbjct: 110 ----------------------------FAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141

Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
            R VPA++ +  A+     F E SA ++ NV+  F+ ++ 
Sbjct: 142 ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD 181

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  288 bits (740), Expect = e-100
 Identities = 75/217 (34%), Positives = 111/217 (51%), Gaps = 52/217 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
             +YD+LFK+++IGDSGVGKS+LL RF  N F+    +TIGV+F  R+++++ + +K QI
Sbjct: 3   ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER+R ITS YYRG  G ++VYD+    ++ NV+RWL E+  + D          
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---------- 112

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                                     ++  +LVGNK+D    + 
Sbjct: 113 ------------------------------------------DVCRILVGNKNDDPERKV 130

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           V  ++A  FA +  +   ETSA ++ NVE  F  I  
Sbjct: 131 VETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE 167

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  287 bits (738), Expect = e-100
 Identities = 79/217 (36%), Positives = 112/217 (51%), Gaps = 51/217 (23%)

Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
             YDYLFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  R+I++D K IK QIW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 66  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
           DTAGQER+R IT+AYYRGA+G +LVYDI    +                           
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKS--------------------------- 95

Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
                                   ++N+  W+R + +HA  ++  M++GNK D+   R V
Sbjct: 96  ------------------------FDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQV 131

Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
             +  +  A    + F+ETSA  + NVE AF  +   
Sbjct: 132 SKERGEKLALDYGIKFMETSAKANINVENAFFTLARD 168

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  287 bits (737), Expect = e-100
 Identities = 74/217 (34%), Positives = 109/217 (50%), Gaps = 51/217 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
           +++     K+++IG+SGVGKS+LL RFT + F+ E  +TIGV+F  ++I VD    K  I
Sbjct: 9   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER+R +T +YYRGA G +LVYD+ +  T+  ++ WL EL  +  +N        
Sbjct: 69  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN-------- 120

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                                     +IV MLVGNK D    R 
Sbjct: 121 ------------------------------------------DIVNMLVGNKIDK-ENRE 137

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           V  +E   FA ++++ FIE SA     V+ AF+ ++ 
Sbjct: 138 VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 174

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  285 bits (733), Expect = e-100
 Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 51/215 (23%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
             Y FKVVL+G+  VGK++L+ R+  N+FN +  +T+G  F T+ + +  K +   IWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQER+ A+   YYR + GA+LVYDI    +                             
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDS----------------------------- 93

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                 ++ V+ W++ELR      I + +VGNK DL   R V  
Sbjct: 94  ----------------------FQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI 131

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
            EA+++AE        TSA  +  +E  F ++   
Sbjct: 132 QEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR 166

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  286 bits (734), Expect = 1e-99
 Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 51/217 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
           +  +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  +++   +K +K QI
Sbjct: 17  QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQERYR IT+AYYRGA+G +L+YDI    +                          
Sbjct: 77  WDTAGQERYRTITTAYYRGAMGFILMYDITNEES-------------------------- 110

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                    +  V+ W  +++ ++  N  ++LVGNK D+   R 
Sbjct: 111 -------------------------FNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERV 145

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           VP ++ +  AE+    F E SA ++ +V  AF+ ++ 
Sbjct: 146 VPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  286 bits (734), Expect = 1e-99
 Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 52/219 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
               D+  +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++++  K I+ QI
Sbjct: 20  PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER+ +ITSAYYR A G +LVYDI K  T                          
Sbjct: 80  WDTAGQERFNSITSAYYRSAKGIILVYDITKKET-------------------------- 113

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                    ++++ +W++ +  +A ++  ++LVGNK D    R 
Sbjct: 114 -------------------------FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDRE 148

Query: 185 VPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
           +   + + FA++   + F E SA D+ NV+  F  ++  
Sbjct: 149 ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD 187

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  285 bits (732), Expect = 3e-99
 Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 51/218 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
                   KV L+GD+GVGKS+++ RF ++ F+     TIG  F T+++    +  K  I
Sbjct: 17  RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER+ ++   YYRG+  A++VYDI K  +                          
Sbjct: 77  WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS-------------------------- 110

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                    +  +++W++EL++H  +NIV+ + GNK DL  +R 
Sbjct: 111 -------------------------FYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIRE 145

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           VP  +AK +AE      +ETSA ++ N+E  FQ I   
Sbjct: 146 VPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ 183

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  284 bits (730), Expect = 6e-99
 Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 60/227 (26%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ------- 57
           + +YDYL K + +GDSGVGK+++L ++T  +FN +  +T+G++F  + +           
Sbjct: 5   DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAV 64

Query: 58  ---KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 114
              + I  Q+WDTAG ER+R++T+A++R A+G LL++D+    ++ NV  W+ +L+ HA 
Sbjct: 65  GRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 124

Query: 115 QNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 174
                                                              +N  I+L G
Sbjct: 125 --------------------------------------------------SENPDIVLCG 134

Query: 175 NKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           NKSDL   RAV  +EA+  AE+  + + ETSA + TN+  A + +L 
Sbjct: 135 NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  285 bits (731), Expect = 7e-99
 Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 52/217 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
              YD + K++LIGDSGVGKS LL RF  ++FN    +TIG++F  +++ ++ K +K Q+
Sbjct: 14  GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER+R IT+AYYRGA+G +LVYD+    T                          
Sbjct: 74  WDTAGQERFRTITTAYYRGAMGIILVYDVTDERT-------------------------- 107

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                                    + N+++W + + +HA+    ++LVGNKSD+   R 
Sbjct: 108 -------------------------FTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRV 141

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           V AD+ +  A+   + FIE+SA +  NV   F  +  
Sbjct: 142 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  284 bits (730), Expect = 8e-99
 Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 51/221 (23%)

Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G         FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++
Sbjct: 7   GGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 66

Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
            Q+WDTAG ER+R++  +Y R +  A++VYDI    +                       
Sbjct: 67  LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNS----------------------- 103

Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
                                       ++   +W+ ++R     +++IMLVGNK+DL  
Sbjct: 104 ----------------------------FQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 135

Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
            R V  +E +  A+  N+ FIETSA    NV+  F+ +  A
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 176

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  283 bits (726), Expect = 9e-99
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 52/215 (24%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
            +   K+V++G+  VGKS+++ R+ +  F  + K TIGV+F  R IQV+ + ++  +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQE + AIT AYYRGA   +LV+      ++E +  W  ++                  
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG------------- 108

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                  +I   LV NK DL     +  
Sbjct: 109 ---------------------------------------DIPTALVQNKIDLLDDSCIKN 129

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           +EA+  A+R  L F  TS  +  NV   F+ +   
Sbjct: 130 EEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  284 bits (729), Expect = 2e-98
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 60/227 (26%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK------ 58
             +YDYL K++ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +  + +      
Sbjct: 19  SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78

Query: 59  ----TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD 114
                +  Q+WDTAGQER+R++T+A++R A+G LL++D+    ++ NV  W+ +L+ +A 
Sbjct: 79  GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138

Query: 115 QNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 174
                                                              +N  I+L+G
Sbjct: 139 --------------------------------------------------CENPDIVLIG 148

Query: 175 NKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           NK+DL   R V   +A+  A++  + + ETSA    NVE A + +L 
Sbjct: 149 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 195

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  282 bits (725), Expect = 2e-98
 Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 51/211 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KV L+GD+GVGKS+++ RF  + F+     TIG  F T+++Q   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+RA+   YYRG+  A++VYDI K  T                                 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEET--------------------------------- 93

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                             +  ++ W+RELR H   +IV+ + GNK DL  +R V   +AK
Sbjct: 94  ------------------FSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 135

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
            +A+  +  F+ETSA ++ N+   F  I   
Sbjct: 136 DYADSIHAIFVETSAKNAININELFIEISRR 166

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  282 bits (723), Expect = 5e-98
 Identities = 65/221 (29%), Positives = 100/221 (45%), Gaps = 54/221 (24%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
                 +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ +D + IK Q+
Sbjct: 14  RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73

Query: 65  WDTAGQERYR-AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           WDTAGQER+R ++   YYR     + VYD+    ++ ++  W+ E + H   N       
Sbjct: 74  WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN------- 126

Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183
                                                      +I  +LVGNK DLR   
Sbjct: 127 -------------------------------------------DIPRILVGNKCDLRSAI 143

Query: 184 AVPADEAKTFAERNNLSFIETSAL---DSTNVETAFQNILT 221
            VP D A+ FA+ +++   ETSA    D+ +VE  F  +  
Sbjct: 144 QVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  282 bits (724), Expect = 7e-98
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 47/216 (21%)

Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIW 65
                L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ + VD + +  QIW
Sbjct: 3   SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62

Query: 66  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPP 125
           DTAGQER++++  A+YRGA   +LV+D+    T++ ++ W  E    A            
Sbjct: 63  DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP---------- 112

Query: 126 SLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV 185
                                                   +N   +++GNK DL + +  
Sbjct: 113 -------------------------------------RDPENFPFVVLGNKIDLENRQVA 135

Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
                     +NN+ + ETSA ++ NVE AFQ I  
Sbjct: 136 TKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  280 bits (719), Expect = 1e-97
 Identities = 75/213 (35%), Positives = 108/213 (50%), Gaps = 51/213 (23%)

Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
             FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QERY ++   YYRGA  A++VYDI    +                               
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEES------------------------------- 93

Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                               +   + W++EL+  A  NIVI L GNK+DL + RAV   E
Sbjct: 94  --------------------FARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQE 133

Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           A+++A+ N+L F+ETSA  S NV   F  I   
Sbjct: 134 AQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  280 bits (718), Expect = 2e-97
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 51/221 (23%)

Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
                     FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++
Sbjct: 5   SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 64

Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
            Q+WDTAGQER+R++  +Y R +  A++VYDI    +                       
Sbjct: 65  LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS----------------------- 101

Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
                                       +    +W+ ++R     +++IMLVGNK+DL  
Sbjct: 102 ----------------------------FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133

Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
            R V  +E +  A+  N+ FIETSA    NV+  F+ +  A
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 174

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  280 bits (718), Expect = 2e-97
 Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 49/216 (22%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
               LFKV+L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + ++VD   +  QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R++ + +YRG+   LL + +    +++N+  W +E   +AD            
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK---------- 112

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                  ++   +++GNK D+   R V 
Sbjct: 113 -------------------------------------EPESFPFVILGNKIDISE-RQVS 134

Query: 187 ADEAKTFAERN-NLSFIETSALDSTNVETAFQNILT 221
            +EA+ +   N +  + ETSA D+TNV  AF+  + 
Sbjct: 135 TEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  280 bits (718), Expect = 4e-97
 Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 57/227 (25%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
              +       +K+VL GD+ VGKS+ L R  +NEF     +T+GV+F  +++ VD +  
Sbjct: 18  GSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERT 77

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             Q+WDTAGQER+R+I  +Y+R A G LL+YD+    +                      
Sbjct: 78  VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---------------------- 115

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                        + N+  W+  + D A + + IMLVGNK+D+R
Sbjct: 116 -----------------------------FLNIREWVDMIEDAAHETVPIMLVGNKADIR 146

Query: 181 HL------RAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
                   + VP    +  A      F ETSA D +N+  A  ++  
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  278 bits (712), Expect = 6e-96
 Identities = 45/218 (20%), Positives = 79/218 (36%), Gaps = 52/218 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE-FATRSIQVDQKTIKAQ 63
            +  +  +K+ LIGD GVGK+  ++R     F     +T+G        +      IK  
Sbjct: 5   MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64

Query: 64  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           +WDTAGQE+   +                                               
Sbjct: 65  VWDTAGQEKKAVLKDV-------------------------------------------- 80

Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183
                  YY GA GA+L +D+   +T +N+ RW++E +        I++  NK D+++ +
Sbjct: 81  -------YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ 133

Query: 184 AVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
            +         +  N  + E SA  + N    F ++  
Sbjct: 134 KISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  275 bits (705), Expect = 2e-95
 Identities = 74/213 (34%), Positives = 110/213 (51%), Gaps = 52/213 (24%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           D + K++LIGDSGVGKS LL RF  ++FN    +TIG++F  +++ ++ K +K QIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R IT+AYYRGA+G +LVYDI    T                              
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERT------------------------------ 90

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                + N+++W + + +HA+    ++LVGNKSD+   R V AD
Sbjct: 91  ---------------------FTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTAD 128

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           + +  A+   + FIE+SA +  NV   F  +  
Sbjct: 129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  275 bits (706), Expect = 3e-95
 Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 54/223 (24%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTR--NEFNLESKSTIGVEFATRSIQVDQKTIKA 62
           +       KV ++G++ VGKS L+S FT   ++F  +   T GVE     + +   T+  
Sbjct: 14  DITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73

Query: 63  QIW--DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           +++  DTAG + Y+   S Y+ G   A+LV+D++   ++E+ + W   L+          
Sbjct: 74  ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA-------- 125

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                                   R   ++ +  +LV NK+DL 
Sbjct: 126 ----------------------------------------RPDRERPLRAVLVANKTDLP 145

Query: 181 HLR-AVPADEAKTFAERNNLSFIETSA-LDSTNVETAFQNILT 221
             R  V  D A+ +A  N L F + SA     + +  F +I T
Sbjct: 146 PQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  267 bits (685), Expect = 3e-92
 Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 50/219 (22%)

Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQI 64
                + KV+++GDSGVGK++L+ R+  ++++ + K+TIG +F T+ + VD  K    Q+
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER++++  A+YRGA   +LVYD+    ++EN++ W  E   HA+ N        
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN-------- 114

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHL-R 183
                                                  + +    +++GNK D     +
Sbjct: 115 ---------------------------------------SPETFPFVILGNKIDAEESKK 135

Query: 184 AVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILT 221
            V    A+  A+   ++    TSA ++ NV+TAF+ I  
Sbjct: 136 IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  268 bits (687), Expect = 4e-92
 Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 54/221 (24%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
               + E    FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  I
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           K  +WDTAGQE++  +   YY  A  A++++D+   +TY+NV  W R+L    +      
Sbjct: 65  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE------ 118

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                                         NI I+L GNK D++
Sbjct: 119 ----------------------------------------------NIPIVLCGNKVDIK 132

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
             +     ++  F  + NL + + SA  + N E  F  +  
Sbjct: 133 DRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  245 bits (627), Expect = 4e-83
 Identities = 64/253 (25%), Positives = 97/253 (38%), Gaps = 91/253 (35%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKA---- 62
           E    +K VL+G+S VGKS+++ R T++ F+  + +TIG  F T  + ++   IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 63  ---------------------------------QIWDTAGQERYRAITSAYYRGAVGALL 89
                                             IWDTAGQERY +I   YYRGA  A++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 90  VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLT 149
           V+DI+   T +  + W+ +L+                                       
Sbjct: 123 VFDISNSNTLDRAKTWVNQLK--------------------------------------- 143

Query: 150 YENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDS 209
                            N +I+LV NK D      V   E + +A+ NNL FI+TSA   
Sbjct: 144 --------------ISSNYIIILVANKIDKNK-FQVDILEVQKYAQDNNLLFIQTSAKTG 188

Query: 210 TNVETAFQNILTA 222
           TN++  F  +   
Sbjct: 189 TNIKNIFYMLAEE 201

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  232 bits (593), Expect = 4e-78
 Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 51/221 (23%)

Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
              + + D +FKV+L+G+SGVGKS L   F   + +   +     +   R I VD++ + 
Sbjct: 14  LYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVT 73

Query: 62  AQIWDTAGQERYRA-ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
             ++D   Q      +     +     L+V+ +    ++  V   L  LR          
Sbjct: 74  LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR---------- 123

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                                         ++ ++LVGNKSDL 
Sbjct: 124 ----------------------------------------AGRPHHDLPVILVGNKSDLA 143

Query: 181 HLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
             R V  +E +  A   +   IETSA    N    F+  + 
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  224 bits (572), Expect = 2e-75
 Identities = 65/214 (30%), Positives = 96/214 (44%), Gaps = 54/214 (25%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K+VL+G++ VGKS+++ RF  N+F    + TIG  F T+ + +++ T+K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+ ++   YYR A  AL+VYD+ K  +                                 
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQS--------------------------------- 90

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHL---RAVPAD 188
                             +     W++EL + A ++I+I LVGNK D       R V  +
Sbjct: 91  ------------------FIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVARE 132

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           E +  AE   L F ETSA    NV   F  I   
Sbjct: 133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK 166

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  221 bits (566), Expect = 2e-74
 Identities = 44/211 (20%), Positives = 73/211 (34%), Gaps = 51/211 (24%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           +FKV+L+G+SGVGKS L   F   + +   +     +   R I VD++ +   ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 71  ERYRA-ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
                 +     +     L+V+ +    ++  V   L  LR                   
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR------------------- 102

Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                ++ ++LVGNKSDL   R V  +E
Sbjct: 103 -------------------------------AGRPHHDLPVILVGNKSDLARSREVSLEE 131

Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            +  A   +   IETSA    N    F+  +
Sbjct: 132 GRHLAGTLSCKHIETSAALHHNTRELFEGAV 162

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  214 bits (548), Expect = 2e-71
 Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 53/213 (24%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L++VVL+GD GVGK++L S F   +   +    +G +   R++ VD +     + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQE-RDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 71  ERYRAITS--AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           E+     S  +  +G    ++VY IA   ++E+      +L                   
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL------------------- 103

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                           R H   ++ I+LVGNK+DL   R V  +
Sbjct: 104 -------------------------------RRTHQADHVPIILVGNKADLARCREVSVE 132

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           E +  A   +  FIETSA    NV   F+ ++ 
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  214 bits (547), Expect = 3e-71
 Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 51/219 (23%)

Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G        L KV+++G  GVGKS L  +F  +EF  + + T    +  + + +D + ++
Sbjct: 9   GGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQ 67

Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
             I DTAGQE Y AI   Y+R   G L V+ I +  ++     +  ++            
Sbjct: 68  IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI------------ 115

Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
                                                 LR   D+N+  +LVGNKSDL  
Sbjct: 116 --------------------------------------LRVKEDENVPFLLVGNKSDLED 137

Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            R V  +EAK  AE+ N++++ETSA    NV+  F +++
Sbjct: 138 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  212 bits (541), Expect = 5e-70
 Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 51/217 (23%)

Query: 4   REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ 63
           +      L KV+++G  GVGKS L  +F  +EF  + + T    +  + + +D + ++  
Sbjct: 7   KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQID 65

Query: 64  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           I DTAGQE Y AI   Y+R   G L V+ I +  ++     +  ++              
Sbjct: 66  ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI-------------- 111

Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR 183
                                               LR   D+N+  +LVGNKSDL   R
Sbjct: 112 ------------------------------------LRVKEDENVPFLLVGNKSDLEDKR 135

Query: 184 AVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            V  +EAK  AE+ N++++ETSA    NV+  F +++
Sbjct: 136 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  209 bits (535), Expect = 4e-69
 Identities = 52/225 (23%), Positives = 85/225 (37%), Gaps = 56/225 (24%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKT 59
                +  +  ++VVLIG+ GVGKS L + F     +++S    +G +   R++ VD ++
Sbjct: 27  SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86

Query: 60  ---IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
              I   +W+  G+  +  +     +     L+VY I    ++E       +LR      
Sbjct: 87  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR------ 138

Query: 117 IVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNK 176
                                                       R    ++I I+LVGNK
Sbjct: 139 --------------------------------------------RARQTEDIPIILVGNK 154

Query: 177 SDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           SDL   R V   E +  A   +  FIETSA    NV+  F+ I+ 
Sbjct: 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  207 bits (529), Expect = 8e-69
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 51/210 (24%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++G  GVGKS L  +F  +EF  + + T    +  + + +D + ++  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           E Y AI   Y+R   G L V+ I +  ++     +  ++                     
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI--------------------- 101

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                        LR   D+N+  +LVGNKSDL   R V  +EA
Sbjct: 102 -----------------------------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 132

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNIL 220
           K  A++ N++++ETSA    NV+  F +++
Sbjct: 133 KNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  202 bits (516), Expect = 1e-66
 Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 51/214 (23%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
                 K+V++G  GVGKS L  +F ++ F  +   TI   + T+   VD    +  I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILD 63

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQE + A+   Y R   G LLV+ I    ++  V +   ++                 
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI----------------- 106

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                            LR     +  ++LVGNK+DL   R VP
Sbjct: 107 ---------------------------------LRVKDRDDFPVVLVGNKADLESQRQVP 133

Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
             EA  F   +++++ E SA    NV+ AF+ ++
Sbjct: 134 RSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  202 bits (517), Expect = 1e-66
 Identities = 45/213 (21%), Positives = 83/213 (38%), Gaps = 51/213 (23%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
                KVV++G   VGK++L  +F   EF+     T+   + ++ + + +      + DT
Sbjct: 21  LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDT 79

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQ+ Y  +  ++  G  G +LVY +    +++ +E   ++L                  
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL------------------ 121

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                              H    + ++LVGNK+DL   R V A
Sbjct: 122 --------------------------------HEGHGKTRVPVVLVGNKADLSPEREVQA 149

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            E K  AE    +F+E+SA ++   +  F  ++
Sbjct: 150 VEGKKLAESWGATFMESSARENQLTQGIFTKVI 182

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  202 bits (515), Expect = 2e-66
 Identities = 34/220 (15%), Positives = 76/220 (34%), Gaps = 60/220 (27%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNL--ESKSTIGVEFATRSIQVDQK---TIKAQIWD 66
            K++++G++G GK+ LL +  + + +      +T+G++     IQ+  K    +   +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
            AG+E + +    +       L VYD++K                               
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSK------------------------------- 91

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL---RHLR 183
                                   + ++ WL  ++  A  +  ++LVG   D+   +  +
Sbjct: 92  -------------------GQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRK 131

Query: 184 AVPADEAKTFAERNNLSFI-ETSALDSTNVETAFQNILTA 222
           A  +   K    +     I +   +++T    A   +   
Sbjct: 132 ACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  199 bits (509), Expect = 9e-66
 Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 52/210 (24%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           ++KV+L+G  GVGKS L   F   E   E+    G  +  RSI VD +     ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           +  R +           ++VY +    ++E       +LR                    
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA------------------ 101

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                               ++ I+LVGNKSDL   R V  DE 
Sbjct: 102 --------------------------------RQTDDVPIILVGNKSDLVRSREVSVDEG 129

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +  A   +  FIETSA    NV+  F+ ++
Sbjct: 130 RACAVVFDCKFIETSAALHHNVQALFEGVV 159

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  199 bits (509), Expect = 2e-65
 Identities = 52/220 (23%), Positives = 84/220 (38%), Gaps = 56/220 (25%)

Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKT---IK 61
           +     ++VVLIG+ GVGKS L + F     +++S    +G +   R++ VD ++   I 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
             +W+  G+  +  +     +     L+VY I    ++E       +LR           
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR----------- 107

Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
                                                  R    ++I I+LVGNKSDL  
Sbjct: 108 ---------------------------------------RARQTEDIPIILVGNKSDLVR 128

Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
            R V   E +  A   +  FIETSA    NV+  F+ I+ 
Sbjct: 129 XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  186 bits (476), Expect = 1e-60
 Identities = 52/213 (24%), Positives = 79/213 (37%), Gaps = 51/213 (23%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
                K+ ++G   VGKS+L  +F   +F      TI   F T+ I V+ +    Q+ DT
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDT 61

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQ+ Y      Y     G +LVY +    ++E ++    +L                  
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL------------------ 103

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                           L       I IMLVGNK DL   R +  
Sbjct: 104 --------------------------------LDMVGKVQIPIMLVGNKKDLHMERVISY 131

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +E K  AE  N +F+E+SA ++      F+ I+
Sbjct: 132 EEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  186 bits (476), Expect = 1e-60
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 52/215 (24%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           E    +K+V++GD GVGKS L  +F +  F  +   TI   +  +  ++D +     + D
Sbjct: 14  ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLD 72

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQE + A+   Y R   G L+VY +    ++E+V+R+ + +    D            
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD------------ 120

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                  ++  ++LV NK DL HLR V 
Sbjct: 121 --------------------------------------RESFPMILVANKVDLMHLRKVT 142

Query: 187 ADEAKTFAERNNLSFIETSALDST-NVETAFQNIL 220
            D+ K  A + N+ +IETSA D   NV+  F +++
Sbjct: 143 RDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  185 bits (472), Expect = 1e-59
 Identities = 49/214 (22%), Positives = 79/214 (36%), Gaps = 51/214 (23%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           E    ++VV+ G  GVGKS+L+ RF +  F      TI   +  + I  D+     QI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           T G  ++ A+           +LV+ +    + E +    + +                 
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKG------------ 110

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                + ++I +MLVGNK D    R V 
Sbjct: 111 -------------------------------------SVEDIPVMLVGNKCDETQ-REVD 132

Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
             EA+  A+    +F+ETSA  + NV+  FQ +L
Sbjct: 133 TREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  181 bits (463), Expect = 1e-58
 Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 50/209 (23%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           ++V + G  GVGKS+L+ RF +  F      T+   +  + I  D+     QI DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+           +LVY I    + E ++    ++ +                    
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDV--------------- 107

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                             ++I IMLVGNK D    R V + EA+
Sbjct: 108 ----------------------------------ESIPIMLVGNKCDESPSREVQSSEAE 133

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A     +F+ETSA  + NV+  FQ +L
Sbjct: 134 ALARTWKCAFMETSAKLNHNVKELFQELL 162

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  179 bits (458), Expect = 4e-58
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 52/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L V+ I    ++E++ ++  +++   D                 
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD----------------- 105

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                              ++ ++LVGNKSDL   R V + +A+
Sbjct: 106 ---------------------------------SDDVPMVLVGNKSDLAA-RTVESRQAQ 131

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A    + +IETSA     VE AF  ++
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  179 bits (457), Expect = 7e-58
 Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 51/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +KVV++G  GVGKS L  +F    F  +   TI  +F  + I+VD      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ ++   Y +   G +LVY +    ++++++    ++                      
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQI---------------------- 100

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       +R    + + ++LVGNK DL   R V + E +
Sbjct: 101 ----------------------------IRVKRYEKVPVILVGNKVDLESEREVSSSEGR 132

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             AE     F+ETSA   T V+  F  I+
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  176 bits (448), Expect = 3e-56
 Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 58/219 (26%)

Query: 2   GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIK 61
           G+ E      +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T  
Sbjct: 1   GSTE------YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCL 53

Query: 62  AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 121
             I DTAGQE Y A+   Y R   G L V+ I    ++E++  +  ++            
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI------------ 101

Query: 122 VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH 181
                                                  R    +++ ++LVGNK DL  
Sbjct: 102 --------------------------------------KRVKDSEDVPMVLVGNKCDLPS 123

Query: 182 LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            R V   +A+  A    + FIETSA     V+ AF  ++
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  174 bits (445), Expect = 4e-56
 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 52/210 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  +   TI   +  + ++VD +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+   Y +   G  LVY I    T+ +++    ++                      
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---------------------- 100

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       LR    +++ ++LVGNK DL   R V  ++ +
Sbjct: 101 ----------------------------LRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ 132

Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
             A +  N +F+E+SA    NV   F +++
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  174 bits (444), Expect = 1e-55
 Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 52/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +T    I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L V+ I    ++ ++  +  +++   D                 
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD----------------- 123

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                              ++ ++LVGNK DL   R V   +A 
Sbjct: 124 ---------------------------------SDDVPMVLVGNKCDL-PTRTVDTKQAH 149

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A+   + FIETSA     VE AF  ++
Sbjct: 150 ELAKSYGIPFIETSAKTRQGVEDAFYTLV 178

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  174 bits (444), Expect = 2e-55
 Identities = 50/214 (23%), Positives = 74/214 (34%), Gaps = 53/214 (24%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
                K+ + G +GVGKS L+ RF    F  E   T+   +      +D + +  +I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDT 83

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQE        + R   G +LVYDI    ++E V      L                  
Sbjct: 84  AGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL------------------ 124

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                                                 +N+ ++LVGNK+DL H R V  
Sbjct: 125 --------------------------------DEIKKPKNVTLILVGNKADLDHSRQVST 152

Query: 188 DEAKTFAERNNLSFIETSA-LDSTNVETAFQNIL 220
           +E +  A     +F E SA     N+   F  + 
Sbjct: 153 EEGEKLATELACAFYECSACTGEGNITEIFYELC 186

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  173 bits (441), Expect = 4e-55
 Identities = 43/213 (20%), Positives = 70/213 (32%), Gaps = 51/213 (23%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
                + ++G  G GKS L  +F    F  E    +   + +    VD + +  ++ DTA
Sbjct: 19  PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTA 77

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
             +  R     Y   A   L+VY +    ++++   +L  L  HA               
Sbjct: 78  DLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA--------------- 121

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                ++I  +L+GNK D+   R V   
Sbjct: 122 ---------------------------------KETQRSIPALLLGNKLDMAQYRQVTKA 148

Query: 189 EAKTFAERNNLSFIETSA-LDSTNVETAFQNIL 220
           E    A R    F E SA LD  +V+  F   +
Sbjct: 149 EGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  175 bits (445), Expect = 3e-52
 Identities = 37/227 (16%), Positives = 63/227 (27%), Gaps = 63/227 (27%)

Query: 4   REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI--------QV 55
               +    KV LIGD   GK++LL +     F+ +   T G+   T+            
Sbjct: 34  EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD 93

Query: 56  DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ 115
           + K      WD  GQE   A    +   +   +L+ D     T  N   WLR +  +   
Sbjct: 94  ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGG- 149

Query: 116 NIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGN 175
                                                                 +++V N
Sbjct: 150 ---------------------------------------------------KSPVIVVMN 158

Query: 176 KSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           K D      +   +           F   S  +   VE+  +++ +A
Sbjct: 159 KIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  156 bits (398), Expect = 9e-49
 Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 60/211 (28%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KV ++G+   GKS L+ R+    +  + +S  G  F  + I VD ++    I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
             +     +       + V+ +   ++++ V  +   L    +                 
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN----------------- 116

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR--HLRAVPADE 189
                                               + ++LVG +  +   + R +    
Sbjct: 117 ---------------------------------ASEVPMVLVGTQDAISAANPRVIDDSR 143

Query: 190 AKTFAER-NNLSFIETSALDSTNVETAFQNI 219
           A+  +      ++ ET A    NVE  FQ++
Sbjct: 144 ARKLSTDLKRCTYYETCATYGLNVERVFQDV 174

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  155 bits (393), Expect = 4e-48
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 58/212 (27%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
             ++ ++GD+  GKS+L+ RF    +    + T   ++  + + VD +T    I + AG 
Sbjct: 7   ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQY-KKEMLVDGQTHLVLIREEAGA 64

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
              +     +   A   + V+ +    +++ V R   +                      
Sbjct: 65  PDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQ---------------------- 97

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG--NKSDLRHLRAVPAD 188
                                     L  LR      + + LVG  ++      R V   
Sbjct: 98  --------------------------LSSLRGEGRGGLALALVGTQDRISASSPRVVGDA 131

Query: 189 EAKTF-AERNNLSFIETSALDSTNVETAFQNI 219
            A+   A+    S+ ET A    NV+  FQ +
Sbjct: 132 RARALXADMKRCSYYETXATYGLNVDRVFQEV 163

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  140 bits (354), Expect = 6e-42
 Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 55/222 (24%)

Query: 4   REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQ 63
           + +      K+V++GD  VGK+ LL  F++ E       T+   F+   ++   +     
Sbjct: 16  KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILH 74

Query: 64  IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           +WDTAGQE Y  +    Y  +   LL + +    +++N+                     
Sbjct: 75  LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIS-------------------- 114

Query: 124 PPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH-- 181
                                          +W  E++ + D     +LVG K DLR   
Sbjct: 115 ------------------------------TKWEPEIKHYID-TAKTVLVGLKVDLRKDG 143

Query: 182 LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
              V   E     ++   +++IE S++    +   F+  +  
Sbjct: 144 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  130 bits (328), Expect = 3e-38
 Identities = 51/222 (22%), Positives = 83/222 (37%), Gaps = 63/222 (28%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V +GD  VGK+ LL  +T N F  +   T+   F+  ++ V+  T+   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQE 67

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y  +    YRGA   +L + +    +YENV                             
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVS---------------------------- 99

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
                                 ++W+ EL+ +A   + I+LVG K DLR           
Sbjct: 100 ----------------------KKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPG 136

Query: 182 LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
              +   + +   +     ++IE S+    NV+  F   +  
Sbjct: 137 AVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  129 bits (326), Expect = 1e-37
 Identities = 51/224 (22%), Positives = 78/224 (34%), Gaps = 65/224 (29%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KVVL+GD G GK++LL  F    F      T+   +    +QV  K +   IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y  +   +Y  A   LL +D+    +++N+                             
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIF---------------------------- 125

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
                                  RW  E+     + + I++VG K+DLR           
Sbjct: 126 ----------------------NRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRR 162

Query: 182 --LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
             L  V     +  A     ++++E SA    NV   FQ     
Sbjct: 163 NGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  125 bits (316), Expect = 3e-36
 Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 63/216 (29%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++ VD + +   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQE 68

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y                                LR L                      
Sbjct: 69  DYSR------------------------------LRPL---------------------S 77

Query: 132 YRGAVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGNKSDLR--------HL 182
           YRGA   +L + +    +YENV ++W+ ELR  A  N+ I+LVG K DLR        H 
Sbjct: 78  YRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHT 136

Query: 183 RAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQ 217
             + + + +   ++    ++IE S+    NV+  F 
Sbjct: 137 NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  124 bits (314), Expect = 7e-36
 Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 65/223 (29%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GD   GK+ LL  F+++EF      T+   +    I+VD K ++  +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           Y  +    Y      L+ + +    + EN+                              
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIP----------------------------- 116

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH----------- 181
                                E+W+ E++     N+ I+LV NK DLR            
Sbjct: 117 ---------------------EKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARM 154

Query: 182 -LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
               V  D+ +  A R     ++E SA     V   F+    A
Sbjct: 155 KQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  123 bits (311), Expect = 1e-35
 Identities = 52/227 (22%), Positives = 82/227 (36%), Gaps = 65/227 (28%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
               K+V++GD   GK+ LL  F++++F      T+  E     I+VD K ++  +WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQE Y  +    Y      L+ + I    + EN+                          
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP------------------------- 116

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH------- 181
                                    E+W  E++     N+ I+LVGNK DLR        
Sbjct: 117 -------------------------EKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRE 150

Query: 182 -----LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
                   V ++E +  A R +   ++E SA     V   F+    A
Sbjct: 151 LAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 197

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  121 bits (306), Expect = 1e-34
 Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 65/224 (29%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ VD K +   +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y  +    Y      L+ + +    ++ENV                             
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVR---------------------------- 121

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
                                  +W  E+R H   N  I+LVG K DLR           
Sbjct: 122 ----------------------AKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKE 158

Query: 182 --LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
             L  +   +    A+    + ++E SAL    ++T F   + A
Sbjct: 159 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  121 bits (305), Expect = 4e-34
 Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 45/232 (19%)

Query: 18  GDSGVGKSNLLSRFTR---NEFNLESKSTIG-VEFATRSIQVDQ--------------KT 59
           G  G+GKS L +RF R   +EF+L+  S +   +F  R +  D                 
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 60  IKAQIW-------DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 112
            K  I        D   Q         Y + A    L                  E   +
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASA---------------EKLMY 139

Query: 113 ADQNIVIMLVGPPSLLRRYYRGAV-GALLVYDIAKH--LTYENVERWLRELRDHADQ-NI 168
              + + +            +  V G LL  D+++     +++  +++  L +   +   
Sbjct: 140 FCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKK 199

Query: 169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            I++V  K D    R +        + + NL  +ETSA  + NV+ AF  ++
Sbjct: 200 PIVVVLTKCDEGVERYIRDAHTFALS-KKNLQVVETSARSNVNVDLAFSTLV 250

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  119 bits (301), Expect = 6e-34
 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 66/229 (28%)

Query: 3   TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKA 62
             +   +   K+V++GDS  GK+ LL  F ++ F      T+   +   S ++D + I+ 
Sbjct: 20  HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIEL 78

Query: 63  QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLV 122
            +WDT+G   Y  +    Y  +   L+ +DI++  T ++V                    
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL------------------- 119

Query: 123 GPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH- 181
                                          ++W  E+++    N  ++LVG KSDLR  
Sbjct: 120 -------------------------------KKWKGEIQEFC-PNTKMLLVGCKSDLRTD 147

Query: 182 -----------LRAVPADEAKTFAER-NNLSFIETSALDSTN-VETAFQ 217
                         V  D+    A++    ++IE SAL S N V   F 
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  117 bits (295), Expect = 2e-33
 Identities = 52/223 (23%), Positives = 82/223 (36%), Gaps = 65/223 (29%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ VD K +   +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           Y  +    Y     +L+ + +    ++ENV                              
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVR----------------------------- 96

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH----------- 181
                                 +W  E+R H   N  I+LVG K DLR            
Sbjct: 97  ---------------------AKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEK 134

Query: 182 -LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
            L  +   +    A+    + ++E SAL    ++T F   + A
Sbjct: 135 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  117 bits (296), Expect = 3e-33
 Identities = 54/223 (24%), Positives = 86/223 (38%), Gaps = 65/223 (29%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K VL+GD  VGK++L+  +T N +  E   T   +  +  + VD + ++ Q+ DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           +  +    Y      LL + +    +++NV                              
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVS----------------------------- 111

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH----------- 181
                                E+W+ E+R H      I+LVG +SDLR            
Sbjct: 112 ---------------------EKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKC 149

Query: 182 -LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
             + VP + AK  AE     S+IE SAL   N++  F   + A
Sbjct: 150 KEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  116 bits (292), Expect = 7e-33
 Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 66/224 (29%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GDS  GK+ LL  F ++ F      T+   +   S ++D + I+  +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           Y  +    Y  +   L+ +DI++  T ++V                              
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVL----------------------------- 98

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH----------- 181
                                ++W  E+++    N  ++LVG KSDLR            
Sbjct: 99  ---------------------KKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNH 136

Query: 182 -LRAVPADEAKTFAER-NNLSFIETSALDSTN-VETAFQNILTA 222
               V  D+    A++    ++IE SAL S N V   F     A
Sbjct: 137 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 180

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  114 bits (287), Expect = 4e-32
 Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 65/235 (27%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTI 60
                     + K V++GD  VGK+ LL  +  + F  E   T+  +    S+ V  K  
Sbjct: 8   SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQY 66

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
              ++DTAGQE Y  +    Y      L+ + +    +++NV+                 
Sbjct: 67  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEE--------------- 111

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                              W+ EL+++A  N+  +L+G + DLR
Sbjct: 112 -----------------------------------WVPELKEYAP-NVPFLLIGTQIDLR 135

Query: 181 H------------LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA 222
                         + +  ++ +  A+      ++E SAL    ++T F   + A
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 190

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  114 bits (287), Expect = 7e-32
 Identities = 35/225 (15%), Positives = 79/225 (35%), Gaps = 66/225 (29%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K+VL+GD   GK+ +L    ++ +      T+   +    ++ +++ ++  +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSP 86

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y  +    Y  +   LL +DI++  T ++  +                           
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKK-------------------------- 120

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH---------- 181
                                   W  E+ D+   +  ++L+G K+DLR           
Sbjct: 121 ------------------------WRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSH 155

Query: 182 --LRAVPADEAKTFAER-NNLSFIETSALDS-TNVETAFQNILTA 222
                +  ++    A++     ++E SA  S  ++ + F+     
Sbjct: 156 QKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 78.9 bits (194), Expect = 1e-17
 Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 65/222 (29%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
             L K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ VD K +   +WDTA
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 211

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           G E Y  +    Y      L+ + +    ++ +V                          
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVR------------------------- 246

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH------- 181
                                     +W  E+R H   N  I+LVG K DLR        
Sbjct: 247 -------------------------AKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEK 280

Query: 182 -----LRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQ 217
                L  +   +    A+    + ++E SAL    ++T F 
Sbjct: 281 LKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 40/218 (18%), Positives = 63/218 (28%), Gaps = 60/218 (27%)

Query: 12  FKVVLIGDSGVGKSNLL----------SRFTRNEFNLESKSTIGVEFATRSI-QVDQKTI 60
           FK+V  G    GK+  L           +        E + T+  +F    I +V     
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           +  ++   GQ  Y A      RG  G + V D A +    N E   R +R          
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM-RNMR---------- 123

Query: 121 LVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR 180
                                         EN+  +   L D     + I++  NK DL 
Sbjct: 124 ------------------------------ENLAEYGLTLDD-----VPIVIQVNKRDLP 148

Query: 181 HLRAVPADE-AKTFAERNNLSFIETSALDSTNVETAFQ 217
              A+P +              +E  A +   V    +
Sbjct: 149 D--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLK 184

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLES---KSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           +++L+G    GKS++           E+   +ST  +     S       +  QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISN---SSFVNFQIWDFPG 78

Query: 70  QERYRAITS---AYYRGAVGALLVYDIAKHLT--YENVERWLRELRDHADQNIVIMLV 122
           Q  +   T      +RG    + V D           +   + +           + +
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 14/122 (11%)

Query: 8   YDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTI 60
           +  +F     +++++G    GK+ +L +    E    +  TIG  VE       V+ K I
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNI 73

Query: 61  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
              +WD  GQ++ R +   Y++   G + V D       +     L+++    +    ++
Sbjct: 74  CFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL 133

Query: 121 LV 122
           LV
Sbjct: 134 LV 135

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 8/83 (9%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
           ++ L+G    GK+  ++     +FN +   T+G  +       ++ +  +  ++WD  G
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR------KITKGNVTIKLWDIGG 76

Query: 70 QERYRAITSAYYRGAVGALLVYD 92
          Q R+R++   Y RG    + + D
Sbjct: 77 QPRFRSMWERYCRGVSAIVYMVD 99

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
           +++++G  G GK+ +L R    E    +K TIG  VE       +  K +K  +WD  G
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE------TLSYKNLKLNVWDLGG 71

Query: 70 QERYRAITSAYYRGAVGALLVYD 92
          Q   R     YY      + V D
Sbjct: 72 QTSIRPYWRCYYADTAAVIFVVD 94

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
           +++++G  G GK+ +L R    E    +  TIG  VE       V  K +K Q+WD  G
Sbjct: 8  MRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVE------TVTYKNLKFQVWDLGG 60

Query: 70 QERYRAITSAYYRGAVGALLVYD 92
              R     YY      + V D
Sbjct: 61 LTSIRPYWRCYYSNTDAVIYVVD 83

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAGQ 70
          +++++G    GK+ +L +    E    +  TIG  VE       V+ K I   +WD  GQ
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYKNISFTVWDVGGQ 54

Query: 71 ERYRAITSAYYRGAVGALLVYD 92
          ++ R +   Y++   G + V D
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVD 76

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESK---STIGVEFATRSIQVDQKTIKAQIWDTAG 69
           K++L+G SG GKS++ S    N    +++   +TI VE +          +   +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDCGG 61

Query: 70  QERYRAIT-----SAYYRGAVGALLVYDIAKHLTYENVERWLREL 109
           Q+ +            ++     + V+D+      +++E + + L
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKAL 106

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
           KV+++G    GK+ +L +F+ NE    +  TIG  VE      ++     +  +WD  G
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE------EIVINNTRFLMWDIGG 69

Query: 70 QERYRAITSAYYRGAVGALLVYD 92
          QE  R+  + YY      ++V D
Sbjct: 70 QESLRSSWNTYYTNTEFVIVVVD 92

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
           KV+++G    GK+ +L +F+ NE    +  TIG  VE      ++     +  +WD  G
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE------EIVINNTRFLMWDIGG 74

Query: 70 QERYRAITSAYYRGAVGALLVYD 92
          QE  R+  + YY      ++V D
Sbjct: 75 QESLRSSWNTYYTNTEFVIVVVD 97

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
           +V+++G    GK+++L R    +    +  T+G  +E       +  K I  ++WD  G
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLE------TLQYKNISFEVWDLGG 75

Query: 70 QERYRAITSAYYRGAVGALLVYD 92
          Q   R     Y+      + V D
Sbjct: 76 QTGVRPYWRCYFSDTDAVIYVVD 98

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
           +++++G    GK+ +L +F   + +     T+G  ++       ++ +  K  IWD  G
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIK------TLEHRGFKLNIWDVGG 71

Query: 70 QERYRAITSAYYRGAVGALLVYD 92
          Q+  R+    Y+    G + V D
Sbjct: 72 QKSLRSYWRNYFESTDGLIWVVD 94

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIG--VEFATRSIQVDQKTIKAQIWDTA 68
            V+ +G    GK+ ++++   +    ++   TIG  +E      +    ++   ++D +
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE------KFKSSSLSFTVFDMS 75

Query: 69 GQERYRAITSAYYRGAVGALLVYD 92
          GQ RYR +   YY+     + V D
Sbjct: 76 GQGRYRNLWEHYYKEGQAIIFVID 99

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
            V+ +G    GK+ L  R    ++  +++++I    A   +  + +     + D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHES 66

Query: 73  YRA-ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDH 112
            R  +   +   A   + V D A        +R ++++ + 
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSA------AFQREVKDVAEF 101

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAG 69
           +++L+G    GK+ LL +    + +     T G  ++       V  +  K  +WD  G
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIK------SVQSQGFKLNVWDIGG 69

Query: 70 QERYRAITSAYYRGAVGALLVYD 92
          Q + R    +Y+      + V D
Sbjct: 70 QRKIRPYWRSYFENTDILIYVID 92

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 14  VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT--IKAQIWDTAGQE 71
           V+L+G    GKS++         N++   T+ +E +T +  ++  +  I   + +  GQ 
Sbjct: 2   VLLMGVRRCGKSSICKVVFH---NMQPLDTLYLE-STSNPSLEHFSTLIDLAVMELPGQL 57

Query: 72  RYRA---ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
            Y      +   ++     + V D      Y N    L  + ++A + 
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKV 103

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 1   MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQK 58
              R        +++++G    GK+ +L +    E    +  TIG  VE       V+ K
Sbjct: 155 PQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE------TVEYK 207

Query: 59  TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 92
            I   +WD  GQ++ R +   Y++   G + V D
Sbjct: 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY 73
          +++ G    GK++LL+  T +     +  +            D       + D  G  + 
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68

Query: 74 RAITSAYYRGAVGAL--LVYDI 93
          R   S Y +     +  L++ +
Sbjct: 69 RYKLSDYLKTRAKFVKGLIFMV 90

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
            +++ G    GK++LL+  T +     +  +     +      D       + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSV-RPTVVSQE-PLSA----ADYDGSGVTLVDFPGHVK 103

Query: 73  YRAITSAYYRGAVGAL--LVYDI 93
            R   S Y +     +  L++ +
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMV 126

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
          K++ +G    GK+ LL     +      + T      +  + +    IK   +D  G  +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAI--GNIKFTTFDLGGHIQ 79

Query: 73 YRAITSAYYRGAVGALLVYD 92
           R +   Y+    G + + D
Sbjct: 80 ARRLWKDYFPEVNGIVFLVD 99

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQVDQKTIKAQIWDTAGQ 70
           K+V +G    GK+ LL     +    +   T+    E      ++    +    +D  G 
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE------ELTIAGMTFTTFDLGGH 79

Query: 71  ERYRAITSAYYRGAVGALLVYD 92
            + R +   Y     G + + D
Sbjct: 80  IQARRVWKNYLPAINGIVFLVD 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 39/179 (21%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE-FATRSIQVDQKTIKAQIW 65
           E D++              + +S   R  + L SK    V+ F    ++++ K + + I 
Sbjct: 50  EIDHIIMS----------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI- 98

Query: 66  DTAGQERYRA---ITSAY--YR----GAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
               +   R    +T  Y   R            Y++++   Y  + + L ELR    +N
Sbjct: 99  ----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KN 152

Query: 117 IVI--ML-VGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML 172
           ++I  +L  G   +       A+   L Y +   + +  +  WL     ++ + ++ ML
Sbjct: 153 VLIDGVLGSGKTWV-------ALDVCLSYKVQCKMDF-KI-FWLNLKNCNSPETVLEML 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.98
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.98
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.98
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.98
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.98
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.98
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.98
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.98
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.98
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.98
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.98
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.95
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.91
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.94
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.86
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.86
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.85
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.85
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.85
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.85
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.84
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.84
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.84
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.84
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.84
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.83
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.82
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.81
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.81
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.81
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.81
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.81
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.81
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.8
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.79
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.78
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.78
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.77
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.77
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.77
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.77
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.76
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.75
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.74
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.74
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.73
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.73
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.72
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.71
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.71
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.69
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.69
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.67
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.67
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.67
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.65
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.65
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.63
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.61
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.6
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.59
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.57
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.56
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.54
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.54
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.49
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.46
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.44
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.44
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.42
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.35
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.12
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.1
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.06
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.93
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.93
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.92
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.86
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.85
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.77
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.72
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.63
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.63
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.46
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.4
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.38
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.17
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.15
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.15
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.13
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.93
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.93
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.89
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.81
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.66
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.65
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.62
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.56
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.53
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.53
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.5
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.49
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.43
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.43
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.41
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.38
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.38
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.37
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.37
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.33
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.33
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.32
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.31
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.29
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.27
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.25
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.23
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.22
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.22
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.2
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.2
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.19
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.19
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.19
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.19
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.18
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.18
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.16
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.15
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.15
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.14
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.13
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.13
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.13
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.12
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.12
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.12
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.11
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.11
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.11
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.1
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.1
1g6h_A	257	High-affinity branched-chain amino acid transport	97.09
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.09
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.09
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.09
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.08
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.07
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.07
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.06
2xxa_A	433	Signal recognition particle protein; protein trans	97.06
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.05
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.05
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.05
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.05
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.05
1via_A	175	Shikimate kinase; structural genomics, transferase	97.05
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.04
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.04
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.03
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.03
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.03
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.03
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.03
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.03
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.03
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.03
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.02
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.02
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.01
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.01
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.01
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.0
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.99
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.99
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.99
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.99
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.98
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.98
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.97
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.97
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.97
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.96
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.96
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.94
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.93
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.93
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.92
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.92
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.91
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.9
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.9
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.87
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.86
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.86
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.86
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.86
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.85
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.85
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.85
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.84
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.84
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.84
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.83
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.82
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.82
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.82
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.81
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.81
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.81
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.8
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.79
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.79
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.78
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.78
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.77
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.77
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.77
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.77
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.76
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.76
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.76
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.75
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.75
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.75
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.74
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.74
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.74
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.74
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.73
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.73
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.72
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.72
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.71
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.7
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.69
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.68
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.67
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.67
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.67
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.66
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.66
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.66
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.64
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.64
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.63
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.63
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.6
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.6
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.6
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.59
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.59
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.58
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.58
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.58
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.58
3end_A	307	Light-independent protochlorophyllide reductase ir	96.57
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.57
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.55
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.55
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.54
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.54
2og2_A	359	Putative signal recognition particle receptor; nuc	96.52
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.51
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.5
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.49
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.48
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.47
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.47
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.46
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.43
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.42
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.41
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.4
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.39
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.36
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.35
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.34
3bos_A	242	Putative DNA replication factor; P-loop containing	96.34
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.33
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.32
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.28
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.27
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.26
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.26
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.25
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.23
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.19
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.16
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.11
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.11
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.11
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.1
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.07
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.06
3uc9_A	233	Increased recombination centers protein 6; rossman	96.06
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.05
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.04
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.04
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.03
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.03
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.0
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.98
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.98
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.96
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.96
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.96
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.94
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.92
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.91
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.89
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.89
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.88
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.85
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.83
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.8
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.79
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.78
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.77
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.76
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.73
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.73
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.73
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.72
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.7
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.69
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.68
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.66
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.63
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.62
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.62
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.61
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.59
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.58
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.57
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.56
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.56
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.56
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.54
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.54
3co5_A	143	Putative two-component system transcriptional RES	95.5
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.5
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.47
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.46
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.45
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.43
2qgz_A	308	Helicase loader, putative primosome component; str	95.43
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.42
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.41
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.39
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.39
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.39
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.36
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.35
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.34
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.33

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.7e-38  Score=232.63  Aligned_cols=161  Identities=37%  Similarity=0.725  Sum_probs=139.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+|+|.+|||||||++++..+.+...+.++++.++.......++..+.+.+|||+|++++..++..++++++++++|
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv   92 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVV   92 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEE
T ss_pred             cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEE
Confidence            58999999999999999999999999999999999999898998999999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||+++.++++.+..|++.+.                                                   .....++|+
T Consensus        93 ~di~~~~Sf~~i~~~~~~i~---------------------------------------------------~~~~~~~pi  121 (216)
T 4dkx_A           93 YDITNVNSFQQTTKWIDDVR---------------------------------------------------TERGSDVII  121 (216)
T ss_dssp             EETTCHHHHHTHHHHHHHHH---------------------------------------------------HHHTTSSEE
T ss_pred             eecchhHHHHHHHHHHHHHH---------------------------------------------------HhcCCCCeE
Confidence            99999999999997666553                                                   333347899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.+.++.++.++++.++++++++|||++|.||+++|+.|++.
T Consensus       122 ilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~  173 (216)
T 4dkx_A          122 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  173 (216)
T ss_dssp             EEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             EEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHH
Confidence            9999999999989999999999999999999999999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=4.9e-33  Score=204.38  Aligned_cols=168  Identities=51%  Similarity=0.844  Sum_probs=148.8

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      .+...++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus         9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   88 (196)
T 3tkl_A            9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG   88 (196)
T ss_dssp             --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred             cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence            34455678999999999999999999999999888888888888888888899988999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|+|.++..+++.+..|+..+                                                   ...
T Consensus        89 ~d~~i~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~  117 (196)
T 3tkl_A           89 AHGIIVVYDVTDQESFNNVKQWLQEI---------------------------------------------------DRY  117 (196)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHh
Confidence            99999999999999888888555544                                                   333


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       118 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  176 (196)
T 3tkl_A          118 ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE  176 (196)
T ss_dssp             SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            33478999999999998888888899999999999999999999999999999999864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.5e-33  Score=205.64  Aligned_cols=166  Identities=43%  Similarity=0.789  Sum_probs=146.6

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ...+..+||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..+...+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            34567899999999999999999999999988888888888888888888998899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||.++..+++.+..|+..+                                                   .....
T Consensus       101 ~~i~v~D~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~  129 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPEWLREI---------------------------------------------------EQYAS  129 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcC
Confidence            999999999999988888665544                                                   33333


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus       130 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  186 (201)
T 2ew1_A          130 NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACR  186 (201)
T ss_dssp             TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            478999999999998877888889999999999999999999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=206.57  Aligned_cols=168  Identities=48%  Similarity=0.834  Sum_probs=137.6

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      .+...+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus        22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  101 (201)
T 2hup_A           22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS  101 (201)
T ss_dssp             ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred             cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence            34566778999999999999999999999999877777888778878888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|||++++.+++.+..|++.+.                                                   ..
T Consensus       102 ~d~iilv~D~~~~~s~~~~~~~~~~i~---------------------------------------------------~~  130 (201)
T 2hup_A          102 ANGAILAYDITKRSSFLSVPHWIEDVR---------------------------------------------------KY  130 (201)
T ss_dssp             CSEEEEEEETTBHHHHHTHHHHHHHHH---------------------------------------------------HH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------Hh
Confidence            999999999999998888886655542                                                   22


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...++|+++|+||+|+.+.+.+..++.++++...++ +++++||+++.|++++|++|++.
T Consensus       131 ~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  190 (201)
T 2hup_A          131 AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATE  190 (201)
T ss_dssp             SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            234789999999999988778888999999999999 99999999999999999999764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.3e-32  Score=201.18  Aligned_cols=167  Identities=42%  Similarity=0.770  Sum_probs=147.0

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      +...+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+
T Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   95 (189)
T 2gf9_A           16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA   95 (189)
T ss_dssp             CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred             CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence            44566789999999999999999999999998878778888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      |++++|+|.++..+++.+..|+..+                                                   ....
T Consensus        96 d~ii~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~  124 (189)
T 2gf9_A           96 MGFLLMYDIANQESFAAVQDWATQI---------------------------------------------------KTYS  124 (189)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhc
Confidence            9999999999998888887665544                                                   3333


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..++|+++|+||+|+.+.+.+..++.++++...+++++++||+++.|++++|++|.+.
T Consensus       125 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  182 (189)
T 2gf9_A          125 WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV  182 (189)
T ss_dssp             CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999998877888889999999999999999999999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=8.8e-33  Score=202.46  Aligned_cols=168  Identities=51%  Similarity=0.825  Sum_probs=143.9

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      .+...++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus        14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   93 (191)
T 2a5j_A           14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG   93 (191)
T ss_dssp             CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence            34556678999999999999999999999999888887888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      ++++++|+|.++..+++.+..|+..+                                                   ...
T Consensus        94 ~d~ii~v~d~~~~~s~~~~~~~l~~i---------------------------------------------------~~~  122 (191)
T 2a5j_A           94 AAGALLVYDITRRETFNHLTSWLEDA---------------------------------------------------RQH  122 (191)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHh
Confidence            99999999999998888887655544                                                   333


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...+.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus       123 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  181 (191)
T 2a5j_A          123 SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE  181 (191)
T ss_dssp             SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            33478999999999998877888889999999999999999999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=202.12  Aligned_cols=166  Identities=40%  Similarity=0.726  Sum_probs=145.7

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ...++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++....+.+||+||+..+......+++.++
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            44567899999999999999999999999987778888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|+|++++.++..+..|+..+                                                   .....
T Consensus        98 ~iilV~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~  126 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKKWVKEL---------------------------------------------------KEHGP  126 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHHHHHHH---------------------------------------------------HHHSC
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHH---------------------------------------------------HHhCC
Confidence            999999999999998888665544                                                   33333


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       127 ~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  183 (192)
T 2fg5_A          127 ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQ  183 (192)
T ss_dssp             TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred             CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence            478999999999998777888899999999999999999999999999999999875

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.8e-32  Score=196.64  Aligned_cols=163  Identities=46%  Similarity=0.759  Sum_probs=144.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|.+|||||||+++|++..+...+.++.+.++......+++..+.+.+||+||+..+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999999999888888888888888888888888999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.++..+..|+..+                                                   ......++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~  112 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKEL---------------------------------------------------QRQASPNI  112 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCCC
Confidence            999999999888888665544                                                   32333478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       113 ~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~  166 (170)
T 1r2q_A          113 VIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK  166 (170)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             cEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999998777788889999999999999999999999999999999875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=1.2e-32  Score=200.59  Aligned_cols=165  Identities=53%  Similarity=0.832  Sum_probs=146.3

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..+..+||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            45778999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.+++.++..+..|+..+                                                   ......
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~  114 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDA---------------------------------------------------RMLASQ  114 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence            99999999998888887665544                                                   323334


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++.+.
T Consensus       115 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  170 (186)
T 2bme_A          115 NIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK  170 (186)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            78999999999998777888889999999999999999999999999999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=200.89  Aligned_cols=167  Identities=68%  Similarity=1.091  Sum_probs=146.7

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      ....+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (193)
T 2oil_A           19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA   98 (193)
T ss_dssp             -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            34566789999999999999999999999998888888888888888888888899999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      +++++|+|.+++.++..+..|+..+                                                   ....
T Consensus        99 d~vi~v~D~~~~~s~~~~~~~l~~i---------------------------------------------------~~~~  127 (193)
T 2oil_A           99 VGALLVFDLTKHQTYAVVERWLKEL---------------------------------------------------YDHA  127 (193)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HTTS
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhc
Confidence            9999999999988888887555544                                                   3333


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       128 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  185 (193)
T 2oil_A          128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKE  185 (193)
T ss_dssp             CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            3478999999999998877788889999999999999999999999999999998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=8.6e-33  Score=198.48  Aligned_cols=164  Identities=38%  Similarity=0.689  Sum_probs=138.3

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++.+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            45789999999999999999999999988877888888888778888888889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|+++..++..+..|+..+..                                                   ....+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~---------------------------------------------------~~~~~  111 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRK---------------------------------------------------MLGNE  111 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHH---------------------------------------------------HHGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------hcCCC
Confidence            999999999988888866655422                                                   22236


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  166 (170)
T 1z08_A          112 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR  166 (170)
T ss_dssp             SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            8999999999998877888899999999999999999999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.3e-32  Score=199.10  Aligned_cols=167  Identities=52%  Similarity=0.857  Sum_probs=146.1

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      +...++.+||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (179)
T 1z0f_A            9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   88 (179)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence            34566789999999999999999999999998887888888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      |++++|+|.++..++..+..|+..+                                                   ....
T Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~  117 (179)
T 1z0f_A           89 AGALMVYDITRRSTYNHLSSWLTDA---------------------------------------------------RNLT  117 (179)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHS
T ss_pred             CEEEEEEeCcCHHHHHHHHHHHHHH---------------------------------------------------HHhc
Confidence            9999999999998888887555544                                                   3333


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..++|+++|+||+|+.+.+.+..++.++++...+++++++||+++.|++++|++|++.
T Consensus       118 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  175 (179)
T 1z0f_A          118 NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK  175 (179)
T ss_dssp             CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            3478999999999998877888889999999999999999999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=3.1e-32  Score=195.50  Aligned_cols=164  Identities=41%  Similarity=0.715  Sum_probs=145.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++.+||+++|.+|||||||++++.+..+...+.++.+.++......+.+....+.+||+||+..+......+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.+++.++..+..|++.+                                                   ......+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l---------------------------------------------------~~~~~~~  111 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVREL---------------------------------------------------RQHGPPS  111 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhCCCC
Confidence            9999999999888887555544                                                   3333357


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       112 ~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  166 (170)
T 1z0j_A          112 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR  166 (170)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence            8999999999998877888889999999999999999999999999999999875

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3e-33  Score=203.44  Aligned_cols=164  Identities=48%  Similarity=0.861  Sum_probs=116.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++.+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            56789999999999999999999999888777778888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||++++.++..+..|+..+                                                   ......+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~  113 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNI---------------------------------------------------EEHASAD  113 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCC
Confidence            9999999999888888665544                                                   3333347


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       114 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  168 (183)
T 2fu5_C          114 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD  168 (183)
T ss_dssp             CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHH
T ss_pred             CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999998777788899999999999999999999999999999999764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.9e-32  Score=197.70  Aligned_cols=165  Identities=42%  Similarity=0.749  Sum_probs=145.3

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      .....+||+++|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34567999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.+++.+++.+..|+..+                                                   ......
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~  116 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQEL---------------------------------------------------QAQGNP  116 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence            99999999999888888665544                                                   333334


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       117 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  172 (181)
T 2efe_B          117 NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARR  172 (181)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHT
T ss_pred             CCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999998777788899999999999999999999999999999999875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.6e-32  Score=195.06  Aligned_cols=162  Identities=40%  Similarity=0.706  Sum_probs=143.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999999888788888888888888888889999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.+++.++..+..|+..+.                                                   .....+.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~~~~p  110 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELH---------------------------------------------------EQASKDII  110 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHH---------------------------------------------------HHSCTTCE
T ss_pred             EEecCChHHHHHHHHHHHHHH---------------------------------------------------HhcCCCCc
Confidence            999999999888886655542                                                   22234789


Q ss_pred             EEEeecccchhhc---cCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHL---RAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.   +.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       111 iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  166 (170)
T 1ek0_A          111 IALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred             EEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999765   6677888899999999999999999999999999999864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=197.36  Aligned_cols=164  Identities=45%  Similarity=0.797  Sum_probs=143.9

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..++.+||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            45678999999999999999999999999888888888888888888889988999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.+++.++..+..|+..+..                                                   .. .
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~---------------------------------------------------~~-~  112 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQ---------------------------------------------------NC-D  112 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHH---------------------------------------------------HC-T
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHH---------------------------------------------------hC-C
Confidence            9999999999999888866555422                                                   22 2


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus       113 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  168 (181)
T 3tw8_B          113 DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITEL  168 (181)
T ss_dssp             TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999888888899999999999999999999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=3.1e-32  Score=201.78  Aligned_cols=165  Identities=52%  Similarity=0.890  Sum_probs=146.8

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            35678999999999999999999999999888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.+++.++..+..|+..+                                                   ......
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~  112 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEI---------------------------------------------------DRYATS  112 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence            99999999999998888665544                                                   333334


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  168 (206)
T 2bcg_Y          113 TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ  168 (206)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            78999999999998877788889999999999999999999999999999998764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=201.62  Aligned_cols=168  Identities=39%  Similarity=0.729  Sum_probs=138.3

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      .+.+.+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus        19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   98 (192)
T 2il1_A           19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS   98 (192)
T ss_dssp             ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence            34556778999999999999999999999998887888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|+|.++..+++.+..|++.+                                                   ...
T Consensus        99 ~d~iilV~D~~~~~s~~~~~~~~~~i---------------------------------------------------~~~  127 (192)
T 2il1_A           99 AKGIILVYDITKKETFDDLPKWMKMI---------------------------------------------------DKY  127 (192)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHh
Confidence            99999999999998888887555444                                                   333


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...++|+++|+||+|+.+.+.+..++.+.++... +.+++++||+++.|++++|++|.+.
T Consensus       128 ~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  187 (192)
T 2il1_A          128 ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD  187 (192)
T ss_dssp             SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            3347899999999999887788888888888874 8899999999999999999999764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=3.2e-32  Score=201.25  Aligned_cols=165  Identities=39%  Similarity=0.765  Sum_probs=146.0

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      +.++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            45678999999999999999999999999888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.+++.++..+..|+..+                                                   ......
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~  112 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQI---------------------------------------------------KTYSWD  112 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence            99999999998888888665544                                                   333334


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  168 (203)
T 1zbd_A          113 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV  168 (203)
T ss_dssp             SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999998877788889999999999999999999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=5.3e-32  Score=195.84  Aligned_cols=162  Identities=36%  Similarity=0.720  Sum_probs=144.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+......+++++|++++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45999999999999999999999998888888888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.+++.++..+..|+..+                                                   ......++|
T Consensus        93 v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~p  121 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDV---------------------------------------------------RTERGSDVI  121 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHHTTSSE
T ss_pred             EEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCCCc
Confidence            99999988888887665544                                                   222234789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       122 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  174 (179)
T 2y8e_A          122 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  174 (179)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred             EEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999998877888889999999999999999999999999999999874

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=201.90  Aligned_cols=166  Identities=52%  Similarity=0.815  Sum_probs=135.2

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ...+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            34567899999999999999999999999888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|+|++++.++..+..|+..+                                                   .....
T Consensus       100 ~~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~  128 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAAWLTDA---------------------------------------------------RTLAS  128 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHTC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcC
Confidence            999999999999888888665544                                                   22233


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus       129 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  185 (200)
T 2o52_A          129 PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART  185 (200)
T ss_dssp             TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            478999999999998877888889999999999999999999999999999999764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-33  Score=204.71  Aligned_cols=166  Identities=40%  Similarity=0.779  Sum_probs=147.3

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ...++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|
T Consensus        18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (191)
T 3dz8_A           18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAM   97 (191)
T ss_dssp             TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCC
T ss_pred             cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCC
Confidence            34567799999999999999999999999888888788888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||.+++.+++.+..|++.+                                                   .....
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~  126 (191)
T 3dz8_A           98 GFILMYDITNEESFNAVQDWATQI---------------------------------------------------KTYSW  126 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcC
Confidence            999999999999988888665544                                                   33333


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus       127 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  183 (191)
T 3dz8_A          127 DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA  183 (191)
T ss_dssp             TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999998888889999999999999999999999999999999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=6e-32  Score=196.52  Aligned_cols=166  Identities=33%  Similarity=0.540  Sum_probs=144.7

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ....+.+||+|+|.+|||||||++++.+..+...+.++.+..+ ......++..+.+.+||+||+..+..++..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            4455689999999999999999999999988888878877666 667778888899999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||.+++.+++.+..|+..+...                                                  ...
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~  121 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRV--------------------------------------------------KDR  121 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------HTS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCC
Confidence            999999999999998888766655221                                                  122


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecC-CCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSAL-DSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+ ++.|++++|++|.+.
T Consensus       122 ~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~  179 (183)
T 3kkq_A          122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV  179 (183)
T ss_dssp             SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHH
Confidence            478999999999998878889999999999999999999999 999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-32  Score=195.80  Aligned_cols=167  Identities=43%  Similarity=0.753  Sum_probs=136.4

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      .+..++.+||+++|.+|||||||++++.+..+. ..+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.
T Consensus         4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   83 (180)
T 2g6b_A            4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD   83 (180)
T ss_dssp             -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred             cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence            345677899999999999999999999998875 3556777778777777788888999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|+|.+++.++..+..|+..+                                                   ...
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~  112 (180)
T 2g6b_A           84 AHALLLLYDVTNKASFDNIQAWLTEI---------------------------------------------------HEY  112 (180)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHh
Confidence            99999999999998888887665544                                                   333


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       113 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  171 (180)
T 2g6b_A          113 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE  171 (180)
T ss_dssp             SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            33478999999999998877788889999999999999999999999999999998764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-32  Score=202.69  Aligned_cols=164  Identities=71%  Similarity=1.127  Sum_probs=137.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .+..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.++++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            45679999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||++++.++..+..|+..+.                                                   .....+
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~---------------------------------------------------~~~~~~  118 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELR---------------------------------------------------ENADDN  118 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHH---------------------------------------------------HHCC--
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHH---------------------------------------------------HhCCCC
Confidence            99999999999988886655552                                                   222347


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus       119 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  173 (223)
T 3cpj_B          119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT  173 (223)
T ss_dssp             CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999998877888889999999999999999999999999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=4e-32  Score=197.14  Aligned_cols=164  Identities=32%  Similarity=0.448  Sum_probs=142.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ..+.+||+++|.+|||||||++++.+..+...+.++.+.++ ......++..+.+.+||+||+..+..++..+++.+|++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            34689999999999999999999998888888878877666 66777888889999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||.+++.+++.+..|+..+...                                                  ....+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~  111 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVIKVIHGKLLDM--------------------------------------------------VGKVQ  111 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------C----
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCC
Confidence            9999999999999998776655321                                                  11236


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus       112 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  166 (181)
T 3t5g_A          112 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE  166 (181)
T ss_dssp             CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHH
Confidence            8999999999998888899999999999999999999999999999999999864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=6.3e-32  Score=193.50  Aligned_cols=162  Identities=35%  Similarity=0.627  Sum_probs=143.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      +..+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..+...+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.+++.+..|+..+..                                                   .. .+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~-~~~  110 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVA---------------------------------------------------EV-GDI  110 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHH---------------------------------------------------HH-CSC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH---------------------------------------------------hC-CCC
Confidence            99999999888888766655522                                                   11 368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       111 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  164 (168)
T 1z2a_A          111 PTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  164 (168)
T ss_dssp             CEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             CEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence            999999999998877788889999999999999999999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=6.4e-32  Score=197.91  Aligned_cols=169  Identities=40%  Similarity=0.737  Sum_probs=143.2

Q ss_pred             CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeE-EEEEEEcCe---------EEEEEEEeCCCCcc
Q psy15625          3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA-TRSIQVDQK---------TIKAQIWDTAGQER   72 (223)
Q Consensus         3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~G~~~   72 (223)
                      |+....+..+||+|+|.+|||||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.+||+||+..
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            45556778899999999999999999999999888777788877776 555656655         78999999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                      +......+++.+|++++|+|.+++.++..+..|+..+..                                         
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----------------------------------------  121 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM-----------------------------------------  121 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHH-----------------------------------------
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----------------------------------------
Confidence            999999999999999999999999888888766555432                                         


Q ss_pred             hHHHHHHhhhccC-CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        153 VERWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       153 ~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                                ... .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       122 ----------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  182 (195)
T 3bc1_A          122 ----------HAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL  182 (195)
T ss_dssp             ----------HSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ----------hcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence                      221 478999999999998877888889999999999999999999999999999999764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=4.5e-32  Score=194.63  Aligned_cols=161  Identities=45%  Similarity=0.835  Sum_probs=135.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+......+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            56899999999999999999999999887777888878878888888888899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.+++.++..+..|+..+                                                   ......++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~p  110 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTV---------------------------------------------------NEHANDEAQ  110 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCTTCE
T ss_pred             EEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCCCc
Confidence            99999988888887555544                                                   333334789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+. .+....++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       111 iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  162 (170)
T 1g16_A          111 LLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  162 (170)
T ss_dssp             EEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999994 45677888899999999999999999999999999998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.6e-31  Score=193.62  Aligned_cols=166  Identities=31%  Similarity=0.509  Sum_probs=142.9

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      .+....+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||+..+..++..+++.++
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   82 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   82 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence            34456799999999999999999999999887777777766654 56667888889999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||+++..++..+..|+..+..                                                  ....
T Consensus        83 ~~i~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~  112 (181)
T 2fn4_A           83 GFLLVFAINDRQSFNEVGKLFTQILR--------------------------------------------------VKDR  112 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHH--------------------------------------------------HHTS
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHH--------------------------------------------------hcCC
Confidence            99999999999999888866655422                                                  1223


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       113 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  169 (181)
T 2fn4_A          113 DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA  169 (181)
T ss_dssp             SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            478999999999998878888899999999999999999999999999999999864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=5.5e-32  Score=195.77  Aligned_cols=166  Identities=32%  Similarity=0.547  Sum_probs=141.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC-eEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-KTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .+.+||+++|.+|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||+..+..++..+++++|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4679999999999999999999999988777778887778788887876 678999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.+++.+++.+..|+..+.....                                                .....
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------------------------~~~~~  115 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSE------------------------------------------------ESETQ  115 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHH------------------------------------------------HHTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhc------------------------------------------------ccCCC
Confidence            999999999999888877666533110                                                01123


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       116 ~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  170 (178)
T 2hxs_A          116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAE  170 (178)
T ss_dssp             CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             CeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            4589999999998877788889999999999999999999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=3.3e-32  Score=200.08  Aligned_cols=169  Identities=27%  Similarity=0.372  Sum_probs=136.5

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-cchhhhc
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-ITSAYYR   82 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~   82 (223)
                      .+.+.++.+||+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|+..+.. ++..+++
T Consensus        16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   95 (195)
T 3cbq_A           16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ   95 (195)
T ss_dssp             ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence            344556789999999999999999999986554444445555666677777888899999999999987664 7778899


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .++++++|||++++.++..+..|+..+....                                                 
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-------------------------------------------------  126 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGR-------------------------------------------------  126 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-------------------------------------------------
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-------------------------------------------------
Confidence            9999999999999999998887666553211                                                 


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       ...++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus       127 -~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~  185 (195)
T 3cbq_A          127 -PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ  185 (195)
T ss_dssp             -TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             -CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHH
Confidence             11368999999999998777788889999999999999999999999999999999864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.8e-32  Score=199.39  Aligned_cols=165  Identities=38%  Similarity=0.669  Sum_probs=131.5

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..++.+||+|+|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+......+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            34557999999999999999999999998877777888888888888889988999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||.++..++..+..|++.+                                                   ......
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~  132 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMI---------------------------------------------------EDAAHE  132 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHC--
T ss_pred             EEEEEECCChHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence            99999999998888887665544                                                   333334


Q ss_pred             CceEEEeecccchhh------ccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRH------LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+      .+.+..++.+.++...+++++++||+++.|++++|++|++.
T Consensus       133 ~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~  194 (199)
T 2p5s_A          133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE  194 (199)
T ss_dssp             -CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999963      46677888899999999999999999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1e-31  Score=196.45  Aligned_cols=166  Identities=38%  Similarity=0.706  Sum_probs=142.8

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-ccchhhhcCCc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-AITSAYYRGAV   85 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~   85 (223)
                      +..+.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+. .+...+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            34457999999999999999999999999888888888888888888888888999999999998888 88889999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|+|.++..++..+..|+..+...                                                  ...
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~  125 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQH--------------------------------------------------LLA  125 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------CCC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh--------------------------------------------------cCC
Confidence            999999999999988888666655331                                                  112


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCC---CCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDS---TNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++   .|++++|++|++.
T Consensus       126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~  185 (189)
T 1z06_A          126 NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHK  185 (189)
T ss_dssp             SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC--
T ss_pred             CCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHH
Confidence            46899999999999887788889999999999999999999999   9999999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=196.11  Aligned_cols=165  Identities=26%  Similarity=0.408  Sum_probs=136.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ....+||+++|.+|||||||++++.+..+...+.++.+..+ .....+++..+.+.+||++|+..+..+ ..+++.++++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            34579999999999999999999999998877778877655 455667888899999999999888775 5689999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||+++..++..+..|+..+.....                                                ....+
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~------------------------------------------------~~~~~  127 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAK------------------------------------------------ETQRS  127 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHH------------------------------------------------HHCCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhh------------------------------------------------ccCCC
Confidence            999999999999999877766633110                                                01137


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeec-CCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSA-LDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+.+..++.++++...+++++++|| +++.|++++|+.|++.
T Consensus       128 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~  183 (187)
T 3c5c_A          128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE  183 (187)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHH
Confidence            899999999999887888899999999999999999999 8999999999999864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.1e-31  Score=200.14  Aligned_cols=164  Identities=22%  Similarity=0.435  Sum_probs=137.8

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ......+||+|+|.+|||||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||++|+..+..++..+++++|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3445579999999999999999999999999888888887665 456667788889999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHH-HHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         86 GALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      ++++|||++++.++.. +..|++.+..                                                   ..
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~---------------------------------------------------~~  129 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILD---------------------------------------------------YC  129 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHH---------------------------------------------------HC
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHH---------------------------------------------------hC
Confidence            9999999999999988 5766555522                                                   22


Q ss_pred             CCCceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCC-HHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTN-VETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~  222 (223)
                       .++|+++|+||+|+.+.            +.+..++...++...++ ++++|||+++.| ++++|++|++.
T Consensus       130 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~  200 (214)
T 3q3j_B          130 -PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML  200 (214)
T ss_dssp             -TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             -CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHH
Confidence             37899999999999763            67889999999999999 999999999998 99999999874

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.5e-31  Score=191.84  Aligned_cols=162  Identities=27%  Similarity=0.391  Sum_probs=126.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-cchhhhcCCcEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-ITSAYYRGAVGALL   89 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~   89 (223)
                      .+||+++|.+|||||||++++.+........++.+.+.....+.+++..+.+.+||++|+..+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998777766666667777788888899999999999999988876 77778999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||+++++++..+..|+..+...                                                  ....++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~p  111 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAG--------------------------------------------------RPHHDLP  111 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------STTSCCC
T ss_pred             EEECCChHHHHHHHHHHHHHHhc--------------------------------------------------ccCCCCC
Confidence            99999999999888666655321                                                  1113689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+++++.
T Consensus       112 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  164 (169)
T 3q85_A          112 VILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQ  164 (169)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHH
Confidence            99999999999888899999999999999999999999999999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=2.2e-31  Score=192.39  Aligned_cols=168  Identities=38%  Similarity=0.700  Sum_probs=140.6

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      +.++.+||+++|.+|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            35568999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|+++..++..+..|+..+.....                                               .....
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~  115 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYAD-----------------------------------------------VKEPE  115 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHT-----------------------------------------------CSCTT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHcc-----------------------------------------------ccccC
Confidence            9999999999998888877766633211                                               11124


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+. .+....++.+.++. ..+++++++||+++.|++++|++|++.
T Consensus       116 ~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  171 (177)
T 1wms_A          116 SFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR  171 (177)
T ss_dssp             TSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence            78999999999997 45677888888888 567899999999999999999999864

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=207.54  Aligned_cols=169  Identities=51%  Similarity=0.842  Sum_probs=138.4

Q ss_pred             CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625          3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR   82 (223)
Q Consensus         3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   82 (223)
                      ..+...++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++
T Consensus        25 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~  104 (199)
T 3l0i_B           25 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR  104 (199)
T ss_dssp             CC-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--C
T ss_pred             ccCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhh
Confidence            34455677899999999999999999999999888887888888888888888998899999999999999999999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++|||.++..+++.+..|+..+                                                   ..
T Consensus       105 ~~d~~i~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~  133 (199)
T 3l0i_B          105 GAHGIIVVYDVTDQESFNNVKQWLQEI---------------------------------------------------DR  133 (199)
T ss_dssp             CCSEEEECC-CCCSHHHHHHHHHHHHH---------------------------------------------------HS
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HH
Confidence            999999999999999998888555444                                                   44


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ....++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       134 ~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~  193 (199)
T 3l0i_B          134 YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAE  193 (199)
T ss_dssp             CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTT
T ss_pred             hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            444578999999999998877777788889999999999999999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.5e-31  Score=199.64  Aligned_cols=167  Identities=39%  Similarity=0.756  Sum_probs=141.4

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe----------EEEEEEEeCCCCcccc
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK----------TIKAQIWDTAGQERYR   74 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~G~~~~~   74 (223)
                      ....+..+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++.          .+.+.+||+||+..+.
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~   98 (217)
T 2f7s_A           19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   98 (217)
T ss_dssp             --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence            345567899999999999999999999999887777777777777777777665          7889999999999999


Q ss_pred             ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625         75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE  154 (223)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  154 (223)
                      ..+..+++.+|++++|||.++..++..+..|+.                                               
T Consensus        99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~-----------------------------------------------  131 (217)
T 2f7s_A           99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS-----------------------------------------------  131 (217)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHH-----------------------------------------------
T ss_pred             hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH-----------------------------------------------
Confidence            999999999999999999999888888875444                                               


Q ss_pred             HHHHHhhhccC-CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        155 RWLRELRDHAD-QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       155 ~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                          .+..... .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       132 ----~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  196 (217)
T 2f7s_A          132 ----QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL  196 (217)
T ss_dssp             ----TCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             ----HHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence                3333222 478999999999998877888899999999999999999999999999999999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.4e-31  Score=191.80  Aligned_cols=163  Identities=31%  Similarity=0.444  Sum_probs=128.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc--ccccchhhhcCCcE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER--YRAITSAYYRGAVG   86 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~~~~~~~~~~   86 (223)
                      ++.+||+++|.+|||||||+++|.+..+...+ ++.+.++....+.+++..+.+.+||+||+..  +..+...+++.+++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            45799999999999999999999998876554 4566677777788888889999999999877  56667788999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||++++.+++.+..|+..+...                                                  ....
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~--------------------------------------------------~~~~  110 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRT--------------------------------------------------HQAD  110 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHC--------------------------------------------------C---
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------hccC
Confidence            99999999999998888666555321                                                  0123


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+.+.+..++.+.++...+++++++||++|.|++++|++|.+.
T Consensus       111 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  166 (175)
T 2nzj_A          111 HVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQ  166 (175)
T ss_dssp             -CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence            68999999999998877788888889999999999999999999999999999763

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=197.49  Aligned_cols=165  Identities=27%  Similarity=0.471  Sum_probs=138.1

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      +....+||+|+|.+|||||||+++|.+..+...+.++.+..+ .....+++..+.+.+||+||+..+..++..+++.+|+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            345679999999999999999999999998888878777665 5566667778899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||.++..++..+..|+..+...                                                  ....
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~  128 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEG--------------------------------------------------HGKT  128 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCC
Confidence            99999999999999988666655321                                                  1123


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       129 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  184 (201)
T 3oes_A          129 RVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQE  184 (201)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            68999999999999888889999999999999999999999999999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.8e-31  Score=194.14  Aligned_cols=167  Identities=26%  Similarity=0.472  Sum_probs=140.0

Q ss_pred             CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625          3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR   82 (223)
Q Consensus         3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   82 (223)
                      |...+..+.+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++
T Consensus        10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   88 (194)
T 2atx_A           10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   88 (194)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence            3444556789999999999999999999999988777777765554 455667778889999999999999999999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      ++|++++|||++++.++..+. .|+..+                                                   .
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~  117 (194)
T 2atx_A           89 MTDVFLICFSVVNPASFQNVKEEWVPEL---------------------------------------------------K  117 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------H
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------H
Confidence            999999999999999988886 455544                                                   2


Q ss_pred             hccCCCceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ... .++|+++|+||+|+.+.            +.+..++...++...++ +++++||+++.|++++|++|++.
T Consensus       118 ~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  190 (194)
T 2atx_A          118 EYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA  190 (194)
T ss_dssp             HHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            222 26899999999999753            46778899999999887 89999999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.98  E-value=6.4e-31  Score=192.94  Aligned_cols=163  Identities=25%  Similarity=0.469  Sum_probs=138.7

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ...+.+||+++|.+|||||||++++.+..+...+.++.+.++. ....+++..+.+.+||+||+..+..++..+++++|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            3456799999999999999999999999988777788776654 456678888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         87 ALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      +++|||.+++.++..+ ..|+..+                                                   .... 
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-  125 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEI---------------------------------------------------KHYI-  125 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-
Confidence            9999999999998887 5444433                                                   3222 


Q ss_pred             CCceEEEeecccchhh--ccCCChHHHHHHHHHcCCe-EEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRH--LRAVPADEAKTFAERNNLS-FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+  .+.+..++.+.++...++. ++++||+++.|++++|++|++.
T Consensus       126 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  185 (194)
T 3reg_A          126 DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC  185 (194)
T ss_dssp             TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHH
Confidence            3689999999999975  3667889999999999998 9999999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.98  E-value=5e-31  Score=188.63  Aligned_cols=162  Identities=29%  Similarity=0.506  Sum_probs=138.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|.+|||||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||+..+..++..+++.++++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            368999999999999999999999988777777776554 4556677788899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||.+++.++..+..|++.+...                                                  ....++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~p  110 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRV--------------------------------------------------KDTEDVP  110 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------HCCSCCC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------hCcCCCc
Confidence            99999999888888666555221                                                  1124789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++.+.++... +.+++++||+++.|++++|++|.+.
T Consensus       111 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (167)
T 1c1y_A          111 MILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ  164 (167)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHH
Confidence            9999999999887788888999999887 7899999999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=1.1e-30  Score=191.57  Aligned_cols=162  Identities=45%  Similarity=0.776  Sum_probs=142.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45799999999999999999999999988888888888888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc-CCC
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA-DQN  167 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~  167 (223)
                      +|+|.+++.++..+..|+..+                                                   .... ..+
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~~~  121 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNEL---------------------------------------------------ETYCTRND  121 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHH---------------------------------------------------TTCCSCSC
T ss_pred             EEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCcCC
Confidence            999999998888887665544                                                   2222 236


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+ +.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus       122 ~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  175 (195)
T 1x3s_A          122 IVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK  175 (195)
T ss_dssp             CEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            89999999999954 5677788999999999999999999999999999999764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.98  E-value=4.8e-31  Score=188.53  Aligned_cols=162  Identities=30%  Similarity=0.485  Sum_probs=139.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|++|||||||++++.+..+...+.++.+.. ....+.+++....+.+||+||+..+..++..+++.++++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            36899999999999999999999998877777776543 36667788888899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|++++.++..+..|+..+...                                                  ....+.|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~p  110 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRV--------------------------------------------------KRYEKVP  110 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------TTTSCCC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCC
Confidence            99999999988888666655221                                                  1123689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       111 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  163 (167)
T 1kao_A          111 VILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ  163 (167)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHH
Confidence            99999999998877888889999999999999999999999999999999764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.98  E-value=5.3e-31  Score=195.99  Aligned_cols=164  Identities=45%  Similarity=0.842  Sum_probs=140.7

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..+..++|+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            34557999999999999999999999998887888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||.+++.++..+..|+..+                                                   ......
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~  124 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTV---------------------------------------------------NEHAND  124 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHH---------------------------------------------------HHhcCC
Confidence            99999999988888887665544                                                   333334


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+ ..+....++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       125 ~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  179 (213)
T 3cph_A          125 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  179 (213)
T ss_dssp             CSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999 445677888889999999999999999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.98  E-value=4.8e-31  Score=192.09  Aligned_cols=162  Identities=30%  Similarity=0.519  Sum_probs=136.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .+..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..++++++++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45689999999999999999999999988877777776555 44566788888999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         88 LLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        88 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      ++|||++++.++..+ ..|+..+                                                   .... .
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i---------------------------------------------------~~~~-~  110 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEI---------------------------------------------------QEFC-P  110 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-T
T ss_pred             EEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHHC-C
Confidence            999999999998888 5454443                                                   2222 3


Q ss_pred             CceEEEeecccchhhc------------cCCChHHHHHHHHHcC-CeEEEeecC-CCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNN-LSFIETSAL-DSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~i~~~  222 (223)
                      +.|+++|+||+|+.+.            +.+..++.+.++.+.+ +++++|||+ ++.|++++|+.+++.
T Consensus       111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~  180 (184)
T 1m7b_A          111 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  180 (184)
T ss_dssp             TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence            6899999999999752            5678888999998887 689999999 689999999999875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.98  E-value=8.3e-31  Score=187.47  Aligned_cols=162  Identities=34%  Similarity=0.567  Sum_probs=136.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+.++..++..+++.++++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999988777767765544 4456678888899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.+++.++..+..|+..+....                                                  ...++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~~~p  111 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVK--------------------------------------------------EDENVP  111 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH--------------------------------------------------CCTTSC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCCCCc
Confidence            999999999888886666553311                                                  123689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       112 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (168)
T 1u8z_A          112 FLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE  164 (168)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence            99999999998877888899999999999999999999999999999999864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.98  E-value=5.2e-31  Score=188.53  Aligned_cols=160  Identities=31%  Similarity=0.432  Sum_probs=116.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||++++.+...... .++.+.++ .....+++..+.+.+||++|+..+..++..+++.++++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997765433 34444444 45566888999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++.+++.+..|+..+...                                                  ....++|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~p~  109 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRA--------------------------------------------------RQTDDVPI  109 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHC--------------------------------------------------C---CCCE
T ss_pred             EECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCCCE
Confidence            9999999999998766655331                                                  11246899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  161 (166)
T 3q72_A          110 ILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ  161 (166)
T ss_dssp             EEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             EEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Confidence            9999999998878889999999999999999999999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.98  E-value=1.2e-30  Score=188.82  Aligned_cols=159  Identities=23%  Similarity=0.374  Sum_probs=131.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|.+|||||||++++.+..+.. +.++.+..+ ...+.+++..+.+.+||++|+..     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            467999999999999999999999998876 567766444 56677888889999999999865     46788999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|||++++.++..+..|++.+..                                                +......++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~------------------------------------------------~~~~~~~~~  109 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSS------------------------------------------------LRGEGRGGL  109 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHH------------------------------------------------HHCSSSCCC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHH------------------------------------------------HHhcCCCCC
Confidence            99999999999999876554422                                                222223478


Q ss_pred             eEEEeecccchh--hccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLR--HLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.  ..+.+..++.+.++... +++++++||+++.|++++|++|++.
T Consensus       110 piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~  166 (178)
T 2iwr_A          110 ALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQK  166 (178)
T ss_dssp             EEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             CEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHH
Confidence            999999999994  45677888899888876 6899999999999999999999764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.98  E-value=1.3e-30  Score=192.54  Aligned_cols=161  Identities=39%  Similarity=0.663  Sum_probs=137.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeE----------------------------
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT----------------------------   59 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------   59 (223)
                      .++.+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            4568999999999999999999999999888888888877777777766654                            


Q ss_pred             ---------EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccc
Q psy15625         60 ---------IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR  130 (223)
Q Consensus        60 ---------~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (223)
                               ..+.+||+||+..+......+++.+|++++|+|.+++.++..+..|+..+                     
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i---------------------  142 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL---------------------  142 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHH---------------------
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHH---------------------
Confidence                     78999999999999999999999999999999999998888887555544                     


Q ss_pred             cccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC
Q psy15625        131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST  210 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  210 (223)
                                                    ....  +.|+++|+||+| ...+....++.+.++...+++++++||+++.
T Consensus       143 ------------------------------~~~~--~~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  189 (208)
T 3clv_A          143 ------------------------------KISS--NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGT  189 (208)
T ss_dssp             ------------------------------HHHS--CCEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             ------------------------------HhhC--CCcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCC
Confidence                                          2222  389999999999 5456778899999999999999999999999


Q ss_pred             CHHHHHHHHHhh
Q psy15625        211 NVETAFQNILTA  222 (223)
Q Consensus       211 ~i~~~~~~i~~~  222 (223)
                      |++++|++|.+.
T Consensus       190 ~i~~l~~~l~~~  201 (208)
T 3clv_A          190 NIKNIFYMLAEE  201 (208)
T ss_dssp             THHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=6.8e-31  Score=194.53  Aligned_cols=163  Identities=30%  Similarity=0.523  Sum_probs=136.1

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..+..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|+..+..++..+++++++
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            345679999999999999999999999998877778776655 4456677888899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         87 ALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      +++|||+++..++..+ ..|+..+                                                   .... 
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i---------------------------------------------------~~~~-  130 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEI---------------------------------------------------QEFC-  130 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHHC-
Confidence            9999999999998888 5554444                                                   2222 


Q ss_pred             CCceEEEeecccchhh------------ccCCChHHHHHHHHHcC-CeEEEeecC-CCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRH------------LRAVPADEAKTFAERNN-LSFIETSAL-DSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~i~~~  222 (223)
                      .+.|+++|+||+|+.+            .+.+..++.+.++...+ +++++|||+ ++.|++++|+.|++.
T Consensus       131 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~  201 (205)
T 1gwn_A          131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  201 (205)
T ss_dssp             TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence            3689999999999974            25677888999998887 689999999 689999999999875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1e-30  Score=192.25  Aligned_cols=165  Identities=30%  Similarity=0.449  Sum_probs=138.4

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ....+.+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+.. ...+..+++.++
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d  100 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE  100 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence            3445679999999999999999999999988877777776554 45566788889999999999887 777788899999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||.+++.+++.+..|++.+...                                                  ...
T Consensus       101 ~iilv~D~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~  130 (196)
T 2atv_A          101 GFVLVYDITDRGSFEEVLPLKNILDEI--------------------------------------------------KKP  130 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------HTT
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHh--------------------------------------------------hCC
Confidence            999999999999988888666655321                                                  112


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC-CHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST-NVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++. |++++|++|++.
T Consensus       131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~  188 (196)
T 2atv_A          131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE  188 (196)
T ss_dssp             SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred             CCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHH
Confidence            378999999999998877888899999999999999999999999 999999999764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.97  E-value=1.9e-30  Score=189.02  Aligned_cols=160  Identities=20%  Similarity=0.339  Sum_probs=133.3

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ....+.+||+|+|.+|||||||++++++..+...+.++. ..+ ...+.+++..+.+.+||++|+..+.     +++.++
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            344557999999999999999999999999887776663 333 4777788999999999999987766     788999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||++++.+++.+..|+..+.....                                                  .
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------------------------------------------------~  117 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRN--------------------------------------------------A  117 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSC--------------------------------------------------G
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcC--------------------------------------------------C
Confidence            99999999999999998866665533211                                                  1


Q ss_pred             CCceEEEeecccchh--hccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLR--HLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.  ..+.+..++.+.++...+ +++++|||+++.|++++|++|++.
T Consensus       118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~  177 (184)
T 3ihw_A          118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQK  177 (184)
T ss_dssp             GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            368999999999994  456788899999999987 899999999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=1.9e-30  Score=188.98  Aligned_cols=165  Identities=34%  Similarity=0.548  Sum_probs=139.5

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ...+.+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            344579999999999999999999999988777767765544 4556678888899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||+++..++..+..|+..+....                                                  ...
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~  122 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVK--------------------------------------------------EDE  122 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHH--------------------------------------------------CCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCC
Confidence            999999999999888886666553211                                                  123


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       123 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  178 (187)
T 2a9k_A          123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE  178 (187)
T ss_dssp             TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence            68999999999998877888899999999999999999999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=8.9e-31  Score=194.29  Aligned_cols=165  Identities=29%  Similarity=0.408  Sum_probs=132.4

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcc--cccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc-ccccchhhhcC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF--NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER-YRAITSAYYRG   83 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~   83 (223)
                      ..++.+||+++|.+|||||||++++.+...  ...+ ++++.++....+.+++..+.+.+|||+|... +..+...+++.
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            445679999999999999999999996443  2222 3455666677777888889999999999776 45566778899


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      ++++++|||+++..+++.+..|+..+...                                                  .
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~--------------------------------------------------~  141 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRA--------------------------------------------------R  141 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTS--------------------------------------------------G
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHH--------------------------------------------------h
Confidence            99999999999999999988665544221                                                  1


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...++|+++|+||+|+.+.+.+..++.+.++...++++++|||++|.|++++|++|++.
T Consensus       142 ~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~  200 (211)
T 2g3y_A          142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQ  200 (211)
T ss_dssp             GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            12368999999999998777888888888888999999999999999999999999763

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=1.2e-30  Score=193.26  Aligned_cols=167  Identities=38%  Similarity=0.700  Sum_probs=141.5

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45789999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.+++.++..+..|+..+.....                                               .....+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~  117 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQAS-----------------------------------------------PRDPEN  117 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHC-----------------------------------------------CSSGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcc-----------------------------------------------cccCCC
Confidence            999999999998888877665533211                                               111136


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+. .+....++...++. ..+++++++||+++.|++++|++|.+.
T Consensus       118 ~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  172 (207)
T 1vg8_A          118 FPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN  172 (207)
T ss_dssp             SCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999997 35667788888887 668899999999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=191.61  Aligned_cols=164  Identities=34%  Similarity=0.550  Sum_probs=140.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ..+.++|+|+|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++.++++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            34569999999999999999999999988777777765544 45666788888999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||+++..++..+..|+..+....                                                  ...+
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~~  119 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVK--------------------------------------------------EDEN  119 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHT--------------------------------------------------TCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCCC
Confidence            99999999999988886666553211                                                  1236


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|++.
T Consensus       120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  174 (206)
T 2bov_A          120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE  174 (206)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             CCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999998877888899999999999999999999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=8.2e-31  Score=190.05  Aligned_cols=169  Identities=36%  Similarity=0.674  Sum_probs=128.2

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ..++.++|+++|.+|||||||++++.+..+...+.++.+.++....+.++ +....+.+||+||+..+...+..+++.+|
T Consensus         4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            34568999999999999999999999999888888888888877777776 56789999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|+|.+++.++..+..|+..+....                                               .....
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------------------------------------------~~~~~  116 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHA-----------------------------------------------NVNSP  116 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHH-----------------------------------------------CCSCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHh-----------------------------------------------cccCc
Confidence            9999999999999988887766553321                                               11112


Q ss_pred             CCceEEEeecccchh-hccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLR-HLRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+. ..+.+..++.+.++. ..+.+++++||+++.|++++|++|.+.
T Consensus       117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  175 (182)
T 1ky3_A          117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS  175 (182)
T ss_dssp             TTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence            478999999999995 445567888888887 567889999999999999999999864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.3e-30  Score=185.94  Aligned_cols=163  Identities=30%  Similarity=0.433  Sum_probs=136.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.+|||||||++++.+..+...+.++.+.++ ......++..+.+.+||+||+..+..+...+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999888777767765544 3445567788899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.+++.+++.+..|++.+.+...                                                 ...+.|
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~-------------------------------------------------~~~~~p  111 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKG-------------------------------------------------DVESIP  111 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC----------------------------------------------------CCC
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC-------------------------------------------------CCCCCC
Confidence            9999998888888766655533110                                                 113689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|.+.
T Consensus       112 ii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (172)
T 2erx_A          112 IMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNL  164 (172)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHT
T ss_pred             EEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHH
Confidence            99999999998877888888889999999999999999999999999999875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=190.17  Aligned_cols=163  Identities=33%  Similarity=0.542  Sum_probs=129.0

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      .....+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            455679999999999999999999999887777777765444 5566678888899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         87 ALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      +++|||++++.++..+. .|+..+                                                   .... 
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-  122 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEI---------------------------------------------------RCHC-  122 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-
Confidence            99999999999988885 454444                                                   2222 


Q ss_pred             CCceEEEeecccchhh------------ccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRH------------LRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+            .+.+..++...++...+. ++++|||+++.|++++|++|++.
T Consensus       123 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  192 (201)
T 2q3h_A          123 PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA  192 (201)
T ss_dssp             SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence            2789999999999975            256778889999998887 89999999999999999999764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=4e-30  Score=189.83  Aligned_cols=164  Identities=31%  Similarity=0.510  Sum_probs=137.3

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      .+....+||+++|.+|||||||++++.+..+...+.++.+.++. ..+.+++..+.+.+||+||+..+..++..+++++|
T Consensus        20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   98 (201)
T 2gco_A           20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (201)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence            34456799999999999999999999999988777777766664 34667888889999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         86 GALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      ++++|||++++.++..+ ..|...+                                                   ....
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~  127 (201)
T 2gco_A           99 VILMCFSIDSPDSLENIPEKWTPEV---------------------------------------------------KHFC  127 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC
Confidence            99999999999888888 4444333                                                   3222


Q ss_pred             CCCceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       .+.|+++|+||+|+.+.            +.+..++...++...+. +++++||+++.|++++|++|.+.
T Consensus       128 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~  197 (201)
T 2gco_A          128 -PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA  197 (201)
T ss_dssp             -TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             -CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence             36899999999999753            45777888999999888 89999999999999999999874

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=1.1e-30  Score=194.22  Aligned_cols=162  Identities=32%  Similarity=0.568  Sum_probs=134.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ..+.+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            45689999999999999999999999988777777776544 45566788888999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         88 LLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      ++|||++++.++..+. .|+..+                                                   .... .
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~  112 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPEL---------------------------------------------------RRFA-P  112 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-T
T ss_pred             EEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-C
Confidence            9999999999988885 455544                                                   2222 2


Q ss_pred             CceEEEeecccchhhccC--------CChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRA--------VPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+.+.        +..++...++...+. +++++||+++.|++++|++|++.
T Consensus       113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  177 (212)
T 2j0v_A          113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKV  177 (212)
T ss_dssp             TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHH
Confidence            689999999999976432        467888899998886 89999999999999999999864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.97  E-value=2e-31  Score=197.48  Aligned_cols=163  Identities=30%  Similarity=0.507  Sum_probs=103.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC--cccccccccceeeeEEEEEEEcCe--EEEEEEEeCCCCccccccchhhhcCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFNLESKSTIGVEFATRSIQVDQK--TIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      ...++|+|+|.+|||||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+||+||+..+..++..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999998  776667677776777777777776  88999999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      |++++|||.+++.++..+..|+..+..                                                   ..
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~  126 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKS---------------------------------------------------AR  126 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHH---------------------------------------------------HC
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHH---------------------------------------------------hh
Confidence            999999999999998888866655533                                                   22


Q ss_pred             C---CCceEEEeecccchhh-ccCCChHHHHHHHHHcCCeEEEeecCC-CCCHHHHHHHHHhh
Q psy15625        165 D---QNIVIMLVGNKSDLRH-LRAVPADEAKTFAERNNLSFIETSALD-STNVETAFQNILTA  222 (223)
Q Consensus       165 ~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~i~~~  222 (223)
                      .   .++|+++|+||+|+.+ .+.+..++.+.++...+++++++||++ +.|++++|++|.+.
T Consensus       127 ~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~  189 (208)
T 2yc2_C          127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT  189 (208)
T ss_dssp             SCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHH
T ss_pred             cccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHH
Confidence            2   4789999999999987 678888999999999999999999999 99999999999764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=8e-30  Score=185.54  Aligned_cols=160  Identities=32%  Similarity=0.540  Sum_probs=135.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.+|||||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||+..+..++..+++.+|++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            579999999999999999999999888777767765444 4556678888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         90 VYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        90 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      |||.+++.++..+. .|+..+                                                   ..... +.
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~~-~~  110 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEV---------------------------------------------------RHHCP-NT  110 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHST-TS
T ss_pred             EEECCChhhHHHHHHHHHHHH---------------------------------------------------HHhCC-CC
Confidence            99999998888876 444433                                                   22222 68


Q ss_pred             eEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.            +.+..++...++...+. +++++||+++.|++++|++|.+.
T Consensus       111 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  177 (186)
T 1mh1_A          111 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  177 (186)
T ss_dssp             CEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHH
Confidence            99999999999753            46778888899999987 89999999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=9.6e-30  Score=188.60  Aligned_cols=163  Identities=31%  Similarity=0.510  Sum_probs=131.2

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      +....+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||+..+..++..+++.+|+
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (207)
T 2fv8_A           21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (207)
T ss_dssp             GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred             ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence            3456789999999999999999999999888777777665553 346678888899999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         87 ALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      +++|||++++.++..+ ..|+..+                                                   .... 
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-  127 (207)
T 2fv8_A          100 ILMCFSVDSPDSLENIPEKWVPEV---------------------------------------------------KHFC-  127 (207)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHS-
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-
Confidence            9999999999888888 4444433                                                   2222 


Q ss_pred             CCceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.            +.+..++...++...+. +++++||+++.|++++|++|.+.
T Consensus       128 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~  197 (207)
T 2fv8_A          128 PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA  197 (207)
T ss_dssp             TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence            36899999999999753            45777888889988888 89999999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=1e-29  Score=185.44  Aligned_cols=162  Identities=32%  Similarity=0.533  Sum_probs=135.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...+||+++|.+|||||||+++|.+..+...+.++.+ +.......+++..+.+.+||+||+..+..++..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999999988777766664 444566678888889999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|||+++..++..+..|+..+...                                                  ....+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~  110 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRV--------------------------------------------------KDSEDV  110 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------TTCSCC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------cCCCCC
Confidence            999999999998888666655331                                                  112478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+ +....++...++...+++++++||+++.|++++|++|.+.
T Consensus       111 p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  163 (189)
T 4dsu_A          111 PMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVRE  163 (189)
T ss_dssp             CEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999974 5667888999999999999999999999999999999864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=6.9e-31  Score=196.18  Aligned_cols=165  Identities=28%  Similarity=0.531  Sum_probs=135.9

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      .....+||+|+|.+|||||||+++|++..+...+.++.+.+......... +..+.+.+||+||+..+..++..+++++|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            34567999999999999999999999988877777777766666655444 34488999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|+|+++..++..+..|+..+                                                   .....
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~  115 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEF---------------------------------------------------QAVVG  115 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHHC
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHH---------------------------------------------------HHhcC
Confidence            999999999999988888665555                                                   33333


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus       116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  172 (218)
T 4djt_A          116 NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARI  172 (218)
T ss_dssp             SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence            468999999999998877788888989999999999999999999999999999864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=4e-30  Score=191.62  Aligned_cols=161  Identities=31%  Similarity=0.523  Sum_probs=115.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            3579999999999999999999999888777767665443 556667888889999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      +|||.+++.++..+. .|++.+                                                   .... .+
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~~  138 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEV---------------------------------------------------NHFC-KK  138 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-SS
T ss_pred             EEEECcCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CC
Confidence            999999998888875 454444                                                   2222 36


Q ss_pred             ceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.            +.+..++.+.++...++ +++++||+++.|++++|++|++.
T Consensus       139 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~  206 (214)
T 2j1l_A          139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV  206 (214)
T ss_dssp             CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            899999999999753            36777888999999997 89999999999999999999864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=1.2e-30  Score=195.39  Aligned_cols=166  Identities=33%  Similarity=0.599  Sum_probs=141.4

Q ss_pred             CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625          3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR   82 (223)
Q Consensus         3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   82 (223)
                      +.+......+||+++|.+|||||||+++++.+.+...+.++.+.+.......+++..+.+.+||+||+..+..++..+++
T Consensus         7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   86 (221)
T 3gj0_A            7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI   86 (221)
T ss_dssp             CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred             ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence            44556667899999999999999999998777777777788888888888888999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      +++++++|||.++..++..+..|+..+..                                                   
T Consensus        87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~---------------------------------------------------  115 (221)
T 3gj0_A           87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVR---------------------------------------------------  115 (221)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHH---------------------------------------------------
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence            99999999999999999888866665532                                                   


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .. .++|+++|+||+|+.+.+.  ..+...++...+++++++||+++.|++++|++|.+.
T Consensus       116 ~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  172 (221)
T 3gj0_A          116 VC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  172 (221)
T ss_dssp             HS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHH
T ss_pred             hC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            22 2689999999999976332  235667788889999999999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=1.4e-29  Score=187.40  Aligned_cols=161  Identities=31%  Similarity=0.516  Sum_probs=133.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|.+|||||||+++++++.+...+.++.+ +.....+.+++..+.+.+||+||+..+..+...+++++|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4579999999999999999999999988777767664 444556667888889999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      +|||.++..++..+. .|+..+                                                   .... .+
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~~  134 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEV---------------------------------------------------RHHC-PN  134 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-SS
T ss_pred             EEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CC
Confidence            999999999988886 454444                                                   2222 37


Q ss_pred             ceEEEeecccchhhcc------------CCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLR------------AVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+            .+..++...++...+. +++++||+++.|++++|++|.+.
T Consensus       135 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          135 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             CCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            8999999999997533            3777888899998886 59999999999999999999875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=5.3e-30  Score=188.19  Aligned_cols=170  Identities=21%  Similarity=0.247  Sum_probs=128.8

Q ss_pred             ccccceeEEEEEEcCCCCcHHHHHHHHhhCccccc----------ccccceeeeEEEEE-EEcCeEEEEEEEeCCCCccc
Q psy15625          5 EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------SKSTIGVEFATRSI-QVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~G~~~~   73 (223)
                      ....++.+||+++|.+|||||||++.+.+......          ..++.+.++....+ .+++..+.+.+|||||+..+
T Consensus         8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            34556789999999999999999987776543321          22344444443333 45677889999999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625         74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV  153 (223)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  153 (223)
                      ..++..+++++|++++|||.+++.+......+..                                             +
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~---------------------------------------------l  122 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRN---------------------------------------------M  122 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHH---------------------------------------------H
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHH---------------------------------------------H
Confidence            9999999999999999999995543333322111                                             1


Q ss_pred             HHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        154 ERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       154 ~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..|+..+. ....++|+++|+||+|+.+  ....++.++++...++ +++++||+++.|++++|++|++.
T Consensus       123 ~~~l~~~~-~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  189 (198)
T 3t1o_A          123 RENLAEYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL  189 (198)
T ss_dssp             HHHHHHTT-CCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             HHHHHhhc-cccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHH
Confidence            14444442 2235799999999999976  4788899999999999 99999999999999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=2.6e-29  Score=184.18  Aligned_cols=163  Identities=29%  Similarity=0.430  Sum_probs=129.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCc--ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc-ccccchhhhcCCc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER-YRAITSAYYRGAV   85 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~   85 (223)
                      ++.+||+++|.+|||||||++++.+..  +...+ ++++.++....+.+++..+.+.+||++|... +..+...+++.++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            457999999999999999999999643  22222 3455666667777888888999999999766 5567778899999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||+++..+++.+..|+..+...                                                  ...
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~--------------------------------------------------~~~  112 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRA--------------------------------------------------RQT  112 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------TTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHh--------------------------------------------------hCC
Confidence            999999999999999988665544221                                                  112


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+...+.+..++.+.++...++++++|||++|.|++++|+++++.
T Consensus       113 ~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~  169 (192)
T 2cjw_A          113 EDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQ  169 (192)
T ss_dssp             SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHH
Confidence            368999999999998777788888888888889999999999999999999998763

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=1.2e-30  Score=189.28  Aligned_cols=161  Identities=32%  Similarity=0.551  Sum_probs=119.7

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+..++..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            4579999999999999999999999887766666654333 223345666778899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      +|+|.+++.+++.+. .|+..+                                                   .... .+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~-~~  112 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPEL---------------------------------------------------KHYA-PG  112 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHC-TT
T ss_pred             EEEECCCHHHHHHHHHHHHHHH---------------------------------------------------HHhC-CC
Confidence            999999999888886 454444                                                   2222 26


Q ss_pred             ceEEEeecccchhhccC----------CChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRA----------VPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+.          +..++...++...+. +++++||+++.|++++|++|.+.
T Consensus       113 ~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  178 (182)
T 3bwd_D          113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV  178 (182)
T ss_dssp             CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            89999999999975433          477888899988886 89999999999999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=9.7e-29  Score=180.98  Aligned_cols=170  Identities=92%  Similarity=1.320  Sum_probs=145.2

Q ss_pred             CCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhh
Q psy15625          2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYY   81 (223)
Q Consensus         2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~   81 (223)
                      ++.+.+.+..++|+++|++|||||||++++.+..+...+.++++.++....+.+++..+.+.+||++|...+..+...++
T Consensus        20 ~~~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~   99 (191)
T 1oix_A           20 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY   99 (191)
T ss_dssp             ----CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHH
T ss_pred             CCcccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHh
Confidence            44555667789999999999999999999999998888889998888888888999888999999999999989999999


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      +.++++++|+|.++..+++.+..|+..+                                                   .
T Consensus       100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~  128 (191)
T 1oix_A          100 RGAVGALLVYDIAKHLTYENVERWLKEL---------------------------------------------------R  128 (191)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------H
T ss_pred             hcCCEEEEEEECcCHHHHHHHHHHHHHH---------------------------------------------------H
Confidence            9999999999999988887777554433                                                   2


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .....+.|+++++||+|+.+.+....++.+.++.+.++.++++||+++.+++++|+.|.+.
T Consensus       129 ~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          129 DHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             HHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            2222368999999999998877778888999999999999999999999999999998763

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.5e-29  Score=186.09  Aligned_cols=164  Identities=30%  Similarity=0.425  Sum_probs=136.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ....++|+++|.+|||||||+++|.+..+...+.++.+.++ ......++..+.+.+||+||+..+..++..+++.+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            34579999999999999999999999888777767766444 34556778888999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||.+++.++..+..|++.+.....                                                . ..+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~------------------------------------------------~-~~~  114 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKG------------------------------------------------S-VED  114 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHS------------------------------------------------C-GGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhc------------------------------------------------C-CCC
Confidence            999999998888888766554432111                                                0 126


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++|+||+|+.+ +.+..++...++...+++++++||+++.|++++|++|.+.
T Consensus       115 ~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  168 (199)
T 2gf0_A          115 IPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTL  168 (199)
T ss_dssp             SCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Confidence            89999999999975 5567788888999999999999999999999999999875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=4.6e-29  Score=182.36  Aligned_cols=161  Identities=32%  Similarity=0.530  Sum_probs=126.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||+..+...+..+++.++++++
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   98 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence            468999999999999999999999888776666655443 4566678888899999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|+++..++..+..|+..+....                                                  ...++|
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~~~p  128 (190)
T 3con_A           99 VFAINNSKSFADINLYREQIKRVK--------------------------------------------------DSDDVP  128 (190)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH--------------------------------------------------TCSCCC
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHh--------------------------------------------------CCCCCe
Confidence            999999999888886666552211                                                  113689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+ +....++.++++...+++++++||+++.|++++|++|.+.
T Consensus       129 ~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  180 (190)
T 3con_A          129 MVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE  180 (190)
T ss_dssp             EEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999976 5677889999999999999999999999999999999864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=4.9e-29  Score=177.77  Aligned_cols=160  Identities=33%  Similarity=0.555  Sum_probs=135.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||++++.+..+...+.++.+..+ ......++..+.+.+||+||+..+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            58999999999999999999999888776666665433 55666788888999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      +|.++..++..+..|+..+....                                                  ...++|+
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~--------------------------------------------------~~~~~p~  111 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVK--------------------------------------------------DSDDVPM  111 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHH--------------------------------------------------TCSCCCE
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc--------------------------------------------------CCCCCcE
Confidence            99999988888886666553211                                                  1136899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+ +....++.++++...+++++++||+++.|++++|++|.+.
T Consensus       112 iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  162 (166)
T 2ce2_X          112 VLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE  162 (166)
T ss_dssp             EEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred             EEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            99999999876 5567888999999999999999999999999999999864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1e-28  Score=181.94  Aligned_cols=164  Identities=93%  Similarity=1.330  Sum_probs=140.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .+..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+..+...+++.++++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            46789999999999999999999999988888888888888888888999989999999999999988999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.++..++..+..|+..+                                                   ......+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~  110 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKEL---------------------------------------------------RDHADSN  110 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHH---------------------------------------------------HHhcCCC
Confidence            9999999988887777554433                                                   2222246


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++++||+|+.+.+....++.+.++...++.++++||+++.|++++|++|.+.
T Consensus       111 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~  165 (199)
T 2f9l_A          111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE  165 (199)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999998877778888999999999999999999999999999998763

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=2.7e-29  Score=184.76  Aligned_cols=166  Identities=17%  Similarity=0.336  Sum_probs=123.5

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      .+..+..||+|+|.+|||||||+++|++..+.. .+.++.+....  .  +++..+.+.+||+||+..+..++..+++++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--T--FEKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--E--EEETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--E--EEeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            455567999999999999999999999999887 66677664432  2  345567899999999999999999999999


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      |++++|||.++..++..+..|+..+....                                             .+....
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~---------------------------------------------~~~~~~  122 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHE---------------------------------------------DIRREL  122 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSH---------------------------------------------HHHSBC
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhCh---------------------------------------------hhhhcc
Confidence            99999999999999999987776553310                                             111111


Q ss_pred             --CCCceEEEeecccchhhccCCChHHHHHH------HHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 --DQNIVIMLVGNKSDLRHLRAVPADEAKTF------AERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 --~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        ..++|+++|+||+|+.+..  ..++....      +...++++++|||+++.|++++|++|.+.
T Consensus       123 ~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  186 (199)
T 4bas_A          123 PGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQET  186 (199)
T ss_dssp             TTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             cccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHH
Confidence              1378999999999997632  22222221      13467789999999999999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=1.4e-28  Score=181.17  Aligned_cols=157  Identities=18%  Similarity=0.265  Sum_probs=118.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.++|+++|++|||||||++++.+..+. .+.++.+.+.  ..+.+++  +.+.+|||||+..+..++..+++++|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            45689999999999999999999988764 3445554443  3444554  78999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.++..+..|+..+...                                                  ....++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~  127 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTD--------------------------------------------------ETIANV  127 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC--------------------------------------------------GGGTTS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhC--------------------------------------------------cccCCC
Confidence            999999999999888666544221                                                  112378


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH-----------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER-----------------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+  .+..+++++++..                 .++++++|||++|+|++++|++|.+.
T Consensus       128 piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          128 PILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999975  4567777776542                 34579999999999999999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=4.5e-28  Score=177.28  Aligned_cols=157  Identities=18%  Similarity=0.256  Sum_probs=123.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|++|||||||++++.+..+. .+.++.+.+  ...+.+++  +.+.+||+||+..+..++..+++++|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999998875 344555443  44555555  78999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.++..+..|+..+..                                                  .....++
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~  125 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFN--------------------------------------------------IAELKDV  125 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTTC
T ss_pred             EEEECCChHHHHHHHHHHHHHHc--------------------------------------------------chhhcCC
Confidence            99999999999988866654422                                                  1112468


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER------------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+  ....+++.+....            .++++++|||++++|++++|++|.+.
T Consensus       126 piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          126 PFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            9999999999975  4556666665432            35679999999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=3.9e-28  Score=177.27  Aligned_cols=158  Identities=22%  Similarity=0.383  Sum_probs=123.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...+||+|+|.+|||||||+++|.+..+...+.++.+.++..    +....+.+.+||+||+..+...+..+++++|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE----EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            456999999999999999999999998877777777665533    2334578999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++..++..+..|+..+..                                                  .....++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~  125 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLD--------------------------------------------------KPQLQGI  125 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHh--------------------------------------------------CcccCCC
Confidence            99999999999888766554422                                                  1112478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.  ...++......     ..+++++++||+++.|++++|++|.+.
T Consensus       126 piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  182 (188)
T 1zd9_A          126 PVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH  182 (188)
T ss_dssp             CEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999752  22233222211     234579999999999999999999875

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=5.5e-28  Score=176.69  Aligned_cols=161  Identities=20%  Similarity=0.349  Sum_probs=123.4

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCc-ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE-FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..+.+||+++|.+|||||||+++|.+.. +...+.++.+  +....+.++  ...+.+||+||+..+...+..+++++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3456899999999999999999999887 4455555554  334444444  3689999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.++..++..+..|+..+.....                                                ....
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------------------------~~~~  125 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPD------------------------------------------------IKHR  125 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTT------------------------------------------------TTTS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChh------------------------------------------------hccC
Confidence            9999999999888888766554422110                                                0013


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+  ....++......     ..+++++++||+++.|++++|++|.+.
T Consensus       126 ~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  184 (190)
T 2h57_A          126 RIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ  184 (190)
T ss_dssp             CCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             CCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence            789999999999975  344556665553     236789999999999999999999875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=4.4e-28  Score=175.92  Aligned_cols=159  Identities=19%  Similarity=0.346  Sum_probs=121.1

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ...+.+||+++|.+|||||||+++|.+..+ ..+.++.+...  ..+.++  ...+.+||+||+..+..++..+++++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEET--TEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            344569999999999999999999999887 44446655443  333343  3789999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.++..++..+..|+..+..                                                  .....
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~  121 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLA--------------------------------------------------HEDLR  121 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHT--------------------------------------------------CGGGT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHh--------------------------------------------------ChhhC
Confidence            9999999999999888766554422                                                  11124


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++|+||+|+.+  ....++......     ..+++++++||+++.|++++|++|.+.
T Consensus       122 ~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          122 KAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             CCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            789999999999965  233444444331     235689999999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=2.2e-28  Score=175.58  Aligned_cols=157  Identities=19%  Similarity=0.342  Sum_probs=120.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|.+|||||||++++.+..+.. +.++.+..  ...+.++  ...+.+||+||+..+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            456999999999999999999999888743 44555433  3344444  568999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.++..+..|+..+..                                                  .....++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~  109 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLE--------------------------------------------------EEELRKA  109 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHT--------------------------------------------------CGGGTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHh--------------------------------------------------chhhCCC
Confidence            99999999998888765554422                                                  1112478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+..  ..++.....     ...+++++++||+++.|++++|++|.+.
T Consensus       110 piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  166 (171)
T 1upt_A          110 ILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET  166 (171)
T ss_dssp             EEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHH
Confidence            999999999997632  223332222     2345689999999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=5.3e-29  Score=177.70  Aligned_cols=154  Identities=19%  Similarity=0.363  Sum_probs=117.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.+..+.. +.++.+..  ...+  ......+.+||+||+..+..++..+++++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999887754 44555532  2333  334578999999999999988999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |.+++.++..+..|+..+..                                                  .....+.|++
T Consensus        76 d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~pii  105 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLA--------------------------------------------------EDELRDAVLL  105 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTTCEEE
T ss_pred             ECCCHHHHHHHHHHHHHHHh--------------------------------------------------chhhcCCeEE
Confidence            99999999888866554422                                                  1122468999


Q ss_pred             EeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+.  ...++......     ..+++++++||+++.|++++|++|.+.
T Consensus       106 lv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  159 (164)
T 1r8s_A          106 VFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (164)
T ss_dssp             EEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             EEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence            99999999652  22233222211     134579999999999999999999864

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=1e-27  Score=174.64  Aligned_cols=157  Identities=19%  Similarity=0.360  Sum_probs=121.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|.+|||||||++++.+.. ...+.++.+..  ...+.++  ...+.+||+||+..+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999888 55566666543  3344443  468999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.++..+..|+..+..                                                  .....+.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~  120 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLV--------------------------------------------------EERLAGA  120 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHh--------------------------------------------------ChhcCCC
Confidence            99999999999888866554422                                                  1112468


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.  ...++..+...     ..+++++++||+++.|++++|++|.+.
T Consensus       121 piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  177 (186)
T 1ksh_A          121 TLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD  177 (186)
T ss_dssp             EEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHH
Confidence            99999999999763  23334333322     245689999999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=8.1e-28  Score=175.39  Aligned_cols=157  Identities=20%  Similarity=0.361  Sum_probs=119.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...+||+++|.+|||||||++++.++.+. .+.++.+...  ..+.++  ...+.+||+||+..+..++..+++++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999988776 4455655433  333343  378999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++++++..+..|+..+...                                                  ....+.
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~  118 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAH--------------------------------------------------EDLRKA  118 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTS--------------------------------------------------GGGTTC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhc--------------------------------------------------hhhCCC
Confidence            999999999999888666544221                                                  112368


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+  ....++..+...     ..+++++++||+++.|++++|++|++.
T Consensus       119 piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (187)
T 1zj6_A          119 GLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  175 (187)
T ss_dssp             EEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             eEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHH
Confidence            9999999999975  234445444432     245689999999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=2.1e-28  Score=179.34  Aligned_cols=158  Identities=19%  Similarity=0.357  Sum_probs=114.8

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ..+.+||+++|.+|||||||++++.++.+.. +.++.+  +....+..  ..+.+.+||+||+..+..++..+++++|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3567999999999999999999999887653 344544  33333333  447899999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.+++.++..+..|+..+..                                                  .....+
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~--------------------------------------------------~~~~~~  130 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQ--------------------------------------------------EDELRD  130 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHT--------------------------------------------------CGGGTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhc--------------------------------------------------ccccCC
Confidence            999999999999888866554422                                                  111236


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++|+||+|+.+.  ...++......     ..++++++|||+++.|++++|++|++.
T Consensus       131 ~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  188 (192)
T 2b6h_A          131 AVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHE  188 (192)
T ss_dssp             CEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHH
Confidence            899999999999653  22233222211     234579999999999999999999874

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=8.5e-28  Score=174.48  Aligned_cols=157  Identities=23%  Similarity=0.364  Sum_probs=119.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ++.++|+++|++|||||||++++.+..+. .+.++.+..  ...+.++  .+.+.+||+||+..+...+..+++++|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999988653 334555533  3344444  568999999999999988999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.++..+..|+..+.                                                  ......++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~--------------------------------------------------~~~~~~~~  118 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELL--------------------------------------------------EEEKLSCV  118 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHT--------------------------------------------------TCGGGTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHH--------------------------------------------------hChhhcCC
Confidence            9999999999988876555431                                                  11122468


Q ss_pred             eEEEeecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+..  ..++..+..     ...++++++|||+++.|++++|++|++.
T Consensus       119 piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (181)
T 1fzq_A          119 PVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (181)
T ss_dssp             CEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHH
Confidence            999999999997632  233332221     1235679999999999999999999865

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.95  E-value=2.5e-28  Score=179.46  Aligned_cols=161  Identities=19%  Similarity=0.233  Sum_probs=115.8

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEE--EE-cCeEEEEEEEeCCCCccccccc---hh
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI--QV-DQKTIKAQIWDTAGQERYRAIT---SA   79 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~D~~G~~~~~~~~---~~   79 (223)
                      .+.++.+||+++|.+|||||||++++.+.... .  ++.+.++.....  .+ ++..+.+.+||++|+..+....   ..
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            44556799999999999999999988875432 2  333333333322  23 2566789999999999987776   89


Q ss_pred             hhcCCcEEEEEEeCCCc--ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625         80 YYRGAVGALLVYDIAKH--LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL  157 (223)
Q Consensus        80 ~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (223)
                      ++++++++++|||.++.  +++..+..|+.                                                  
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~--------------------------------------------------  121 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVS--------------------------------------------------  121 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHH--------------------------------------------------
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHH--------------------------------------------------
Confidence            99999999999999987  33444443332                                                  


Q ss_pred             HHhhhccCCCceEEEeecccchhh-------ccCCChHHHHHHHH----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        158 RELRDHADQNIVIMLVGNKSDLRH-------LRAVPADEAKTFAE----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       158 ~~~~~~~~~~~p~ivv~nK~Dl~~-------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       .+.. ...+.|+++|+||+|+.+       .+.+..++.+.++.    ..++++++|||++ .|++++|+.+++.
T Consensus       122 -~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          122 -KAYK-VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             -HHHH-HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred             -HHHh-cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence             2211 123789999999999643       34455566677777    6788999999999 9999999999874

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.95  E-value=1.1e-28  Score=179.64  Aligned_cols=160  Identities=19%  Similarity=0.415  Sum_probs=113.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC--cccccccccceeeeEEEEEEE---cCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN--EFNLESKSTIGVEFATRSIQV---DQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      .+||+++|++|||||||++++.+.  .+...+.++.+.++....+.+   ++..+.+.+||++|+..+..++..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  444455677776665555443   235678999999999999999999999999


Q ss_pred             EEEEEEeCCCc-ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         86 GALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        86 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                      ++++|||++++ .++..+..|+..+                                                   ....
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~  110 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNI---------------------------------------------------KARA  110 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHH---------------------------------------------------HHHC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHH---------------------------------------------------HhhC
Confidence            99999999887 4677777565544                                                   2221


Q ss_pred             CCCceEEEeecccchhhccCCC---hHHHHHHHHHcCCe----EEEeecCCCC-CHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVP---ADEAKTFAERNNLS----FIETSALDST-NVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~~~~~i~~~  222 (223)
                       .+.|+++|+||+|+.+.+...   .+....++...+++    ++++||+++. +++++++.|.+.
T Consensus       111 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~  175 (184)
T 2zej_A          111 -SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE  175 (184)
T ss_dssp             -TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred             -CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHH
Confidence             268999999999986533221   22344555556776    9999999997 999999998753

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=6.9e-27  Score=184.90  Aligned_cols=161  Identities=30%  Similarity=0.518  Sum_probs=135.7

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||+..+......+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3468999999999999999999999988777777765444 556667888899999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      +|||++++.++..+. .|+..+                                                   ..... +
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~---------------------------------------------------~~~~~-~  259 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEV---------------------------------------------------RHHCP-N  259 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHH---------------------------------------------------HHHCT-T
T ss_pred             EEEeCCCHHHHHHHHHHHHHHH---------------------------------------------------HhhCC-C
Confidence            999999999888875 344333                                                   32222 7


Q ss_pred             ceEEEeecccchhhc------------cCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHL------------RAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.            +.+..++...++...++ ++++|||+++.|++++|+.|.+.
T Consensus       260 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  327 (332)
T 2wkq_A          260 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  327 (332)
T ss_dssp             SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence            899999999999653            56788899999999997 89999999999999999999864

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.95  E-value=2.9e-28  Score=177.99  Aligned_cols=157  Identities=18%  Similarity=0.319  Sum_probs=119.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|.+|||||||++++.+..+.. +.++.+..  ...+..+  ...+.+||+||+..+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            568999999999999999999998877653 44555433  3333343  568999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++++++..+..|+..+..                                                  .....+.
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~  124 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLD--------------------------------------------------EDELRKS  124 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHT--------------------------------------------------CSTTTTC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHh--------------------------------------------------hhhcCCC
Confidence            99999999998888755544321                                                  1122478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+..  ..++.....     ...+++++++||+++.|++++|++|.+.
T Consensus       125 piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  181 (189)
T 2x77_A          125 LLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER  181 (189)
T ss_dssp             EEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHH
Confidence            999999999997532  223332221     2235579999999999999999999764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=4.1e-27  Score=168.36  Aligned_cols=152  Identities=18%  Similarity=0.201  Sum_probs=110.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc------cchhhhc--
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA------ITSAYYR--   82 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~--   82 (223)
                      .++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+..      +...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999999999998776555445444444455555544  5789999999877653      2344554  


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      +++++++|+|.++.+   ....|                                                   +..+..
T Consensus        81 ~~~~~i~v~D~~~~~---~~~~~---------------------------------------------------~~~~~~  106 (165)
T 2wji_A           81 KPDLVVNIVDATALE---RNLYL---------------------------------------------------TLQLME  106 (165)
T ss_dssp             CCSEEEEEEETTCHH---HHHHH---------------------------------------------------HHHHHH
T ss_pred             CCCEEEEEecCCchh---HhHHH---------------------------------------------------HHHHHh
Confidence            788999999987633   22222                                                   222222


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         .++|+++|+||+|+...+.+.. +.+.++...+++++++||+++.|++++|++|.+.
T Consensus       107 ---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~  162 (165)
T 2wji_A          107 ---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA  162 (165)
T ss_dssp             ---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred             ---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence               2689999999999976555543 4677888889999999999999999999999864

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=4.8e-30  Score=189.73  Aligned_cols=161  Identities=32%  Similarity=0.536  Sum_probs=130.0

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ...+||+++|.+|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||+..+...+..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4579999999999999999999998888766666654333 445556777788899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHH-HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         89 LVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      +|+|++++.++..+. .|+..+                                                   ..... +
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l---------------------------------------------------~~~~~-~  134 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEV---------------------------------------------------RHHCP-N  134 (204)
Confidence            999999988887775 443333                                                   22222 6


Q ss_pred             ceEEEeecccchhhcc------------CCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLR------------AVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+            .+..++...++...++ +++++||+++.|++++|++|++.
T Consensus       135 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          135 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            8999999999997532            4556677778888887 89999999999999999999875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=3.9e-27  Score=170.98  Aligned_cols=157  Identities=20%  Similarity=0.387  Sum_probs=117.0

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|++|||||||++++.+..+ ..+.++.+...  ..+.++  ...+.+||+||+..+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999998877 44456655433  333343  378999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.+++.++..+..|+..+..                                                  .....+.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~  120 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQ--------------------------------------------------EEELQDA  120 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTT--------------------------------------------------SSTTSSC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHc--------------------------------------------------ChhhCCC
Confidence            99999999998888755554421                                                  1112478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+.+.  ...++.......     .+++++++||+++.|++++|++|.+.
T Consensus       121 piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  177 (183)
T 1moz_A          121 ALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV  177 (183)
T ss_dssp             EEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence            99999999999752  334444433321     24579999999999999999999864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.94  E-value=5.6e-27  Score=174.44  Aligned_cols=162  Identities=19%  Similarity=0.271  Sum_probs=110.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe-EEEEEEEeCCCCccccc-cchhhhcCCcE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK-TIKAQIWDTAGQERYRA-ITSAYYRGAVG   86 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~-~~~~~~~~~~~   86 (223)
                      ...+||+++|.+|||||||+++|++..+...+.+ .+.+..  .+.+++. .+.+.+|||||+..+.. ++..+++++++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            4578999999999999999999999887766643 333333  3555543 67899999999998887 78888999999


Q ss_pred             EEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh--c
Q psy15625         87 ALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD--H  163 (223)
Q Consensus        87 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~  163 (223)
                      +++|+|.++.. ++.....++..+                                                  +..  .
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~  111 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQV--------------------------------------------------LIDSMA  111 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHH--------------------------------------------------HHHHHT
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHH--------------------------------------------------Hhhhhh
Confidence            99999998743 344443322211                                                  111  1


Q ss_pred             cCCCceEEEeecccchhhccCC----------------------------------ChHHHHHHHHHc---CCeEEEeec
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAV----------------------------------PADEAKTFAERN---NLSFIETSA  206 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~----------------------------------~~~~~~~~~~~~---~~~~~~~Sa  206 (223)
                      ...++|+++|+||+|+.+.+..                                  ..++.+.++...   ++++++|||
T Consensus       112 ~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SA  191 (214)
T 2fh5_B          112 LKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSA  191 (214)
T ss_dssp             STTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBC
T ss_pred             cccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeec
Confidence            2346899999999999753321                                  000111111111   667999999


Q ss_pred             CCC------CCHHHHHHHHHhhC
Q psy15625        207 LDS------TNVETAFQNILTAN  223 (223)
Q Consensus       207 ~~~------~~i~~~~~~i~~~~  223 (223)
                      +++      .|++++|++|.+.+
T Consensus       192 k~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          192 KGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             C-------CCBCHHHHHHHHHHC
T ss_pred             cCCCccccccChHHHHHHHHHhC
Confidence            999      99999999998864

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.1e-27  Score=182.93  Aligned_cols=166  Identities=28%  Similarity=0.395  Sum_probs=116.4

Q ss_pred             ccccceeEEEEEEcCC---------CCcHHHHHHHHhh---Ccccccccccc-eeeeEEEE--------------EEEcC
Q psy15625          5 EDEYDYLFKVVLIGDS---------GVGKSNLLSRFTR---NEFNLESKSTI-GVEFATRS--------------IQVDQ   57 (223)
Q Consensus         5 ~~~~~~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~   57 (223)
                      +....+.+||+|+|.+         |||||||+++|++   ..+...+.++. +.++....              ..+++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            4455667999999999         9999999999998   44544444443 22222111              11355


Q ss_pred             eEEEEEEEe-----------------------CCCCccccccchhhhc---------------------CCcEEEEEEeC
Q psy15625         58 KTIKAQIWD-----------------------TAGQERYRAITSAYYR---------------------GAVGALLVYDI   93 (223)
Q Consensus        58 ~~~~~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~   93 (223)
                      ..+.+.+||                       ++|+..+..++..+++                     ++|++++|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            677899999                       5666666667777766                     78999999999


Q ss_pred             CCc--ccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         94 AKH--LTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        94 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      +++  .+++.+..|+..+...                                                  ....++|++
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~--------------------------------------------------~~~~~~pii  202 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQ--------------------------------------------------LAKTKKPIV  202 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHH--------------------------------------------------HHHTTCCEE
T ss_pred             CCCchhhHHHHHHHHHHHHHH--------------------------------------------------hccCCCCEE
Confidence            988  8888888766655321                                                  012368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+.+.+  ++.+.++.. .+++++++||+++.|++++|++|++.
T Consensus       203 lV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~  252 (255)
T 3c5h_A          203 VVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL  252 (255)
T ss_dssp             EEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999654333  567777766 48899999999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.94  E-value=2.1e-26  Score=166.25  Aligned_cols=155  Identities=19%  Similarity=0.215  Sum_probs=116.5

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .+..++|+++|.+|||||||++++.+..+...+.++.+.++....+.+++.  .+.+||+||+..+..++..+++.+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            456789999999999999999999998887766666655555555556554  568999999999999998999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|+|.++.........                                                    +..+   ...+
T Consensus        83 i~v~d~~~~~~~~~~~~----------------------------------------------------l~~~---~~~~  107 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVEA----------------------------------------------------INHA---KAAN  107 (178)
T ss_dssp             EEEEETTCCCCHHHHHH----------------------------------------------------HHHH---GGGS
T ss_pred             EEEEECCCCCcHHHHHH----------------------------------------------------HHHH---HhCC
Confidence            99999887544333221                                                    1111   1136


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHc-------C--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERN-------N--LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.   ..++........       +  ++++++||+++.|++++|++|++.
T Consensus       108 ~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  168 (178)
T 2lkc_A          108 VPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLV  168 (178)
T ss_dssp             CCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHh
Confidence            899999999998652   223333333222       2  579999999999999999999864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=9.8e-26  Score=172.14  Aligned_cols=154  Identities=18%  Similarity=0.159  Sum_probs=115.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc------hhhh-
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT------SAYY-   81 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------~~~~-   81 (223)
                      .+.++|+++|.+|||||||+++|++..+.....+..+.+.....+..  ....+.+||+||+..+....      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY--KGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE--CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            35789999999999999999999998776555555444444444433  34689999999987776532      4444 


Q ss_pred             -cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         82 -RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        82 -~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                       ..+|++++|+|.++.++...   |                                                   ...+
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~~---~---------------------------------------------------~~~l  106 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSLY---L---------------------------------------------------LLEI  106 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHHH---H---------------------------------------------------HHHH
T ss_pred             hcCCCEEEEEeCCCchhhHHH---H---------------------------------------------------HHHH
Confidence             57888888888887543221   2                                                   1222


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..   .++|+++|+||+|+...+.+.. +...++...|++++++||+++.|++++|+++.+.
T Consensus       107 ~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (258)
T 3a1s_A          107 LE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEY  164 (258)
T ss_dssp             HT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             Hh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHH
Confidence            22   2689999999999987655553 5788888999999999999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.94  E-value=1.1e-25  Score=169.05  Aligned_cols=162  Identities=20%  Similarity=0.173  Sum_probs=108.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc---------ccchh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR---------AITSA   79 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~~~   79 (223)
                      ...++|+|+|.+|||||||+++|++..+.....+..+.+.........  ...+.+|||||+....         .....
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            457999999999999999999999987753333332333333333233  3678999999984311         11123


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625         80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE  159 (223)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (223)
                      ++..+|++++|+|.++..++... .+.                                                .|+..
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~-~~~------------------------------------------------~~~~~  135 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIK-EQI------------------------------------------------NLFYS  135 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHH-HHH------------------------------------------------HHHHH
T ss_pred             hhccccEEEEEEecccccCcchH-HHH------------------------------------------------HHHHH
Confidence            46777888888888877665311 111                                                22333


Q ss_pred             hhhccCCCceEEEeecccchhhccCCChH---HHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        160 LRDHADQNIVIMLVGNKSDLRHLRAVPAD---EAKTFAERNN--LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.... .++|+++|+||+|+.+.+.+..+   ....++...+  ++++++||+++.|++++|++|++.
T Consensus       136 l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~  202 (228)
T 2qu8_A          136 IKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL  202 (228)
T ss_dssp             HHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHH
Confidence            33221 26899999999999876666554   4566666777  889999999999999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=8e-26  Score=176.90  Aligned_cols=160  Identities=21%  Similarity=0.303  Sum_probs=123.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccc---cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-----cccchhhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL---ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-----RAITSAYY   81 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~~~~   81 (223)
                      ..+||+++|.+|||||||++++.++....   .+.++.+  .....+.+.+ .+.+.+||+||+..+     ..+...++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            46899999999999999999998873322   2334443  3334444444 678999999999888     77888899


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      +++|++++|||.++..+++.+..|.+.+..                                                +.
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~------------------------------------------------l~  110 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQ------------------------------------------------LR  110 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHH------------------------------------------------HH
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHH------------------------------------------------HH
Confidence            999999999999999999998866554422                                                22


Q ss_pred             hccCCCceEEEeecccchhh--ccC----CChHHHHHHHHHcC---CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRH--LRA----VPADEAKTFAERNN---LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .. ..++|+++|+||+|+.+  .+.    +..++.++++...|   ++++++||++ .++.++|..+++.
T Consensus       111 ~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~  178 (307)
T 3r7w_A          111 KY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCS  178 (307)
T ss_dssp             HH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred             Hh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHH
Confidence            22 23689999999999975  333    55577888888887   7899999999 8999999888763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=1.5e-25  Score=163.36  Aligned_cols=153  Identities=19%  Similarity=0.207  Sum_probs=114.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc------cchhhhc-
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA------ITSAYYR-   82 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~-   82 (223)
                      +.++|+++|++|||||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||+..+..      +...+++ 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            568999999999999999999999776555556655565555555543  6789999999877642      3444443 


Q ss_pred             -CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         83 -GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        83 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                       .++++++++|.++   ++...                                                   .|+..+.
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~---------------------------------------------------~~~~~~~  109 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNL---------------------------------------------------YLTLQLM  109 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHH---------------------------------------------------HHHHHHH
T ss_pred             cCCCEEEEEecchh---HHHHH---------------------------------------------------HHHHHHH
Confidence             4788888888754   33333                                                   2333332


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .   .+.|+++|+||+|+.+.+.+. .+.+.++...+++++++||+++.|++++|+++++.
T Consensus       110 ~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  166 (188)
T 2wjg_A          110 E---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA  166 (188)
T ss_dssp             T---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred             h---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            2   368999999999998755544 46778888889999999999999999999999764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.94  E-value=5.7e-26  Score=173.19  Aligned_cols=151  Identities=17%  Similarity=0.164  Sum_probs=112.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc----------cchhhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA----------ITSAYY   81 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~   81 (223)
                      .+|+++|.+|||||||+|+|++........+..+.+.....+..++.  .+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998876666677666666666666554  789999999876654          333445


Q ss_pred             --cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625         82 --RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE  159 (223)
Q Consensus        82 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (223)
                        +.+|++++|+|.++.+....+.                                                   .   .
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~---------------------------------------------------~---~  105 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLT---------------------------------------------------S---Q  105 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHH---------------------------------------------------H---H
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHH---------------------------------------------------H---H
Confidence              6777777777776643322222                                                   1   1


Q ss_pred             hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.   ..++|+++|+||+|+.+.+... .....+....+++++++||+++.|++++|++|.+.
T Consensus       106 l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          106 LF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             HH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            11   2278999999999998755433 34566778889999999999999999999999763

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=2.5e-26  Score=168.42  Aligned_cols=161  Identities=15%  Similarity=0.188  Sum_probs=101.5

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC----------Cccc
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG----------QERY   73 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~   73 (223)
                      .+.+.+..++|+++|.+|||||||+++|.+..+.....++.+.+........+.   .+.+|||||          +..+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~   92 (195)
T 1svi_A           16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAW   92 (195)
T ss_dssp             GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHH
T ss_pred             hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHH
Confidence            334455679999999999999999999999876555555555554444444443   589999999          4444


Q ss_pred             cccchhhhcCC---cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccch
Q psy15625         74 RAITSAYYRGA---VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTY  150 (223)
Q Consensus        74 ~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  150 (223)
                      ..+...+++.+   +++++|+|.++..+.....-                                              
T Consensus        93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----------------------------------------------  126 (195)
T 1svi_A           93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQM----------------------------------------------  126 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHH----------------------------------------------
T ss_pred             HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHH----------------------------------------------
Confidence            44555555555   67777777766555443320                                              


Q ss_pred             hhhHHHHHHhhhccCCCceEEEeecccchhhccCCCh--HHHHH-HHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        151 ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA--DEAKT-FAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         ..|+.   .   .+.|+++|+||+|+.+.+.+..  +++.+ +....+.+++++||+++.|++++|++|.+.
T Consensus       127 ---~~~~~---~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  192 (195)
T 1svi_A          127 ---YEFLK---Y---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM  192 (195)
T ss_dssp             ---HHHHH---H---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ---HHHHH---H---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence               02221   1   3689999999999976433221  22322 222346789999999999999999999764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=4.2e-26  Score=175.17  Aligned_cols=152  Identities=18%  Similarity=0.190  Sum_probs=111.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc------cchhhhc-
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA------ITSAYYR-   82 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~~-   82 (223)
                      ..++|+++|.+|||||||+|+|++........+..  +.......+.. ...+.+|||||+..+..      +...++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            35799999999999999999999876544444443  33333334454 56789999999877652      3445554 


Q ss_pred             -CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         83 -GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        83 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                       .+|++++|+|.++.+..   .                                                   .|...+.
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~---------------------------------------------------~~~~~l~  104 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---L---------------------------------------------------YLTTQLI  104 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---H---------------------------------------------------HHHHHHH
T ss_pred             CCCCEEEEEecCCchHhH---H---------------------------------------------------HHHHHHH
Confidence             58888888888764322   2                                                   1222222


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .   .++|+++|+||+|+...+.+. .+...++...+++++++||+++.|++++|+++.+.
T Consensus       105 ~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  161 (272)
T 3b1v_A          105 E---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHT  161 (272)
T ss_dssp             H---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred             h---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            2   378999999999998655554 46778888889999999999999999999999874

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=1.5e-25  Score=161.36  Aligned_cols=152  Identities=21%  Similarity=0.205  Sum_probs=104.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--------hhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--------SAY   80 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--------~~~   80 (223)
                      +..+|+++|.+|||||||+++|.+..... ...+..+.++....+.+++.  .+.+|||||+..+....        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            45799999999999999999999876432 22344445555666666653  57999999976532211        124


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      ++.+|++++|+|.++..++.. .                                                   .|+..+
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~---------------------------------------------------~~~~~~  108 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-A---------------------------------------------------EIWPEF  108 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-H---------------------------------------------------HHCHHH
T ss_pred             HHhCCEEEEEEECCCCCCHHH-H---------------------------------------------------HHHHHH
Confidence            677788888888777666442 2                                                   233333


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ......++|+++|+||+|+.+...       .++...+.+++++||+++.|++++|++|.+.
T Consensus       109 ~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  163 (172)
T 2gj8_A          109 IARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQS  163 (172)
T ss_dssp             HHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            333334789999999999964211       1122346789999999999999999999864

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.9e-25  Score=176.33  Aligned_cols=156  Identities=20%  Similarity=0.332  Sum_probs=113.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+|+|.+|||||||+++|.+..+.... ++.+..+  ..  +....+.+.+|||||+..+..++..+++.+|++++
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EE--EEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EE--EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4579999999999999999999988865433 4444333  22  33345789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||.++..++..+..++..+.                                                  ......++|
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~--------------------------------------------------~~~~~~~~p  268 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRML--------------------------------------------------AEDELRDAV  268 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHH--------------------------------------------------TCGGGTTCE
T ss_pred             EEECCchHHHHHHHHHHHHHH--------------------------------------------------hhhccCCCe
Confidence            999999999988876554331                                                  222234789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+..  ..+++......     .+++++++||+++.|++++|++|++.
T Consensus       269 iilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~  324 (329)
T 3o47_A          269 LLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  324 (329)
T ss_dssp             EEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             EEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence            99999999997532  23333322221     24579999999999999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=6.5e-25  Score=155.84  Aligned_cols=149  Identities=20%  Similarity=0.227  Sum_probs=101.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-------cccchhhhcC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-------RAITSAYYRG   83 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~   83 (223)
                      .||+++|.+|+|||||++++.+..+.. ...+..+.+.....+..++.  .+.+||+||+..+       ......+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            589999999999999999999887532 22233334444445555443  7899999998763       3334456788


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|+|.++..+....  ++.                                               .++..    
T Consensus        80 ~~~~i~v~d~~~~~~~~~~--~~~-----------------------------------------------~~~~~----  106 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQADY--EVA-----------------------------------------------EYLRR----  106 (161)
T ss_dssp             CSEEEEEEESSSCCCHHHH--HHH-----------------------------------------------HHHHH----
T ss_pred             CCEEEEEEECCCcccHhHH--HHH-----------------------------------------------HHHHh----
Confidence            9999999998875443221  111                                               11111    


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        .+.|+++|+||+|+.+.+    ++..+++ +.++ +++++||+++.|++++|++|.+.
T Consensus       107 --~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  159 (161)
T 2dyk_A          107 --KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWER  159 (161)
T ss_dssp             --HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred             --cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence              268999999999997642    3344444 5677 79999999999999999999874

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=1.3e-24  Score=170.06  Aligned_cols=162  Identities=17%  Similarity=0.146  Sum_probs=111.5

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----------
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----------   74 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------   74 (223)
                      .+..+.-.|+++|.+|||||||+|+|++..+..... +..+..........+ ....+.+|||||+....          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            455667899999999999999999999988764432 222222222222222 15688999999986544          


Q ss_pred             ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625         75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE  154 (223)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  154 (223)
                      .....+++.+|++++|+|.++..+.....                                                   
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~---------------------------------------------------  112 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEE---------------------------------------------------  112 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHH---------------------------------------------------
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHH---------------------------------------------------
Confidence            23344556666666666666655554444                                                   


Q ss_pred             HHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+..+..   .+.|+++|+||+|+...+....+....+....+  .+++++||+++.|++++|+.|.+.
T Consensus       113 ~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~  179 (308)
T 3iev_A          113 IYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKY  179 (308)
T ss_dssp             HHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHh
Confidence            33444443   268999999999997334445666777777765  789999999999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=2.4e-25  Score=171.50  Aligned_cols=152  Identities=16%  Similarity=0.157  Sum_probs=109.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccccc----------chhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAI----------TSAY   80 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~----------~~~~   80 (223)
                      .++|+++|.+|||||||+|+|++..+.....+..+.+.....+...+  ..+.+|||||+..+...          ...+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999999887666666655555555555443  46789999998776532          1112


Q ss_pred             --hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625         81 --YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR  158 (223)
Q Consensus        81 --~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  158 (223)
                        .+.+|++++|+|.++.+....+.                                                      .
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~------------------------------------------------------~  106 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLT------------------------------------------------------L  106 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHH------------------------------------------------------H
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHH------------------------------------------------------H
Confidence              25677777777766533222221                                                      1


Q ss_pred             HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .+..   .++|+++|+||+|+.+.+.. ......+....+++++++||++|.|++++|++|.+.
T Consensus       107 ~l~~---~~~p~ivv~NK~Dl~~~~~~-~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~  166 (274)
T 3i8s_A          107 QLLE---LGIPCIVALNMLDIAEKQNI-RIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRY  166 (274)
T ss_dssp             HHHH---HTCCEEEEEECHHHHHHTTE-EECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTC
T ss_pred             HHHh---cCCCEEEEEECccchhhhhH-HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            1221   16899999999999764443 234567788889999999999999999999999865

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=7.4e-26  Score=189.61  Aligned_cols=160  Identities=23%  Similarity=0.287  Sum_probs=116.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEE------EE--cCeEEEEEEEeCCCCccccccchh
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI------QV--DQKTIKAQIWDTAGQERYRAITSA   79 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~D~~G~~~~~~~~~~   79 (223)
                      ....+||+++|.+|||||||++++++..+...+.++++.++.....      .+  ++..+.+.+||+||+..+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            4557999999999999999999999998887777887777665421      11  234678999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625         80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE  159 (223)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (223)
                      +++.++++++|+|.++.+   .+..|+                                                   ..
T Consensus       118 ~l~~~d~ii~V~D~s~~~---~~~~~~---------------------------------------------------~~  143 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDS---NKHYWL---------------------------------------------------RH  143 (535)
T ss_dssp             HHHSSEEEEEEECGGGGG---GHHHHH---------------------------------------------------HH
T ss_pred             HccCCcEEEEEEeCCCch---hHHHHH---------------------------------------------------HH
Confidence            999999999999987653   334333                                                   33


Q ss_pred             hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +..... +.|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+.|.+.
T Consensus       144 l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~  205 (535)
T 3dpu_A          144 IEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA  205 (535)
T ss_dssp             HHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHH
T ss_pred             HHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHH
Confidence            333322 68999999999998777788888888888899999999999999999999998764

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.92  E-value=7.9e-26  Score=175.71  Aligned_cols=154  Identities=19%  Similarity=0.204  Sum_probs=112.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccccc---ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc---cchhhhcCCcE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLE---SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA---ITSAYYRGAVG   86 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~   86 (223)
                      ||+++|..|||||||++++.+...+..   ..++++.++..    ++ ..+.+++|||+|++++..   ....+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            689999999999999999886654332   34666655543    22 347899999999999964   35789999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||+++. ..+....|.+                                                |+..+.... +
T Consensus        76 ~IlV~Ditd~-~~~~~~~l~~------------------------------------------------~l~~~~~~~-~  105 (331)
T 3r7w_B           76 LVYVIDSQDE-YINAITNLAM------------------------------------------------IIEYAYKVN-P  105 (331)
T ss_dssp             EEEECCCSSC-TTHHHHHHHH------------------------------------------------HHHHHHHHC-T
T ss_pred             EEEEEECCch-HHHHHHHHHH------------------------------------------------HHHHHhhcC-C
Confidence            9999999987 3333332222                                                222222222 3


Q ss_pred             CceEEEeecccchhhc-------cCCChHHHHHHHHH----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHL-------RAVPADEAKTFAER----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+++++||+|+.+.       +.+..++.++++..    .++.|+++||++ .++.+.|..+++.
T Consensus       106 ~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~  171 (331)
T 3r7w_B          106 SINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQK  171 (331)
T ss_dssp             TCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTT
T ss_pred             CCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHH
Confidence            7899999999999642       34555666677765    578999999997 6999999998864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=1.7e-24  Score=166.76  Aligned_cols=153  Identities=22%  Similarity=0.190  Sum_probs=113.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc------cchhhh--c
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA------ITSAYY--R   82 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~   82 (223)
                      .++|+++|++|||||||+++|++..+.....+..+.+.....+...+.  .+.+||+||+..+..      +...++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            579999999999999999999998876666676666666666555543  589999999877665      344444  5


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++|+|.++.+.   ..                                                   .+...+..
T Consensus        81 ~~d~vi~v~D~~~~~~---~~---------------------------------------------------~~~~~~~~  106 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NL---------------------------------------------------FLTLELFE  106 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HH---------------------------------------------------HHHHHHHH
T ss_pred             CCcEEEEEecCCcchh---hH---------------------------------------------------HHHHHHHh
Confidence            7888888888766421   11                                                   11222222


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .  ..+|+++|+||+|+.+.+.... +...+....+++++++||+++.|++++|+.+.+.
T Consensus       107 ~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~  163 (271)
T 3k53_A          107 M--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALM  163 (271)
T ss_dssp             T--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             c--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            1  1289999999999876544443 3777888889999999999999999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.92  E-value=1.2e-25  Score=163.97  Aligned_cols=160  Identities=20%  Similarity=0.215  Sum_probs=110.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC-----------Cccccccchhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG-----------QERYRAITSAY   80 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~   80 (223)
                      +||+++|.+|||||||++++.+..+...+.++.+...  ..+...    .+.+||+||           +..+......+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999987766666544333  223233    679999999           44455555566


Q ss_pred             hcC-CcEEEEEEeCCCcccHHHH-HHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625         81 YRG-AVGALLVYDIAKHLTYENV-ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR  158 (223)
Q Consensus        81 ~~~-~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  158 (223)
                      ++. ++++++++++.+..++..+ ..|...-..                                      .    ....
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~--------------------------------------~----~~~~  113 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEI--------------------------------------P----IDVE  113 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCC--------------------------------------C----HHHH
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCcc--------------------------------------H----HHHH
Confidence            666 6766666777666666665 434321000                                      0    0000


Q ss_pred             HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe-------EEEeecCCCCCHHHHHHHHHhh
Q psy15625        159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS-------FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ........++|+++|+||+|+...+   .++.+.++.+.+.+       ++++||+++.|++++|++|.+.
T Consensus       114 ~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  181 (190)
T 2cxx_A          114 FYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV  181 (190)
T ss_dssp             HHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHh
Confidence            1111122478999999999997633   56778888888864       6999999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=3.7e-24  Score=156.60  Aligned_cols=160  Identities=20%  Similarity=0.258  Sum_probs=104.3

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCC----------Cccc
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG----------QERY   73 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~   73 (223)
                      ++.+....+||+++|.+|||||||++++++.... ...++.+.+........+.   .+.+||+||          +..+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~   91 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW   91 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence            3444556789999999999999999999998743 3334444444333333332   468999999          3334


Q ss_pred             cccchhhhcCC---cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccch
Q psy15625         74 RAITSAYYRGA---VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTY  150 (223)
Q Consensus        74 ~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  150 (223)
                      ..+...+++.+   +++++|+|.++..+.....                                               
T Consensus        92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-----------------------------------------------  124 (195)
T 3pqc_A           92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM-----------------------------------------------  124 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----------------------------------------------
T ss_pred             HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH-----------------------------------------------
Confidence            44445555544   6666666665543322221                                               


Q ss_pred             hhhHHHHHHhhhccCCCceEEEeecccchhhcc--CCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        151 ENVERWLRELRDHADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        +..|+...      ++|+++|+||+|+.+..  ....++.+.++.. .+++++++||+++.|++++|++|.+.
T Consensus       125 --~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  191 (195)
T 3pqc_A          125 --MVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTL  191 (195)
T ss_dssp             --HHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             --HHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHH
Confidence              01222221      68999999999986422  2233445555555 34789999999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.91  E-value=1.5e-24  Score=162.17  Aligned_cols=167  Identities=18%  Similarity=0.134  Sum_probs=99.9

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEc-CeEEEEEEEeCCCCccc---------
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-QKTIKAQIWDTAGQERY---------   73 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~---------   73 (223)
                      .+.+....++|+|+|.+|||||||+++|++...........+.+......... .....+.+|||||....         
T Consensus        22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence            34445567899999999999999999999986322222333333333333343 44567899999995332         


Q ss_pred             -cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         74 -RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        74 -~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                       ..+...+++..                                                ..+|++++++|++.+.+...
T Consensus       102 ~~~~~~~~~~~~------------------------------------------------~~~d~vi~v~d~~~~~~~~~  133 (223)
T 4dhe_A          102 WEQLLSSYLQTR------------------------------------------------PQLCGMILMMDARRPLTELD  133 (223)
T ss_dssp             HHHHHHHHHHHC------------------------------------------------TTEEEEEEEEETTSCCCHHH
T ss_pred             HHHHHHHHHhcC------------------------------------------------cCcCEEEEEEeCCCCCCHHH
Confidence             22222222220                                                12344445555444322221


Q ss_pred             hHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       ..++..+..   .++|+++|+||+|+.+.+..  ..++..+....       .+.+++++||+++.|++++|++|.+.
T Consensus       134 -~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  208 (223)
T 4dhe_A          134 -RRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESW  208 (223)
T ss_dssp             -HHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             -HHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence             122333332   36899999999998642221  11222222222       46789999999999999999999764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=3.2e-25  Score=165.37  Aligned_cols=155  Identities=17%  Similarity=0.237  Sum_probs=101.4

Q ss_pred             CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCccccc---ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc
Q psy15625          1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT   77 (223)
Q Consensus         1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~   77 (223)
                      |+|........++|+++|++|+|||||+++|.+..+...   +.++.+.+         .....+.+||+||+..+...+
T Consensus         2 ~~~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~   72 (218)
T 1nrj_B            2 SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKL   72 (218)
T ss_dssp             --------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHH
T ss_pred             CCCCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHH
Confidence            456666677789999999999999999999999876542   22322221         144578999999999998888


Q ss_pred             hhhhcC----CcEEEEEEeCC-CcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         78 SAYYRG----AVGALLVYDIA-KHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        78 ~~~~~~----~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                      ..+++.    ++++++|+|.+ +..++.....|+..+..                                         
T Consensus        73 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~-----------------------------------------  111 (218)
T 1nrj_B           73 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS-----------------------------------------  111 (218)
T ss_dssp             HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHH-----------------------------------------
T ss_pred             HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHh-----------------------------------------
Confidence            888877    89999999999 78888888766654422                                         


Q ss_pred             hHHHHHHhhhccCCCceEEEeecccchhhccCCC------hHHHHHHHHHcCCeEEEeecCCCCC
Q psy15625        153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP------ADEAKTFAERNNLSFIETSALDSTN  211 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~  211 (223)
                            ........++|+++|+||+|+.+.+...      .+++..++...+++++++||+++.+
T Consensus       112 ------~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          112 ------ITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             ------HHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             ------cccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence                  1111123478999999999997654433      3455666655566667777776643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=8e-25  Score=177.00  Aligned_cols=162  Identities=17%  Similarity=0.207  Sum_probs=111.4

Q ss_pred             CCCCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc--
Q psy15625          1 MGTREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT--   77 (223)
Q Consensus         1 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~--   77 (223)
                      |+|++......++|+|+|.+|+|||||+++|++..+.. ...+..+.+.....+.+.+.. .+.+|||||+.++..+.  
T Consensus        24 msm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~  102 (423)
T 3qq5_A           24 YTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRL  102 (423)
T ss_dssp             CCCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCC
T ss_pred             CccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHH
Confidence            66777777788999999999999999999999887632 233444445555555555443 78999999988776553  


Q ss_pred             -----hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         78 -----SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        78 -----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                           ..+++.+|++++|+|....   ....                                                 
T Consensus       103 ~~~~~~~~l~~aD~vllVvD~~~~---~~~~-------------------------------------------------  130 (423)
T 3qq5_A          103 RVEKARRVFYRADCGILVTDSAPT---PYED-------------------------------------------------  130 (423)
T ss_dssp             CHHHHHHHHTSCSEEEEECSSSCC---HHHH-------------------------------------------------
T ss_pred             HHHHHHHHHhcCCEEEEEEeCCCh---HHHH-------------------------------------------------
Confidence                 3467788888888887222   1222                                                 


Q ss_pred             hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        .|+..+...   ++|+++|+||+|+.+.+..  +..+.+....+++++++||+++.|++++|++|.+.
T Consensus       131 --~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~  193 (423)
T 3qq5_A          131 --DVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEI  193 (423)
T ss_dssp             --HHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred             --HHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence              233333332   7899999999999864443  56666667778999999999999999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=5.8e-23  Score=159.94  Aligned_cols=155  Identities=22%  Similarity=0.188  Sum_probs=101.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccc--------cccchh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERY--------RAITSA   79 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~   79 (223)
                      ....+|+++|.+|||||||+|+|++..+..... +..+.......  +......+.+|||||....        ......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            456789999999999999999999988754332 22222221222  2233568899999997753        233345


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHH
Q psy15625         80 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRE  159 (223)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  159 (223)
                      +++.+|++++|+|.++..+...  .|+                                                  +..
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~--~~i--------------------------------------------------~~~  110 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED--ELV--------------------------------------------------ARA  110 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHH--------------------------------------------------HHH
T ss_pred             HHhcCCEEEEEEECCCCCChHH--HHH--------------------------------------------------HHH
Confidence            6778888888888776544321  111                                                  122


Q ss_pred             hhhccCCCceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        160 LRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       160 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.... .+.|+++|+||+|+.+.+.    +........  ..+++++||+++.|++++++.|.+.
T Consensus       111 l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~  170 (301)
T 1wf3_A          111 LKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL  170 (301)
T ss_dssp             HGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             HHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHh
Confidence            22221 3689999999999864221    022333332  3478999999999999999999764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=4.1e-23  Score=168.91  Aligned_cols=157  Identities=19%  Similarity=0.197  Sum_probs=101.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----------ccc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----------AIT   77 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~   77 (223)
                      +..+||+++|.+|||||||+|+|++.... ....+..+.+.....+..++.  .+.+|||||+....          .++
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            45699999999999999999999988754 223343334433344445544  58999999974322          222


Q ss_pred             h-hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625         78 S-AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW  156 (223)
Q Consensus        78 ~-~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  156 (223)
                      . .+++.+|++++|+|.++..+.+..                                                    .|
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~----------------------------------------------------~~  278 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK----------------------------------------------------RI  278 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH----------------------------------------------------HH
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH----------------------------------------------------HH
Confidence            2 256667777777777666554443                                                    22


Q ss_pred             HHHhhhccCCCceEEEeecccchhhccCCChHHHHHHH-H----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        157 LRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFA-E----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       157 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...+..   .++|+++|+||+|+.+.+....++..... .    ..+++++++||++|.|++++|+.+.+.
T Consensus       279 ~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~  346 (436)
T 2hjg_A          279 AGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA  346 (436)
T ss_dssp             HHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             HHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence            332322   37899999999999765544333332222 2    236789999999999999999988754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.89  E-value=1.8e-22  Score=165.82  Aligned_cols=155  Identities=17%  Similarity=0.139  Sum_probs=90.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch--------hh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS--------AY   80 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~--------~~   80 (223)
                      ..++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++  ..+.+|||||+.++.....        .+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            3579999999999999999999987543 22334444444444555544  5789999999876554332        25


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      ++.+|++++|+|.+++.++..+..+.                                                .++..+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~------------------------------------------------~~l~~l  341 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIR------------------------------------------------ELKAAH  341 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHH------------------------------------------------HHHHHC
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHH------------------------------------------------HHHHhc
Confidence            67777777777777766654322111                                                222222


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .     ++|+++|+||+|+.+....   +.+.+......+++++||+++.|++++|++|.+.
T Consensus       342 ~-----~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~  395 (476)
T 3gee_A          342 P-----AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDL  395 (476)
T ss_dssp             T-----TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred             C-----CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHH
Confidence            2     6899999999999753322   2233444334689999999999999999998763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=9e-23  Score=167.77  Aligned_cols=158  Identities=20%  Similarity=0.220  Sum_probs=107.5

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCC----------Ccccccc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAG----------QERYRAI   76 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~   76 (223)
                      .+..++|+++|.+|+|||||+++|++.... ....+..+.+.....+..++.  .+.+|||||          ++.+..+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            345799999999999999999999977532 233333333333344445444  789999999          3444444


Q ss_pred             chh-hhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625         77 TSA-YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER  155 (223)
Q Consensus        77 ~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (223)
                      ... +++.+|++++|+|.++..+....                                                    .
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~~----------------------------------------------------~  297 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQDK----------------------------------------------------R  297 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH----------------------------------------------------H
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHHH----------------------------------------------------H
Confidence            442 56777777777777664432221                                                    2


Q ss_pred             HHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHc-----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        156 WLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERN-----NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +...+..   .++|+++|+||+|+.+.+....++..+.+.+.     +++++++||++|.|++++|+.+.+.
T Consensus       298 ~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~  366 (456)
T 4dcu_A          298 IAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA  366 (456)
T ss_dssp             HHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             HHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHH
Confidence            2222222   36899999999999876666666766666654     5789999999999999999998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.89  E-value=4.2e-22  Score=158.96  Aligned_cols=158  Identities=21%  Similarity=0.232  Sum_probs=107.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc---------cchh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA---------ITSA   79 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~   79 (223)
                      ...++|+++|.+|||||||+++|.+........+..+.......+...  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999887543333333334433333333  45789999999754321         0112


Q ss_pred             hhcCCcEEEEEEeCCCcc--cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHH
Q psy15625         80 YYRGAVGALLVYDIAKHL--TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWL  157 (223)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (223)
                      +...+|++++|+|.++..  ++....                                                   .|+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~---------------------------------------------------~~~  271 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQI---------------------------------------------------HLF  271 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHH---------------------------------------------------HHH
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHH---------------------------------------------------HHH
Confidence            334567777777766654  444444                                                   334


Q ss_pred             HHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        158 RELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       158 ~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..+..... ++|+++|+||+|+.....  .++...++...+++++++||++|+|++++|++|.+.
T Consensus       272 ~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~  333 (357)
T 2e87_A          272 EEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKT  333 (357)
T ss_dssp             HHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHH
Confidence            44433322 689999999999865332  245566666788999999999999999999998764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=6.3e-23  Score=161.95  Aligned_cols=156  Identities=18%  Similarity=0.182  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc----ccccchhhhc---CCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER----YRAITSAYYR---GAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----~~~~~~~~~~---~~~   85 (223)
                      +|+|+|.+|||||||+++|++........+..+.......+.+++. ..+.+||+||..+    +..+...+++   .++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            6899999999999999999987654444444444444444555432 4789999999543    3334444544   488


Q ss_pred             EEEEEEeCCC---cccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         86 GALLVYDIAK---HLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        86 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      ++++|+|+++   ..+++.+..|.+++.....                                                
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~------------------------------------------------  270 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNL------------------------------------------------  270 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS------------------------------------------------
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhh------------------------------------------------
Confidence            9999999887   6677777755555533211                                                


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       ...++|+++|+||+|+...    .++.+.+....+  .+++++||++++|+++++++|.+.
T Consensus       271 -~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~  327 (342)
T 1lnz_A          271 -RLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQ  327 (342)
T ss_dssp             -STTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred             -hhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHH
Confidence             0136899999999998642    245566666666  689999999999999999999764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=1.2e-21  Score=160.39  Aligned_cols=149  Identities=23%  Similarity=0.302  Sum_probs=95.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc---------cccchhhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY---------RAITSAYY   81 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~   81 (223)
                      .+|+++|.||||||||+|+|++..... ...+..+.+.....+..++.  .+.+|||||....         ..+...++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            379999999999999999999887532 33344444444445555544  6799999997542         23344567


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      +++|++++|+|..+..+.....  +                                               ..|+..  
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~--i-----------------------------------------------~~~l~~--  108 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDES--L-----------------------------------------------ADFLRK--  108 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHH--H-----------------------------------------------HHHHHH--
T ss_pred             HhCCEEEEEEECCCCCCHHHHH--H-----------------------------------------------HHHHHH--
Confidence            8888888888877654432211  1                                               122221  


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHH-HHHHHHcCC-eEEEeecCCCCCHHHHHHHHHh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEA-KTFAERNNL-SFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                          .++|+++|+||+|+....   ..+. .++. +.++ +++++||++|.|++++++++.+
T Consensus       109 ----~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~  162 (439)
T 1mky_A          109 ----STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIK  162 (439)
T ss_dssp             ----HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             ----cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHH
Confidence                268999999999986421   1222 3333 4566 6899999999999999999875

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=7.2e-22  Score=162.36  Aligned_cols=150  Identities=24%  Similarity=0.291  Sum_probs=107.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc-ccccc--------chhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE-RYRAI--------TSAY   80 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~~~~~--------~~~~   80 (223)
                      .++|+++|.||||||||+|+|++.... ....+..+.++....+.+++  ..+.+|||||.. ++...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999998643 33335445555555666654  468999999987 54421        2346


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      ++.+|++++|+|.+++.+.+...                                                    .+..+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~----------------------------------------------------il~~l  348 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK----------------------------------------------------ILERI  348 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH----------------------------------------------------HHHHH
T ss_pred             hhcccEEEEEecCCCCCCHHHHH----------------------------------------------------HHHHh
Confidence            77788888888887766654322                                                    11112


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                           .++|+++|+||+|+.+.  ...++...+. ..+.+++++||+++.|++++|++|.+.
T Consensus       349 -----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~  402 (482)
T 1xzp_A          349 -----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRE  402 (482)
T ss_dssp             -----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             -----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence                 26799999999999652  3444554443 244689999999999999999999764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.86  E-value=1.4e-21  Score=149.58  Aligned_cols=161  Identities=14%  Similarity=0.108  Sum_probs=97.3

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccc-ccccc-ceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch------
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKST-IGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS------   78 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~------   78 (223)
                      .....++|+|+|.+|||||||+++|++..... ...++ .+.+........+  ...+.+|||||+..+.....      
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            34457999999999999999999999887433 33333 3334433344343  34789999999776543222      


Q ss_pred             -----hhhcCCcEEEEEEeCCCcccH-HHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         79 -----AYYRGAVGALLVYDIAKHLTY-ENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        79 -----~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                           .+++++|++++|+|.++.... ..+.                                                 
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~-------------------------------------------------  126 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-------------------------------------------------  126 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHHHH-------------------------------------------------
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHH-------------------------------------------------
Confidence                 256788888888888752211 1111                                                 


Q ss_pred             hHHHHHHhhhccCCCceEEEeec-ccchhhccCCCh-------HHHHHHHHHcCCe---E--EEeecCCCCCHHHHHHHH
Q psy15625        153 VERWLRELRDHADQNIVIMLVGN-KSDLRHLRAVPA-------DEAKTFAERNNLS---F--IETSALDSTNVETAFQNI  219 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~~~~~i  219 (223)
                        .++....... ...|.++++| |+|+.+. .+..       ++++.+....+..   +  +++||+++.|++++|++|
T Consensus       127 --~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i  202 (260)
T 2xtp_A          127 --QRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCI  202 (260)
T ss_dssp             --HHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHH
Confidence              1111111111 1235555555 9999742 1111       2244455555532   2  789999999999999998


Q ss_pred             Hhh
Q psy15625        220 LTA  222 (223)
Q Consensus       220 ~~~  222 (223)
                      .+.
T Consensus       203 ~~~  205 (260)
T 2xtp_A          203 EDL  205 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=2.2e-21  Score=146.65  Aligned_cols=163  Identities=13%  Similarity=0.134  Sum_probs=98.6

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc--cceeeeEEEEEEEcCeEEEEEEEeCCCCcc-----------
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS--TIGVEFATRSIQVDQKTIKAQIWDTAGQER-----------   72 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-----------   72 (223)
                      ......++|+|+|.+|||||||+|+|++..+.....+  +.+..........++  ..+.+|||||...           
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence            3445679999999999999999999999887655544  333444444444444  4789999999543           


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                      +......+++++|++++|+|.++....  ...++..+                                           
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~-------------------------------------------  136 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKI-------------------------------------------  136 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHH-------------------------------------------
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHH-------------------------------------------
Confidence            222223345567788888877654331  11122211                                           


Q ss_pred             hHHHHHHhhhccCCCceEEEeecccchhhccCCC------hHHHHHHHHHcCCeEEEeecCCC-----CCHHHHHHHHHh
Q psy15625        153 VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP------ADEAKTFAERNNLSFIETSALDS-----TNVETAFQNILT  221 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~  221 (223)
                          ...+...  ...|+++|+||+|+.+.+.+.      .+.++.+..+.+..++.+++..+     .++.++|+.+.+
T Consensus       137 ----~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~  210 (239)
T 3lxx_A          137 ----LKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQR  210 (239)
T ss_dssp             ----HHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHH
Confidence                1111111  135899999999986543332      24677888888888888877643     688888887754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.86  E-value=2.2e-21  Score=151.23  Aligned_cols=156  Identities=20%  Similarity=0.206  Sum_probs=98.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCc-c--------ccccch
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQE-R--------YRAITS   78 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~-~--------~~~~~~   78 (223)
                      ....+|+++|++|||||||+|+|++..+..... +..+.......  +......+.+|||||+. .        +.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi--~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI--HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEE--EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEE--EEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            345689999999999999999999987653322 22212211222  22334578999999976 2        222233


Q ss_pred             hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHH
Q psy15625         79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLR  158 (223)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  158 (223)
                      .+++.+|++++|+|.++ -+  ....+                                                  ...
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~--~~~~~--------------------------------------------------i~~  110 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WT--PDDEM--------------------------------------------------VLN  110 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CC--HHHHH--------------------------------------------------HHH
T ss_pred             HHHhcCCEEEEEEeCCC-CC--HHHHH--------------------------------------------------HHH
Confidence            44566667777777654 21  11111                                                  111


Q ss_pred             HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .+.   ..+.|+++++||+|+.+.+....+....+....++ .++++||+++.|++++++.+.+.
T Consensus       111 ~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~  172 (301)
T 1ega_A          111 KLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKH  172 (301)
T ss_dssp             HHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTT
T ss_pred             HHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHh
Confidence            121   23689999999999864212223344555555665 69999999999999999998764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.86  E-value=3.9e-20  Score=149.84  Aligned_cols=162  Identities=17%  Similarity=0.147  Sum_probs=108.7

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEE-------EE---------EE---cCeEEEEEEEe
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR-------SI---------QV---DQKTIKAQIWD   66 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~~~D   66 (223)
                      .+..+.++|+++|.+|+|||||+++|++.......... ..+....       ..         ..   ......+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEE
Confidence            45567899999999999999999999985433211000 0000000       00         00   11236899999


Q ss_pred             CCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeeccc
Q psy15625         67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAK  146 (223)
Q Consensus        67 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  146 (223)
                      |||+..+.......+..+|++++|+|..+..+......++..+                                     
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~-------------------------------------  124 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL-------------------------------------  124 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHH-------------------------------------
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHH-------------------------------------
Confidence            9999999988888999999999999998876555554333222                                     


Q ss_pred             ccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        147 HLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERN---NLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                                    ...  ...|+++|+||+|+.+....  ..++..++....   +++++++||+++.|+++++++|.+
T Consensus       125 --------------~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~  188 (403)
T 3sjy_A          125 --------------GII--GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEE  188 (403)
T ss_dssp             --------------HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             --------------HHc--CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHH
Confidence                          211  12589999999998653211  112233333222   568999999999999999999976

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.85  E-value=8.3e-22  Score=161.18  Aligned_cols=150  Identities=17%  Similarity=0.163  Sum_probs=89.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc--------cccccchhhhcC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE--------RYRAITSAYYRG   83 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~~   83 (223)
                      .+|+++|.+|||||||+|+|++...... ..+.+.+..............+.+|||||+.        .+......+++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            6899999999999999999998776432 2344555555555555555689999999975        233444455666


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|+|..+..+....                                                    .+...+.  
T Consensus        83 ad~il~vvD~~~~~~~~d~----------------------------------------------------~~~~~l~--  108 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAADE----------------------------------------------------EVAKILY--  108 (436)
T ss_dssp             CSEEEEEEETTTCSCHHHH----------------------------------------------------HHHHHHT--
T ss_pred             CCEEEEEEeCCCCCCHHHH----------------------------------------------------HHHHHHH--
Confidence            6666666666554443221                                                    1111122  


Q ss_pred             cCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       ..++|+++|+||+|+.+.+..    ..++. +.++ +++++||++|.|++++++++.+.
T Consensus       109 -~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~  162 (436)
T 2hjg_A          109 -RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEH  162 (436)
T ss_dssp             -TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHT
T ss_pred             -HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHh
Confidence             247899999999998653211    11122 3455 68999999999999999998763

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.85  E-value=9.9e-21  Score=159.02  Aligned_cols=156  Identities=19%  Similarity=0.255  Sum_probs=106.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcc--cc-----c----c--cccceeeeEEEEEEE-----cCeEEEEEEEeCCCCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEF--NL-----E----S--KSTIGVEFATRSIQV-----DQKTIKAQIWDTAGQE   71 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~-----~----~--~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~G~~   71 (223)
                      ...+|+++|+.++|||||+++|+....  ..     .    .  ....+.++......+     ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            467999999999999999999986321  00     0    0  012233333222222     4456899999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchh
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYE  151 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  151 (223)
                      ++.......++.+|++++|+|.++..+.+....|..                                            
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~--------------------------------------------  118 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT--------------------------------------------  118 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHH--------------------------------------------
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH--------------------------------------------
Confidence            999888888999999999999988777666653322                                            


Q ss_pred             hhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCe---EEEeecCCCCCHHHHHHHHHhh
Q psy15625        152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS---FIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                             ...    .++|+++|+||+|+.+.+  ..+...++....+..   ++++||+++.|+++++++|.+.
T Consensus       119 -------~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~  179 (599)
T 3cb4_D          119 -------AME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRD  179 (599)
T ss_dssp             -------HHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHH
T ss_pred             -------HHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhc
Confidence                   221    268999999999997522  233345566666664   9999999999999999998764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.85  E-value=9.8e-22  Score=160.87  Aligned_cols=150  Identities=22%  Similarity=0.254  Sum_probs=93.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchh--------h
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSA--------Y   80 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~--------~   80 (223)
                      ..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++  ..+.+|||||..++......        +
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            35799999999999999999999876542 2234444444444455554  46799999997654433222        4


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      ++.+|++++|+|.+++.+... .                                                   .++..+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~---------------------------------------------------~i~~~l  328 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-Q---------------------------------------------------EIYEQV  328 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-H---------------------------------------------------HHHHHH
T ss_pred             hhcCCEEEEEeccCCCCCHHH-H---------------------------------------------------HHHHhc
Confidence            566777777777776554333 1                                                   222333


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .     ..|+++|+||+|+.+.....  ..+.+.  .+.+++++||+++.|+++++++|.+.
T Consensus       329 ~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~  381 (462)
T 3geh_A          329 K-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEI  381 (462)
T ss_dssp             T-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             c-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            2     36999999999997543322  111111  35679999999999999999998764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=3.2e-21  Score=148.58  Aligned_cols=180  Identities=16%  Similarity=0.196  Sum_probs=94.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccc--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY   80 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~   80 (223)
                      ...++|+++|.+|+|||||+|+|++.......        .++.+.+.....+..++..+.+.+|||||..+...     
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~-----   80 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD-----   80 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSC-----
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccccc-----
Confidence            35799999999999999999998876654433        34444444444444455567999999999643321     


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHH-----HHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc-cchhhhH
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWL-----RELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH-LTYENVE  154 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~  154 (223)
                                    +...+..+..++     ..+......          ........++|+++++++.+.. ....+ .
T Consensus        81 --------------~~~~~~~i~~~i~~~~~~~l~~~~~~----------~r~~~~d~r~~~~l~~i~~~~~~~~~~d-~  135 (274)
T 3t5d_A           81 --------------NSNCWQPVIDYIDSKFEDYLNAESRV----------NRRQMPDNRVQCCLYFIAPSGHGLKPLD-I  135 (274)
T ss_dssp             --------------CTTTTHHHHHHHHHHHHHHHHHHHSS----------CCCSCCCCCCCEEEEEECSCCSSCCHHH-H
T ss_pred             --------------chhhHHHHHHHHHHHHHHHHHhhccc----------ccccccCCceeEEEEEecCCCCCCCHHH-H
Confidence                          111222222111     111110000          0001112357788888876653 33333 2


Q ss_pred             HHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++..+..    ++|+++|+||+|+......  ..+.+.+.....+++++++|++++.|+++++++|.+.
T Consensus       136 ~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          136 EFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            34444433    7899999999998532211  1234455556678999999999999999999998764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.85  E-value=2.2e-20  Score=156.73  Aligned_cols=157  Identities=23%  Similarity=0.281  Sum_probs=108.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCc--cccc---------c--cccceeeeEE--EEEEE---cCeEEEEEEEeCCCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FNLE---------S--KSTIGVEFAT--RSIQV---DQKTIKAQIWDTAGQ   70 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~---------~--~~~~~~~~~~--~~~~~---~~~~~~~~~~D~~G~   70 (223)
                      +...+|+++|..++|||||+++|+...  +...         .  ....+.++..  ..+.+   ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            457899999999999999999998632  1100         0  0011122211  11212   445688999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccch
Q psy15625         71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTY  150 (223)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  150 (223)
                      .++.......++.+|++++|+|.++..+.+....|..                                           
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~-------------------------------------------  120 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWK-------------------------------------------  120 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHH-------------------------------------------
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHH-------------------------------------------
Confidence            9998888888999999999999998877766653322                                           


Q ss_pred             hhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC---eEEEeecCCCCCHHHHHHHHHhh
Q psy15625        151 ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL---SFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                              ...    .++|+++++||+|+.+.+  ..+...++....++   +++++||++|.|+++++++|++.
T Consensus       121 --------a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~  181 (600)
T 2ywe_A          121 --------AVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNR  181 (600)
T ss_dssp             --------HHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred             --------HHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHh
Confidence                    111    378999999999997522  22334555555666   38999999999999999998764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.85  E-value=8.2e-23  Score=169.28  Aligned_cols=157  Identities=18%  Similarity=0.208  Sum_probs=112.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ...+|+++|.+|+|||||+++|.+..+.....++++.++....+..+ ....+.+|||||+..+..++..+++.+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            45789999999999999999999887766665655554443333332 22368999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.++....+....+                                                       ......++|
T Consensus        82 VVDa~dg~~~qt~e~l-------------------------------------------------------~~~~~~~vP  106 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-------------------------------------------------------QHAKDAHVP  106 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-------------------------------------------------------HHHHTTTCC
T ss_pred             EEECCCCccHHHHHHH-------------------------------------------------------HHHHHcCCc
Confidence            9999886655444311                                                       111123689


Q ss_pred             EEEeecccchhhccCC-ChHHHHHHH---HHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAV-PADEAKTFA---ERN--NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~-~~~~~~~~~---~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++||+|+.+.... ...+...+.   ..+  .++++++||++|.|++++|+.|...
T Consensus       107 iIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l  165 (537)
T 3izy_P          107 IVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIAL  165 (537)
T ss_dssp             EEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred             EEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHh
Confidence            9999999999752221 112222211   111  2479999999999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=1.2e-20  Score=154.45  Aligned_cols=157  Identities=24%  Similarity=0.222  Sum_probs=94.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccc-cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccc----------
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAIT----------   77 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~----------   77 (223)
                      +..++|+++|++|||||||+|+|++..... ...+..+.+.....+.+++.  .+.+|||+|........          
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            346899999999999999999999886532 22233333333445555654  57899999974332221          


Q ss_pred             --hhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625         78 --SAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER  155 (223)
Q Consensus        78 --~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (223)
                        ..+++.++++++++|.++..+                                                   ..+. .
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~---------------------------------------------------~~~~-~  283 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGIT---------------------------------------------------RQDQ-R  283 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC---------------------------------------------------HHHH-H
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCC---------------------------------------------------HHHH-H
Confidence              123445555555555554333                                                   2221 1


Q ss_pred             HHHHhhhccCCCceEEEeecccchhhccCCChHHHHHH-HH----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        156 WLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTF-AE----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ....+..   .++|+++|+||+|+.+.+....++.... ..    ..+++++++||++|.|++++|+.+.+.
T Consensus       284 i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~  352 (439)
T 1mky_A          284 MAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA  352 (439)
T ss_dssp             HHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            1112221   3789999999999975433333333222 22    235789999999999999999998763

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.84  E-value=5.1e-21  Score=157.92  Aligned_cols=156  Identities=20%  Similarity=0.156  Sum_probs=104.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc-------ccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE-------FNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR   82 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   82 (223)
                      +.++|+++|.+++|||||+++|++..       ......+.++.+.....+.++  ...+.+||+||+.++.......+.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHHh
Confidence            57999999999999999999999876       222222333333333333343  358899999999888887888889


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++|+|.++...-+..+                                                    ++..+..
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e----------------------------------------------------~l~~~~~  123 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGE----------------------------------------------------HMLILDH  123 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHH----------------------------------------------------HHHHHHH
T ss_pred             hCCEEEEEEecCCCccHHHHH----------------------------------------------------HHHHHHH
Confidence            999999999988743222211                                                    0111111


Q ss_pred             ccCCCceEEEeecccchhhcc--CCChHHHHHHHHHc----CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAERN----NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         .++|+++|+||+|+.+..  ....+++..++...    +.+++++||+++.|+++++++|.+.
T Consensus       124 ---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~  186 (482)
T 1wb1_A          124 ---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITT  186 (482)
T ss_dssp             ---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHh
Confidence               257889999999986421  11234455555554    5789999999999999999998763

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.84  E-value=3.2e-20  Score=147.85  Aligned_cols=157  Identities=21%  Similarity=0.175  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc--cc------chhhhcCC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR--AI------TSAYYRGA   84 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--~~------~~~~~~~~   84 (223)
                      .|+++|.+|||||||+|+|++..+.....+..+.++....+.+++  ..+.+|||+|.....  .+      ....+..+
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~a  258 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYS  258 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhC
Confidence            499999999999999999999876544445555556666777766  467999999963211  11      11235677


Q ss_pred             cEEEEEEeCCCcc--cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         85 VGALLVYDIAKHL--TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        85 ~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      |.+++|+|.+++.  .......+                                                   ...+..
T Consensus       259 D~il~VvD~s~~~~~~~~~~~~~---------------------------------------------------~~~L~~  287 (364)
T 2qtf_A          259 DALILVIDSTFSENLLIETLQSS---------------------------------------------------FEILRE  287 (364)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHH---------------------------------------------------HHHHHH
T ss_pred             CEEEEEEECCCCcchHHHHHHHH---------------------------------------------------HHHHHH
Confidence            8888888877765  33333322                                                   222222


Q ss_pred             ccCCCceEEEeecccchhhccCC-ChHHHHHHHHHc---CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAERN---NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ....+.|+++|+||+|+.+.... ..+....++...   +.+++++||+++.|+++++++|.+.
T Consensus       288 l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~  351 (364)
T 2qtf_A          288 IGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQL  351 (364)
T ss_dssp             HTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             hCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence            22246899999999998642200 001222233443   3468999999999999999998764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=3.2e-20  Score=150.54  Aligned_cols=161  Identities=21%  Similarity=0.192  Sum_probs=98.4

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCc---ccccccc--cceeeeEEEEEEE-------------c--C----eEEEE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNE---FNLESKS--TIGVEFATRSIQV-------------D--Q----KTIKA   62 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   62 (223)
                      ...+.++|+++|..++|||||+++|++..   +.....+  ++...+....+..             +  +    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            34567999999999999999999998543   2222223  3222232222211             1  1    13689


Q ss_pred             EEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEE
Q psy15625         63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLV  141 (223)
Q Consensus        63 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (223)
                      .+||+||+..+..........+|++++|+|.++.. ..+..+ .                                    
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~------------------------------------  126 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-H------------------------------------  126 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-H------------------------------------
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-H------------------------------------
Confidence            99999999887766666677789999999988643 111111 0                                    


Q ss_pred             eecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHHH---cCCeEEEeecCCCCCHHHHH
Q psy15625        142 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAER---NNLSFIETSALDSTNVETAF  216 (223)
Q Consensus       142 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~  216 (223)
                                     +..+...  ...|+++++||+|+.+...  ...++++.++..   .+++++++||+++.|+++++
T Consensus       127 ---------------l~~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~  189 (408)
T 1s0u_A          127 ---------------LMALEIL--GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLL  189 (408)
T ss_dssp             ---------------HHHHHHT--TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHH
T ss_pred             ---------------HHHHHHc--CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHH
Confidence                           0111111  1247999999999976433  223556666654   36789999999999999999


Q ss_pred             HHHHh
Q psy15625        217 QNILT  221 (223)
Q Consensus       217 ~~i~~  221 (223)
                      ++|.+
T Consensus       190 ~~l~~  194 (408)
T 1s0u_A          190 KAIQD  194 (408)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99976

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.84  E-value=6.1e-21  Score=158.57  Aligned_cols=96  Identities=19%  Similarity=0.188  Sum_probs=67.8

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCc------------------cccccc--ccceeeeEEEEEEEcCeEEEEEEEeC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE------------------FNLESK--STIGVEFATRSIQVDQKTIKAQIWDT   67 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~   67 (223)
                      .....+|+|+|.+|+|||||+++|+...                  +.....  ...+.+.......+.+....+.+|||
T Consensus        10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT   89 (528)
T 3tr5_A           10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT   89 (528)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence            3457899999999999999999996211                  100000  01122222233334445578999999


Q ss_pred             CCCccccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625         68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVE  103 (223)
Q Consensus        68 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  103 (223)
                      ||+.++......+++.+|++++|+|.++..+.....
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~  125 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK  125 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence            999999988888999999999999999877665554

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.84  E-value=2.4e-20  Score=147.69  Aligned_cols=114  Identities=17%  Similarity=0.241  Sum_probs=90.4

Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHHhcCCceeEEEeCCCccc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH----------LTYENVERWLRELRDHADQNIVIMLVGPPSLL  128 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (223)
                      .+.+.+||++|+..++.+|..++++++++++|+|+++.          +++.....|++.+.+                 
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~-----------------  254 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN-----------------  254 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT-----------------
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc-----------------
Confidence            57899999999999999999999999999999999994          456666644443322                 


Q ss_pred             cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc---------------CCChHHHHHH
Q psy15625        129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR---------------AVPADEAKTF  193 (223)
Q Consensus       129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------------~~~~~~~~~~  193 (223)
                                                       .....+.|+++++||+|+.+.+               ....+++..+
T Consensus       255 ---------------------------------~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~  301 (353)
T 1cip_A          255 ---------------------------------NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY  301 (353)
T ss_dssp             ---------------------------------CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHH
T ss_pred             ---------------------------------CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHH
Confidence                                             1112468999999999996432               3567788877


Q ss_pred             HH-----------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        194 AE-----------RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       194 ~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.           ..++.+++|||+++.|++++|+++.+.
T Consensus       302 ~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~  341 (353)
T 1cip_A          302 IQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV  341 (353)
T ss_dssp             HHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence            76           356779999999999999999998764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.84  E-value=3.8e-20  Score=150.25  Aligned_cols=162  Identities=22%  Similarity=0.205  Sum_probs=105.0

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCc---ccccccc--cceeeeEEEEEEE-------------c--C----eEEE
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNE---FNLESKS--TIGVEFATRSIQV-------------D--Q----KTIK   61 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~   61 (223)
                      ....+.++|+++|..++|||||+++|++..   +.....+  ++...+....+..             +  +    ....
T Consensus         5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   84 (410)
T 1kk1_A            5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR   84 (410)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred             ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence            345678999999999999999999998543   2233333  3222332222211             0  1    1368


Q ss_pred             EEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEE
Q psy15625         62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALL  140 (223)
Q Consensus        62 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (223)
                      +.+||+||+.++.......+..+|++++|+|.++.. ..+..+ .                                   
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~-----------------------------------  128 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-H-----------------------------------  128 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-H-----------------------------------
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH-H-----------------------------------
Confidence            999999999887766666677789999999988643 111111 0                                   


Q ss_pred             EeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC--CChHHHHHHHHH---cCCeEEEeecCCCCCHHHH
Q psy15625        141 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA--VPADEAKTFAER---NNLSFIETSALDSTNVETA  215 (223)
Q Consensus       141 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~  215 (223)
                                      +..+...  ...|+++++||+|+.+...  ...++++.+...   .+++++++||+++.|++++
T Consensus       129 ----------------l~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L  190 (410)
T 1kk1_A          129 ----------------LMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVL  190 (410)
T ss_dssp             ----------------HHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred             ----------------HHHHHHc--CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHH
Confidence                            0111111  1357999999999865321  122344455443   3678999999999999999


Q ss_pred             HHHHHh
Q psy15625        216 FQNILT  221 (223)
Q Consensus       216 ~~~i~~  221 (223)
                      +++|.+
T Consensus       191 ~~~l~~  196 (410)
T 1kk1_A          191 VKAIED  196 (410)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.83  E-value=1e-19  Score=148.64  Aligned_cols=160  Identities=16%  Similarity=0.144  Sum_probs=103.6

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCccccc-----------------------------ccccceeeeEEEEEEEcC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFATRSIQVDQ   57 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   57 (223)
                      +....++|+++|.+|+|||||+++|+.......                             .....+++.......+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            345679999999999999999999965321100                             001123444444444555


Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc---HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccc
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT---YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRG  134 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (223)
                      ....+.+|||||+.+|.......++.+|++++|+|..+...   +....++.+.+                         
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l-------------------------  147 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA-------------------------  147 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHH-------------------------
Confidence            55689999999999998888888999999999999987532   11111111111                         


Q ss_pred             cceeEEEeecccccchhhhHHHHHHhhhccCCCce-EEEeecccchhhcc------CCChHHHHHHHHHcC------CeE
Q psy15625        135 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIV-IMLVGNKSDLRHLR------AVPADEAKTFAERNN------LSF  201 (223)
Q Consensus       135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~~------~~~  201 (223)
                                             ..+..   .++| +++++||+|+....      ....+++..++...+      +++
T Consensus       148 -----------------------~~~~~---~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~  201 (439)
T 3j2k_7          148 -----------------------MLAKT---AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHF  201 (439)
T ss_pred             -----------------------HHHHH---cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeE
Confidence                                   11111   2456 99999999985311      112234444554444      469


Q ss_pred             EEeecCCCCCHHHHHH
Q psy15625        202 IETSALDSTNVETAFQ  217 (223)
Q Consensus       202 ~~~Sa~~~~~i~~~~~  217 (223)
                      +++||++|.|++++++
T Consensus       202 i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          202 MPCSGLTGANLKEQSD  217 (439)
T ss_pred             EEeeccCCcccccccc
Confidence            9999999999998544

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.83  E-value=7.8e-21  Score=157.19  Aligned_cols=157  Identities=14%  Similarity=0.123  Sum_probs=99.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccc-----------------------------ccccceeeeEEEEEEEcCeE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFATRSIQVDQKT   59 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   59 (223)
                      .+.+||+++|.+|+|||||+++|++......                             .....++++......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            4579999999999999999999976511100                             00111334434444455566


Q ss_pred             EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHH--HHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625         60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV--ERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG  137 (223)
Q Consensus        60 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
                      ..+.+|||||+.++......+++.+|++++|+|.++......+  ..+..                              
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~------------------------------  160 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK------------------------------  160 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHH------------------------------
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHH------------------------------
Confidence            7899999999999998888999999999999999886543221  00000                              


Q ss_pred             eEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChH----HHHHHHHHc-----CCeEEEeecCC
Q psy15625        138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD----EAKTFAERN-----NLSFIETSALD  208 (223)
Q Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~----~~~~~~~~~-----~~~~~~~Sa~~  208 (223)
                                       ..+......  ...|+++|+||+|+.+.+....+    ++..+....     +++++++||++
T Consensus       161 -----------------e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~  221 (483)
T 3p26_A          161 -----------------EHMLLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFS  221 (483)
T ss_dssp             -----------------HHHHHHHHT--TCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSS
T ss_pred             -----------------HHHHHHHHc--CCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeec
Confidence                             001111111  12469999999999753222222    233333333     45799999999


Q ss_pred             CCCHHH
Q psy15625        209 STNVET  214 (223)
Q Consensus       209 ~~~i~~  214 (223)
                      |.|+++
T Consensus       222 g~gi~e  227 (483)
T 3p26_A          222 GEGVYK  227 (483)
T ss_dssp             CTTSSS
T ss_pred             CCCccc
Confidence            999975

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=2.2e-21  Score=154.75  Aligned_cols=173  Identities=19%  Similarity=0.299  Sum_probs=80.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccc-cc--------ccceeeeEEEEEEEcCeEEEEEEEeCCCCcc-------
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SK--------STIGVEFATRSIQVDQKTIKAQIWDTAGQER-------   72 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-------   72 (223)
                      ...++|+|+|++|+|||||+++|.+...... +.        ++.+.+.....+..++....+.+|||||+..       
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            4568999999999999999999876543222 11        2333333333333455567899999999732       


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCcccHHHHHHH-HHHHHHhcCCceeEEEeCCCccccccc--cccceeEEEeecccccc
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW-LRELRDHADQNIVIMLVGPPSLLRRYY--RGAVGALLVYDIAKHLT  149 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~  149 (223)
                      +..+..                      .+... ...++....            ..+...  .+.+++++.++.. ..+
T Consensus       115 ~~~i~~----------------------~i~~~~~~yl~~~~~------------~~r~~~~d~rv~~~vy~I~~~-~~~  159 (361)
T 2qag_A          115 FKTIIS----------------------YIDEQFERYLHDESG------------LNRRHIIDNRVHCCFYFISPF-GHG  159 (361)
T ss_dssp             -CCTHH----------------------HHHHHHHHHHHHHTC------------SCCC-CCCCCCCEEEEEECSS-SSS
T ss_pred             HHHHHH----------------------HHHHHHHHHHHHhhh------------hccccccCCceEEEEEEEecC-CCC
Confidence            222222                      11100 011111000            000011  1234455554432 112


Q ss_pred             hhhhH-HHHHHhhhccCCCceEEEeecccchhhccCCCh--HHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        150 YENVE-RWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA--DEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       150 ~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +..+. .++..+    ..++|+|+|+||+|+...+.+..  +++..++...+++++++||+++.+ ++.|..+.+
T Consensus       160 l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~  229 (361)
T 2qag_A          160 LKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR  229 (361)
T ss_dssp             CCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred             cchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence            22211 333333    24789999999999875443333  466666777889999999999988 666665543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.82  E-value=3.9e-20  Score=149.52  Aligned_cols=157  Identities=17%  Similarity=0.116  Sum_probs=108.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccc-------c-------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-------E-------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA   75 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~   75 (223)
                      +.+||+++|.+++|||||+++|++.....       .       .....+.+.......+......+.+|||||+.+|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            56899999999999999999998742110       0       001223344444444555556889999999988877


Q ss_pred             cchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHH
Q psy15625         76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVER  155 (223)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  155 (223)
                      ....+++.+|++++|+|.++....+....                                                   
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~---------------------------------------------------  110 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREH---------------------------------------------------  110 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHH---------------------------------------------------
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHH---------------------------------------------------
Confidence            77778889999999999987654333221                                                   


Q ss_pred             HHHHhhhccCCCce-EEEeecccchhhccC---CChHHHHHHHHHcC-----CeEEEeecCCCCC----------HHHHH
Q psy15625        156 WLRELRDHADQNIV-IMLVGNKSDLRHLRA---VPADEAKTFAERNN-----LSFIETSALDSTN----------VETAF  216 (223)
Q Consensus       156 ~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~~~  216 (223)
                       +..+..   .++| +++++||+|+.+...   ...++.++++...+     ++++++||+++.|          +.+++
T Consensus       111 -l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll  186 (397)
T 1d2e_A          111 -LLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLL  186 (397)
T ss_dssp             -HHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHH
T ss_pred             -HHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHH
Confidence             111111   2677 789999999864111   12245666666665     5899999999764          88999


Q ss_pred             HHHHh
Q psy15625        217 QNILT  221 (223)
Q Consensus       217 ~~i~~  221 (223)
                      +.|.+
T Consensus       187 ~~l~~  191 (397)
T 1d2e_A          187 DAVDT  191 (397)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=1.4e-19  Score=152.11  Aligned_cols=88  Identities=19%  Similarity=0.203  Sum_probs=61.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccccccc----ccceeeeEEEEE------------EEcCeEEEEEEEeCCCCccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK----STIGVEFATRSI------------QVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~~~D~~G~~~~   73 (223)
                      ...+|+++|++|+|||||+++|++..+.....    .+++..+.....            .+......+.+|||||+..|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            45799999999999999999999876533221    122221111000            00011125899999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCCcc
Q psy15625         74 RAITSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      ..++..+++.+|++++|+|.++..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv  107 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGF  107 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCC
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCc
Confidence            999998899999999999999843

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.82  E-value=2.3e-20  Score=151.35  Aligned_cols=159  Identities=18%  Similarity=0.150  Sum_probs=108.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhC--------ccccc-------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRN--------EFNLE-------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      ..+.++|+++|.+|+|||||+++|++.        .+...       .....+.++......+......+.+|||||+.+
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            446799999999999999999999873        11100       001223333334445555556889999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhh
Q psy15625         73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYEN  152 (223)
Q Consensus        73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  152 (223)
                      |......+++.+|++++|+|.++....+. ..+                                               
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~-----------------------------------------------  119 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REH-----------------------------------------------  119 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHH-----------------------------------------------
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHH-----------------------------------------------
Confidence            88777888899999999999887654322 211                                               


Q ss_pred             hHHHHHHhhhccCCCce-EEEeecccchhhccC---CChHHHHHHHHHcC-----CeEEEeecCCCCC------------
Q psy15625        153 VERWLRELRDHADQNIV-IMLVGNKSDLRHLRA---VPADEAKTFAERNN-----LSFIETSALDSTN------------  211 (223)
Q Consensus       153 ~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~------------  211 (223)
                          +..+..   .++| +++++||+|+.+...   ...++.+.++...+     ++++++||+++.|            
T Consensus       120 ----l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~  192 (405)
T 2c78_A          120 ----ILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGE  192 (405)
T ss_dssp             ----HHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTS
T ss_pred             ----HHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCC
Confidence                222222   2577 889999999864111   11234556666655     6799999999987            


Q ss_pred             ------HHHHHHHHHh
Q psy15625        212 ------VETAFQNILT  221 (223)
Q Consensus       212 ------i~~~~~~i~~  221 (223)
                            +.++++.|.+
T Consensus       193 ~~~~~~i~~Ll~~l~~  208 (405)
T 2c78_A          193 NEWVDKIWELLDAIDE  208 (405)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHh
Confidence                  7888888765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=1.2e-20  Score=155.22  Aligned_cols=150  Identities=17%  Similarity=0.159  Sum_probs=89.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC--------ccccccchhhhc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ--------ERYRAITSAYYR   82 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~~~~   82 (223)
                      ..+|+++|.+|||||||+|+|++..+.... .+.+.+..............+.+|||||.        ..+......+++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            468999999999999999999998765332 34455665556666666678999999993        333444445555


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++|+|..+..                                                   +..+. .+...+. 
T Consensus       102 ~ad~il~VvD~~~~~---------------------------------------------------~~~d~-~l~~~l~-  128 (456)
T 4dcu_A          102 EADVIIFMVNGREGV---------------------------------------------------TAADE-EVAKILY-  128 (456)
T ss_dssp             HCSEEEEEEESSSCS---------------------------------------------------CHHHH-HHHHHHT-
T ss_pred             hCCEEEEEEeCCCCC---------------------------------------------------ChHHH-HHHHHHH-
Confidence            666666666654422                                                   22221 1111222 


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcCC-eEEEeecCCCCCHHHHHHHHHh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNL-SFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                        ..++|+++|+||+|+.+.+.    ...++. ..+. ..+++||+++.|+.++++.+.+
T Consensus       129 --~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~  181 (456)
T 4dcu_A          129 --RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAE  181 (456)
T ss_dssp             --TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred             --HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHh
Confidence              24789999999999864221    111111 2233 4689999999999999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.81  E-value=5.4e-20  Score=134.35  Aligned_cols=93  Identities=17%  Similarity=0.287  Sum_probs=68.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccccc---ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC-
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG-   83 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~-   83 (223)
                      ..+.++|+++|.+|||||||+++|.+..+...   ..++.+         .......+.+||+||+..+...+..+++. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35678999999999999999999999876431   111111         12244578999999999888888877776 


Q ss_pred             ---CcEEEEEEeCC-CcccHHHHHHHHHHH
Q psy15625         84 ---AVGALLVYDIA-KHLTYENVERWLREL  109 (223)
Q Consensus        84 ---~~~~i~v~d~~-~~~~~~~~~~~~~~~  109 (223)
                         +|++++|+|.+ +..++..+..|+..+
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~  145 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDI  145 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHH
Confidence               89999999999 777888877666544

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.81  E-value=5.4e-20  Score=146.94  Aligned_cols=143  Identities=13%  Similarity=0.117  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      +|+++|.+++|||||+++|+        ...++.+...  ..+......+.+|||||+.+|.......++.+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998        1222222222  2344444579999999999887777778899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE-E
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI-M  171 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-i  171 (223)
                       .... ......+                                                   +..+..   .++|. +
T Consensus        93 -~~g~-~~qt~e~---------------------------------------------------~~~~~~---~~i~~~i  116 (370)
T 2elf_A           93 -PQGL-DAHTGEC---------------------------------------------------IIALDL---LGFKHGI  116 (370)
T ss_dssp             -TTCC-CHHHHHH---------------------------------------------------HHHHHH---TTCCEEE
T ss_pred             -CCCC-cHHHHHH---------------------------------------------------HHHHHH---cCCCeEE
Confidence             4432 2222222                                                   112222   24566 8


Q ss_pred             Eeec-ccchhhccCCC--hHHHHHHHHHc---CCeEEE--eecCC---CCCHHHHHHHHHhh
Q psy15625        172 LVGN-KSDLRHLRAVP--ADEAKTFAERN---NLSFIE--TSALD---STNVETAFQNILTA  222 (223)
Q Consensus       172 vv~n-K~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~--~Sa~~---~~~i~~~~~~i~~~  222 (223)
                      +++| |+|+ +.+...  .++++++....   .+++++  +||++   +.|++++++.|.+.
T Consensus       117 vvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~  177 (370)
T 2elf_A          117 IALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEV  177 (370)
T ss_dssp             EEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred             EEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhh
Confidence            8888 9998 422211  13455555444   368999  99999   99999999988753

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.81  E-value=1.4e-19  Score=147.93  Aligned_cols=155  Identities=21%  Similarity=0.181  Sum_probs=102.2

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc------------ccc-------------------ceeeeEEEEEEE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES------------KST-------------------IGVEFATRSIQV   55 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------~~~-------------------~~~~~~~~~~~~   55 (223)
                      ...+.++|+++|.+|+|||||+++|++.......            ..+                   .+++.......+
T Consensus        20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~   99 (434)
T 1zun_B           20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   99 (434)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence            3456799999999999999999999865411000            000                   112222222334


Q ss_pred             cCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCcccccccccc
Q psy15625         56 DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGA  135 (223)
Q Consensus        56 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (223)
                      ......+.+|||||+.+|......+++.+|++++|+|.++....+... +                              
T Consensus       100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~------------------------------  148 (434)
T 1zun_B          100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR-H------------------------------  148 (434)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH-H------------------------------
T ss_pred             ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-H------------------------------
Confidence            445568999999999998888888899999999999998765322221 1                              


Q ss_pred             ceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC----CChHHHHHHHHHcC-----CeEEEeec
Q psy15625        136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA----VPADEAKTFAERNN-----LSFIETSA  206 (223)
Q Consensus       136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa  206 (223)
                                           +..+...  .-.|+++|+||+|+.+...    ...++.+.++...+     ++++++||
T Consensus       149 ---------------------l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA  205 (434)
T 1zun_B          149 ---------------------SYIASLL--GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSA  205 (434)
T ss_dssp             ---------------------HHHHHHT--TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCT
T ss_pred             ---------------------HHHHHHc--CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEec
Confidence                                 1111111  1236999999999975211    02244556666667     67999999


Q ss_pred             CCCCCHHHH
Q psy15625        207 LDSTNVETA  215 (223)
Q Consensus       207 ~~~~~i~~~  215 (223)
                      ++|.|++++
T Consensus       206 ~~g~gi~~~  214 (434)
T 1zun_B          206 LKGDNVVNK  214 (434)
T ss_dssp             TTCTTTSSC
T ss_pred             cCCCCcccc
Confidence            999999873

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.81  E-value=1.7e-21  Score=160.13  Aligned_cols=155  Identities=16%  Similarity=0.216  Sum_probs=104.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ...+|+++|++++|||||+++|.+..+.....+.++.+.....  +......+.+|||||+..|..++...++.+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~--v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYH--VETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCC--CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEE--EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            4578999999999999999999987665444333333322222  22233468999999999999998888999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |+|.++....+....                                                    +....   ..++|
T Consensus        81 VVda~~g~~~qT~e~----------------------------------------------------l~~~~---~~~vP  105 (501)
T 1zo1_I           81 VVAADDGVMPQTIEA----------------------------------------------------IQHAK---AAQVP  105 (501)
T ss_dssp             EEETTTBSCTTTHHH----------------------------------------------------HHHHH---HTTCC
T ss_pred             EeecccCccHHHHHH----------------------------------------------------HHHHH---hcCce
Confidence            999877432211110                                                    01111   13689


Q ss_pred             EEEeecccchhhcc--CCChH--HHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHh
Q psy15625        170 IMLVGNKSDLRHLR--AVPAD--EAKTFAERNN--LSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +++++||+|+.+..  .+..+  +...++..++  ++++++||++|.|++++|++|..
T Consensus       106 iIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          106 VVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             EEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             EEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            99999999996421  11110  0001112222  68999999999999999999865

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.81  E-value=4.7e-19  Score=140.31  Aligned_cols=115  Identities=17%  Similarity=0.224  Sum_probs=85.2

Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHHhcCCceeEEEeCCCcc
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA----------KHLTYENVERWLRELRDHADQNIVIMLVGPPSL  127 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (223)
                      ..+.+.+|||+|+..++.++..++++++++++|||++          +.+++..+..|++.+.+.               
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~---------------  245 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---------------  245 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC---------------
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc---------------
Confidence            5688999999999999999999999999999999998          667777777555544221               


Q ss_pred             ccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC--C-------------------C
Q psy15625        128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA--V-------------------P  186 (223)
Q Consensus       128 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~-------------------~  186 (223)
                                                         ....+.|+++|+||+|+.+.+.  .                   .
T Consensus       246 -----------------------------------~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~  290 (354)
T 2xtz_A          246 -----------------------------------PCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQE  290 (354)
T ss_dssp             -----------------------------------GGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHH
T ss_pred             -----------------------------------cccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcC
Confidence                                               1124789999999999965332  1                   1


Q ss_pred             hHHHHHHHHH----------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        187 ADEAKTFAER----------------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       187 ~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++...++.+                ..+.+++|||+++.||+++|+++.+.
T Consensus       291 ~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~  342 (354)
T 2xtz_A          291 IEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDET  342 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHH
Confidence            3455555332                12346899999999999999998764

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.81  E-value=2e-20  Score=152.86  Aligned_cols=160  Identities=19%  Similarity=0.208  Sum_probs=104.2

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhC--cccccc---------------------------cccceeeeEEEEEEEcCe
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRN--EFNLES---------------------------KSTIGVEFATRSIQVDQK   58 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~   58 (223)
                      ..+.++|+++|.+|+|||||+++|+..  .+....                           ....+.+.......+...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            346799999999999999999999864  221110                           001123333333344555


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCcccccccccccee
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGA  138 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (223)
                      ...+.+|||||+.++......+++.+|++++|+|.++ .+++....|..+.++                           
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~---------------------------  134 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTRE---------------------------  134 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHH---------------------------
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHH---------------------------
Confidence            5689999999999998888889999999999999988 566655433222211                           


Q ss_pred             EEEeecccccchhhhHHHHHHhhhccCCC-ceEEEeecccchhhcc------CCChHHHHHHHHHcC-----CeEEEeec
Q psy15625        139 LLVYDIAKHLTYENVERWLRELRDHADQN-IVIMLVGNKSDLRHLR------AVPADEAKTFAERNN-----LSFIETSA  206 (223)
Q Consensus       139 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa  206 (223)
                                       .+.....   .+ .|+++++||+|+.+..      ....++++.++...+     ++++++||
T Consensus       135 -----------------~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA  194 (435)
T 1jny_A          135 -----------------HIILAKT---MGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVA  194 (435)
T ss_dssp             -----------------HHHHHHH---TTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBT
T ss_pred             -----------------HHHHHHH---cCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeec
Confidence                             1111111   13 3689999999996521      112345666666665     67999999


Q ss_pred             CCCCCHHHH
Q psy15625        207 LDSTNVETA  215 (223)
Q Consensus       207 ~~~~~i~~~  215 (223)
                      ++|.|+.++
T Consensus       195 ~~g~~v~e~  203 (435)
T 1jny_A          195 PSGDNITHK  203 (435)
T ss_dssp             TTTBTTTBC
T ss_pred             ccCcccccc
Confidence            999999743

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.80  E-value=2.6e-19  Score=139.85  Aligned_cols=115  Identities=18%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHHhcCCceeEEEeCCCcc
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA----------KHLTYENVERWLRELRDHADQNIVIMLVGPPSL  127 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (223)
                      ..+.+.+||++|+..++.++..++++++++++|+|++          +.+++.....|++.+.                 
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~-----------------  227 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII-----------------  227 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH-----------------
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh-----------------
Confidence            4578999999999999999999999999999999776          4444555544433331                 


Q ss_pred             ccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc----------------CCChHHHH
Q psy15625        128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR----------------AVPADEAK  191 (223)
Q Consensus       128 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~~  191 (223)
                                                       ......+.|+++++||+|+.+.+                ..+.+++.
T Consensus       228 ---------------------------------~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~  274 (327)
T 3ohm_A          228 ---------------------------------TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAR  274 (327)
T ss_dssp             ---------------------------------TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHH
T ss_pred             ---------------------------------hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHH
Confidence                                             11122478999999999997644                35667777


Q ss_pred             HHHH----------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        192 TFAE----------RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       192 ~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .+..          ..++.++++||+++.||+.+|+.+.+.
T Consensus       275 ~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~  315 (327)
T 3ohm_A          275 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  315 (327)
T ss_dssp             HHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence            7742          345678999999999999999998764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.80  E-value=1.2e-18  Score=138.41  Aligned_cols=114  Identities=16%  Similarity=0.221  Sum_probs=82.4

Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHHhcCCceeEEEeCCCccc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLRELRDHADQNIVIMLVGPPSLL  128 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (223)
                      .+.+.+||++|+..++..+..++++++++++|+|+++          .+++.....|++.+.+                 
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~-----------------  262 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN-----------------  262 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT-----------------
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc-----------------
Confidence            4789999999999999999999999999999999999          5677777655544422                 


Q ss_pred             cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc----------------CCChHHHHH
Q psy15625        129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR----------------AVPADEAKT  192 (223)
Q Consensus       129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------------~~~~~~~~~  192 (223)
                                                       .....+.|+++++||+|+.+.+                ..+.+++..
T Consensus       263 ---------------------------------~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~  309 (362)
T 1zcb_A          263 ---------------------------------NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK  309 (362)
T ss_dssp             ---------------------------------CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHH
T ss_pred             ---------------------------------chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHH
Confidence                                             1112478999999999997533                256677776


Q ss_pred             HHH-----------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        193 FAE-----------RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       193 ~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++.           ..++.+++|||+++.|++++|+++.+.
T Consensus       310 ~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~  350 (362)
T 1zcb_A          310 FLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT  350 (362)
T ss_dssp             HHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence            651           345778999999999999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.79  E-value=7.3e-20  Score=142.66  Aligned_cols=56  Identities=14%  Similarity=0.017  Sum_probs=37.9

Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHH--cC-CeEEEeecCCCCCHHHHHHHHHh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAER--NN-LSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      .+.|+++|+||+|+.+......+..+.....  .+ .+++++||+++.|++++|+.+.+
T Consensus       191 ~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          191 QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            4689999999999975433222222210001  12 36889999999999999998764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.1e-20  Score=155.15  Aligned_cols=157  Identities=13%  Similarity=0.113  Sum_probs=99.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-----------------------------ccceeeeEEEEEEEcCeE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-----------------------------STIGVEFATRSIQVDQKT   59 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   59 (223)
                      .+.++|+++|.+|+|||||+++|++........                             ...|++.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            457899999999999999999998663221110                             012233333333344455


Q ss_pred             EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccc
Q psy15625         60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL---TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAV  136 (223)
Q Consensus        60 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (223)
                      ..+.+|||||+..+......+++.+|++++|+|.++..   .+....++.+.+                           
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l---------------------------  297 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM---------------------------  297 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH---------------------------
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH---------------------------
Confidence            68899999999998888888899999999999987632   110011111111                           


Q ss_pred             eeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCC----hHHHHHHHHHcC-----CeEEEeecC
Q psy15625        137 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP----ADEAKTFAERNN-----LSFIETSAL  207 (223)
Q Consensus       137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~  207 (223)
                                           ......  ...|+++|+||+|+.+.+...    .+++..+....+     ++++++||+
T Consensus       298 ---------------------~~~~~l--gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~  354 (611)
T 3izq_1          298 ---------------------LLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGF  354 (611)
T ss_dssp             ---------------------HHHHTT--TCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTT
T ss_pred             ---------------------HHHHHc--CCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecc
Confidence                                 111111  124699999999987522111    223344444443     589999999


Q ss_pred             CCCCHHHH
Q psy15625        208 DSTNVETA  215 (223)
Q Consensus       208 ~~~~i~~~  215 (223)
                      +|.|+.++
T Consensus       355 tG~gI~el  362 (611)
T 3izq_1          355 SGEGVYKI  362 (611)
T ss_dssp             TCTTTSSC
T ss_pred             cCCCcccc
Confidence            99999854

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=5e-19  Score=130.93  Aligned_cols=157  Identities=20%  Similarity=0.210  Sum_probs=89.2

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc----------cccc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY----------RAIT   77 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~   77 (223)
                      .....+|+++|++|||||||++++.+..+.....++.+.+.....+.+++   .+.+||+||....          ....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            44568999999999999999999998764333344555444333333333   4689999996431          1111


Q ss_pred             hhhh---cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625         78 SAYY---RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE  154 (223)
Q Consensus        78 ~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  154 (223)
                      ..++   ..++++++++|.....+....                                                 .+.
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-------------------------------------------------~~~  130 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ-------------------------------------------------QMI  130 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH-------------------------------------------------HHH
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH-------------------------------------------------HHH
Confidence            1122   234455555555443322110                                                 011


Q ss_pred             HHHHHhhhccCCCceEEEeecccchhhcc--CCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        155 RWLRELRDHADQNIVIMLVGNKSDLRHLR--AVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+.      ..++|++++.||+|+.+..  ....+.++.++.+.+  +.++++||+++.|+++++++|.+.
T Consensus       131 ~~~~------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~  196 (210)
T 1pui_A          131 EWAV------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW  196 (210)
T ss_dssp             HHHH------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHH------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence            2221      1368999999999985421  111234555555554  568999999999999999998764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.78  E-value=5.2e-20  Score=155.15  Aligned_cols=90  Identities=22%  Similarity=0.221  Sum_probs=46.5

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc-----------------------------cccceeeeEEEEEEEcC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-----------------------------KSTIGVEFATRSIQVDQ   57 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   57 (223)
                      ...+.++|+++|.+|+|||||+++|+........                             ....+++.......+..
T Consensus       173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~  252 (592)
T 3mca_A          173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES  252 (592)
T ss_dssp             CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence            3456789999999999999999999653211000                             00123333333344444


Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      ....+.+|||||+.+|.......++.+|++++|+|.++.
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g  291 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN  291 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            556889999999999888877778888888888887653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.78  E-value=3.7e-20  Score=152.40  Aligned_cols=158  Identities=18%  Similarity=0.153  Sum_probs=89.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCc--cccc----------------------cc-----ccceeeeEEEEEEEcCe
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE--FNLE----------------------SK-----STIGVEFATRSIQVDQK   58 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~----------------------~~-----~~~~~~~~~~~~~~~~~   58 (223)
                      ..+.++|+++|..++|||||+++|+...  +...                      .+     ...+.+.......+...
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            3567899999999999999999997521  1100                      00     01122222222223333


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc---cHHHHHHHHHHHHHhcCCceeEEEeCCCcccccccccc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL---TYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGA  135 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (223)
                      ...+.+|||||+.+|.......++.+|++++|+|.++..   +++...++.+.+                          
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l--------------------------  173 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA--------------------------  173 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH--------------------------
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH--------------------------
Confidence            468899999999999888888889999999999998752   222122222211                          


Q ss_pred             ceeEEEeecccccchhhhHHHHHHhhhccCCCce-EEEeecccchhhcc------CCChHHHHHHHHHc-------CCeE
Q psy15625        136 VGALLVYDIAKHLTYENVERWLRELRDHADQNIV-IMLVGNKSDLRHLR------AVPADEAKTFAERN-------NLSF  201 (223)
Q Consensus       136 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~------~~~~~~~~~~~~~~-------~~~~  201 (223)
                                               ......++| +++++||+|+.+..      ....++...++...       ++++
T Consensus       174 -------------------------~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~  228 (467)
T 1r5b_A          174 -------------------------VLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKY  228 (467)
T ss_dssp             -------------------------HHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEE
T ss_pred             -------------------------HHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceE
Confidence                                     111113566 99999999985411      01123456666655       3569


Q ss_pred             EEeecCCCCCHHHHH
Q psy15625        202 IETSALDSTNVETAF  216 (223)
Q Consensus       202 ~~~Sa~~~~~i~~~~  216 (223)
                      +++||++|.|+.+++
T Consensus       229 i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          229 MPVSAYTGQNVKDRV  243 (467)
T ss_dssp             EECBTTTTBTTSSCC
T ss_pred             Eeccccccccccccc
Confidence            999999999998654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.78  E-value=4.7e-19  Score=155.87  Aligned_cols=159  Identities=18%  Similarity=0.141  Sum_probs=106.6

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccc-------c-------cccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN-------L-------ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~-------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      ..+.++|+++|.+++|||||+++|++....       .       ......++++......++.....+.+|||||+.+|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            445799999999999999999999874210       0       01122333433334445555668999999999988


Q ss_pred             cccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh
Q psy15625         74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV  153 (223)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  153 (223)
                      .......++.+|++++|+|.++....+... +                                                
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrE-h------------------------------------------------  403 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQTRE-H------------------------------------------------  403 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTHHH-H------------------------------------------------
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHHHH-H------------------------------------------------
Confidence            877777888999999999988754332221 1                                                


Q ss_pred             HHHHHHhhhccCCCce-EEEeecccchhhccC---CChHHHHHHHHHcC-----CeEEEeecCCC--------CCHHHHH
Q psy15625        154 ERWLRELRDHADQNIV-IMLVGNKSDLRHLRA---VPADEAKTFAERNN-----LSFIETSALDS--------TNVETAF  216 (223)
Q Consensus       154 ~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~~~  216 (223)
                         +..+..   .++| +++++||+|+.+.+.   ...++.+.++...+     ++++++||+++        .|+.+++
T Consensus       404 ---L~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLl  477 (1289)
T 3avx_A          404 ---ILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELA  477 (1289)
T ss_dssp             ---HHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHH
T ss_pred             ---HHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhH
Confidence               111221   1567 789999999964211   12245666666665     57999999999        4689999


Q ss_pred             HHHHh
Q psy15625        217 QNILT  221 (223)
Q Consensus       217 ~~i~~  221 (223)
                      +.|.+
T Consensus       478 eaL~~  482 (1289)
T 3avx_A          478 GFLDS  482 (1289)
T ss_dssp             HHHHH
T ss_pred             hHHhh
Confidence            98875

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.77  E-value=4.2e-18  Score=145.52  Aligned_cols=93  Identities=15%  Similarity=0.135  Sum_probs=65.2

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc----------------cceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS----------------TIGVEFATRSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~   70 (223)
                      ..+...+|+++|+.|+|||||+++|++.........                ..+.++......+....+.+++|||||+
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~   84 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY   84 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence            345678999999999999999999985432110000                1122222233334444678999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCCcccH
Q psy15625         71 ERYRAITSAYYRGAVGALLVYDIAKHLTY   99 (223)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~   99 (223)
                      .++......+++.+|++++|+|.++....
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~  113 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQV  113 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCH
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccch
Confidence            99888888889999999999998765543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.77  E-value=1.7e-19  Score=148.06  Aligned_cols=155  Identities=14%  Similarity=0.118  Sum_probs=99.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCc--cccc----------------------cc-----ccceeeeEEEEEEEcCeE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNE--FNLE----------------------SK-----STIGVEFATRSIQVDQKT   59 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~   59 (223)
                      .+.++|+++|.+|+|||||+++|++..  +...                      .+     ...+.+.......+....
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            467999999999999999999998641  1110                      00     011222222223344455


Q ss_pred             EEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc---HHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccc
Q psy15625         60 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT---YENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAV  136 (223)
Q Consensus        60 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (223)
                      ..+.+|||||+.+|......+++.+|++++|+|.++...   ++...+..+.                            
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~----------------------------  136 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREH----------------------------  136 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHH----------------------------
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHH----------------------------
Confidence            689999999999988888888999999999999876431   1100011111                            


Q ss_pred             eeEEEeecccccchhhhHHHHHHhhhccCCCc-eEEEeecccchhhccC----CChHHHHHHHHHcC-----CeEEEeec
Q psy15625        137 GALLVYDIAKHLTYENVERWLRELRDHADQNI-VIMLVGNKSDLRHLRA----VPADEAKTFAERNN-----LSFIETSA  206 (223)
Q Consensus       137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa  206 (223)
                                          +.....   .++ ++++++||+|+.+...    ...++++.++...+     ++++++||
T Consensus       137 --------------------~~~~~~---~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA  193 (458)
T 1f60_A          137 --------------------ALLAFT---LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISG  193 (458)
T ss_dssp             --------------------HHHHHH---TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCT
T ss_pred             --------------------HHHHHH---cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeec
Confidence                                111111   245 4999999999973110    12234555656555     67999999


Q ss_pred             CCCCCHHH
Q psy15625        207 LDSTNVET  214 (223)
Q Consensus       207 ~~~~~i~~  214 (223)
                      ++|.|+.+
T Consensus       194 ~~g~nv~~  201 (458)
T 1f60_A          194 WNGDNMIE  201 (458)
T ss_dssp             TTCBTTTB
T ss_pred             ccCcCccc
Confidence            99999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.77  E-value=3.7e-18  Score=137.71  Aligned_cols=157  Identities=18%  Similarity=0.181  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc----cccchhh---hcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY----RAITSAY---YRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~~~~---~~~~~   85 (223)
                      .|+|+|++|||||||++++++........+..+.......+..++ ...+.+||+||..+.    ..+...+   .+.++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            489999999999999999998754333333333344444444443 246899999997432    2232222   45688


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      .++.++|++ ...+..+..+.+++..+..                                            .+     
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~--------------------------------------------aL-----  267 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDP--------------------------------------------AL-----  267 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCH--------------------------------------------HH-----
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhH--------------------------------------------Hh-----
Confidence            999999987 5556666655554422110                                            01     


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...|.++++||+|+...  ...+++.......+.+++.+||++++|+++++++|.+.
T Consensus       268 ~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~  322 (416)
T 1udx_A          268 LRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL  322 (416)
T ss_dssp             HHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHH
Confidence            14688999999998652  12334445555567899999999999999999998764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.77  E-value=5.8e-19  Score=142.06  Aligned_cols=99  Identities=21%  Similarity=0.227  Sum_probs=56.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEE--EE-------------------EcC-eEEEEEEEeCCC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS--IQ-------------------VDQ-KTIKAQIWDTAG   69 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~~~D~~G   69 (223)
                      ++|+++|.||||||||+|+|++........+..+.+.....  +.                   +++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999988743233332222222221  11                   122 256899999999


Q ss_pred             Ccc----ccccch---hhhcCCcEEEEEEeCCCc-----------ccHHHHHHHHHHHH
Q psy15625         70 QER----YRAITS---AYYRGAVGALLVYDIAKH-----------LTYENVERWLRELR  110 (223)
Q Consensus        70 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~-----------~~~~~~~~~~~~~~  110 (223)
                      ...    ...+..   .+++.+|++++|+|.++.           +....+..+..++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~  139 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREID  139 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHH
Confidence            753    222222   357899999999999886           55666665555554

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.76  E-value=1.4e-17  Score=127.39  Aligned_cols=86  Identities=19%  Similarity=0.159  Sum_probs=58.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc------
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR------   82 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------   82 (223)
                      ..++|+++|.+|+|||||+++|++........ +..+.......+..  ....+.+|||||+.++......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            57999999999999999999999987533222 22223333333333  3448899999999887665554443      


Q ss_pred             ---CCcEEEEEEeCCCcc
Q psy15625         83 ---GAVGALLVYDIAKHL   97 (223)
Q Consensus        83 ---~~~~~i~v~d~~~~~   97 (223)
                         ++|++++|+++....
T Consensus       113 ~~~~~~~il~V~~~d~~~  130 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA  130 (262)
T ss_dssp             TTCEECEEEEEEESSCSC
T ss_pred             hcCCCCEEEEEEcCCCCC
Confidence               566777776665433

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.76  E-value=2.7e-18  Score=134.66  Aligned_cols=118  Identities=17%  Similarity=0.190  Sum_probs=86.9

Q ss_pred             EcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCC----------CcccHHHHHHHHHHHHHhcCCceeEEEeCC
Q psy15625         55 VDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIA----------KHLTYENVERWLRELRDHADQNIVIMLVGP  124 (223)
Q Consensus        55 ~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (223)
                      +....+.+.+||++|+..++.++..++++++++++|+|++          +.+++.....|++.+.+             
T Consensus       156 ~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~-------------  222 (340)
T 4fid_A          156 FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT-------------  222 (340)
T ss_dssp             EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH-------------
T ss_pred             EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh-------------
Confidence            3334578999999999999999999999999999999998          55666666655444322             


Q ss_pred             CccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc---------------CCChHH
Q psy15625        125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR---------------AVPADE  189 (223)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~---------------~~~~~~  189 (223)
                                                           .....+.|+++++||+|+.+.+               ....++
T Consensus       223 -------------------------------------~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~  265 (340)
T 4fid_A          223 -------------------------------------NEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVM  265 (340)
T ss_dssp             -------------------------------------CGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHH
T ss_pred             -------------------------------------hhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHH
Confidence                                                 1122478999999999986421               123445


Q ss_pred             HHHHHHH---------------------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        190 AKTFAER---------------------------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       190 ~~~~~~~---------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +..+...                           .++.++++||++..|++.+|+.+.+.
T Consensus       266 a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~  325 (340)
T 4fid_A          266 GAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDV  325 (340)
T ss_dssp             HHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHH
Confidence            5444332                           23568899999999999999988764

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=1.3e-17  Score=142.93  Aligned_cols=98  Identities=16%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCccc--------ccc---c-----ccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFN--------LES---K-----STIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~--------~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      .+...+|+|+|.+|+|||||+++|+.....        ...   +     ...+.+.......+......+.+|||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            356799999999999999999999842110        000   0     011122222222233345689999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERW  105 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  105 (223)
                      ++......+++.+|++++|+|.++..+......|
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~  122 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW  122 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH
Confidence            9888888899999999999999988776665533

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.75  E-value=8.7e-18  Score=139.82  Aligned_cols=98  Identities=19%  Similarity=0.214  Sum_probs=65.5

Q ss_pred             CCCCcc--ccceeEEEEEEcCCCCcHHHHHHHHhhCccccc---------------c-----cccceeeeEEEEEEEcCe
Q psy15625          1 MGTRED--EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE---------------S-----KSTIGVEFATRSIQVDQK   58 (223)
Q Consensus         1 ~~~~~~--~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~---------------~-----~~~~~~~~~~~~~~~~~~   58 (223)
                      |.|..-  +.....+|+++|.+|+|||||+++|+.......               .     ....+.+.......+.+.
T Consensus         1 m~m~~l~~~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~   80 (529)
T 2h5e_A            1 MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH   80 (529)
T ss_dssp             --CCTHHHHHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET
T ss_pred             CchhhhhhhhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC
Confidence            444442  334579999999999999999999986421110               0     011122222222334445


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCccc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLT   98 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~   98 (223)
                      ...+.+|||||+.++......+++.+|++++|+|.++...
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~  120 (529)
T 2h5e_A           81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE  120 (529)
T ss_dssp             TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence            5789999999999988888888999999999999987644

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.74  E-value=3.5e-17  Score=140.41  Aligned_cols=31  Identities=23%  Similarity=0.445  Sum_probs=26.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE   39 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~   39 (223)
                      ...++|+|+|.+|+|||||+|+|++..+.+.
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v   97 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPS   97 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            4578999999999999999999999876443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.74  E-value=1.6e-17  Score=127.69  Aligned_cols=86  Identities=16%  Similarity=0.097  Sum_probs=55.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh--------
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY--------   80 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~--------   80 (223)
                      ...++|+++|.+|+|||||+|+|++..+..... ..+.+.......+......+.+|||||+.++......+        
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            357999999999999999999999887643221 12222222233344445689999999987665433211        


Q ss_pred             -hcCCcEEEEEEeCCC
Q psy15625         81 -YRGAVGALLVYDIAK   95 (223)
Q Consensus        81 -~~~~~~~i~v~d~~~   95 (223)
                       .+.+|++++|+|...
T Consensus       116 ~~~~~d~il~v~~~d~  131 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDA  131 (270)
T ss_dssp             TTCEECEEEEEEESSC
T ss_pred             hcCCCCEEEEEEeCCC
Confidence             235666666666644

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.73  E-value=2.6e-18  Score=137.31  Aligned_cols=59  Identities=8%  Similarity=-0.004  Sum_probs=41.2

Q ss_pred             HhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHH
Q psy15625        159 ELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQ  217 (223)
Q Consensus       159 ~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  217 (223)
                      .+......+.|+++|+||+|+.+......+....+....+.+++.+|++++.++++.++
T Consensus       195 l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~  253 (360)
T 3t34_A          195 ISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVD  253 (360)
T ss_dssp             HHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCC
T ss_pred             HHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCC
Confidence            33444445789999999999976554444444444445677899999999988876543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.73  E-value=2e-18  Score=134.44  Aligned_cols=178  Identities=19%  Similarity=0.224  Sum_probs=83.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhC-ccccccc--------ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccch
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRN-EFNLESK--------STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITS   78 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~   78 (223)
                      .+..++|+|+|++|||||||+++|.+. .++....        ++.+........+..+....+.+||++|........ 
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~-   93 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR-   93 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH-
Confidence            345689999999999999999998875 3333221        111111111122223445689999999964221000 


Q ss_pred             hhhcCCcEEEEEEeCCCcccHHHHH----HHHHHHHHhcCCceeEEEeCCCcccc--ccccccceeEEEeecccc-cchh
Q psy15625         79 AYYRGAVGALLVYDIAKHLTYENVE----RWLRELRDHADQNIVIMLVGPPSLLR--RYYRGAVGALLVYDIAKH-LTYE  151 (223)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~-~~~~  151 (223)
                                   +... .-...+.    .++..+.               +..+  ....+++++++..+++.+ ....
T Consensus        94 -------------e~~~-~l~~~l~~~~~~~~~~~s---------------gg~rqrv~~ara~~ll~ldePt~~~Ld~~  144 (301)
T 2qnr_A           94 -------------DCFK-TIISYIDEQFERYLHDES---------------GLNRRHIIDNRVHCCFYFISPFGHGLKPL  144 (301)
T ss_dssp             ---------------CT-THHHHHHHHHHHHHHHHT---------------SSCCTTCCCCCCCEEEEEECSSSSSCCHH
T ss_pred             -------------HHHH-HHHHHHHHHHHHHHHHhC---------------HHhhhhhhhhhhhheeeeecCcccCCCHH
Confidence                         0000 0011111    1122211               1111  112234456666665443 3333


Q ss_pred             hhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        152 NVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +.    ..+.... .+.|+++|+||+|+...++.  ..+++++++..++++++++||+++ +++++|..+.+
T Consensus       145 ~~----~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~  210 (301)
T 2qnr_A          145 DV----AFMKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTR  210 (301)
T ss_dssp             HH----HHHHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHH
T ss_pred             HH----HHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHH
Confidence            31    2222222 36799999999998653322  345778888889999999999999 99999988765

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.72  E-value=2.3e-17  Score=129.43  Aligned_cols=28  Identities=29%  Similarity=0.503  Sum_probs=25.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      ....+|+|+|.+|||||||+|+|++..+
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            4567999999999999999999999876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.71  E-value=2.7e-16  Score=124.33  Aligned_cols=187  Identities=17%  Similarity=0.148  Sum_probs=101.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe---------------EEEEEEEeCCCCcccc--
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK---------------TIKAQIWDTAGQERYR--   74 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~--   74 (223)
                      ++|+++|.||||||||+|+|++..+.....+..+.+.....+.+++.               ...+.+||+||..++.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999998754444343334433334444442               1478999999987643  


Q ss_pred             --cc---chhhhcCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHHh----cCCceeEEE--e-CCCc------
Q psy15625         75 --AI---TSAYYRGAVGALLVYDIAKH----------LTYENVERWLRELRDH----ADQNIVIML--V-GPPS------  126 (223)
Q Consensus        75 --~~---~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~----~~~~~~~~~--~-~~~~------  126 (223)
                        .+   ...+++.+|++++|+|+++.          +.+..+..+..++.-.    .........  . +...      
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              22   23358999999999999873          3455555444444210    000000000  0 0000      


Q ss_pred             -cccc---cccccceeEEEeeccc-ccchhhhHHHHHHhhhcc-CCCceEEEeecccchhhccCCChHHHHHHHHHcCCe
Q psy15625        127 -LLRR---YYRGAVGALLVYDIAK-HLTYENVERWLRELRDHA-DQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLS  200 (223)
Q Consensus       127 -~~~~---~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  200 (223)
                       ...+   .+.....      ++. .++.+.    ...+.... ...+|+++++|+.|..-......+.++.++...+.+
T Consensus       163 ~~l~~~~~~L~~~~~------~~~~~~~~~e----~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~  232 (363)
T 1jal_A          163 SVMEKILPVLENAGM------IRSVGLDKEE----LQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAV  232 (363)
T ss_dssp             HHHHHHHHHHHTTCC------GGGSCCCHHH----HHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHhcCCC------ccccCCCHHH----HHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCC
Confidence             0000   0000000      000 111111    11222222 235899999999996421123456777888888999


Q ss_pred             EEEeecCC
Q psy15625        201 FIETSALD  208 (223)
Q Consensus       201 ~~~~Sa~~  208 (223)
                      ++++||+.
T Consensus       233 ~i~~sA~~  240 (363)
T 1jal_A          233 VVPVCAAI  240 (363)
T ss_dssp             EEEECHHH
T ss_pred             EEEechHH
Confidence            99999765

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.8e-17  Score=133.85  Aligned_cols=182  Identities=16%  Similarity=0.212  Sum_probs=84.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccc--------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchh
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSA   79 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~   79 (223)
                      .+..++|+|+|++|||||||++.|.+..+....        .++.+.......++..+....+.+||++|.......   
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---  104 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---  104 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc---
Confidence            345689999999999999999999987763221        111111111111122334457899999996543110   


Q ss_pred             hhcCCcEEEEEEeCCCcccHHHHHHHH-HHHHHhcCCceeEEEeCCCcccccccc--ccceeEEEeecc-cccchhhhHH
Q psy15625         80 YYRGAVGALLVYDIAKHLTYENVERWL-RELRDHADQNIVIMLVGPPSLLRRYYR--GAVGALLVYDIA-KHLTYENVER  155 (223)
Q Consensus        80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~-~~~~~~~~~~  155 (223)
                                      ...+..+..++ ..+...-.....        ..+.+..  +++++++..+++ ++.+..+ ..
T Consensus       105 ----------------~~~~~~i~~~i~~~~~~~l~qr~~--------IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~  159 (418)
T 2qag_C          105 ----------------SNCWQPVIDYIDSKFEDYLNAESR--------VNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IE  159 (418)
T ss_dssp             -------------------CHHHHHHHHHHHHHHTTTSCC---------CCCCCCCC-CCEEEEECCC-CCSCCHHH-HH
T ss_pred             ----------------hhhHHHHHHHHHHHHHHHHHHHHH--------HHHHhccCCCeeEEEEEecCcccCCCHHH-HH
Confidence                            00111111111 111111111111        1112223  344566666654 3444333 24


Q ss_pred             HHHHhhhccCCCceEEEeecccchhhccCCCh--HHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        156 WLRELRDHADQNIVIMLVGNKSDLRHLRAVPA--DEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       156 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      |+..+.    .++|+|+|+||+|+...+.+..  ++++..+..++++++++|++++.++.++|..+.+
T Consensus       160 ~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          160 FMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             HHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred             HHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence            555553    2789999999999865333333  5677777788999999999999999998877654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.69  E-value=7e-16  Score=132.50  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=66.1

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCc--ccc------c---cc-----ccceeeeEEEEEEEc-------CeEEEEEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE--FNL------E---SK-----STIGVEFATRSIQVD-------QKTIKAQI   64 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~--~~~------~---~~-----~~~~~~~~~~~~~~~-------~~~~~~~~   64 (223)
                      .+...+|+|+|..|+|||||+++|+...  +..      .   .+     ...+.+.......+.       +..+.+.+
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3457899999999999999999997531  110      0   00     011222222222222       23378999


Q ss_pred             EeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625         65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVE  103 (223)
Q Consensus        65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  103 (223)
                      |||||+.+|......+++.+|++++|+|.++........
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~  125 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET  125 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH
Confidence            999999998888888999999999999998876554443

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.69  E-value=2.5e-16  Score=135.11  Aligned_cols=98  Identities=14%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhC--cccc---cccc-----------cceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRN--EFNL---ESKS-----------TIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~--~~~~---~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      .+...+|+++|.+|+|||||+++|+..  .+..   ....           ..+.+.......+......+.+|||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            355789999999999999999999852  1110   0000           01111111122233335689999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625         72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERW  105 (223)
Q Consensus        72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  105 (223)
                      ++......+++.+|++++|+|.++..+......|
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~  120 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW  120 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH
Confidence            9888888889999999999999887776665533

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.67  E-value=1.5e-16  Score=118.50  Aligned_cols=56  Identities=16%  Similarity=0.088  Sum_probs=44.5

Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.|+++|+||+|+.+......++....+...  +++++++||+++.|++++|++|.+.
T Consensus       154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~  211 (221)
T 2wsm_A          154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGI  211 (221)
T ss_dssp             HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence            4788999999999764444566666666554  4789999999999999999998763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.67  E-value=3.8e-17  Score=127.27  Aligned_cols=133  Identities=16%  Similarity=0.157  Sum_probs=104.0

Q ss_pred             HHHHHHhhCccc-ccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc-cHHHHH
Q psy15625         26 NLLSRFTRNEFN-LESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL-TYENVE  103 (223)
Q Consensus        26 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~  103 (223)
                      +|+.++..+.+. ..+.++++..+ ...  +.... .+.+||+  ++.+..++..+++++|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRV-EYT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEE-EEE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEE-EEE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888887 77889988444 333  22222 6899999  8889999999999999999999999987 677777


Q ss_pred             HHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhcc
Q psy15625        104 RWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLR  183 (223)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~  183 (223)
                      .|+..+                                                   ..   .++|+++|+||+|+.+.+
T Consensus       106 ~~l~~~---------------------------------------------------~~---~~~piilv~NK~DL~~~~  131 (301)
T 1u0l_A          106 KFLVLA---------------------------------------------------EK---NELETVMVINKMDLYDED  131 (301)
T ss_dssp             HHHHHH---------------------------------------------------HH---TTCEEEEEECCGGGCCHH
T ss_pred             HHHHHH---------------------------------------------------HH---CCCCEEEEEeHHHcCCch
Confidence            555433                                                   22   368999999999996533


Q ss_pred             CCChHHHHHHHHHcC--CeEEEeecCCCCCHHHHHHHHH
Q psy15625        184 AVPADEAKTFAERNN--LSFIETSALDSTNVETAFQNIL  220 (223)
Q Consensus       184 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~  220 (223)
                      .+  ++.+.++...+  .+++++||+++.|++++|+.+.
T Consensus       132 ~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          132 DL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             hH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            22  45667777777  8999999999999999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.3e-15  Score=121.19  Aligned_cols=193  Identities=19%  Similarity=0.162  Sum_probs=118.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-------cchhhhcC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-------ITSAYYRG   83 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~   83 (223)
                      ..+|+++|.||||||||+|+|++........+..+.+.....+.+++.  .+.++|+||..+...       .....++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            468999999999999999999998877777787777887777777664  679999999643221       12235788


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhc------CCceeEEEeCCCcc-------------------cccccccccee
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHA------DQNIVIMLVGPPSL-------------------LRRYYRGAVGA  138 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-------------------~~~~~~~~~~~  138 (223)
                      +|++++|+|.+++..  .......++....      +..+.+.-.+..+.                   ...+.-....+
T Consensus       150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv  227 (376)
T 4a9a_A          150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI  227 (376)
T ss_dssp             CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred             cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence            999999999998643  2222233333321      11111111111100                   00112233444


Q ss_pred             EEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHH
Q psy15625        139 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQN  218 (223)
Q Consensus       139 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  218 (223)
                      +++.+++..       .....+........|.+++.||+|..     ..++...+..  ...++++|+..+.|++++...
T Consensus       228 ~~~~nv~ed-------dl~d~~~~~~~~~~p~i~v~nKid~~-----~~eele~l~~--~~~~~~is~~~e~gLd~Li~~  293 (376)
T 4a9a_A          228 AFRCDATVD-------DLIDVLEASSRRYMPAIYVLNKIDSL-----SIEELELLYR--IPNAVPISSGQDWNLDELLQV  293 (376)
T ss_dssp             EECSCCCHH-------HHHHHHTTTTCEEECEEEEEECGGGS-----CHHHHHHHTT--STTEEECCTTTCTTHHHHHHH
T ss_pred             eecccCCHH-------HHHHHHHHHHhhccceEEEEeccccc-----CHHHHHHHhc--ccchhhhhhhhcccchhHHHH
Confidence            444443322       12222333333468999999999964     3344444322  224789999999999998887


Q ss_pred             HHh
Q psy15625        219 ILT  221 (223)
Q Consensus       219 i~~  221 (223)
                      +.+
T Consensus       294 ~y~  296 (376)
T 4a9a_A          294 MWD  296 (376)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.65  E-value=6.1e-18  Score=134.51  Aligned_cols=84  Identities=18%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC-------------------eEEEEEEEeCCCCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ-------------------KTIKAQIWDTAGQER   72 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~G~~~   72 (223)
                      ++|+++|.||||||||+|+|++........+..+.........+..                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5799999999999999999998753222223222222222222321                   235789999999765


Q ss_pred             cc----ccc---hhhhcCCcEEEEEEeCCC
Q psy15625         73 YR----AIT---SAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        73 ~~----~~~---~~~~~~~~~~i~v~d~~~   95 (223)
                      ..    .+.   ...++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            43    222   235799999999999986

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.65  E-value=2.3e-17  Score=131.37  Aligned_cols=57  Identities=16%  Similarity=0.085  Sum_probs=37.3

Q ss_pred             CCCceEEEeecccchhhccCCChHHHHH--HHHHcC-CeEEEeecCCCCCHHHHHHHHHh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKT--FAERNN-LSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ..+.|+++|+||+|+.+......+..+.  +....+ .+++++||+++.|++++++.+.+
T Consensus       195 ~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          195 PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3478999999999997533211111110  000123 25788999999999999988764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.64  E-value=1.4e-16  Score=126.81  Aligned_cols=56  Identities=16%  Similarity=0.187  Sum_probs=38.1

Q ss_pred             CceEEEeecccchhhccCCC--hHHHHHHHHH-------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVP--ADEAKTFAER-------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.|+++|+||+|+.+.....  .++.......       ++.+++++||+++.|+++++++|.+.
T Consensus       217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~  281 (355)
T 3p32_A          217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERH  281 (355)
T ss_dssp             GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999986422111  1122222111       15689999999999999999998753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.63  E-value=3.9e-15  Score=111.23  Aligned_cols=56  Identities=16%  Similarity=0.112  Sum_probs=46.0

Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.|.++|+||+|+.+.+....++...++...  +++++++||+++.|++++|++|.+.
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~  221 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKS  221 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence            4688999999999865545667777777654  5789999999999999999998753

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.61  E-value=4.8e-15  Score=118.74  Aligned_cols=114  Identities=17%  Similarity=0.202  Sum_probs=86.5

Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCC----------cccHHHHHHHHHHHHHhcCCceeEEEeCCCccc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLRELRDHADQNIVIMLVGPPSLL  128 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (223)
                      .+.+.+||++|+..++.++..++++++++++|||+++          .+++..+..|++.+.+.                
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~----------------  279 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN----------------  279 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC----------------
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc----------------
Confidence            4789999999999999999999999999999999999          77787777555544221                


Q ss_pred             cccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccC---C--------------------
Q psy15625        129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA---V--------------------  185 (223)
Q Consensus       129 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~---~--------------------  185 (223)
                                                        ....++|+++|+||+|+...+.   .                    
T Consensus       280 ----------------------------------~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~  325 (402)
T 1azs_C          280 ----------------------------------RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  325 (402)
T ss_dssp             ----------------------------------TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCC
T ss_pred             ----------------------------------ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccc
Confidence                                              1224789999999999865322   1                    


Q ss_pred             -------ChHHHHHHH-----HH--------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        186 -------PADEAKTFA-----ER--------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       186 -------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                             ..+++..++     ..        .++.++++||+++.||+++|+.+.+.
T Consensus       326 ~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~  382 (402)
T 1azs_C          326 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDI  382 (402)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHH
Confidence                   124444443     21        24567899999999999999987653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.60  E-value=6.5e-15  Score=123.10  Aligned_cols=96  Identities=18%  Similarity=0.160  Sum_probs=67.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcc------------------cccc--cccceeeeEEEEEEEcCeEEEEEEEeCCC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEF------------------NLES--KSTIGVEFATRSIQVDQKTIKAQIWDTAG   69 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G   69 (223)
                      ...+|+|+|..++|||||..+|+...-                  ....  ...-++++......+.++...++++||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            457899999999999999999963210                  0000  01112233333444555667899999999


Q ss_pred             CccccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625         70 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW  105 (223)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  105 (223)
                      +.+|..-....++-+|++++|+|....-..+....|
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~  145 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM  145 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH
Confidence            999999999999999999999999887776666544

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.59  E-value=2e-14  Score=125.79  Aligned_cols=95  Identities=17%  Similarity=0.211  Sum_probs=68.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccc----------------cccccee--eeEEEEEE------------EcCe
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGV--EFATRSIQ------------VDQK   58 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------------~~~~~~~--~~~~~~~~------------~~~~   58 (223)
                      +...||+|+|.+|+|||||+++|+.......                ..+.+++  ......+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            4568999999999999999999987421110                0111111  11112222            1334


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVE  103 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  103 (223)
                      .+.+++|||||+.+|......+++.+|++++|+|..+..+.+...
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~  141 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET  141 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence            788999999999999999999999999999999999987776654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=116.23  Aligned_cols=88  Identities=15%  Similarity=0.138  Sum_probs=52.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCe---------------EEEEEEEeCCCCccccc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQK---------------TIKAQIWDTAGQERYRA   75 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~~   75 (223)
                      ..+|+++|.+|||||||+|+|++..+.....++.+.++....+.+++.               ...+.+||+||.....+
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            478999999999999999999998765555555555555555555432               23589999999766443


Q ss_pred             -------cchhhhcCCcEEEEEEeCCCccc
Q psy15625         76 -------ITSAYYRGAVGALLVYDIAKHLT   98 (223)
Q Consensus        76 -------~~~~~~~~~~~~i~v~d~~~~~~   98 (223)
                             ....+++.+|++++|+|+++..+
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence                   34567899999999999986544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.56  E-value=8.5e-15  Score=116.19  Aligned_cols=55  Identities=11%  Similarity=0.086  Sum_probs=36.3

Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHH----------HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAE----------RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ..|.++|+||+|+.+.... ......+..          .++.+++.+||+++.|+++++++|.+.
T Consensus       212 ~~~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~  276 (349)
T 2www_A          212 EMADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF  276 (349)
T ss_dssp             CSCSEEEECCCSGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hcCCEEEEeeecCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence            3577999999998642110 011112211          124578999999999999999998763

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.54  E-value=1.8e-14  Score=120.52  Aligned_cols=31  Identities=19%  Similarity=0.360  Sum_probs=27.1

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFN   37 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~   37 (223)
                      ..+...+|+|+|.+|+|||||+|+|++..+.
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~   91 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVP   91 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence            3456789999999999999999999998864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.54  E-value=2.2e-15  Score=119.31  Aligned_cols=55  Identities=16%  Similarity=0.200  Sum_probs=36.8

Q ss_pred             CceEEEeecccchhhccCCCh--HHHHHHHHHc-------CCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPA--DEAKTFAERN-------NLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +.|.++|+||+|+.+......  ++.+......       ..+++++||+++.|+++++++|.+
T Consensus       194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~  257 (341)
T 2p67_A          194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID  257 (341)
T ss_dssp             HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHH
Confidence            468899999999864211110  1222211121       457899999999999999999876

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.49  E-value=1.7e-14  Score=122.80  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=66.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc--------ccc---cc-----ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF--------NLE---SK-----STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA   75 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~--------~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~   75 (223)
                      .||+|+|+.++|||||..+|+...-        ...   .+     ..-++++......+.+....++++|||||.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            5799999999999999999964211        000   00     0113344444445666777899999999999999


Q ss_pred             cchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625         76 ITSAYYRGAVGALLVYDIAKHLTYENVE  103 (223)
Q Consensus        76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~  103 (223)
                      -....++-+|++++|+|....-..+.-.
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~  110 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRI  110 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHH
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHH
Confidence            8999999999999999988765544443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.46  E-value=3.7e-13  Score=102.68  Aligned_cols=24  Identities=13%  Similarity=-0.039  Sum_probs=21.6

Q ss_pred             CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        199 LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       199 ~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .+++++||+++.|+++++++|.+.
T Consensus       231 ~~~~~~SA~~~~gi~~l~~~i~~~  254 (262)
T 1yrb_A          231 VRVLYLSAKTREGFEDLETLAYEH  254 (262)
T ss_dssp             CCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccceEEEecCcccHHHHHHHHHHH
Confidence            479999999999999999998764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.44  E-value=3.6e-12  Score=109.87  Aligned_cols=98  Identities=14%  Similarity=0.156  Sum_probs=66.4

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCc--------ccc----------cccccceeeeEEEEEEEc-----CeEEEEEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE--------FNL----------ESKSTIGVEFATRSIQVD-----QKTIKAQI   64 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~--------~~~----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~   64 (223)
                      -+...+|+|+|+.++|||||..+|+...        +..          .....+++......+...     +..+.+++
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            3567889999999999999999987421        100          011111222122222222     23578999


Q ss_pred             EeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625         65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW  105 (223)
Q Consensus        65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  105 (223)
                      +|||||.+|..-....++-+|++++|+|....-..+.-..|
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~  130 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW  130 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH
Confidence            99999999999999999999999999999887766555533

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.44  E-value=5.3e-13  Score=106.77  Aligned_cols=85  Identities=16%  Similarity=0.176  Sum_probs=62.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcc-cccccccceeeeEEEEEEEcCe---------------EEEEEEEeCCCCccc-
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQK---------------TIKAQIWDTAGQERY-   73 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~-   73 (223)
                      ..+++++|++|||||||+|+|++... .....|+.+.++....+.+.+.               ...+.+||+||.... 
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            47899999999999999999999776 4455565555665666666542               136899999995432 


Q ss_pred             ------cccchhhhcCCcEEEEEEeCCC
Q psy15625         74 ------RAITSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        74 ------~~~~~~~~~~~~~~i~v~d~~~   95 (223)
                            .......++.+|++++|+|+++
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  2233445789999999999875

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.42  E-value=2.6e-13  Score=116.25  Aligned_cols=84  Identities=13%  Similarity=0.065  Sum_probs=55.3

Q ss_pred             cccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHH----cC-CeEEEeecC
Q psy15625        133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAER----NN-LSFIETSAL  207 (223)
Q Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~  207 (223)
                      ..+|.++++.|++.+.+..+....+..+.   ..+.|+++|+||+|+.+...... .... ...    .+ .+++.+||+
T Consensus       186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~-~il~-~~~~~l~lg~~~VV~iSA~  260 (772)
T 3zvr_A          186 KENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLDLMDEGTDAR-DVLE-NKLLPLRRGYIGVVNRSQK  260 (772)
T ss_dssp             STTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECTTSSCTTCCSH-HHHT-TCSSCCSSCEEECCCCCCE
T ss_pred             cCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCcccCCcchhhH-HHHH-HHhhhhhccCCceEEeccc
Confidence            35777888888887666555433444443   34789999999999875433222 1111 001    12 357889999


Q ss_pred             CCCCHHHHHHHHHh
Q psy15625        208 DSTNVETAFQNILT  221 (223)
Q Consensus       208 ~~~~i~~~~~~i~~  221 (223)
                      ++.|++++++.+.+
T Consensus       261 ~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          261 DIDGKKDITAALAA  274 (772)
T ss_dssp             ESSSSEEHHHHHHH
T ss_pred             ccccchhHHHHHHH
Confidence            99999999988764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.42  E-value=1.5e-13  Score=108.47  Aligned_cols=55  Identities=15%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHH----------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAER----------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|.++++||+|+......+....+.+...          ++.+++.+||+++.|++++++.|.+.
T Consensus       194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            45577889999643111111122233221          13578999999999999999998753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.35  E-value=4.5e-12  Score=98.61  Aligned_cols=110  Identities=11%  Similarity=0.055  Sum_probs=80.8

Q ss_pred             CeEEEEEEEe-CCC-----CccccccchhhhcCCcEEEEEEeCCCcc-cHHHHHHHHHHHHHhcCCceeEEEeCCCcccc
Q psy15625         57 QKTIKAQIWD-TAG-----QERYRAITSAYYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGPPSLLR  129 (223)
Q Consensus        57 ~~~~~~~~~D-~~G-----~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (223)
                      +..+.+..+| +.|     ++.+..+.+.+++++|++++|+|.+++. ++..+..|+..+                    
T Consensus        47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~--------------------  106 (302)
T 2yv5_A           47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVY--------------------  106 (302)
T ss_dssp             TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHH--------------------
T ss_pred             ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHH--------------------
Confidence            3445555555 323     5667777888999999999999999876 777777554433                    


Q ss_pred             ccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCC-hHHHHHHHHHcCCeEEEeecCC
Q psy15625        130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP-ADEAKTFAERNNLSFIETSALD  208 (223)
Q Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~  208 (223)
                                                     ..   .++|+++|+||+|+.+.+.+. .++...+....+.+++++||++
T Consensus       107 -------------------------------~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~  152 (302)
T 2yv5_A          107 -------------------------------EY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKT  152 (302)
T ss_dssp             -------------------------------HH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTT
T ss_pred             -------------------------------Hh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCC
Confidence                                           22   378999999999996532212 3445566667789999999999


Q ss_pred             CCCHHHHHHHHH
Q psy15625        209 STNVETAFQNIL  220 (223)
Q Consensus       209 ~~~i~~~~~~i~  220 (223)
                      +.|++++++.+.
T Consensus       153 g~gi~~L~~~l~  164 (302)
T 2yv5_A          153 GEGIDELVDYLE  164 (302)
T ss_dssp             CTTHHHHHHHTT
T ss_pred             CCCHHHHHhhcc
Confidence            999999998764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.12  E-value=1.6e-10  Score=83.60  Aligned_cols=105  Identities=10%  Similarity=-0.007  Sum_probs=66.2

Q ss_pred             CCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccc
Q psy15625         68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKH  147 (223)
Q Consensus        68 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  147 (223)
                      +|+...+++|+.|++++|++|+|+|.++.+..+ ....+.++                                      
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL--------------------------------------  150 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHI--------------------------------------  150 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHH--------------------------------------
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHH--------------------------------------
Confidence            378889999999999999999999999875443 22111111                                      


Q ss_pred             cchhhhHHHHHHhhhcc-CCCceEEEeeccc-chhhccCCChHHHHHHHH----HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        148 LTYENVERWLRELRDHA-DQNIVIMLVGNKS-DLRHLRAVPADEAKTFAE----RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       148 ~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                               ...+.... ..+.|++|++||. |+++  ..+..++.+...    ...+.+..|||++|+|+.+.++||.+
T Consensus       151 ---------~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~  219 (227)
T 3l82_B          151 ---------MAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILE  219 (227)
T ss_dssp             ---------HHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTT
T ss_pred             ---------HHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHH
Confidence                     11122211 2478999999995 6753  345554433322    13456999999999999999999976


Q ss_pred             h
Q psy15625        222 A  222 (223)
Q Consensus       222 ~  222 (223)
                      .
T Consensus       220 ~  220 (227)
T 3l82_B          220 E  220 (227)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.10  E-value=1.3e-10  Score=92.85  Aligned_cols=149  Identities=13%  Similarity=0.118  Sum_probs=81.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC------cccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN------EFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      .+|+++|.+|+|||||+|+|++.      .......+  +++.......++..   +.++||||...........     
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l-----  232 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFV-----  232 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGS-----
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHH-----
Confidence            47999999999999999999986      22222222  23333444444432   6899999964322111100     


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                               ..+....+                           ...+..+++++++++........+..    +.....
T Consensus       233 ---------~~~~l~~~---------------------------~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~  272 (369)
T 3ec1_A          233 ---------DARDLKII---------------------------TPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKG  272 (369)
T ss_dssp             ---------CTTTHHHH---------------------------SCSSCCCCEEEEECTTEEEEETTTEE----EEEEES
T ss_pred             ---------hHHHHHHH---------------------------hcccccCceEEEEcCCceEEECCEEE----EEEccC
Confidence                     00011111                           01145677777777643322222111    222333


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCC
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTN  211 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  211 (223)
                      .+.|+++++||+|...... .......+.+..|..+.+.++....+
T Consensus       273 ~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~~~~~~  317 (369)
T 3ec1_A          273 GRRSFVCYMANELTVHRTK-LEKADSLYANQLGELLSPPSKRYAAE  317 (369)
T ss_dssp             SSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred             CCceEEEEecCCccccccc-HHHHHHHHHHhcCCccCCCCchhhhh
Confidence            5789999999999865322 23334445556666666655554433

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.06  E-value=5.3e-11  Score=94.97  Aligned_cols=58  Identities=22%  Similarity=0.381  Sum_probs=36.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc-----cccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL-----ESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      .+|+++|.+|+|||||+|+|.+.....     ......+++.......++..   +.++||||...
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~  223 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIIN  223 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCC
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCc
Confidence            579999999999999999999864211     11122233333334434333   78999999543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.93  E-value=7.2e-10  Score=91.44  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~   32 (223)
                      .+...|+++|.+||||||++++|.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999999999998

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.93  E-value=1.5e-09  Score=82.44  Aligned_cols=106  Identities=9%  Similarity=-0.013  Sum_probs=70.6

Q ss_pred             CCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeeccc
Q psy15625         67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAK  146 (223)
Q Consensus        67 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  146 (223)
                      .+|+...+++|+.|++++|++|+|+|.++.+..+ ....+.++                                     
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL-------------------------------------  235 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHI-------------------------------------  235 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHH-------------------------------------
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHH-------------------------------------
Confidence            3578889999999999999999999999877644 22111111                                     


Q ss_pred             ccchhhhHHHHHHhhhcc-CCCceEEEeecc-cchhhccCCChHHHHHHHH----HcCCeEEEeecCCCCCHHHHHHHHH
Q psy15625        147 HLTYENVERWLRELRDHA-DQNIVIMLVGNK-SDLRHLRAVPADEAKTFAE----RNNLSFIETSALDSTNVETAFQNIL  220 (223)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~  220 (223)
                                ...+.... ..+.|++|++|| .|+++  ..+..++.+...    ...+.+..|||.+|+|+.+.++||.
T Consensus       236 ----------~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~  303 (312)
T 3l2o_B          236 ----------MAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWIL  303 (312)
T ss_dssp             ----------HHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred             ----------HHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHH
Confidence                      11121111 247899999997 58754  344444433321    1345699999999999999999998


Q ss_pred             hh
Q psy15625        221 TA  222 (223)
Q Consensus       221 ~~  222 (223)
                      +.
T Consensus       304 ~~  305 (312)
T 3l2o_B          304 EE  305 (312)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.92  E-value=3.7e-09  Score=85.25  Aligned_cols=60  Identities=25%  Similarity=0.511  Sum_probs=35.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccc--cceeeeEEEEEEEc--CeEEEEEEEeCCCCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS--TIGVEFATRSIQVD--QKTIKAQIWDTAGQE   71 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~D~~G~~   71 (223)
                      ++++|+|++|+|||||++.|.+..+......  ..+.......+...  +-...+.++|++|..
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g  106 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG  106 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence            5799999999999999999998754321111  11111111122122  223368899999853

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.86  E-value=1e-08  Score=78.30  Aligned_cols=27  Identities=30%  Similarity=0.699  Sum_probs=23.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFN   37 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~   37 (223)
                      .++++++|++|+|||||++.|.+...+
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            478999999999999999999986543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.85  E-value=1.3e-07  Score=76.28  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=22.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ....++|+|++|||||||+|.+.+-.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            34589999999999999999999854

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.77  E-value=1.6e-08  Score=80.71  Aligned_cols=54  Identities=30%  Similarity=0.340  Sum_probs=41.9

Q ss_pred             CceEEEeecccchhhccCCChHHHHHH----HHHcCC---eEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTF----AERNNL---SFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ++|+++|+||+|+.+. ....++..++    +.+.|.   +++.+||+++.|++++++.+.+
T Consensus        96 ~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~  156 (368)
T 3h2y_A           96 NNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEY  156 (368)
T ss_dssp             SSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence            6899999999999652 2333444443    556677   7999999999999999999864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.72  E-value=1.2e-08  Score=78.50  Aligned_cols=59  Identities=22%  Similarity=0.418  Sum_probs=36.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE   71 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~   71 (223)
                      +..++|+++|.||||||||+|+|.+....... ...+++.....+..+.   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            35689999999999999999999987643332 2222332222232322   57899999954

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.63  E-value=1.1e-08  Score=77.78  Aligned_cols=57  Identities=18%  Similarity=0.327  Sum_probs=35.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      ++++++|.+|+|||||+|+|.+....... +..+.+.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            69999999999999999999987653322 2233332222222222   578999999543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.63  E-value=6.4e-08  Score=77.26  Aligned_cols=54  Identities=28%  Similarity=0.287  Sum_probs=41.1

Q ss_pred             CceEEEeecccchhhccCCChHHHHHH----HHHcCC---eEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTF----AERNNL---SFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ++|+++|+||+|+.+. ....+..+++    +.+.|.   +++.+||+++.|++++++.+.+
T Consensus        98 ~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~  158 (369)
T 3ec1_A           98 DNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINR  158 (369)
T ss_dssp             TSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             CCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999752 2333444444    455666   6899999999999999998864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.46  E-value=2.4e-07  Score=71.16  Aligned_cols=81  Identities=12%  Similarity=0.092  Sum_probs=58.9

Q ss_pred             cccccceeEEEeecccccchhh--hHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCC
Q psy15625        131 YYRGAVGALLVYDIAKHLTYEN--VERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALD  208 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  208 (223)
                      ....+|+++.++|++++.+...  +..++        .++|.++|+||+|+.+..  ..+....+..+.+.+++.+||++
T Consensus        20 ~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~~~~~~~g~~~i~iSA~~   89 (282)
T 1puj_A           20 KLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINSVN   89 (282)
T ss_dssp             HGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCTTT
T ss_pred             HHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHHHHHHhcCCcEEEEECCC
Confidence            3467999999999999877653  33322        378999999999996421  11222333344578999999999


Q ss_pred             CCCHHHHHHHHHh
Q psy15625        209 STNVETAFQNILT  221 (223)
Q Consensus       209 ~~~i~~~~~~i~~  221 (223)
                      +.|++++++.+.+
T Consensus        90 ~~gi~~L~~~i~~  102 (282)
T 1puj_A           90 GQGLNQIVPASKE  102 (282)
T ss_dssp             CTTGGGHHHHHHH
T ss_pred             cccHHHHHHHHHH
Confidence            9999999887754

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.40  E-value=2.1e-07  Score=78.20  Aligned_cols=65  Identities=15%  Similarity=0.113  Sum_probs=40.3

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc-cceeeeEEEEE--EE-cCeEEEEEEEeCCCCcc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIGVEFATRSI--QV-DQKTIKAQIWDTAGQER   72 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~~~D~~G~~~   72 (223)
                      ..+..+|+|+|.||+|||||+|+|++......... +.+.+.....+  .. ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            34578999999999999999999998764211111 11111111111  11 12334789999999654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.38  E-value=3.7e-06  Score=68.19  Aligned_cols=68  Identities=10%  Similarity=0.008  Sum_probs=42.7

Q ss_pred             ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625        134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE  213 (223)
Q Consensus       134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  213 (223)
                      ..+.+++|+|+..+......   ...+...   -.+..+|+||.|...    ..-.........+.++.+++.  |++++
T Consensus       212 ~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~----~gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          212 HPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSA----KGGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             CCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCS----SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             cCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCcc----cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence            46889999999886443322   2223221   234568899999753    223445566677888888775  66554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.17  E-value=2.2e-06  Score=69.62  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+++|++|+||||++++|...
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~  122 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARY  122 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.15  E-value=1.4e-05  Score=64.80  Aligned_cols=67  Identities=9%  Similarity=0.009  Sum_probs=42.6

Q ss_pred             ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCH
Q psy15625        134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNV  212 (223)
Q Consensus       134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  212 (223)
                      ..+.+++|+|+..+.....+   ...+...   -.+..+++||.|...    ..-.........+.|+.+++.  |+++
T Consensus       211 ~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          211 KPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             CCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             CCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence            35789999999886443332   2233221   135678999999753    233455666677899888876  6554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.15  E-value=2e-06  Score=65.36  Aligned_cols=81  Identities=10%  Similarity=0.025  Sum_probs=57.8

Q ss_pred             ccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCC
Q psy15625        130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDS  209 (223)
Q Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  209 (223)
                      .....+|.++.|+|++.+.+.....  +   . ..  ++|.++|+||+|+.+...  .+....+..+.|.++ .+||+++
T Consensus        17 ~~l~~~D~vl~VvDar~P~~~~~~~--l---~-ll--~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~   85 (262)
T 3cnl_A           17 DLLRLVNTVVEVRDARAPFATSAYG--V---D-FS--RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGE   85 (262)
T ss_dssp             HHHTTCSEEEEEEETTSTTTTSCTT--S---C-CT--TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTS
T ss_pred             HHHhhCCEEEEEeeCCCCCcCcChH--H---H-hc--CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCC
Confidence            3446899999999999886665311  1   1 11  789999999999965211  122233444567888 9999999


Q ss_pred             CCHHHHHHHHHh
Q psy15625        210 TNVETAFQNILT  221 (223)
Q Consensus       210 ~~i~~~~~~i~~  221 (223)
                      .|++++++.+.+
T Consensus        86 ~gi~~L~~~l~~   97 (262)
T 3cnl_A           86 PRKVLLKKLSFD   97 (262)
T ss_dssp             CHHHHHHHHCCC
T ss_pred             cCHHHHHHHHHH
Confidence            999999988754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.13  E-value=1.4e-05  Score=61.79  Aligned_cols=86  Identities=9%  Similarity=0.006  Sum_probs=51.6

Q ss_pred             CceeEEEeCCCcccc--c------------cccccceeEEEeecccccchhhhHHHHHHhhhccCCCce-EEEeecccch
Q psy15625        115 QNIVIMLVGPPSLLR--R------------YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV-IMLVGNKSDL  179 (223)
Q Consensus       115 ~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl  179 (223)
                      ...+++++++++...  .            ....+|.++++.|+..+.   +.......+..    ..| ..+|+||+|.
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~  251 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDG  251 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCC
Confidence            355667777665544  1            124688999999987542   22222222222    244 6788999997


Q ss_pred             hhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625        180 RHLRAVPADEAKTFAERNNLSFIETSALDSTNVE  213 (223)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  213 (223)
                      ..    .......+....+.++.+++  .|++++
T Consensus       252 ~~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~  279 (297)
T 1j8m_F          252 TA----KGGGALSAVAATGATIKFIG--TGEKID  279 (297)
T ss_dssp             CT----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             Cc----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence            43    23345566777788887776  455554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.93  E-value=0.00013  Score=57.16  Aligned_cols=68  Identities=9%  Similarity=-0.000  Sum_probs=40.5

Q ss_pred             ccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625        134 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE  213 (223)
Q Consensus       134 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  213 (223)
                      ..|..++++|+..+.   +.......+....   ..-.+++||.|...    ..-.........+.++.+++  +|++++
T Consensus       241 ~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----~~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          241 KPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----RGGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             CCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             cCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            357788888977763   2223333333211   12367889999632    23345567777888888877  555553

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.93  E-value=2.6e-06  Score=65.96  Aligned_cols=88  Identities=15%  Similarity=0.115  Sum_probs=59.2

Q ss_pred             ccccccccceeEEEeecccccchhh-hHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHcCCeEEEe
Q psy15625        128 LRRYYRGAVGALLVYDIAKHLTYEN-VERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERNNLSFIET  204 (223)
Q Consensus       128 ~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~  204 (223)
                      .+....++|.+++|.|+..+..... +..++...+.   .++|.++|+||+|+.+....  ..++........|.+++.+
T Consensus        80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~  156 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT  156 (307)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred             hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEE
Confidence            4446689999999999997754433 3344333322   47888999999999752210  0123334444568899999


Q ss_pred             ecCCCCCHHHHHHH
Q psy15625        205 SALDSTNVETAFQN  218 (223)
Q Consensus       205 Sa~~~~~i~~~~~~  218 (223)
                      ||+++.|++++++.
T Consensus       157 sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          157 SSKDQDSLADIIPH  170 (307)
T ss_dssp             CHHHHTTCTTTGGG
T ss_pred             ecCCCCCHHHHHhh
Confidence            99999998877654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.89  E-value=1.8e-05  Score=67.16  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFN   37 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~   37 (223)
                      .|+|+|+.|||||||++.+.+-..+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            4999999999999999999987543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.81  E-value=3.5e-05  Score=62.69  Aligned_cols=27  Identities=26%  Similarity=0.215  Sum_probs=23.2

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..+..-|.|+|++++|||||+|+|.+.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            345677999999999999999999864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.66  E-value=0.0001  Score=58.23  Aligned_cols=85  Identities=12%  Similarity=0.081  Sum_probs=52.4

Q ss_pred             cccccceeEEEeeccccc-chhhhHHHHHHhhhccCCCceEEEeecccchhhccCC-ChHHHHHHHHHcCCeEEEeecCC
Q psy15625        131 YYRGAVGALLVYDIAKHL-TYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV-PADEAKTFAERNNLSFIETSALD  208 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~  208 (223)
                      ...++|.++++.. ..+. +...+..++.....   .++|.++|+||+|+.+.... ..++........|.+++.+|+++
T Consensus       127 i~anvD~v~iv~a-~~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSA-ILPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEE-STTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEe-CCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            4578999997754 4442 22233333332222   26788999999999653210 01112223335688999999999


Q ss_pred             CCCHHHHHHHH
Q psy15625        209 STNVETAFQNI  219 (223)
Q Consensus       209 ~~~i~~~~~~i  219 (223)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999987653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.65  E-value=2.9e-05  Score=55.36  Aligned_cols=23  Identities=30%  Similarity=0.733  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +++++|++|+|||||++.+.+..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.62  E-value=2.3e-06  Score=70.49  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcc--ccccc--------h
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER--YRAIT--------S   78 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~~~~--------~   78 (223)
                      ....+|+++|.+|+||||+.++|....... ...+.............+......+||..|...  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999997653211 111111000000000111112346788888622  22222        4


Q ss_pred             hhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHh
Q psy15625         79 AYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  112 (223)
Q Consensus        79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  112 (223)
                      .++....+.++|+|.++. +......|.+.+.+.
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            456567787889999887 455556666655543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.56  E-value=2.5e-05  Score=60.52  Aligned_cols=25  Identities=40%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -.++++|++|||||||+|.|.+...
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CEEEEECCCCCCHHHHHHHhccccc
Confidence            4789999999999999999987543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.53  E-value=4.8e-05  Score=54.24  Aligned_cols=22  Identities=27%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.53  E-value=5e-05  Score=54.47  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.|+++|++|||||||++.|.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346999999999999999999875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.50  E-value=7.2e-05  Score=59.10  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++|+|++|||||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999998654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.49  E-value=5.8e-05  Score=54.69  Aligned_cols=23  Identities=48%  Similarity=0.660  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.++|+|++|||||||++.+.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999874

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.43  E-value=0.00027  Score=54.71  Aligned_cols=24  Identities=58%  Similarity=0.840  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -.++++|++|||||||+|.|. ...
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            358999999999999999998 543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.43  E-value=7.6e-05  Score=54.10  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -++++|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.38  E-value=0.0001  Score=53.24  Aligned_cols=24  Identities=38%  Similarity=0.573  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .--|+|+|++|||||||+++|.+.
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECcCCCCHHHHHHHHHhh
Confidence            346899999999999999999864

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.38  E-value=0.0042  Score=48.38  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +.-.|+++|++|+||||++..|....
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34569999999999999999987643

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.37  E-value=9.6e-05  Score=53.87  Aligned_cols=24  Identities=38%  Similarity=0.412  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.++|+|++|||||||++.+.+-.
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999998753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.37  E-value=0.00011  Score=53.58  Aligned_cols=27  Identities=30%  Similarity=0.245  Sum_probs=23.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ++...|+|+|++|||||||++.|.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            446789999999999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.33  E-value=0.00011  Score=54.06  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|++|||||||++.|.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998743

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.33  E-value=0.00012  Score=54.03  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      --++|+|++|||||||++.+.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            468999999999999999998754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.32  E-value=0.00014  Score=53.12  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=22.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +.--|+|+|++|||||||++.|.+..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34468999999999999999998764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.31  E-value=0.00011  Score=51.95  Aligned_cols=21  Identities=48%  Similarity=0.613  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~   32 (223)
                      --++++|++|||||||++.+.
T Consensus        10 ei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            358999999999999999854

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.29  E-value=0.00015  Score=52.82  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +...|+|+|+.|||||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999999874

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.27  E-value=0.00015  Score=51.02  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .|+++|++||||||+.+.|.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.25  E-value=0.00017  Score=50.27  Aligned_cols=24  Identities=33%  Similarity=0.443  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.++++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.23  E-value=0.00016  Score=53.94  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            58999999999999999998754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.22  E-value=0.00018  Score=51.52  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      .++++|++||||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.22  E-value=0.00018  Score=52.14  Aligned_cols=25  Identities=36%  Similarity=0.511  Sum_probs=21.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ...|+|+|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3479999999999999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.20  E-value=0.00017  Score=51.80  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +++++|++|+|||||++.+.+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58999999999999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.20  E-value=0.0002  Score=51.83  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.|+|+|++||||||+++.|.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            456999999999999999999764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.19  E-value=0.0002  Score=51.99  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-|+|+|++||||||+.++|....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999997643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.19  E-value=0.00027  Score=50.91  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=22.9

Q ss_pred             CCCCccc-cceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          1 MGTREDE-YDYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         1 ~~~~~~~-~~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+.+... ++....|+++|.+||||||+.+.|...
T Consensus         1 ~~~~~~~~~~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A            1 MGSDKIHHHHHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             ---------CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcccccccccceEEEEECCCCCCHHHHHHHHHHh
Confidence            4444433 445789999999999999999999764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.19  E-value=0.00021  Score=51.16  Aligned_cols=21  Identities=43%  Similarity=0.724  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|+|++|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999865

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.19  E-value=0.00023  Score=49.97  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .|+|+|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.18  E-value=0.00018  Score=53.15  Aligned_cols=23  Identities=43%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.18  E-value=0.00027  Score=49.84  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.|+++|++||||||+.+.|.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            346999999999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.16  E-value=0.00022  Score=53.26  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.15  E-value=0.00025  Score=53.11  Aligned_cols=22  Identities=32%  Similarity=0.715  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~   32 (223)
                      .-.|+|+|++|||||||++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999998

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.15  E-value=0.00029  Score=49.78  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..|++.|+|||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.14  E-value=0.00024  Score=49.89  Aligned_cols=19  Identities=26%  Similarity=0.503  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q psy15625         13 KVVLIGDSGVGKSNLLSRF   31 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l   31 (223)
                      .|+|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.13  E-value=0.00024  Score=52.13  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.13  E-value=0.00025  Score=52.85  Aligned_cols=23  Identities=39%  Similarity=0.593  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.13  E-value=0.00041  Score=53.94  Aligned_cols=28  Identities=21%  Similarity=0.159  Sum_probs=23.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ......|+|+|++|||||||++.|.+-.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            4456789999999999999999998753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.12  E-value=0.00026  Score=54.71  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.++|+|++|+|||||++.|.+-.
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhc
Confidence            479999999999999999998743

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.12  E-value=0.00024  Score=54.22  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57999999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.12  E-value=0.00024  Score=53.79  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.11  E-value=0.00033  Score=50.86  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.11  E-value=0.00029  Score=51.03  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999987

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.11  E-value=0.00025  Score=51.82  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999886

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.10  E-value=0.00028  Score=52.80  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.10  E-value=0.00028  Score=52.98  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.09  E-value=0.00026  Score=53.43  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.09  E-value=0.00031  Score=52.13  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.09  E-value=0.00032  Score=53.11  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .=.++|+|++|||||||++.+.+.
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHHh
Confidence            346899999999999999999874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.09  E-value=0.00032  Score=51.61  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..|+++|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998763

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.08  E-value=0.00029  Score=53.44  Aligned_cols=23  Identities=43%  Similarity=0.577  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            58999999999999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.07  E-value=0.00035  Score=50.52  Aligned_cols=23  Identities=35%  Similarity=0.616  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.|+++|++||||||+.+.|...
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.07  E-value=0.00031  Score=50.82  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..|+|+|.+||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999999754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.06  E-value=0.00033  Score=53.09  Aligned_cols=23  Identities=48%  Similarity=0.603  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            58999999999999999998754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.06  E-value=0.0051  Score=49.94  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +...|+++|.+|+||||+...|...
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~  123 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKF  123 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3567889999999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.05  E-value=0.0003  Score=52.57  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.05  E-value=0.00035  Score=49.46  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            36899999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.05  E-value=0.00046  Score=49.10  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999974

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.05  E-value=0.00035  Score=52.51  Aligned_cols=23  Identities=39%  Similarity=0.631  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999998754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.05  E-value=0.00034  Score=52.95  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.05  E-value=0.00032  Score=49.53  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+|+|++||||||+.+.|...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5999999999999999999653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.04  E-value=0.00035  Score=52.69  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.04  E-value=0.00035  Score=54.06  Aligned_cols=25  Identities=36%  Similarity=0.359  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFN   37 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~   37 (223)
                      .++++|++|||||||+|.+.+...+
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             eEEEECCCCCcHHHHHHHhcccccc
Confidence            5799999999999999999876543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.03  E-value=0.00044  Score=50.03  Aligned_cols=27  Identities=26%  Similarity=0.222  Sum_probs=22.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ++...|+++|++||||||+.+.|.+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999987653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.03  E-value=0.00038  Score=52.35  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999885

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.03  E-value=0.00038  Score=50.86  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999964

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.03  E-value=0.00046  Score=50.10  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+|+|++|+||||+.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999999874

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.03  E-value=0.00032  Score=49.75  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.++++|++|+|||||++.+.+..
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568999999999999999998754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.03  E-value=0.00039  Score=52.83  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999885

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.03  E-value=0.00036  Score=53.33  Aligned_cols=23  Identities=39%  Similarity=0.574  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999998754

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.03  E-value=0.0027  Score=45.79  Aligned_cols=82  Identities=4%  Similarity=-0.117  Sum_probs=48.8

Q ss_pred             ceeEEEeCCCcccc----ccccccceeEEEeecccccchhhhHHHHHHhhhcc--CCCceEEEeecccchhhccCCChHH
Q psy15625        116 NIVIMLVGPPSLLR----RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA--DQNIVIMLVGNKSDLRHLRAVPADE  189 (223)
Q Consensus       116 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~  189 (223)
                      ..++++++.+....    .....+|.++++..++...  ......+..+....  ..+.++.+|+|++|....   ...+
T Consensus        75 ~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~~  149 (206)
T 4dzz_A           75 DYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLNV  149 (206)
T ss_dssp             TSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHHH
Confidence            45666666654432    3456789999998877655  44455555554432  235678999999995431   2234


Q ss_pred             HHHHHHHcCCeEE
Q psy15625        190 AKTFAERNNLSFI  202 (223)
Q Consensus       190 ~~~~~~~~~~~~~  202 (223)
                      ..+...+.+.+++
T Consensus       150 ~~~~l~~~~~~vl  162 (206)
T 4dzz_A          150 LKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHTCCBC
T ss_pred             HHHHHHHcCCcee
Confidence            4455555554433

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.02  E-value=0.00037  Score=53.08  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.02  E-value=0.00022  Score=52.88  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh-hC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFT-RN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~-~~   34 (223)
                      .++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998 54

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.01  E-value=0.00041  Score=50.72  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999964

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.01  E-value=0.00041  Score=49.57  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .|+|.|.+||||||+.+.|...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.01  E-value=0.00039  Score=49.08  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .|+++|++||||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.00  E-value=0.00044  Score=49.88  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .|+|.|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999999763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.99  E-value=0.00022  Score=50.42  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|++|+|||||++.|.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.99  E-value=0.00041  Score=52.23  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.99  E-value=0.00047  Score=51.55  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +...|+|+|+.|||||||++.|.+.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998763

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.99  E-value=0.00048  Score=49.80  Aligned_cols=24  Identities=25%  Similarity=0.530  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ....|+|+|.+||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999875

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.98  E-value=0.0005  Score=51.39  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +..+|+|+|++||||||+.++|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999975

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.98  E-value=0.00048  Score=49.14  Aligned_cols=24  Identities=17%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..+|+++|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.97  E-value=0.00062  Score=53.03  Aligned_cols=27  Identities=19%  Similarity=0.177  Sum_probs=22.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ....+-|+|+|++|||||||++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999998754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.97  E-value=0.00051  Score=49.53  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=22.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .....|+|+|.+||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999999875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.97  E-value=0.00049  Score=49.07  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.97  E-value=0.00043  Score=52.52  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999998754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.96  E-value=0.00052  Score=49.06  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999965

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.96  E-value=0.00046  Score=52.27  Aligned_cols=23  Identities=35%  Similarity=0.615  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.94  E-value=0.00044  Score=50.87  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      --++|+|++|+|||||++.+.+..
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            358999999999999999998743

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.93  E-value=0.0005  Score=48.89  Aligned_cols=24  Identities=33%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+++|++||||||+.+.|...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.92  E-value=0.00052  Score=50.38  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.92  E-value=0.00061  Score=48.70  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.91  E-value=0.00039  Score=47.90  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|++|+|||||++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.90  E-value=0.00035  Score=54.06  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|+.|||||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            68999999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.90  E-value=0.00049  Score=54.67  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-+++|+|++|+|||||++.|.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.87  E-value=0.00059  Score=49.69  Aligned_cols=25  Identities=24%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ....|+|.|.+||||||+.+.|...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999999753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.86  E-value=0.00072  Score=49.05  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999763

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.86  E-value=0.00058  Score=48.39  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+++|.+|+||||+.+.|...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            356899999999999999998743

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.86  E-value=0.00063  Score=49.70  Aligned_cols=21  Identities=19%  Similarity=0.396  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999975

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.86  E-value=0.0007  Score=48.99  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ....|+++|++|+||||+++.|.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998763

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.85  E-value=0.00055  Score=54.09  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++++|+.|||||||++.+.+-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            478999999999999999988643

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.85  E-value=0.00074  Score=47.17  Aligned_cols=21  Identities=38%  Similarity=0.453  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.85  E-value=0.0009  Score=48.32  Aligned_cols=24  Identities=17%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+|+|.+||||||+.+.|...
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.84  E-value=0.0006  Score=52.39  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            58999999999999999998753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.84  E-value=0.00065  Score=53.74  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.84  E-value=0.00072  Score=49.23  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+|+|+|||||+|...+|...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998753

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.83  E-value=0.00084  Score=51.59  Aligned_cols=27  Identities=19%  Similarity=0.181  Sum_probs=22.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .....|+|+|++|||||||.+.|.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            446789999999999999999887643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.82  E-value=0.00064  Score=53.81  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            57999999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.82  E-value=0.0003  Score=50.61  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+|+|.+||||||+.+.|...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998753

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.82  E-value=0.00065  Score=51.76  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.81  E-value=0.00079  Score=50.55  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.81  E-value=0.00084  Score=52.04  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .....|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.81  E-value=0.00073  Score=50.03  Aligned_cols=26  Identities=31%  Similarity=0.597  Sum_probs=22.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+..-|+|.|+.||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567999999999999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.80  E-value=0.00068  Score=53.55  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.79  E-value=0.00081  Score=48.52  Aligned_cols=24  Identities=17%  Similarity=0.104  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999765

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.78  E-value=0.00071  Score=53.53  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999998754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.78  E-value=0.0011  Score=47.16  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +...|+++|.+||||||+.+.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.77  E-value=0.00073  Score=52.27  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.|+++|+.||||||+++.+.+..
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            4579999999999999999998654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.77  E-value=0.00074  Score=53.79  Aligned_cols=23  Identities=48%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999998754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.77  E-value=0.00074  Score=48.38  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999965

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.77  E-value=0.00075  Score=53.48  Aligned_cols=23  Identities=39%  Similarity=0.470  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999998754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.76  E-value=0.00092  Score=51.30  Aligned_cols=24  Identities=29%  Similarity=0.319  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ....|++.|++||||||+.++|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999999975

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.76  E-value=0.0009  Score=47.06  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..++++|.+|+|||||+.++...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.76  E-value=0.00079  Score=50.50  Aligned_cols=21  Identities=38%  Similarity=0.694  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.75  E-value=0.001  Score=48.28  Aligned_cols=24  Identities=21%  Similarity=0.052  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+|.|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.75  E-value=0.00086  Score=49.46  Aligned_cols=23  Identities=39%  Similarity=0.731  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...|+|.|.+||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.75  E-value=0.014  Score=47.29  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.|+++|+.|+||||++..|....
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568888999999999999997653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.74  E-value=0.00095  Score=47.67  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.74  E-value=0.0011  Score=47.17  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..|+|+|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.74  E-value=0.00087  Score=50.37  Aligned_cols=22  Identities=27%  Similarity=0.373  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~   32 (223)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999998

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.74  E-value=0.00083  Score=51.93  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +.-.++++|+.||||||+++.+.+..
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999998753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.73  E-value=0.00081  Score=53.51  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.73  E-value=0.00083  Score=53.41  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999998754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.72  E-value=0.00087  Score=53.39  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.++|+|++||||||+++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46999999999999999999874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.72  E-value=0.00095  Score=49.16  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999965

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.71  E-value=0.00079  Score=53.44  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.++|+|++|+|||||++.+.+..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            379999999999999999998753

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.70  E-value=0.0012  Score=48.31  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999975

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.69  E-value=0.00038  Score=50.67  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -|+|.|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4899999999999999998754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.68  E-value=0.00076  Score=52.85  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|++|+|||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.67  E-value=0.001  Score=48.75  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..+|+|+|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.67  E-value=0.0011  Score=46.52  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.67  E-value=0.0015  Score=47.96  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -|+|+|+|||||+|...+|...
T Consensus        31 iI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999998753

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.66  E-value=0.0013  Score=46.51  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+++|.+||||||+.+.|...
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.66  E-value=0.00068  Score=53.42  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            57899999999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.66  E-value=0.00084  Score=50.46  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .....|+++|++||||||+.+.|...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.64  E-value=0.0012  Score=46.11  Aligned_cols=26  Identities=35%  Similarity=0.402  Sum_probs=20.2

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ++..-.|+|+|.+||||||+.+.|..
T Consensus         4 ~~~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            4 HHHMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             ----CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccccceEEEECCCCCCHHHHHHHHHH
Confidence            34456899999999999999999865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.64  E-value=0.001  Score=48.82  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..|+|+|++||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.63  E-value=0.0012  Score=46.95  Aligned_cols=21  Identities=43%  Similarity=0.684  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999999865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.63  E-value=0.001  Score=53.76  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|++|||||||++.+.+..
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.60  E-value=0.0011  Score=53.16  Aligned_cols=22  Identities=55%  Similarity=0.795  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++++|+.|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999999874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.60  E-value=0.0012  Score=50.32  Aligned_cols=21  Identities=38%  Similarity=0.694  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.60  E-value=0.0014  Score=46.35  Aligned_cols=24  Identities=33%  Similarity=0.605  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.+++.|++|+|||+|++.+....
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999987653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.59  E-value=0.0017  Score=49.64  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ....|+|+|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999973

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.59  E-value=0.0012  Score=51.86  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            34899999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.58  E-value=0.0013  Score=49.56  Aligned_cols=22  Identities=14%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -|+|+|++|||||||.+.|...
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            4789999999999999999653

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.58  E-value=0.00088  Score=47.43  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=15.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.58  E-value=0.0013  Score=49.74  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..|+++|.+||||||+.+.|...
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.58  E-value=0.0013  Score=48.72  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..+.|+|.|++|+||||+.+.|..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.57  E-value=0.0011  Score=54.94  Aligned_cols=23  Identities=17%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|++||||||+++.+.+--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            49999999999999999998754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.55  E-value=0.0015  Score=48.28  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      .++...+.+|+|+|||||||+.++|..
T Consensus         4 ~~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            4 HHHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -----CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccccceeeECCCCCCHHHHHHHHHH
Confidence            345578999999999999999999865

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.55  E-value=0.0013  Score=48.24  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -++++|++|+|||||++.+....
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.54  E-value=0.00067  Score=53.60  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.54  E-value=0.0015  Score=48.40  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..+|+|+|.+||||||+.+.|...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.52  E-value=0.0014  Score=51.86  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=22.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +.-.++++|+.||||||+++.|.+..
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            34579999999999999999998753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.51  E-value=0.0013  Score=49.43  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      -+|+|+|++|+||||+.+.|.+
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999975

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.50  E-value=0.0015  Score=51.44  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -+++++|+.|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            379999999999999999999874

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.49  E-value=0.0015  Score=46.20  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.+|+|+.|+|||||++++...
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.48  E-value=0.0024  Score=47.26  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=22.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ....|+|.|++||||||+++.|....
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999997643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.47  E-value=0.0015  Score=53.68  Aligned_cols=25  Identities=28%  Similarity=0.652  Sum_probs=21.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.++|+|+.|||||||++.|.+..
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHh
Confidence            4579999999999999999998643

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0012  Score=53.98  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.++|+|+.|||||||++.|.+-.
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcc
Confidence            368999999999999999998764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.46  E-value=0.0018  Score=48.11  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ....|+|+|.+|+||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.43  E-value=0.0022  Score=46.70  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...|+++|.+|+||||+.+.|...
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.42  E-value=0.0018  Score=48.62  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.++++|++|+|||||++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45999999999999999999764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.41  E-value=0.0017  Score=49.95  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -++|+|++|+|||||+..+.+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999887543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.40  E-value=0.0014  Score=51.02  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      --++|+|..|||||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            457899999999999999999764

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.39  E-value=0.0097  Score=48.35  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=21.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHh
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~   32 (223)
                      ..+..-|.|+|..++|||+|+|.|+
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCchhHHHHHHH
Confidence            3456778899999999999999664

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.36  E-value=0.0016  Score=45.88  Aligned_cols=24  Identities=29%  Similarity=0.565  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.++|.|++|+|||++++.+....
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            467999999999999999987653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.35  E-value=0.0024  Score=46.03  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ..+++.|++|+|||+|++.+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999987643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.34  E-value=0.0022  Score=47.51  Aligned_cols=22  Identities=14%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.34  E-value=0.0024  Score=47.09  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.+++.|++|+|||+|++.+....
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999987643

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.33  E-value=0.0022  Score=46.71  Aligned_cols=21  Identities=19%  Similarity=0.153  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999987

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.32  E-value=0.0029  Score=46.11  Aligned_cols=31  Identities=19%  Similarity=0.386  Sum_probs=24.1

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ....++..+-|+++|..||||||+.+.|...
T Consensus         2 ~~~~~~~~~~iglTGgigsGKStv~~~l~~~   32 (210)
T 4i1u_A            2 AHHHHHHMYAIGLTGGIGSGKTTVADLFAAR   32 (210)
T ss_dssp             ----CCSCCEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcccccceeEEEEECCCCCCHHHHHHHHHHC
Confidence            3455667899999999999999999998763

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.31  E-value=0.0022  Score=51.15  Aligned_cols=23  Identities=17%  Similarity=0.163  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      .-.++++|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999999986

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.28  E-value=0.003  Score=52.81  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      =.++++|+.|+|||||++.+.+...
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3689999999999999999998543

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.27  E-value=0.0023  Score=52.55  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      -.++|+|+.|||||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            3589999999999999999986

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.26  E-value=0.0025  Score=43.81  Aligned_cols=20  Identities=40%  Similarity=0.649  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q psy15625         14 VVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~   33 (223)
                      .+|+|+.|+||||++.++..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.26  E-value=0.0025  Score=51.89  Aligned_cols=24  Identities=42%  Similarity=0.530  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -+++++|++|+|||||++.+.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            378999999999999999998864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.25  E-value=0.003  Score=48.59  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..|+++|.+||||||+.++|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.23  E-value=0.0022  Score=46.48  Aligned_cols=23  Identities=26%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.+++.|+||+||||++.++.+.
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999888653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.19  E-value=0.0032  Score=45.41  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.17  E-value=0.0026  Score=53.72  Aligned_cols=23  Identities=48%  Similarity=0.599  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.16  E-value=0.0026  Score=53.12  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++++|+.|+|||||++.+.+...
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            589999999999999999998543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.11  E-value=0.0031  Score=53.33  Aligned_cols=23  Identities=48%  Similarity=0.667  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.11  E-value=0.0039  Score=42.49  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ..|++.|++|+|||++.+.+....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999997654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.11  E-value=0.0017  Score=49.94  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=17.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999865

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.10  E-value=0.0033  Score=46.12  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++|.|++|+|||||++.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.07  E-value=0.0033  Score=48.16  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.+++.|++|+|||++++.+.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.06  E-value=0.0044  Score=47.58  Aligned_cols=26  Identities=23%  Similarity=0.170  Sum_probs=21.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .+.-+++.|+||+|||+|.+++....
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34568888999999999999997643

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.019  Score=42.14  Aligned_cols=26  Identities=12%  Similarity=0.115  Sum_probs=20.7

Q ss_pred             eeEEEEEE--cCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLI--GDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~--G~~~~GKStli~~l~~~~   35 (223)
                      |.-||+|+  |.++.||++|++++.+..
T Consensus        26 P~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           26 PQNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CCCceEEEecCcccccHHHHHHHHhccc
Confidence            33466666  999999999999998763

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.06  E-value=0.0037  Score=45.27  Aligned_cols=21  Identities=24%  Similarity=0.514  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      +++.|++|+|||++++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0041  Score=52.70  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++++|+.|+|||||++.+.+-..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            689999999999999999988543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.04  E-value=0.0035  Score=47.70  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..-.+++.|++|+|||+|++++...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999999764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.03  E-value=0.0036  Score=49.71  Aligned_cols=20  Identities=35%  Similarity=0.564  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q psy15625         14 VVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~   33 (223)
                      .+|+|+.|+|||||+++++.
T Consensus        26 ~~i~G~NGaGKTTll~ai~~   45 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAISF   45 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            55999999999999999873

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.03  E-value=0.0038  Score=46.78  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...+++.|++|+|||++.+.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999763

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.00  E-value=0.003  Score=53.53  Aligned_cols=23  Identities=35%  Similarity=0.612  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            78999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.98  E-value=0.0039  Score=48.07  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.|++.|++|+|||+|.+.+.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346999999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.98  E-value=0.0048  Score=52.33  Aligned_cols=25  Identities=20%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      =.++++|+.|+|||||++.+.+...
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCC
Confidence            3689999999999999999988543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.96  E-value=0.0043  Score=47.76  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.|+++|++|+||||++..|....
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999997643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.96  E-value=0.004  Score=48.43  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.+++.|++|+|||||++.+.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            358999999999999999997643

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.96  E-value=0.004  Score=47.42  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -++|+|++|+|||||+..+...
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999998863

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.95  E-value=0.0043  Score=47.97  Aligned_cols=25  Identities=20%  Similarity=0.458  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.|+++|++|+||||++..|.+..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHH
Confidence            4568999999999999999997643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.94  E-value=0.0042  Score=51.90  Aligned_cols=24  Identities=17%  Similarity=0.373  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++|+|+.|+|||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999988644

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.92  E-value=0.0057  Score=51.17  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++|+|+.|+|||||++.+.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999998654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.91  E-value=0.0042  Score=50.21  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..-|+++|.+||||||+.++|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999999753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.89  E-value=0.0053  Score=47.27  Aligned_cols=26  Identities=15%  Similarity=0.350  Sum_probs=21.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+...++|.|+||+|||++.+.+...
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34557999999999999999877654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.89  E-value=0.0064  Score=46.82  Aligned_cols=25  Identities=24%  Similarity=0.486  Sum_probs=21.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.+++.|++|+|||++.+.+....
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHH
Confidence            4579999999999999999987754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.88  E-value=0.0069  Score=45.82  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=22.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .....+++.|++|+|||++.+++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999999764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.85  E-value=0.0026  Score=53.71  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999999887653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.83  E-value=0.0065  Score=51.54  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++|+|+.|+|||||++.+.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            589999999999999999998654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.80  E-value=0.0049  Score=48.74  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.++|.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.79  E-value=0.0035  Score=47.26  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ....|+|.|.+||||||+.+.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999988754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.78  E-value=0.0034  Score=53.09  Aligned_cols=23  Identities=35%  Similarity=0.587  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999987753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.77  E-value=0.0062  Score=43.84  Aligned_cols=24  Identities=38%  Similarity=0.605  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ..|+|+|++|+|||||...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999997654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.76  E-value=0.007  Score=47.63  Aligned_cols=23  Identities=30%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..+|+++|++|+||||+.+.|.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999988765

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.73  E-value=0.0046  Score=48.58  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      +++.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998874

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.73  E-value=0.0058  Score=45.26  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -++++|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999998777543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.73  E-value=0.0064  Score=48.28  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|.|++|+|||||++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            69999999999999999998653

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.72  E-value=0.0055  Score=48.31  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      --+.|+|++|+|||||+..+....
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.70  E-value=0.0057  Score=51.83  Aligned_cols=24  Identities=25%  Similarity=0.530  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCccc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFN   37 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~   37 (223)
                      ++++|+.|+|||||++.+.+-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            799999999999999999986543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.69  E-value=0.0063  Score=46.71  Aligned_cols=24  Identities=29%  Similarity=0.624  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...+++.|+||+|||++.+.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.68  E-value=0.0075  Score=44.77  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..|++.|.+||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.66  E-value=0.0062  Score=47.71  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +++.|++|+||||+++.+.+.-
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.63  E-value=0.0058  Score=44.55  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..|+++|.+|+||||+.+.|..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998865

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.62  E-value=0.0014  Score=48.46  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      ++|+|+.|||||||++.+.+...
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            46889999999999999987544

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.62  E-value=0.005  Score=51.59  Aligned_cols=26  Identities=35%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +...|+|+|++|||||||.+.|.+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            34679999999999999999997653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.61  E-value=0.0091  Score=46.66  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-|+|+|++|||||||...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999764

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.59  E-value=0.013  Score=42.31  Aligned_cols=32  Identities=9%  Similarity=0.026  Sum_probs=27.0

Q ss_pred             CCCccccceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625          2 GTREDEYDYLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus         2 ~~~~~~~~~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +|.+....+..-|+|+|.++|||+++.+.+..
T Consensus         2 ~~~~~~~~~~~II~itGk~~SGKd~va~~l~~   33 (202)
T 3ch4_B            2 SMAPLGGAPRLVLLFSGKRKSGKDFVTEALQS   33 (202)
T ss_dssp             CCCTTBCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CccccccCCCEEEEEECCCCCChHHHHHHHHH
Confidence            45666677888999999999999999988865

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.58  E-value=0.007  Score=47.16  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.|++.|+||+|||+|.+++.+.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            356999999999999999999864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.57  E-value=0.0078  Score=43.95  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..-|+|.|.+||||||+++.|...
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~   29 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAER   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            346889999999999999998654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.56  E-value=0.0076  Score=46.88  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +...+++.|+||+|||+|.+++...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999999764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.56  E-value=0.0094  Score=46.33  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998753

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.0074  Score=48.85  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +--|++.|+||+|||+|.+++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999999764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.54  E-value=0.0082  Score=43.45  Aligned_cols=21  Identities=38%  Similarity=0.585  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      -.+|+|+.|+||||++.++..
T Consensus        25 ~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            357889999999999999854

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.54  E-value=0.0076  Score=47.18  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46999999999999999998763

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.50  E-value=0.0038  Score=42.45  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999888654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.50  E-value=0.0065  Score=44.84  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=17.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..-|.|.|.+||||||+++.|...
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356999999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.47  E-value=0.009  Score=53.20  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .++++|+.|+|||||++.+.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999996543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.46  E-value=0.0082  Score=47.01  Aligned_cols=21  Identities=24%  Similarity=0.583  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      +++.|++|+||||+++.+.+.
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.45  E-value=0.0037  Score=47.15  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+++.|++|+|||+|.+++.+.
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999999764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.43  E-value=0.0073  Score=47.82  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.++|.|++|+||||+++.+....
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999997643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.43  E-value=0.0097  Score=46.05  Aligned_cols=25  Identities=36%  Similarity=0.502  Sum_probs=21.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .-.+.+.|++|+|||+|++++....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999987643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.42  E-value=0.005  Score=56.93  Aligned_cols=22  Identities=36%  Similarity=0.641  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+++|++|||||||++.|.+-
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7999999999999999999764

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.0095  Score=48.29  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ++--|++.|+||+|||+|.+++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3456999999999999999999764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.39  E-value=0.0083  Score=50.24  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.++++|++|+|||||++.+.+..
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc
Confidence            368999999999999999987643

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.39  E-value=0.012  Score=43.24  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=21.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ...-|.+.|.+||||||+++.|...
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~   44 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEY   44 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.39  E-value=0.0053  Score=54.65  Aligned_cols=23  Identities=35%  Similarity=0.653  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|+.|+|||||++.|.+..
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998864

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.36  E-value=0.0088  Score=49.44  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -++++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.35  E-value=0.0088  Score=47.21  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.++|.|+||+|||++.+.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.34  E-value=0.0091  Score=48.62  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.+++.|++|+|||||++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.33  E-value=0.0099  Score=44.14  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-|+|.|.+||||||+++.|...
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~   50 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVET   50 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-45
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-45
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-43
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-42
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	7e-42
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	7e-42
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-41
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	7e-41
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-40
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-38
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-38
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-36
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	9e-36
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-34
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-33
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	7e-32
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-31
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	7e-31
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-29
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	6e-29
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-29
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-27
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-27
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-27
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-27
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-27
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	7e-27
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-26
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-26
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-25
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-25
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-25
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-24
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-24
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-23
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-23
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-22
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-22
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-22
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-20
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-20
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-19
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-19
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-19
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-18
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	9e-18
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-17
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-17
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-17
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-17
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-16
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-16
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-14
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-12
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-10
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-06
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	6e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	6e-04
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	0.001
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.001
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  147 bits (372), Expect = 1e-45
 Identities = 78/214 (36%), Positives = 110/214 (51%), Gaps = 51/214 (23%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
            YDYLFK++LIGDSGVGK+ +L RF+ + FN    STIG++F  R+I++D K IK QIWD
Sbjct: 2   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R IT                                                 
Sbjct: 62  TAGQERFRTIT------------------------------------------------- 72

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
               YYRGA+G +LVYDI    +++N+  W+R + +HA  ++  M++GNK D+   R V 
Sbjct: 73  --TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS 130

Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
            +  +  A    + F+ETSA  + NVE AF  + 
Sbjct: 131 KERGEKLALDYGIKFMETSAKANINVENAFFTLA 164

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 4e-45
 Identities = 151/214 (70%), Positives = 155/214 (72%), Gaps = 51/214 (23%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD KTIKAQIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQERYR IT                                                  
Sbjct: 61  AGQERYRRIT-------------------------------------------------- 70

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
              YYRGAVGALLVYDIAKHLTYENVERWL+ELRDHAD NIVIMLVGNKSDLRHLRAVP 
Sbjct: 71  -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT 129

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
           DEA+ FAE+NNLSFIETSALDSTNVE AF+NILT
Sbjct: 130 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  142 bits (358), Expect = 2e-43
 Identities = 60/117 (51%), Positives = 89/117 (76%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           EYDYLFK++LIG+SGVGKS LL RF+ + +  +  STIGV+F  +++++D KT+K QIWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVG 123
           TAGQER+R ITS+YYRG+ G ++VYD+    ++  V+ WL+E+  +A   ++ +LVG
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 118

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 2e-42
 Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 51/215 (23%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
           +YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  ++++++ + +K QIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQER+R+IT                                                 
Sbjct: 61  TAGQERFRSIT------------------------------------------------- 71

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
             + YYR A   +L YDI    ++  +  WLRE+  +A   ++ +LVGNK DL   R V 
Sbjct: 72  --QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS 129

Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
              A+ F+E  ++ ++ETSA +S NVE  F ++  
Sbjct: 130 QQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  137 bits (347), Expect = 7e-42
 Identities = 70/209 (33%), Positives = 106/209 (50%), Gaps = 52/209 (24%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           + K++LIGDSGVGKS LL RF  ++FN    +TIG++F  +++ ++ K +K QIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER+R IT+AYYRGA+G +LVYDI    T+ N+++W + + +HA+    ++LVG  S +  
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-- 119

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                                               R V AD+ 
Sbjct: 120 --------------------------------------------------ETRVVTADQG 129

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNI 219
           +  A+   + FIE+SA +  NV   F  +
Sbjct: 130 EALAKELGIPFIESSAKNDDNVNEIFFTL 158

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 7e-42
 Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 52/216 (24%)

Query: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTIKAQI 64
           D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + + VD   +K Q+
Sbjct: 1   DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER+R++T                                               
Sbjct: 61  WDTAGQERFRSVT----------------------------------------------- 73

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                 YYR A   LL+YD+    +++N++ WL E+ ++A  ++ +ML+GNK D  H R 
Sbjct: 74  ----HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV 129

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           V  ++ +  A+   L F+ETSA    NV+ AF  I 
Sbjct: 130 VKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 1e-41
 Identities = 88/215 (40%), Positives = 110/215 (51%), Gaps = 51/215 (23%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V  + IK QIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQER+RA+T                                                  
Sbjct: 61  AGQERFRAVT-------------------------------------------------- 70

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
            R YYRGA GAL+VYDI +  TY ++  WL + R+  + N VI+L+GNK+DL   R V  
Sbjct: 71  -RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTY 129

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           +EAK FAE N L F+E SA    NVE AF      
Sbjct: 130 EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 164

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 7e-41
 Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 60/224 (26%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV----------D 56
           +YDYL K++ +GDSGVGK+  L R+T N+FN +  +T+G++F  + +             
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 57  QKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN 116
              +  Q+WDTAGQER+R++T+A++R A+G LL++D+    ++ NV  W           
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW----------- 109

Query: 117 IVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNK 176
                                                    +   +   +N  I+L+GNK
Sbjct: 110 ---------------------------------------MSQLQANAYCENPDIVLIGNK 130

Query: 177 SDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +DL   R V   +A+  A++  + + ETSA    NVE A + +L
Sbjct: 131 ADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 174

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  134 bits (338), Expect = 1e-40
 Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 51/213 (23%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           +DY+FK+++IG+S VGK++ L R+  + F     ST+G++F  ++I  + K IK QIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQERYR IT                                                  
Sbjct: 62  AGQERYRTIT-------------------------------------------------- 71

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
              YYRGA+G +L+YDI    ++  V+ W  +++ ++  N  ++LVGNK D+   R V +
Sbjct: 72  -TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS 130

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           +  +  A+     F E SA D+ NV+  F+ ++
Sbjct: 131 ERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 1e-38
 Identities = 87/213 (40%), Positives = 108/213 (50%), Gaps = 51/213 (23%)

Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D K IK QIWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QE +R+IT                                                   R
Sbjct: 62  QESFRSIT---------------------------------------------------R 70

Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
            YYRGA GALLVYDI +  T+ ++  WL + R H+  N+VIML+GNKSDL   R V  +E
Sbjct: 71  SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREE 130

Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
            + FA  + L F+ETSA  + NVE AF N    
Sbjct: 131 GEAFAREHGLIFMETSAKTACNVEEAFINTAKE 163

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 2e-38
 Identities = 88/215 (40%), Positives = 107/215 (49%), Gaps = 51/215 (23%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ I V  K +K QIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
           AGQER+R++T                                                  
Sbjct: 62  AGQERFRSVT-------------------------------------------------- 71

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
            R YYRGA GALLVYDI    TY  +  WL + R  A QNIVI+L GNK DL   R V  
Sbjct: 72  -RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF 130

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
            EA  FA+ N L F+ETSAL   NVE AF      
Sbjct: 131 LEASRFAQENELMFLETSALTGENVEEAFVQCARK 165

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 1e-36
 Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 51/218 (23%)

Query: 5   EDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI 64
           +++     K+++IG+SGVGKS+LL RFT + F+ E  +TIGV+F  ++I VD    K  I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 65  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGP 124
           WDTAGQER+R +T                                               
Sbjct: 61  WDTAGQERFRTLT----------------------------------------------- 73

Query: 125 PSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRA 184
                 YYRGA G +LVYD+ +  T+  ++ WL EL  +  +N ++ ++      +  R 
Sbjct: 74  ----PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE 129

Query: 185 VPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           V  +E   FA ++++ FIE SA     V+ AF+ ++  
Sbjct: 130 VDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK 167

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 9e-36
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 51/211 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+V +G+  VGK++L++RF  + F+   ++TIG++F ++++ ++ +TI+ Q+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++                                                      Y
Sbjct: 61  RFRSLI---------------------------------------------------PSY 69

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
            R +  A++VYDI    +++   +W+ ++R     +++IMLVGNK+DL   R V  +E +
Sbjct: 70  IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGE 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A+  N+ FIETSA    NV+  F+ +  A
Sbjct: 130 RKAKELNVMFIETSAKAGYNVKQLFRRVAAA 160

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 9e-34
 Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 51/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +KVV++G  GVGKS L  +F    F  +   TI  +F  + I+VD      +I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ ++   Y +   G +LVY +    ++++++    ++                      
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRV------------------- 103

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                             + + ++LVGNK DL   R V + E +
Sbjct: 104 -------------------------------KRYEKVPVILVGNKVDLESEREVSSSEGR 132

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             AE     F+ETSA   T V+  F  I+
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 2e-33
 Identities = 64/213 (30%), Positives = 105/213 (49%), Gaps = 49/213 (23%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
             LFKV+L+GD GVGKS+L++R+  N+F+ +   TIGVEF  + ++VD   +  QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQER+R++ + +YRG+   LL + +    +++N+  W +E   +AD              
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVK------------ 111

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                                ++   +++GNK D+   R V  +
Sbjct: 112 -----------------------------------EPESFPFVILGNKIDISE-RQVSTE 135

Query: 189 EAKTFAERN-NLSFIETSALDSTNVETAFQNIL 220
           EA+ +   N +  + ETSA D+TNV  AF+  +
Sbjct: 136 EAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 7e-32
 Identities = 75/209 (35%), Positives = 108/209 (51%), Gaps = 51/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           RY ++                                                      Y
Sbjct: 67  RYHSLA---------------------------------------------------PMY 75

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
           YRGA  A++VYDI    ++   + W++EL+  A  NIVI L GNK+DL + RAV   EA+
Sbjct: 76  YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ 135

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
           ++A+ N+L F+ETSA  S NV   F  I 
Sbjct: 136 SYADDNSLLFMETSAKTSMNVNEIFMAIA 164

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  110 bits (274), Expect = 5e-31
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 51/210 (24%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++G  GVGKS L  +F  +EF  + + T    +  + + +D + ++  I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 62

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           E Y AI   Y+R   G L V+ I +  ++     +  ++                     
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI--------------------- 101

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                        LR   D+N+  +LVGNKSDL   R V  +EA
Sbjct: 102 -----------------------------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 132

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNIL 220
           K  A++ N++++ETSA    NV+  F +++
Sbjct: 133 KNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 7e-31
 Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 51/211 (24%)

Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           Y FKVVL+G+  VGK++L+ R+  N+FN +  +T+G  F T+ + +  K +   IWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QER+ A+                                                     
Sbjct: 62  QERFHALG---------------------------------------------------P 70

Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
            YYR + GA+LVYDI    +++ V+ W++ELR      I + +VGNK DL   R V   E
Sbjct: 71  IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQE 130

Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNIL 220
           A+++AE        TSA  +  +E  F ++ 
Sbjct: 131 AESYAESVGAKHYHTSAKQNKGIEELFLDLC 161

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 54/213 (25%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           +FK+++IGDS VGK+ L  RF    F   +++TIGV+F  R++ +D + IK Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 71  ERY-RAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           ER+ +++   YYR     + VYD+    ++ ++  W+ E + H   N             
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN------------- 108

Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                                +I  +LVGNK DLR    VP D 
Sbjct: 109 -------------------------------------DIPRILVGNKCDLRSAIQVPTDL 131

Query: 190 AKTFAERNNLSFIETSALDST---NVETAFQNI 219
           A+ FA+ +++   ETSA +     +VE  F  +
Sbjct: 132 AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 6e-29
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 41/217 (18%)

Query: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWD 66
               + K V++GD  VGK+ LL  +  + F  E   T+  +    S+ V  K     ++D
Sbjct: 5   PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYD 63

Query: 67  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
           TAGQE Y  +    Y      L+ + +    +++NV+            N+  +L+G   
Sbjct: 64  TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 123

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
            L              D  K L   N  +                           + + 
Sbjct: 124 DL-------------RDDPKTLARLNDMKE--------------------------KPIC 144

Query: 187 ADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA 222
            ++ +  A+      ++E SAL    ++T F   + A
Sbjct: 145 VEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 7e-29
 Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 51/214 (23%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
               K+V++G  GVGKS L  +F ++ F          +  T+   VD    +  I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYTKICSVDGIPARLDILDTA 62

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQE + A+   Y R   G LLV+ I    ++  V +                        
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKL----------------------- 99

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPAD 188
                                      + + LR     +  ++LVGNK+DL   R VP  
Sbjct: 100 ---------------------------FTQILRVKDRDDFPVVLVGNKADLESQRQVPRS 132

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNILTA 222
           EA  F   +++++ E SA    NV+ AF+ ++ A
Sbjct: 133 EASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA 166

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-27
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 51/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +++V++G  GVGKS L  +F ++ F  +   TI  +  T+   +D +  +  I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            + A+   Y R   G LLV+ +    ++E + ++ R+                       
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQ----------------------- 101

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       LR        ++L+GNK+DL H R V  +E +
Sbjct: 102 ---------------------------ILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQ 134

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A +  ++++E SA    NV+ AF  ++
Sbjct: 135 QLARQLKVTYMEASAKIRMNVDQAFHELV 163

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 52/210 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +F +  F  +   TI  +   + ++VD +    +I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+   Y +   G  LVY I    T+ +++                            
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL-------------------------- 96

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                     + LR    +++ ++LVGNK DL   R V  ++ +
Sbjct: 97  ------------------------REQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ 132

Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNIL 220
             A +  N +F+E+SA    NV   F +++
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-27
 Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 41/212 (19%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N+F  E   T+  +    ++ +  +     ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y  +    Y      L+ + +    ++ENV+        H       +LVG    LR  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD- 121

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                 +    E                       + +  + A+
Sbjct: 122 ----------------------DPSTIEKLAK----------------NKQKPITPETAE 143

Query: 192 TFAER-NNLSFIETSALDSTNVETAFQNILTA 222
             A     + ++E SAL    ++  F   + A
Sbjct: 144 KLARDLKAVKYVECSALTQKGLKNVFDEAILA 175

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 47/210 (22%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ + VD + +  QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
           ER++++  A+YRGA   +LV+D+    T++ ++ W  E    A                 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQA----------------- 104

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                              +N   +++GNK DL + +       
Sbjct: 105 ------------------------------SPRDPENFPFVVLGNKIDLENRQVATKRAQ 134

Query: 191 KTFAERNNLSFIETSALDSTNVETAFQNIL 220
                +NN+ + ETSA ++ NVE AFQ I 
Sbjct: 135 AWCYSKNNIPYFETSAKEAINVEQAFQTIA 164

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 51/208 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KV L+GD+GVGKS+++ RF  + F+     TIG  F T+++Q   +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+RA+                                                      Y
Sbjct: 65  RFRALA---------------------------------------------------PMY 73

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
           YRG+  A++VYDI K  T+  ++ W+RELR H   +IV+ + GNK DL  +R V   +AK
Sbjct: 74  YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 133

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
            +A+  +  F+ETSA ++ N+   F  I
Sbjct: 134 DYADSIHAIFVETSAKNAININELFIEI 161

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 7e-27
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 52/211 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++G  GVGKS L  +  +N F  E   TI   +  + +  D +T    I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQE 62

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y A+   Y R   G L V+ I    ++E++ ++  +++   D +               
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD--------------- 107

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                              ++ ++LVGNK D    R V + +A+
Sbjct: 108 -----------------------------------DVPMVLVGNKCD-LAARTVESRQAQ 131

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILTA 222
             A    + +IETSA     VE AF  ++  
Sbjct: 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.8 bits (242), Expect = 3e-26
 Identities = 56/210 (26%), Positives = 90/210 (42%), Gaps = 52/210 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +K+V++GD GVGKS L  +F +  F  +   TI   +  +  ++D +     + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQE 63

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            + A+   Y R   G L+VY +    ++E+V+R+                          
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF-------------------------- 97

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                       LR    ++  ++LV NK DL HLR V  D+ K
Sbjct: 98  ------------------------HQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGK 133

Query: 192 TFAERNNLSFIETSALDST-NVETAFQNIL 220
             A + N+ +IETSA D   NV+  F +++
Sbjct: 134 EMATKYNIPYIETSAKDPPLNVDKTFHDLV 163

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.4 bits (241), Expect = 5e-26
 Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 48/208 (23%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+VL+G++ VGKS+++ RF  N+F    + TIG  F T+ + +++ T+K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           + ++   YYR A  AL+VYD+ K  ++     W++EL + A ++I+I LVG         
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG--------- 115

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                        D   +                R V  +E + 
Sbjct: 116 --------------------------NKIDMLQEG-------------GERKVAREEGEK 136

Query: 193 FAERNNLSFIETSALDSTNVETAFQNIL 220
            AE   L F ETSA    NV   F  I 
Sbjct: 137 LAEEKGLLFFETSAKTGENVNDVFLGIG 164

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 4e-25
 Identities = 48/209 (22%), Positives = 76/209 (36%), Gaps = 50/209 (23%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           ++V + G  GVGKS+L+ RF +  F      T+   +       D+     QI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSH 61

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++ A+           +LVY I    + E ++    ++ +                    
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK------------------ 103

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                             ++I IMLVGNK D    R V + EA+
Sbjct: 104 -------------------------------GDVESIPIMLVGNKCDESPSREVQSSEAE 132

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
             A     +F+ETSA  + NV+  FQ +L
Sbjct: 133 ALARTWKCAFMETSAKLNHNVKELFQELL 161

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.1 bits (235), Expect = 4e-25
 Identities = 49/224 (21%), Positives = 76/224 (33%), Gaps = 65/224 (29%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K V++GD  VGK+ LL  +T N F  E   T+  +  + ++ VD K +   +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y  +                                                       
Sbjct: 65  DYDRLR---------------------------------------------------PLS 73

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP----- 186
           Y     +L+ + +    ++ENV         H   N  I+LVG K DLR  +        
Sbjct: 74  YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 133

Query: 187 -------ADEAKTFA-ERNNLSFIETSALDSTNVETAFQNILTA 222
                    +    A E   + ++E SAL    ++T F   + A
Sbjct: 134 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.8 bits (234), Expect = 5e-25
 Identities = 56/212 (26%), Positives = 103/212 (48%), Gaps = 50/212 (23%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI-QVDQKTIKAQIWDTAG 69
           + KV+++GDSGVGK++L+ R+  ++++ + K+TIG +F T+ +     K    Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 70  QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLR 129
           QER++++  A+YRGA   +LVYD+    ++EN++ W  E   HA+ N             
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN------------- 108

Query: 130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADE 189
                                             + +    +++GNK D    + + +++
Sbjct: 109 ----------------------------------SPETFPFVILGNKIDAEESKKIVSEK 134

Query: 190 AKTF--AERNNLSFIETSALDSTNVETAFQNI 219
           +         ++    TSA ++ NV+TAF+ I
Sbjct: 135 SAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 166

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.2 bits (230), Expect = 2e-24
 Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 41/209 (19%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K+V++GD   GK+ LL   ++++F      T+  E     I+VD K ++  +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y  +    Y      L+ + I    + EN+         H   N+ I+LVG        
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG-------- 113

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                               N E   REL     + +                   +E +
Sbjct: 114 --------------NKKDLRNDEHTRRELAKMKQEPV-----------------KPEEGR 142

Query: 192 TFAERNN-LSFIETSALDSTNVETAFQNI 219
             A R     ++E SA     V   F+  
Sbjct: 143 DMANRIGAFGYMECSAKTKDGVREVFEMA 171

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 8e-24
 Identities = 31/209 (14%), Positives = 59/209 (28%), Gaps = 58/209 (27%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            +++++G    GK+ +L +    +    +  T+G    T       K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV----TYKNVKFNVWDVGGQD 67

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           + R +   YY G  G + V D A     +   +                           
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQE-------------------------- 101

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL---RHLRAVPAD 188
                                     R + D   ++ +I++  NK DL        +   
Sbjct: 102 ------------------------LHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK 137

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQ 217
              T     N     + A     +     
Sbjct: 138 LGLTRIRDRNWYVQPSCATSGDGLYEGLT 166

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.3 bits (225), Expect = 1e-23
 Identities = 49/221 (22%), Positives = 78/221 (35%), Gaps = 66/221 (29%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++GDS  GK+ LL  F ++ F      T+  E  T S ++D + I+  +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           Y  +                                                       Y
Sbjct: 63  YDNVR---------------------------------------------------PLSY 71

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLR------------ 180
             +   L+ +DI++  T ++V +  +        N  ++LVG KSDLR            
Sbjct: 72  PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNH 131

Query: 181 HLRAVPADEAKTFA-ERNNLSFIETSALDSTN-VETAFQNI 219
               V  D+    A +    ++IE SAL S N V   F   
Sbjct: 132 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 172

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 4e-23
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 54/209 (25%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           FK+VL+GD G GK+  + R    EF  +  +T+GVE        ++  IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           ++  +   YY  A  A++++D+   +TY+NV  W R+L                      
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC------------------ 105

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                             +NI I+L GNK D++  +        
Sbjct: 106 ----------------------------------ENIPIVLCGNKVDIKDRKVKAKSIV- 130

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
            F  + NL + + SA  + N E  F  + 
Sbjct: 131 -FHRKKNLQYYDISAKSNYNFEKPFLWLA 158

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 2e-22
 Identities = 26/212 (12%), Positives = 54/212 (25%), Gaps = 58/212 (27%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           +++++G    GK+ +L +    E       T           V+ K I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
            R +   Y++   G + V D                                        
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREE--------------------------- 89

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKS---DLRHLRAVPADE 189
                                   +R L +   ++ V+++  NK    +  +   +    
Sbjct: 90  -----------------------LMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 126

Query: 190 AKTFAERNNLSFIETSALDSTNVETAFQNILT 221
                   N     T A     +      +  
Sbjct: 127 GLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.5 bits (215), Expect = 3e-22
 Identities = 57/207 (27%), Positives = 89/207 (42%), Gaps = 52/207 (25%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K+V++G+  VGKS+++ R+ +  F  + K TIGV+F  R IQV+ + ++  +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
           + AIT AYYRGA   +LV+      ++E +  W  ++                       
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG------------------ 105

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                             +I   LV NK DL     +  +EA+ 
Sbjct: 106 ----------------------------------DIPTALVQNKIDLLDDSCIKNEEAEG 131

Query: 193 FAERNNLSFIETSALDSTNVETAFQNI 219
            A+R  L F  TS  +  NV   F+ +
Sbjct: 132 LAKRLKLRFYRTSVKEDLNVSEVFKYL 158

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (212), Expect = 6e-22
 Identities = 51/210 (24%), Positives = 78/210 (37%), Gaps = 51/210 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K+ ++G   VGKS+L  +F   +F      TI   F T+ I V+ +    Q+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 63

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
            Y      Y     G +LVY +    ++E ++                            
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVI-------------------------- 97

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                     + L       I IMLVGNK DL   R +  +E K
Sbjct: 98  ------------------------HGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK 133

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILT 221
             AE  N +F+E+SA ++      F+ I+ 
Sbjct: 134 ALAESWNAAFLESSAKENQTAVDVFRRIIL 163

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 83.1 bits (204), Expect = 1e-20
 Identities = 32/212 (15%), Positives = 59/212 (27%), Gaps = 58/212 (27%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            +++++G  G GK+ +L R    E    +K TIG    T    +  K +K  +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
             R     YY      + V D           + L  +                      
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE------------------- 113

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL---RHLRAVPAD 188
                                             Q+  +++  NK D         V  +
Sbjct: 114 -------------------------------EELQDAALLVFANKQDQPGALSASEVSKE 142

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
                 +  + S + +SA+    +      ++
Sbjct: 143 LNLVELKDRSWSIVASSAIKGEGITEGLDWLI 174

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.1 bits (204), Expect = 2e-20
 Identities = 28/234 (11%), Positives = 58/234 (24%), Gaps = 72/234 (30%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K++L+G    GKS  + +      +     T G+      +Q        ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIF----RMVDVGGQR 56

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
             R      +      + +  ++++            +                      
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM---------------------- 94

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                              E+   +   +     QN  ++L  NK DL   + + +    
Sbjct: 95  ------------------EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVD 136

Query: 192 TFAE--------------------------RNNLSFIETSALDSTNVETAFQNI 219
            F E                             +    T A D+ N+   F  +
Sbjct: 137 YFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV 190

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (200), Expect = 2e-19
 Identities = 26/228 (11%), Positives = 60/228 (26%), Gaps = 37/228 (16%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           Y    +++L+G    GKS ++ +            T G+       +     +   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIFE----TKFQVDKVNFHMFDV 54

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTY-----------ENVERWLRELRDHADQN 116
            GQ   R      +      + V   + +              E +  +     +   + 
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 117 IVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNK 176
           I ++L                   +           +E +  E   +          G  
Sbjct: 115 ISVILFL-------------NKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGED 161

Query: 177 SDLRHLRAVPADEAKTFAERNN-----LSFIETSALDSTNVETAFQNI 219
             +   +    DE    +  +           T A+D+ N+   F + 
Sbjct: 162 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC 209

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 50/210 (23%), Positives = 75/210 (35%), Gaps = 53/210 (25%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K+ + G +GVGKS L+ RF    F  E   T+   +      +D + +  +I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 61

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
                   + R   G +LVYDI    ++E V      L +                    
Sbjct: 62  DTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI------------------- 101

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                             +N+ ++LVGNK+DL H R V  +E +
Sbjct: 102 -------------------------------KKPKNVTLILVGNKADLDHSRQVSTEEGE 130

Query: 192 TFAERNNLSFIETSALDST-NVETAFQNIL 220
             A     +F E SA     N+   F  + 
Sbjct: 131 KLATELACAFYECSACTGEGNITEIFYELC 160

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 3e-19
 Identities = 47/210 (22%), Positives = 73/210 (34%), Gaps = 52/210 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           +KV+L+G  GVGKS L   F   E     ++        RSI VD +     ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
             R +           ++VY +    ++E                               
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL-------------------------- 93

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                    ++  R     ++ I+LVGNKSDL   R V  DE +
Sbjct: 94  ------------------------RVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNILT 221
             A   +  FIETSA    NV+  F+ ++ 
Sbjct: 130 ACAVVFDCKFIETSAALHHNVQALFEGVVR 159

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 2e-18
 Identities = 36/212 (16%), Positives = 65/212 (30%), Gaps = 58/212 (27%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            ++ ++GD+  GKS+L+ RF    +  +       E   + + VD +T    I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
             +     +   A   + V+ +    +++ V R                           
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRL-------------------------- 92

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSD--LRHLRAVPADE 189
                                    L  LR      + + LVG +        R V    
Sbjct: 93  ----------------------HGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 130

Query: 190 AKTFA-ERNNLSFIETSALDSTNVETAFQNIL 220
           A+    +    S+ ET A    NV+  FQ + 
Sbjct: 131 ARALCADMKRCSYYETCATYGLNVDRVFQEVA 162

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 9e-18
 Identities = 27/213 (12%), Positives = 60/213 (28%), Gaps = 58/213 (27%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KV+++G    GK+ +L +F+ NE              +   ++     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
             R+  + YY      ++V D             L ++  H                   
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH------------------- 111

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRH---LRAVPAD 188
                                             +   +++  NK D++    +  +   
Sbjct: 112 -------------------------------EDLRKAGLLIFANKQDVKECMTVAEISQF 140

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNILT 221
              T  + +        AL    +    + +++
Sbjct: 141 LKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 173

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (183), Expect = 1e-17
 Identities = 30/205 (14%), Positives = 60/205 (29%), Gaps = 45/205 (21%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
           K++ +G    GK+ LL     +       +T+   +   S ++    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
            R +   Y+    G + + D A    ++     L  L + A+      L   P ++    
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE------LKDVPFVILGNK 110

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
             A  A+   ++   L   N                                     ++ 
Sbjct: 111 IDAPNAVSEAELRSALGLLNTT----------------------------------GSQR 136

Query: 193 FAERNNLSFIETSALDSTNVETAFQ 217
              +  +     S +       AFQ
Sbjct: 137 IEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.8 bits (185), Expect = 1e-17
 Identities = 27/234 (11%), Positives = 62/234 (26%), Gaps = 75/234 (32%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            K++L+G    GKS ++ +           +  G+           K +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIVE----THFTFKDLHFKMFDVGGQR 53

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
             R      + G    +    ++ +      +  +  +                      
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRM---------------------- 91

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                             +E+++ +     +    +  I+L  NK DL   +   +    
Sbjct: 92  ------------------HESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTI 133

Query: 192 TFAERN--------------------------NLSFIETSALDSTNVETAFQNI 219
            + E                             +    T A D+ NV+  F  +
Sbjct: 134 CYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 187

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.7 bits (185), Expect = 1e-17
 Identities = 32/236 (13%), Positives = 64/236 (27%), Gaps = 74/236 (31%)

Query: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ 70
           L K++L+G    GKS  L +            T G+         + K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE----YDFEIKNVPFKMVDVGGQ 54

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRR 130
              R      +      L +   ++       +R    L +                   
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES------------------ 96

Query: 131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA 190
                                 +  +   + +    N+ I+L  NK+DL   +       
Sbjct: 97  ----------------------LNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIK 134

Query: 191 KTFAE---------------------------RNNLSFIETSALDSTNVETAFQNI 219
             F E                           +  L    T+A+++ N+   F+++
Sbjct: 135 DYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 190

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (180), Expect = 3e-17
 Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 52/214 (24%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDT 67
           +  ++VVLIG+ GVGKS L + F     +++S    +G +   R++ VD ++    + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 68  A-GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPS 126
              +     +     +     L+VY I    ++E       +LR       + +      
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI------ 114

Query: 127 LLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVP 186
                                                       +LVGNKSDL   R V 
Sbjct: 115 --------------------------------------------ILVGNKSDLVRCREVS 130

Query: 187 ADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
             E +  A   +  FIETSA    NV+  F+ I+
Sbjct: 131 VSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 164

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 73.6 bits (179), Expect = 4e-17
 Identities = 28/209 (13%), Positives = 58/209 (27%), Gaps = 52/209 (24%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            +++++G    GK+ +L +F   +       TI          ++ +  K  IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
             R+    Y+    G + V D A     ++ +R L+                        
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQS----------------------- 94

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                                    L E R      ++     +        A+      
Sbjct: 95  ------------------------LLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL 130

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNIL 220
                ++      SA+   ++      +L
Sbjct: 131 DSIRSHHWRIQGCSAVTGEDLLPGIDWLL 159

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 1e-16
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 57/212 (26%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            ++ L+G    GK+  ++     +FN +   T+G        ++ +  +  ++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
           R+R++   Y RG    + + D A     E  +  L  L D                    
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ----------------- 101

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL---RHLRAVPAD 188
                                             Q I ++++GNK DL      + +   
Sbjct: 102 ---------------------------------LQGIPVLVLGNKRDLPGALDEKELIEK 128

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
              +  +   +     S  +  N++   Q ++
Sbjct: 129 MNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 71.5 bits (174), Expect = 3e-16
 Identities = 31/215 (14%), Positives = 58/215 (26%), Gaps = 58/215 (26%)

Query: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
           D   +++L+G    GK+ LL +    + +  +  T G    +       +  K  +WD  
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSV----QSQGFKLNVWDIG 68

Query: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLL 128
           GQ + R    +Y+      + V D A    +E   + L EL +    +            
Sbjct: 69  GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLS------------ 116

Query: 129 RRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL---RHLRAV 185
                                                  + +++  NK DL        +
Sbjct: 117 --------------------------------------CVPVLIFANKQDLLTAAPASEI 138

Query: 186 PADEAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
                              SAL    V+     + 
Sbjct: 139 AEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 8e-14
 Identities = 29/212 (13%), Positives = 56/212 (26%), Gaps = 58/212 (27%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            +++++G  G GK+ +L R    E       T           V  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
             R     YY      + V D          +  L  + +                    
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE------------------- 101

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL---RHLRAVPAD 188
                                             +  ++++  NK D+        +   
Sbjct: 102 -------------------------------EELRKAILVVFANKQDMEQAMTSSEMANS 130

Query: 189 EAKTFAERNNLSFIETSALDSTNVETAFQNIL 220
                 +       +TSA   T ++ A + ++
Sbjct: 131 LGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 61.3 bits (147), Expect = 3e-12
 Identities = 29/212 (13%), Positives = 49/212 (23%), Gaps = 40/212 (18%)

Query: 8   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDT 67
           Y    K+V +G    GK+ LL     +                 S ++    +    +D 
Sbjct: 10  YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-----QHVPTLHPTSEELTIAGMTFTTFDL 64

Query: 68  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSL 127
            G  + R +   Y     G + + D A H      +  L  L        V +L      
Sbjct: 65  GGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL------ 118

Query: 128 LRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPA 187
                           I  +            LR+           G+            
Sbjct: 119 ----------------ILGNKIDRPEAISEERLREMFGLYGQTTGKGS------------ 150

Query: 188 DEAKTFAERNNLSFIETSALDSTNVETAFQNI 219
             +        L     S L        F+ +
Sbjct: 151 -VSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 20/209 (9%), Positives = 58/209 (27%), Gaps = 50/209 (23%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQER 72
            V+ +G    GK+ L  R    ++  +++++I    A   +  ++      I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 73  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY 132
              +   +   A   + V D          +R ++++ +                     
Sbjct: 61  RFQLLDRFKSSARAVVFVVDS------AAFQREVKDVAEF-------------------- 94

Query: 133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKT 192
                                   +         +  +++  NK D+    A  A   + 
Sbjct: 95  ---------------------LYQVLIDSMALKNSPSLLIACNKQDI--AMAKSAKLIQQ 131

Query: 193 FAERNNLSFIETSALDSTNVETAFQNILT 221
             E+   +   T +   + ++++      
Sbjct: 132 QLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 4/113 (3%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQI--WDTAG 69
             V + G++G GKS+ ++         E  +  GV   T      +      +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 70  QERYRAITSAYYR--GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
                     Y              I+     +N     + +     +   + 
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVR 169

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 11/111 (9%)

Query: 10  YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG 69
           Y   +++ G    GK++LL+  T +      + T+  +    +   D   +   + D  G
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGV--TLVDFPG 55

Query: 70  QERYRAITSAYYRGAVGA-----LLVYDIAKHLTYENVERWLRELRDHADQ 115
             + R   S Y +           +V              +L ++    + 
Sbjct: 56  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES 106

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (99), Expect = 6e-06
 Identities = 32/208 (15%), Positives = 53/208 (25%), Gaps = 52/208 (25%)

Query: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
            KVV+ G    GKS+LL+     E  + +    G         +    +   I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRY 131
                                    +    +ER  +E+                      
Sbjct: 61  EAS--------------------DEVERIGIERAWQEIEQADRVL--------------- 85

Query: 132 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAK 191
                               +      E        + I +V NK+D+         E  
Sbjct: 86  ---------FMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADI-------TGETL 129

Query: 192 TFAERNNLSFIETSALDSTNVETAFQNI 219
             +E N  + I  SA     V+    ++
Sbjct: 130 GMSEVNGHALIRLSARTGEGVDVLRNHL 157

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 3/110 (2%)

Query: 13  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAG--Q 70
           ++V++G   VGKS LL+R    +  + +    G      S ++  + I  +I DTAG   
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM 120
           E    +        +  +   DI   +   +      + +          
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRY 110

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 13/73 (17%), Positives = 22/73 (30%)

Query: 9  DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTA 68
          D   +V   G S  GKS+ L+  T  +    +  T G        +V        +    
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 69 GQERYRAITSAYY 81
            E    +   + 
Sbjct: 74 YAEVPEEMKRKWQ 86

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQE 71
           KV ++G   VGKS L +     E  L S    G        +V     K    DTAG  
Sbjct: 9  IKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 72 RYRAITSAYY 81
          R   +     
Sbjct: 68 RKSRVEPRTV 77

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 14 VVLIGDSGVGKSNLLSRFTRNEFNLESK 41
          V ++G   VGKS LL+     +    S 
Sbjct: 8  VAIVGKPNVGKSTLLNNLLGVKVAPISP 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.9
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.9
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.89
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.87
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.86
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.85
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.83
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.81
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.79
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.78
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.77
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.73
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.7
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.64
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.6
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.6
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.6
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.58
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.57
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.54
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.48
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.46
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.45
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.41
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.23
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.88
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.87
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.83
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.45
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.43
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.42
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.23
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.2
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.14
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.09
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.95
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.84
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.82
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.74
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.73
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.65
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.62
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.61
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.58
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.54
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.5
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.5
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.47
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.47
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.46
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.42
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.42
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.4
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.39
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.39
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.37
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.35
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.33
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.33
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.31
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.28
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.28
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.26
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.24
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.23
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.23
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.22
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.22
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.21
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.21
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.21
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.21
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.19
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.19
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.17
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.16
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.15
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.15
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.14
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.14
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.11
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.09
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.09
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.09
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.06
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.04
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.03
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.03
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.03
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.03
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.01
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.0
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.99
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.98
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.96
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.96
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.93
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.9
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.89
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.89
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.88
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.86
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.85
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.82
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.78
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.74
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.7
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.59
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.59
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.58
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.58
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.56
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.56
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.53
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.5
d1okkd2	207	GTPase domain of the signal recognition particle r	96.45
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.44
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.43
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.38
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.34
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.32
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.31
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.29
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.29
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.26
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.22
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.22
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.15
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.14
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.12
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.09
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.97
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.84
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.76
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.71
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.59
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.59
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.57
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.51
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.5
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.49
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.46
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.44
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.38
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.36
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.32
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.27
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.26
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.24
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.21
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.21
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.13
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.13
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.05
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.04
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.01
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.86
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.84
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.84
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.83
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.8
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.79
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.62
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.52
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.46
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.43
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.35
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.33
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.31
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.24
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.22
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.71
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.61
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.56
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.53
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.36
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.36
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.15
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.97
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.94
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.49
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.93
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.46
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.2
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.19
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	90.12
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.05
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.45
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.11
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.67
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.64
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.63
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	87.15
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.01
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.97
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	86.66
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.03
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.79
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.01
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.76
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	84.2
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.05
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.17
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.16
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	82.41
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	81.25

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.7e-36  Score=212.45  Aligned_cols=164  Identities=40%  Similarity=0.783  Sum_probs=148.4

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      +++.+||+|+|.+|||||||++++.++.+...+.++.+.+.....+......+.+.+||+||++++..++..+++++|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            57889999999999999999999999999888889988888888888889999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||+++++++..+..|+...                                                   .......
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~  110 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQI---------------------------------------------------KTYSWDN  110 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHCCSC
T ss_pred             EEEEECccchhhhhhhhhhhhh---------------------------------------------------hcccCCc
Confidence            9999999999998888554433                                                   3333457


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++++||+|+.+.+.+..++.+.++.+.++++++|||++|.|++++|++|++.
T Consensus       111 ~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~  165 (169)
T d3raba_         111 AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV  165 (169)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHH
Confidence            8999999999999888899999999999999999999999999999999999874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=212.61  Aligned_cols=164  Identities=43%  Similarity=0.795  Sum_probs=148.4

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      .+++.+||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++++
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            36788999999999999999999999999988888888889989999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.++..++..+..|+..+                                                   ......
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i---------------------------------------------------~~~~~~  109 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREI---------------------------------------------------EQYASN  109 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCT
T ss_pred             EEEeeecccchhhhhhhhhhhhh---------------------------------------------------cccccc
Confidence            99999999999999998665544                                                   333334


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +.|+++|+||+|+.+.+.+..++++.++...++++++|||++|+||+++|.+|++
T Consensus       110 ~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1         110 KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            7899999999999988888999999999999999999999999999999998875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.6e-36  Score=211.47  Aligned_cols=160  Identities=36%  Similarity=0.632  Sum_probs=146.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||+++|.++.+...+.++.+.+........++..+.+.+||++|+..+..+...++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999888889998888888888899999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++.+++.+..|++++.+                                                   .. .++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~---------------------------------------------------~~-~~~~i  109 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVA---------------------------------------------------EV-GDIPT  109 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH---------------------------------------------------HH-CSCCE
T ss_pred             Eeccchhhhhhcccccccccc---------------------------------------------------cC-CCceE
Confidence            999999999999877665533                                                   11 26899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+.+.+..++.+++++++++++++|||++|.|++++|+.|++-
T Consensus       110 ilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1         110 ALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             EEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             EEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence            9999999999888899999999999999999999999999999999999863

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=210.84  Aligned_cols=162  Identities=39%  Similarity=0.702  Sum_probs=141.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+|+|.+|||||||++++.++.+...+.++.+.+........++..+.+.+||++|+.++..++..++++++++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57999999999999999999999999999999999888988888889999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||++++++++.+..|++.+..                                                   ......|
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~---------------------------------------------------~~~~~~~  110 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRK---------------------------------------------------MLGNEIC  110 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH---------------------------------------------------HHGGGSE
T ss_pred             EEeCCchhHHHhhhhhhhhccc---------------------------------------------------ccccccc
Confidence            9999999999999976664432                                                   2234679


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++||+|+...+.++.++++.++.++++++++|||++|.|++++|++|++.
T Consensus       111 ~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~  163 (167)
T d1z08a1         111 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKR  163 (167)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             eeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHH
Confidence            99999999999888999999999999999999999999999999999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=208.83  Aligned_cols=164  Identities=53%  Similarity=0.877  Sum_probs=148.8

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      +++.+||+|+|.+|||||||++++.++.+...+.++.+.++.......++..+.+.+||++|++.+..++..++++++++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            46789999999999999999999999999988888888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||+++.+++..+..|+..+                                                   .......
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~  109 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDA---------------------------------------------------RNLTNPN  109 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCTT
T ss_pred             EEEeccCchHHHHHHHHHHHHH---------------------------------------------------Hhhcccc
Confidence            9999999999999988665544                                                   3333457


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++++||+|+...+....++++.++.+.++++++|||++|.|++++|+.|++.
T Consensus       110 ~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~  164 (166)
T d1z0fa1         110 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK  164 (166)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            8999999999998888888899999999999999999999999999999999874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-35  Score=208.37  Aligned_cols=163  Identities=32%  Similarity=0.455  Sum_probs=145.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+|+|.+|||||||+++++++.+...+.++.+.++ ...+.+++..+.+.+||++|...+..++..+++++++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4678999999999999999999999998888888887665 566778999999999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|||+++++++..+..|+..+.+.                                                  ....++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~  110 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDM--------------------------------------------------VGKVQI  110 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------HCSSCC
T ss_pred             hhcccchhhhhhhhhhhhhhhhhc--------------------------------------------------cccccc
Confidence            999999999999999776655321                                                  122468


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+...+.++.++++.++.++++++++|||++|.|++++|+.|++.
T Consensus       111 piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~  164 (167)
T d1xtqa1         111 PIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE  164 (167)
T ss_dssp             CEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHH
Confidence            999999999999888899999999999999999999999999999999999875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-35  Score=206.42  Aligned_cols=160  Identities=38%  Similarity=0.742  Sum_probs=146.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.++.+...+.++.+..........++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999999899888888888888889999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |+++..++..+..|+..+                                                   ......+.|++
T Consensus        81 d~~~~~s~~~i~~~~~~~---------------------------------------------------~~~~~~~~~ii  109 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDV---------------------------------------------------RTERGSDVIIM  109 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHH---------------------------------------------------HHHHTTSSEEE
T ss_pred             ccccccchhhhHhhHHHH---------------------------------------------------HHhcCCCceEE
Confidence            999999999998666544                                                   33333478999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+.+.+....++.++++.++++++++|||++|.|++++|++|++.
T Consensus       110 lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1         110 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            999999999888889999999999999999999999999999999999875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-34  Score=204.65  Aligned_cols=162  Identities=41%  Similarity=0.736  Sum_probs=147.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      ..+||+++|.+|||||||+++|.++.+.+.+.++.+..........+.....+.+||++|+..+..++..+++.++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999998998888888888888899999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||+++++++..+..|+...                                                   ........|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~  111 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVREL---------------------------------------------------RQHGPPSIV  111 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCTTSE
T ss_pred             EeeechhhhhhhHHHhhhhh---------------------------------------------------hhccCCcce
Confidence            99999999999998665544                                                   333345789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.++.++.+.++.+.++++++|||++|.||+++|..|++.
T Consensus       112 iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~  164 (167)
T d1z0ja1         112 VAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR  164 (167)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            99999999999888999999999999999999999999999999999999874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=206.87  Aligned_cols=165  Identities=32%  Similarity=0.506  Sum_probs=145.8

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      +..+.+||+++|.+|||||||++++.++.+...+.++. .+.....+.+++..+.+.+||++|+.++...+..+++++++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            34567999999999999999999999999988887765 45556778889999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||+++..++..+..|+..+.+                                                  .....
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~--------------------------------------------------~~~~~  110 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILR--------------------------------------------------VKDRD  110 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHH--------------------------------------------------HHTSS
T ss_pred             eeeecccccccccchhhhhhHHHHH--------------------------------------------------HhccC
Confidence            9999999999999999977665522                                                  11224


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.|+++|+||+|+...+....++.+.++.++++++++|||++|.|++++|+.|++.
T Consensus       111 ~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~  166 (173)
T d2fn4a1         111 DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRA  166 (173)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence            78999999999999888889999999999999999999999999999999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.4e-34  Score=206.10  Aligned_cols=162  Identities=34%  Similarity=0.569  Sum_probs=141.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+|+|.+|||||||+++++.+.+...+.++.+.++ ...+.+++..+.+.+||++|+.++..++..++++++++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            568999999999999999999999999888888887665 4566789999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||+++..+++.+..|++++.+.                                                  ....++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~p  111 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRV--------------------------------------------------KEDENVP  111 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------HCCTTSC
T ss_pred             EeeccchhhhhhHHHHHHHHHHh--------------------------------------------------hCCCCCc
Confidence            99999999999999777665331                                                  1224789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+.++.++.+.++...++++++|||++|.|++++|++|++.
T Consensus       112 iiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~  164 (168)
T d1u8za_         112 FLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE  164 (168)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence            99999999999888899999999999999999999999999999999999863

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=206.55  Aligned_cols=164  Identities=30%  Similarity=0.432  Sum_probs=143.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|.+|||||||+++++++.+...+.++.+..+ ......++..+.+.+||++|+..+...+..++++++++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            368999999999999999999999999888888887544 4456688899999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||.++++++..+..|+..+.+...                                                 ...++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~p  110 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKG-------------------------------------------------DVESIP  110 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC----------------------------------------------------CCC
T ss_pred             Eeecccccchhcccchhhhhhhhhc-------------------------------------------------cCCCCc
Confidence            9999999999999977766533111                                                 123689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      +++|+||+|+...+.+..++.++++.++++++++|||++|.|++++|+.|++.+
T Consensus       111 iilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         111 IMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             EEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            999999999998888999999999999999999999999999999999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=205.50  Aligned_cols=164  Identities=53%  Similarity=0.837  Sum_probs=148.1

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      +++.+||+++|.+|||||||++++.++.+...+.++.+.+.....+..++....+.+||++|+..+..++..+++.++++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            57889999999999999999999999999888888888888888888889999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||.++.+++..+..|+..+                                                   ......+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~  110 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDA---------------------------------------------------RMLASQN  110 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCTT
T ss_pred             EEEEecccchhHHHHhhhhccc---------------------------------------------------ccccCCc
Confidence            9999999999999888555544                                                   3333457


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+...+....++...++.+.++++++|||++|+|++++|+++++.
T Consensus       111 ~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~  165 (174)
T d2bmea1         111 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK  165 (174)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             eEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHH
Confidence            9999999999998888888999999999999999999999999999999998874

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-34  Score=203.81  Aligned_cols=159  Identities=31%  Similarity=0.396  Sum_probs=126.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|.+|||||||++++.+..+.... ++. .+.....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~-~~~-~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEA-EAA-GHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcC-Cee-eeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            79999999999999999999988764332 333 3444567778999999999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |++++.+++.+..|+.++....                                                  ...++|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~--------------------------------------------------~~~~~pii  109 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRAR--------------------------------------------------QTDDVPII  109 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHC--------------------------------------------------C--CCCEE
T ss_pred             cccccccccccccccchhhccc--------------------------------------------------ccccceEE
Confidence            9999999999997766653321                                                  12368999


Q ss_pred             EeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+||+|+...+.++..+.++++..+++++++|||++|.|++++|+.|++.
T Consensus       110 lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~  160 (168)
T d2gjsa1         110 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ  160 (168)
T ss_dssp             EEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence            999999999888899999999999999999999999999999999999863

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-34  Score=203.27  Aligned_cols=162  Identities=33%  Similarity=0.574  Sum_probs=143.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      |++||+++|.+|||||||++++.++.+.+.+.++.+..+ ......++..+.+.+||++|+..+..++..++++++++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            679999999999999999999999998888878776444 5566788999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||+++++++..+..|+..+.+.                                                  ....++|
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~--------------------------------------------------~~~~~~p  111 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRV--------------------------------------------------KDRESFP  111 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------HTSSCCC
T ss_pred             ecccccchhhhccchhhHHHHhh--------------------------------------------------ccccCcc
Confidence            99999999999999776655331                                                  1224689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC-CHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST-NVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~  222 (223)
                      +++++||+|+.+.+.++.+++++++.++++++++|||+++. ||+++|+.|++.
T Consensus       112 ~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~  165 (169)
T d1x1ra1         112 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV  165 (169)
T ss_dssp             EEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred             EEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHH
Confidence            99999999999888899999999999999999999999875 999999999875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-34  Score=203.39  Aligned_cols=164  Identities=93%  Similarity=1.330  Sum_probs=144.5

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++.+||+|+|.+|||||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.++++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            36789999999999999999999999999888888888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||.++++++..+..|+..+                                                   ......+
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i---------------------------------------------------~~~~~~~  109 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKEL---------------------------------------------------RDHADSN  109 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCTT
T ss_pred             EEEEECCCcccchhHHHHHHHH---------------------------------------------------HHhcCCC
Confidence            9999999999999998666554                                                   3333347


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+.+.+....+....+....+.++++|||++|.|++++|+++++.
T Consensus       110 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~  164 (175)
T d2f9la1         110 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE  164 (175)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHH
Confidence            8999999999999877788888888999999999999999999999999998763

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=207.45  Aligned_cols=167  Identities=25%  Similarity=0.408  Sum_probs=141.6

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcC
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRG   83 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~   83 (223)
                      ..-+....+||+|+|.+|||||||+++++.+.+...+.++.+ +.........+..+.+.+||++|+..+..++..++++
T Consensus         2 ~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~   80 (185)
T d2atxa1           2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   80 (185)
T ss_dssp             SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccc
Confidence            344567789999999999999999999999999888888875 4456666678888999999999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhc
Q psy15625         84 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDH  163 (223)
Q Consensus        84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  163 (223)
                      +|++++|||++++++++.+..|+...                                                  +...
T Consensus        81 a~~~ilv~d~t~~~Sf~~~~~~~~~~--------------------------------------------------~~~~  110 (185)
T d2atxa1          81 TDVFLICFSVVNPASFQNVKEEWVPE--------------------------------------------------LKEY  110 (185)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHH--------------------------------------------------HHHH
T ss_pred             cceeeeccccchHHHHHHHHHHHHHH--------------------------------------------------HHhc
Confidence            99999999999999998876433322                                                  2222


Q ss_pred             cCCCceEEEeecccchhh------------ccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        164 ADQNIVIMLVGNKSDLRH------------LRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       164 ~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       ..+.|+++|+||+|+.+            .+.++.++.++++.+++ ++|++|||++|.|++++|+.++++
T Consensus       111 -~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~  181 (185)
T d2atxa1         111 -APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA  181 (185)
T ss_dssp             -STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             -CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHH
Confidence             24789999999999864            45778899999999887 689999999999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=201.65  Aligned_cols=161  Identities=47%  Similarity=0.778  Sum_probs=146.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||+++|..+.+...+.++.+.++...........+.+.+||++|+..+..++..+++++++++++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            58999999999999999999999999999999998888888888889999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      +|.++.+++..+..|+..+                                                   ......+.|+
T Consensus        86 ~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~i  114 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKEL---------------------------------------------------QRQASPNIVI  114 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCTTCEE
T ss_pred             eccchhhHHHHHHHHhhhh---------------------------------------------------hhccCCCceE
Confidence            9999999999998655544                                                   3333457999


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+...+.++.++.+.++...++++++|||++|+||+++|+.|++.
T Consensus       115 ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~  166 (170)
T d1r2qa_         115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK  166 (170)
T ss_dssp             EEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             EeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence            9999999999888999999999999999999999999999999999999864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-34  Score=203.17  Aligned_cols=162  Identities=53%  Similarity=0.872  Sum_probs=142.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+|+|.+|||||||++++.++.+...+.++.+.+.........+..+.+.+||++|+..+..++..+++.+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            56899999999999999999999999988888888888888888888889999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||++++.++..+..|+..+                                                   ......++|
T Consensus        82 v~d~~~~~sf~~~~~~~~~~---------------------------------------------------~~~~~~~~p  110 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDA---------------------------------------------------RQHSSSNMV  110 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCTTCE
T ss_pred             EEeecChHHHHhHHHHHHHH---------------------------------------------------HHhCCCCCe
Confidence            99999999999998665544                                                   333345789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+...+....++...++.+.++++++|||++|.|++++|..|++.
T Consensus       111 iilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~  163 (173)
T d2a5ja1         111 IMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE  163 (173)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             EEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            99999999999888899999999999999999999999999999999998864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-34  Score=206.23  Aligned_cols=165  Identities=48%  Similarity=0.856  Sum_probs=119.9

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..++.+||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++++
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            46788999999999999999999999999888888898889989999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||++++.++..+..|++.+                                                   ......
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~  110 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNI---------------------------------------------------EEHASA  110 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCT
T ss_pred             EEEEEECCChhhHHHHHHHHHHh---------------------------------------------------hhhccC
Confidence            99999999999999998665544                                                   333345


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.|+++|+||+|+...+....++...++...++++++|||++|+|++++|++|++.
T Consensus       111 ~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~  166 (173)
T d2fu5c1         111 DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARD  166 (173)
T ss_dssp             TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHH
T ss_pred             CceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            78999999999998877888888999999999999999999999999999999863

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=204.75  Aligned_cols=164  Identities=52%  Similarity=0.895  Sum_probs=149.0

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      .++..+||+|+|.+|||||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            46788999999999999999999999999988888999888888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|||.++.+++.....|+..+                                                   ......
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~  110 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEI---------------------------------------------------DRYATS  110 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCT
T ss_pred             EEEEEeCcchhhhhhHhhhhhhh---------------------------------------------------hhcccC
Confidence            99999999999999988555444                                                   333345


Q ss_pred             CceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ..|+++|+||+|+.+.+.+..++...++...++++++|||++|.|++++|+.|++
T Consensus       111 ~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~  165 (194)
T d2bcgy1         111 TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR  165 (194)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHH
Confidence            7899999999999988889999999999999999999999999999999999976

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-33  Score=198.27  Aligned_cols=162  Identities=40%  Similarity=0.712  Sum_probs=145.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      .++||+++|.+|||||||++++.++.+...+.++.+.++....+..++..+.+.+||++|+..+..++..++++++++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46899999999999999999999999999999999988888899899999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||.+++.++..+..|+.+.                                                   ........|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~  110 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKEL---------------------------------------------------HEQASKDII  110 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHH---------------------------------------------------HHHSCTTCE
T ss_pred             EEeCCcccchhhhhhhhhhh---------------------------------------------------ccccccccc
Confidence            99999999999998665433                                                   333334789


Q ss_pred             EEEeecccchhh---ccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRH---LRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++||+|+..   .+.+..++.++++...++++++|||++|.|++++|+.|++.
T Consensus       111 ~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~  166 (170)
T d1ek0a_         111 IALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred             eeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHH
Confidence            999999999864   46788899999999999999999999999999999999763

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-33  Score=200.54  Aligned_cols=161  Identities=31%  Similarity=0.523  Sum_probs=142.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|.+|||||||+++++++.+...+.++.+ +.......+++..+.+.+||++|+..+......++++++++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            468999999999999999999999999888878776 4556677788999999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||++++.++..+..|+..+...                                                  ....++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------~~~~~~p  110 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRV--------------------------------------------------KRYEKVP  110 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH--------------------------------------------------TTTSCCC
T ss_pred             eeeecchhhhhhhhchhhhhhhh--------------------------------------------------ccCCCCC
Confidence            99999999999999766654221                                                  1124789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      +++|+||+|+...+....++.+.++.+.++++++|||++|.|++++|+.|++
T Consensus       111 iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~  162 (167)
T d1kaoa_         111 VILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR  162 (167)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHH
Confidence            9999999999988889999999999999999999999999999999999976

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=204.69  Aligned_cols=165  Identities=39%  Similarity=0.744  Sum_probs=143.5

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcC----------eEEEEEEEeCCCCcccccc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQ----------KTIKAQIWDTAGQERYRAI   76 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~D~~G~~~~~~~   76 (223)
                      .++..+||+++|.+|||||||+++|.++.+...+.++.+.++....+.+++          ..+.+.+||++|++++..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            367889999999999999999999999998888888877777776665543          3467999999999999999


Q ss_pred             chhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHH
Q psy15625         77 TSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERW  156 (223)
Q Consensus        77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  156 (223)
                      +..++++++++++|||++++.+++.+..|+.                                                 
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~-------------------------------------------------  111 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS-------------------------------------------------  111 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHH-------------------------------------------------
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccc-------------------------------------------------
Confidence            9999999999999999999999999985544                                                 


Q ss_pred             HHHhhhc-cCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        157 LRELRDH-ADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       157 ~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        .+... .....|+++|+||+|+.+.+.++.+++++++.++++++++|||++|.|++++|++|++.
T Consensus       112 --~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~  176 (186)
T d2f7sa1         112 --QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL  176 (186)
T ss_dssp             --TCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             --hhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence              33222 23468999999999999988999999999999999999999999999999999999874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-33  Score=200.08  Aligned_cols=161  Identities=30%  Similarity=0.548  Sum_probs=139.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+|+|.+|||||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|..++...+..+++.++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999998888877765 55567777899999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||.+++.++..+..|+..+.+                                                  .......|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~p~  113 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILR--------------------------------------------------VKDRDEFPM  113 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH--------------------------------------------------HHTSSCCSE
T ss_pred             eccccccchhhHHHHhHHHHh--------------------------------------------------hcccCCCCE
Confidence            999999999999877665422                                                  122236899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+...+.+..++.++++.+.++++++|||++|.|++++|+.|++.
T Consensus       114 ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~  165 (171)
T d2erya1         114 ILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRV  165 (171)
T ss_dssp             EEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHH
Confidence            9999999999888899999999999999999999999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-33  Score=200.37  Aligned_cols=161  Identities=29%  Similarity=0.429  Sum_probs=138.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      ..||+|+|.+|||||||++++..+.+...+.++.+ +........++..+.+.+||++|+..+..++..++++++++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            36899999999999999999999999888888876 45566677888999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++++++.+..|+...                                                  +... ..++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~--------------------------------------------------~~~~-~~~~pi  109 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPE--------------------------------------------------VKHF-CPNVPI  109 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHH--------------------------------------------------HHHH-STTSCE
T ss_pred             cccchhHHHHHHHHHHHHH--------------------------------------------------HHHh-CCCCce
Confidence            9999999999887544322                                                  2222 247899


Q ss_pred             EEeecccchhh------------ccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhhC
Q psy15625        171 MLVGNKSDLRH------------LRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTAN  223 (223)
Q Consensus       171 ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~  223 (223)
                      ++|+||+|+.+            .+.++.++.+.++.+.+ .++++|||++|.|++++|+.+++++
T Consensus       110 ilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         110 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             EEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence            99999999864            24578889999999988 4799999999999999999999864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-33  Score=198.05  Aligned_cols=165  Identities=43%  Similarity=0.770  Sum_probs=136.7

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc-cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      -++..+||+++|.+|||||||++++.++.+.... .++.+.++....+..++..+.+.+|||+|++.+..++..++++++
T Consensus         2 ~~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             CCceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            3678899999999999999999999998875444 455667777778888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||.++..++..+..|+..+                                                   .....
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~  110 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEI---------------------------------------------------HEYAQ  110 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSC
T ss_pred             eeEEEecCCcccchhhhhhhhhhh---------------------------------------------------hhccC
Confidence            999999999999998888554433                                                   33333


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ...|+++|+||+|+...+.+..+++..++...++++++|||++|.|++++|++|++.
T Consensus       111 ~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~  167 (170)
T d2g6ba1         111 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE  167 (170)
T ss_dssp             TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence            478999999999999888899999999999999999999999999999999999864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-33  Score=197.26  Aligned_cols=160  Identities=31%  Similarity=0.465  Sum_probs=136.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||+++++.+.+...+.++.+.++.. ....++..+.+.+||++|...+. ....++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4899999999999999999999999988888998777644 44578888999999999987664 456788999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||+++++++..+..|+.....                                                  .....+.|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~--------------------------------------------------~~~~~~~pi  109 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDE--------------------------------------------------IKKPKNVTL  109 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH--------------------------------------------------HHTTSCCCE
T ss_pred             cccCCccchhhhhhhcccccc--------------------------------------------------cccccCcce
Confidence            999999999999866543311                                                  112246899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCC-CHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDST-NVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~  222 (223)
                      ++|+||+|+...+.++.+++++++.++++++++|||++|. ||+++|..|++.
T Consensus       110 ilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~  162 (168)
T d2atva1         110 ILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCRE  162 (168)
T ss_dssp             EEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred             eeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHH
Confidence            9999999999888899999999999999999999999998 599999998864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=203.99  Aligned_cols=158  Identities=34%  Similarity=0.624  Sum_probs=134.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||+++++++.+...+.++++.++.......++..+.+.+||++|+..+..++..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            47999999999999999999999999888889998888888888899999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++++++.+..|+..+.+                                                   .. .++|+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~---------------------------------------------------~~-~~~pi  110 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVR---------------------------------------------------VC-ENIPI  110 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHH---------------------------------------------------HH-CSCCE
T ss_pred             cccccccccchhHHHHHHHhh---------------------------------------------------cc-CCCce
Confidence            999999999999877665522                                                   11 36899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+...+.  .++...++...++++++|||++|.|++++|++|++.
T Consensus       111 ilvgnK~Dl~~~~~--~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~  160 (170)
T d1i2ma_         111 VLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  160 (170)
T ss_dssp             EEEEECCCCSCSCC--TTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred             eeecchhhhhhhhh--hhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999976443  345567888899999999999999999999999863

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-32  Score=196.35  Aligned_cols=164  Identities=45%  Similarity=0.762  Sum_probs=145.3

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ..+++||+++|.+|||||||+++|.++.+...+.++.+..+....+.+++..+.+.+||++|+.++..++..++++++++
T Consensus         4 ~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i   83 (177)
T d1x3sa1           4 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             ccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            35679999999999999999999999999989888888888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||++++.++..+..|+.++...                                                  .....
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~  113 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDNWLNELETY--------------------------------------------------CTRND  113 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTC--------------------------------------------------CSCSC
T ss_pred             EEEEECCCccccccchhhhhhhccc--------------------------------------------------ccccc
Confidence            9999999999999888665544221                                                  11236


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++++||.|... +.+..++.++++..+++++++|||++|+|++++|+++++.
T Consensus       114 ~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~  167 (177)
T d1x3sa1         114 IVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK  167 (177)
T ss_dssp             CEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             eeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            89999999999764 6788899999999999999999999999999999999874

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-32  Score=195.51  Aligned_cols=161  Identities=29%  Similarity=0.515  Sum_probs=141.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||++++..+.+...+.++.+..+ ...+..++..+.+.+||++|+..+...+..++++++++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            58999999999999999999999999888888877554 55566788899999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++.+++.+..|+..+.+                                                  .....++|+
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~--------------------------------------------------~~~~~~~p~  111 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILR--------------------------------------------------VKDTEDVPM  111 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHH--------------------------------------------------HHCCSCCCE
T ss_pred             eeccchhhhHhHHHHHHHHHH--------------------------------------------------hcCCCCCeE
Confidence            999999999999977665532                                                  112347899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+...+....++...++.+ .++++++|||++|.|++++|++|++.
T Consensus       112 ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~  164 (167)
T d1c1ya_         112 ILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ  164 (167)
T ss_dssp             EEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHH
Confidence            99999999998888888899999887 47899999999999999999999864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-33  Score=196.75  Aligned_cols=160  Identities=46%  Similarity=0.847  Sum_probs=137.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||.+++++++.+..|+...                                                   ........|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~  110 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTV---------------------------------------------------NEHANDEAQL  110 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHH---------------------------------------------------HHHSCTTCEE
T ss_pred             EECCCccCHHHHHhhhhhh---------------------------------------------------hccccCccee
Confidence            9999999998888554433                                                   3333457899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++|.|+.+ +....++.++++.++++++++|||++++|++++|++|++.
T Consensus       111 i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~  161 (166)
T d1g16a_         111 LLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  161 (166)
T ss_dssp             EEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             eeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence            99999999865 5677889999999999999999999999999999999875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-32  Score=194.97  Aligned_cols=167  Identities=38%  Similarity=0.708  Sum_probs=142.8

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      .++.+||+|+|.+|||||||++++.++.+...+.++.+..........++..+.+.+||++|.......+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            35679999999999999999999999999988888888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++++|.+++.++..+..|++++....                                               ......+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~-----------------------------------------------~~~~~~~  115 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYA-----------------------------------------------DVKEPES  115 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-----------------------------------------------TCSCTTT
T ss_pred             EEEEeeecccccchhhhHHHHHHHHh-----------------------------------------------ccccCCC
Confidence            99999999999999998877663321                                               2222346


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .|+++|+||+|+.+ +.+..++.+.++.+. .+++++|||+++.||+++|++|++.
T Consensus       116 ~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~  170 (174)
T d1wmsa_         116 FPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR  170 (174)
T ss_dssp             SCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence            89999999999865 678899999999876 4899999999999999999999874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-32  Score=195.97  Aligned_cols=163  Identities=30%  Similarity=0.453  Sum_probs=138.1

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      +++.+||+|+|.+|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|+..+..++..++++++++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46789999999999999999999999999888888876 44456677889999999999999999999999999999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||+++.++++++..|+...                                                  +... ..+
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~--------------------------------------------------~~~~-~~~  109 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPE--------------------------------------------------VRHH-CPN  109 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHH--------------------------------------------------HHHH-STT
T ss_pred             eeeeccchHHHHHHHHHHHHHH--------------------------------------------------HHHh-CCC
Confidence            9999999999999987533322                                                  2222 237


Q ss_pred             ceEEEeecccchhhc------------cCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHL------------RAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+...            +.....+...++...+ ++|++|||++|.||+++|+.|++.
T Consensus       110 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~  177 (183)
T d1mh1a_         110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA  177 (183)
T ss_dssp             SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHH
Confidence            899999999998542            3456678888888877 789999999999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-32  Score=193.67  Aligned_cols=161  Identities=32%  Similarity=0.535  Sum_probs=140.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|.+|||||||+++|+++.+...+.++.+..+.. .....+..+.+.+||++|+..+...+..++++++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            35899999999999999999999999988888888766644 45578888999999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||.+++.+++.+..|+..+.+.                                                  ....++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~p  110 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRV--------------------------------------------------KDSDDVP  110 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------HTCSSCC
T ss_pred             eecccccccHHHHHHHHHHHHHh--------------------------------------------------cCCCCCe
Confidence            99999999999999776655331                                                  1123689


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.. +.+..+++++++..+++++++|||++|+|++++|++|++.
T Consensus       111 iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~  162 (166)
T d1ctqa_         111 MVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE  162 (166)
T ss_dssp             EEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence            999999999864 6678889999999999999999999999999999999864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=196.69  Aligned_cols=165  Identities=35%  Similarity=0.673  Sum_probs=127.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEE-cCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      .+||+++|.+|||||||++++.++++...+.++.+.......... +.....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999988888887776666655554 3456778999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      +||++++.++..+..|++++...                                               .......++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-----------------------------------------------~~~~~~~~~p  114 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVH-----------------------------------------------ANVNSPETFP  114 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-----------------------------------------------HCCSCTTTCC
T ss_pred             Eeecccccccchhhhcchhhhhh-----------------------------------------------hhhcccccCc
Confidence            99999999999999887766432                                               1222234789


Q ss_pred             EEEeecccchhhcc-CCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLR-AVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||+|+.+.+ .++.++.++++.+.+ +++++|||++|.|++++|++|++.
T Consensus       115 iilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~  169 (175)
T d1ky3a_         115 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS  169 (175)
T ss_dssp             EEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence            99999999997654 467788999998886 789999999999999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-32  Score=192.03  Aligned_cols=160  Identities=39%  Similarity=0.737  Sum_probs=140.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc-cchhhhcCCcEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA-ITSAYYRGAVGALL   89 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-~~~~~~~~~~~~i~   89 (223)
                      .+||+++|.+|||||||++++..+.+...+.++.+.........+......+.+||++|...+.. .+..+++++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999999989888888888888999999999999999776654 46678999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||++++++++.+..|+.++.+.                                                  ....++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~--------------------------------------------------~~~~~~p  111 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQH--------------------------------------------------LLANDIP  111 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH--------------------------------------------------CCCSCCC
T ss_pred             EEEeehhhhhhhhhhhhHHHHhh--------------------------------------------------ccCCCCe
Confidence            99999999999998666655331                                                  1224789


Q ss_pred             EEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCC---CCCHHHHHHHHH
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALD---STNVETAFQNIL  220 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~i~  220 (223)
                      +++|+||+|+.+.+.++.++++++++++++++++|||++   +.||+++|++|+
T Consensus       112 i~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         112 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             EEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence            999999999998888999999999999999999999997   469999999874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=194.92  Aligned_cols=160  Identities=25%  Similarity=0.393  Sum_probs=136.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      ++||+++|.+|||||||++++..+.+...+.++.+. ........++..+.+.+||++|+.++..++..+++.++++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            689999999999999999999999998888888864 4455666788889999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++++++++..|+...                                                  +.. ...+.|+
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~--------------------------------------------------~~~-~~~~~~i  110 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPE--------------------------------------------------ITH-HCPKTPF  110 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHH--------------------------------------------------HHH-HCTTCCE
T ss_pred             cccchHHHHHHHHHHHHHH--------------------------------------------------Hhh-cCCCCce
Confidence            9999999999997543322                                                  222 2247899


Q ss_pred             EEeecccchhh------------ccCCChHHHHHHHHHc-CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRH------------LRAVPADEAKTFAERN-NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+            .+.++.++.++++.+. ++++++|||++|.||+++|+.+++.
T Consensus       111 ~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~  175 (191)
T d2ngra_         111 LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILA  175 (191)
T ss_dssp             EEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence            99999999864            2457889999999886 4789999999999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.7e-32  Score=195.80  Aligned_cols=164  Identities=39%  Similarity=0.725  Sum_probs=142.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+|+|.+|||||||+++++++.+...+.++.+.++........+..+.+.+||++|...+...+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            47999999999999999999999999998889998888888888889999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      +|.++..++..+..|++++.+..                                               ......++|+
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~-----------------------------------------------~~~~~~~ip~  114 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQA-----------------------------------------------SPRDPENFPF  114 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-----------------------------------------------CCSSGGGSCE
T ss_pred             ecccchhhhhcchhhHHHHHHHh-----------------------------------------------ccccccCCCE
Confidence            99999999999998877664421                                               1122236899


Q ss_pred             EEeecccchhhccCCChHHHHHHHH-HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAE-RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+ +....++...++. ..++++++|||++|.|++++|++|++.
T Consensus       115 ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~  166 (184)
T d1vg8a_         115 VVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN  166 (184)
T ss_dssp             EEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence            99999999876 4566677777765 457899999999999999999999874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-32  Score=192.52  Aligned_cols=163  Identities=29%  Similarity=0.417  Sum_probs=133.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccccc-ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc-cccchhhhcCCcEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY-RAITSAYYRGAVGA   87 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-~~~~~~~~~~~~~~   87 (223)
                      ..+||+++|.+|||||||++++++...... ..++.+.+.....+.+++....+.+||+++.... ..+...+++++|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            479999999999999999999998766533 3355566777788888999999999998763221 22556788999999


Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCC
Q psy15625         88 LLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQN  167 (223)
Q Consensus        88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  167 (223)
                      ++|||++++.++..+..|+.++..                                                  .....+
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~--------------------------------------------------~~~~~~  111 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRR--------------------------------------------------ARQTED  111 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHT--------------------------------------------------SGGGTT
T ss_pred             eeeecccccchhhhhhhhhhhhhh--------------------------------------------------ccccCC
Confidence            999999999999999876665522                                                  112247


Q ss_pred             ceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        168 IVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       168 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +|+++|+||+|+...+.++.++.+.++..+++++++|||++|.|++++|+.|++.
T Consensus       112 ~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~  166 (172)
T d2g3ya1         112 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQ  166 (172)
T ss_dssp             SCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence            8999999999999888899999999999999999999999999999999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=2.9e-31  Score=190.68  Aligned_cols=160  Identities=31%  Similarity=0.473  Sum_probs=136.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      ..||+++|.+|||||||++++..+.++..+.++.+ +........++..+.+.+||++|+..+...+..++++++++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47899999999999999999999999888888875 44455666788999999999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      ||++++++++.+..|+...                                                  +... ..+.|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~--------------------------------------------------~~~~-~~~~~i  109 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGE--------------------------------------------------IQEF-CPNTKM  109 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHH--------------------------------------------------HHHH-CTTCEE
T ss_pred             eecccCCCHHHHHHHHHHH--------------------------------------------------Hhcc-CCcceE
Confidence            9999999999987544322                                                  2222 237899


Q ss_pred             EEeecccchhh------------ccCCChHHHHHHHHHcC-CeEEEeecCCCCC-HHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRH------------LRAVPADEAKTFAERNN-LSFIETSALDSTN-VETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~-i~~~~~~i~~~  222 (223)
                      ++|+||+|+..            .+.++.++...++.+.+ ..|++|||+++++ ++++|+.+++.
T Consensus       110 ilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~  175 (179)
T d1m7ba_         110 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA  175 (179)
T ss_dssp             EEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred             EEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence            99999999853            35688899999999887 4799999999984 99999999875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=180.99  Aligned_cols=158  Identities=22%  Similarity=0.355  Sum_probs=127.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      |.+||+++|.+|||||||++++.++.+... .++.+.. ....+.+++..+.+.+||++|+..+     .+++++|++++
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~~~-~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESEQ-YKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSCEE-EEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCcccee-EEEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            579999999999999999999999988554 3554444 4666778999999999999997643     47899999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||+++.++++.+..|++.+...                                                ......+.|
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~------------------------------------------------~~~~~~~~p  108 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSL------------------------------------------------RGEGRGGLA  108 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH------------------------------------------------CC--CCCCE
T ss_pred             EeecccchhhhhhHHHHHHHHHH------------------------------------------------hhcccCCcc
Confidence            99999999999999777665332                                                222234689


Q ss_pred             EEEeecccchh--hccCCChHHHHHHHHH-cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLR--HLRAVPADEAKTFAER-NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||.|+.  ..+.++.++.+.++.+ ++++|++|||+++.|++++|..+++.
T Consensus       109 i~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  164 (175)
T d2bmja1         109 LALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQK  164 (175)
T ss_dssp             EEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             EEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHH
Confidence            99999888874  3556778888888655 57899999999999999999998864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=2.2e-30  Score=183.57  Aligned_cols=157  Identities=22%  Similarity=0.369  Sum_probs=124.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|++|||||||+++|.++.+...+.+|.+.++..  +.  ...+.+.+||+||+..+...+..++..++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--ee--eeeEEEEEeeccccccccccccccccccchhhc
Confidence            36899999999999999999999999988887877655433  33  345789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      |||+++..++.....++..+.                                                  ......++|
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~p  106 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLL--------------------------------------------------DKPQLQGIP  106 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHH--------------------------------------------------TCGGGTTCC
T ss_pred             ccccccccccchhhhhhhhhh--------------------------------------------------hhhcccCCc
Confidence            999999999988876555442                                                  222335789


Q ss_pred             EEEeecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++|+||.|+.+..  ...++.+..     ...+++++++||++|+|++++|++|++-
T Consensus       107 i~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         107 VLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             EEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             EEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence            99999999986522  223322221     2335679999999999999999999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=4.2e-29  Score=178.86  Aligned_cols=160  Identities=23%  Similarity=0.364  Sum_probs=121.0

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      ...++.+||+++|++|||||||+++|.++.+.... ++.+.+  ...+..  ..+.+.+||++|+..+...+..+++.++
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~--~~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFN--IKSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTEE--EEEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeeee--EEEecc--CCeeEeEeeccccccchhHHHHHhhccc
Confidence            34456799999999999999999999998875433 333333  233333  4568899999999999999999999999


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      ++++|||.++..++..+..++..+                                                  ......
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~--------------------------------------------------~~~~~~  115 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTEL--------------------------------------------------LEEEKL  115 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHH--------------------------------------------------TTCGGG
T ss_pred             eeEEeeccccccchhhhhhhhhhh--------------------------------------------------hhhhcc
Confidence            999999999999998887555433                                                  122223


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.  ....+..+..     ...++++++|||++|+|++++|++|++.
T Consensus       116 ~~~pillv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         116 SCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             TTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CCCeEEEEEEecccccc--ccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            47899999999999752  2222322221     2235679999999999999999999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=1e-28  Score=175.00  Aligned_cols=155  Identities=20%  Similarity=0.405  Sum_probs=118.0

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||+++|.+..+. ...++.+...  ..  +....+.+.+||++|+..+...+..+++.+++++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~--~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE--EE--EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee--ee--ccccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            589999999999999999999988764 3445554333  23  334557899999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                      +|.++..++.....++...                                                  +......++|+
T Consensus        77 ~d~~d~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~p~  106 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSL--------------------------------------------------LVEERLAGATL  106 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHH--------------------------------------------------HTCGGGTTCEE
T ss_pred             eecccchhHHHHHHhhhhh--------------------------------------------------hhhcccCCCce
Confidence            9999999888876544322                                                  22233357899


Q ss_pred             EEeecccchhhccCCChHHHHHHHH-----HcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAE-----RNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.+..  ..++......     ..++++++|||++|+|++++|++|++.
T Consensus       107 iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~  161 (165)
T d1ksha_         107 LIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD  161 (165)
T ss_dssp             EEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEecccccccc--CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999997533  3333333221     224579999999999999999999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=1.1e-28  Score=177.52  Aligned_cols=159  Identities=21%  Similarity=0.386  Sum_probs=117.9

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcE
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVG   86 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   86 (223)
                      ..++.+||+++|.+|||||||++++....+.... ++.+.....    .....+.+.+||++|+..+...+..+++++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVET----LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-SSTTCCEEE----EEETTEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceEEEE----EeeCCEEEEEEecccccccchhHHhhhcccee
Confidence            3556899999999999999999999988775433 454443322    23345788999999999999999999999999


Q ss_pred             EEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCC
Q psy15625         87 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQ  166 (223)
Q Consensus        87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  166 (223)
                      +++|+|.++..++.....|+...                                                  +......
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~--------------------------------------------------~~~~~~~  117 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLM--------------------------------------------------LQEEELQ  117 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHH--------------------------------------------------TTSSTTS
T ss_pred             EEEEeeecccccchhHHHHHHHH--------------------------------------------------HHhhccC
Confidence            99999999999988887554433                                                  2223334


Q ss_pred             CceEEEeecccchhhccCCChHHHHHH-----HHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        167 NIVIMLVGNKSDLRHLRAVPADEAKTF-----AERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       167 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +.|+++|+||+|+.+  ....+++...     +...++++++|||++|+|++++|++|++.
T Consensus       118 ~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~  176 (182)
T d1moza_         118 DAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV  176 (182)
T ss_dssp             SCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHH
T ss_pred             CcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            789999999999964  2334443332     12345679999999999999999999864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=2.2e-29  Score=179.92  Aligned_cols=157  Identities=20%  Similarity=0.376  Sum_probs=118.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      .+.+||+++|.+|||||||++++.++...... ++.+...    .......+.+.+||+||+..+...+..+++++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            56799999999999999999999987764332 3333322    223344578999999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +|+|.++..++..+..|+...                                                  +........
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~--------------------------------------------------~~~~~~~~~  114 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRI--------------------------------------------------INDREMRDA  114 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHH--------------------------------------------------HTSGGGTTC
T ss_pred             EEEecccchhHHHHHHHHHHH--------------------------------------------------hhhcccccc
Confidence            999999999999887655433                                                  222233578


Q ss_pred             eEEEeecccchhhccCCChHHHHHH-----HHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTF-----AERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++++||+|+.+.  ....++...     +...++.+++|||++|+|++++|++|.+-
T Consensus       115 piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~  171 (173)
T d1e0sa_         115 IILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN  171 (173)
T ss_dssp             EEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             eeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHh
Confidence            99999999999752  233333222     12235679999999999999999999763

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.94  E-value=1.1e-27  Score=168.50  Aligned_cols=154  Identities=18%  Similarity=0.293  Sum_probs=118.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY   91 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   91 (223)
                      +||+++|++|||||||++++.++++.........     .....+...+.+.+||++|...+...+..+++.++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999999999999887655433321     12234556778999999999999999999999999999999


Q ss_pred             eCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE
Q psy15625         92 DIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM  171 (223)
Q Consensus        92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i  171 (223)
                      |..+..++..+..|+.++.                                                  ........|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~i~  105 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRML--------------------------------------------------AEDELRDAVLL  105 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHH--------------------------------------------------TCGGGTTCEEE
T ss_pred             EecChHHHHHHHHHHHHHH--------------------------------------------------HhhcccCceEE
Confidence            9999999888876555442                                                  22223468999


Q ss_pred             EeecccchhhccCCChHHHH-----HHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        172 LVGNKSDLRHLRAVPADEAK-----TFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       172 vv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++||.|+.+..  ..++..     .++...++++++|||++|+|++++|++|++-
T Consensus       106 ~v~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         106 VFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             EEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             EEeecccccccc--cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence            999999987522  222222     2333446789999999999999999999863

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=1.8e-24  Score=154.49  Aligned_cols=157  Identities=20%  Similarity=0.327  Sum_probs=112.9

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ++.+||+|+|.+|||||||++++.+.++.... ++.+....  .  .......+.+||+++.......+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE--E--IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSSCE--E--EEETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceeEE--E--EeecceEEEEeccccccccccchhhhhccceeee
Confidence            56799999999999999999999998775433 22222221  1  2223468899999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +++|.++..++.....+....                                                  .........
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~  117 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKM--------------------------------------------------LAHEDLRKA  117 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHH--------------------------------------------------HTSGGGTTC
T ss_pred             eecccccccchhhhhhhhhhh--------------------------------------------------hhcccccce
Confidence            999999999887776433322                                                  122223478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHH-----HHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFA-----ERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++|+||+|+....  ..++.....     ...++++++|||++|+|++++|++|.+.
T Consensus       118 p~iiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~  174 (177)
T d1zj6a1         118 GLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  174 (177)
T ss_dssp             EEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             EEEEEEEcccccccC--cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999986532  233333332     2235679999999999999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=1.2e-23  Score=150.41  Aligned_cols=155  Identities=23%  Similarity=0.210  Sum_probs=96.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchh--------h
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSA--------Y   80 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~--------~   80 (223)
                      +.-.|+|+|.+|||||||+|+|++........ +..+..........  ....+.+|||||..........        +
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeee--eeeeeeecccccccccccccchhcccccccc
Confidence            34479999999999999999999886543332 22222232222223  3357899999997544332221        2


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      ++.+|++++|+|.++                                                   +.+..+ ..+...+
T Consensus        82 ~~~ad~il~v~D~~~---------------------------------------------------~~~~~~-~~i~~~l  109 (178)
T d1wf3a1          82 LADVNAVVWVVDLRH---------------------------------------------------PPTPED-ELVARAL  109 (178)
T ss_dssp             TSSCSEEEEEEETTS---------------------------------------------------CCCHHH-HHHHHHH
T ss_pred             cccccceeeeechhh---------------------------------------------------hhcccc-cchhhhe
Confidence            344555555555544                                                   333222 1223333


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ... ..++|+++|+||+|+...   ..+..+.+....+ ..++++||+++.|+++++++|++.
T Consensus       110 ~~~-~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~  168 (178)
T d1wf3a1         110 KPL-VGKVPILLVGNKLDAAKY---PEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL  168 (178)
T ss_dssp             GGG-TTTSCEEEEEECGGGCSS---HHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             ecc-ccchhhhhhhcccccccC---HHHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHh
Confidence            332 236899999999998642   1223344444444 568999999999999999999874

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.1e-23  Score=146.84  Aligned_cols=152  Identities=19%  Similarity=0.262  Sum_probs=114.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      ||+++|++|||||||+++|.++.+.. ..++.+....    ..........+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999998753 3355443332    233344578999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                      .++...+.....+.....                                                  ......+.|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~i~i  106 (166)
T d2qtvb1          77 AADPERFDEARVELDALF--------------------------------------------------NIAELKDVPFVI  106 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHH--------------------------------------------------TCTTTTTCCEEE
T ss_pred             ccchhhhhhhhHHHHhhh--------------------------------------------------hhhccCCceEEE
Confidence            999988877765443331                                                  222234789999


Q ss_pred             eecccchhhccCCChHHHHHHH------------HHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTFA------------ERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ++||.|+..  .....+.....            ...++.+++|||++|+|++|+|++|.+
T Consensus       107 ~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         107 LGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             Eeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            999999864  23333333322            122456999999999999999999976

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.90  E-value=9.2e-24  Score=149.32  Aligned_cols=156  Identities=21%  Similarity=0.346  Sum_probs=115.5

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|.+|||||||+++++++.+.... ++.+...  ..  .....+.+.+||.+|...........+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNV--ET--VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEE--EE--EEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccceee--ee--eccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            4589999999999999999999999875433 3333222  22  23345688999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      ++|..+..+......+..                                                  ...........|
T Consensus        79 ~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~  108 (169)
T d1upta_          79 VVDSCDRDRIGISKSELV--------------------------------------------------AMLEEEELRKAI  108 (169)
T ss_dssp             EEETTCCTTHHHHHHHHH--------------------------------------------------HHHTCGGGTTCE
T ss_pred             hhhhhhcchhhhccchhh--------------------------------------------------hhhhhhccccce
Confidence            999998888777764322                                                  222223334689


Q ss_pred             EEEeecccchhhccCCChHHHH-H----HHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAVPADEAK-T----FAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++||.|+.+..  ...+.. .    ++...++++++|||++|+|++++|++|++.
T Consensus       109 i~iv~nk~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~  164 (169)
T d1upta_         109 LVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVET  164 (169)
T ss_dssp             EEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEEeeccccccc--cHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999997522  222222 2    233446789999999999999999999763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.8e-24  Score=150.01  Aligned_cols=158  Identities=21%  Similarity=0.224  Sum_probs=97.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccc-cccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      +||+++|.+|||||||+|+|++....... .+..+.+.....  +......+.+||++|..+.......           
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~-----------   68 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREH--IHIDGMPLHIIDTAGLREASDEVER-----------   68 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEE--EEETTEEEEEEECCCCSCCSSHHHH-----------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeee--eeccCceeeeccccccccccccchh-----------
Confidence            79999999999999999999988765332 233222222223  3333457889999996543221111           


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceE
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVI  170 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (223)
                               .......                       .....+|.+++++|+....+......|...+... ..++|+
T Consensus        69 ---------~~~~~~~-----------------------~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~i  115 (161)
T d2gj8a1          69 ---------IGIERAW-----------------------QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPI  115 (161)
T ss_dssp             ---------HHHHHHH-----------------------HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CTTCCE
T ss_pred             ---------HHHHHHH-----------------------HHHHhccccceeeccccccchhhhhhhhhhhhhc-ccccce
Confidence                     0000000                       0112345555555555554444444444444333 247899


Q ss_pred             EEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        171 MLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       171 ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      ++|+||+|+.......       ....+.+++++||+++.|+++++++|.+.
T Consensus       116 ilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         116 TVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             EEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             eeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            9999999987632211       12235689999999999999999999874

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5.5e-25  Score=159.47  Aligned_cols=164  Identities=17%  Similarity=0.202  Sum_probs=114.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|..|||||||+++|....++..+     .    .+..++.....+.+||++|+..+..++..++++++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~-----~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTG-----I----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCS-----E----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcc-----E----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            3689999999999999999999887664332     2    122344456789999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      ++|.++..++.....+...+.                                        +....|...+......+.|
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~----------------------------------------e~~~~~~~i~~~~~~~~~~  111 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMH----------------------------------------ESMKLFDSICNNKWFTDTS  111 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHH----------------------------------------HHHHHHHHHHTCGGGTTSE
T ss_pred             EEeecccchHHHHhhhhHHHH----------------------------------------HHHHHHHHHhcccccCCCC
Confidence            999998877643332211111                                        1112445555555566899


Q ss_pred             EEEeecccchhhccC---------------CChHHHH-----HHHHH------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRA---------------VPADEAK-----TFAER------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~---------------~~~~~~~-----~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++||+|+...+.               ....+..     .+...      .++.++++||+++.||+++|+.+.+.
T Consensus       112 ~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~  190 (195)
T d1svsa1         112 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV  190 (195)
T ss_dssp             EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHH
Confidence            999999999754211               1111111     11111      13447789999999999999988653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=9.7e-24  Score=153.38  Aligned_cols=167  Identities=18%  Similarity=0.162  Sum_probs=118.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   89 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   89 (223)
                      +.+||+++|..|||||||++++....+.  +.||+|.+...    +....+.+.+||++|+..+...+..++++++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeE
Confidence            3689999999999999999999988763  55777765433    44456788999999999999999999999999999


Q ss_pred             EEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCce
Q psy15625         90 VYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIV  169 (223)
Q Consensus        90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p  169 (223)
                      ++|.++...+.                                        +.+.......+....|...+......+.|
T Consensus        75 ~~~~~~~~~~~----------------------------------------~~~~~~~~~~e~~~~~~~~l~~~~~~~~~  114 (200)
T d2bcjq2          75 LVALSEYDQVL----------------------------------------VESDNENRMEESKALFRTIITYPWFQNSS  114 (200)
T ss_dssp             EEEGGGGGCBC----------------------------------------SSCTTSBHHHHHHHHHHHHHHCGGGSSSE
T ss_pred             eeeccchhhhh----------------------------------------hhhccccchHHHHHHHHHHHhhhhccCcc
Confidence            99998754321                                        11111112222233555556655566899


Q ss_pred             EEEeecccchhhccCC----------------ChHHHHHHHH----H------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRAV----------------PADEAKTFAE----R------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~~----------------~~~~~~~~~~----~------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++||+|+...+..                .......+..    .      ..+.++++||+++.|++++|+.|.+.
T Consensus       115 ~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~  193 (200)
T d2bcjq2         115 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT  193 (200)
T ss_dssp             EEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHH
Confidence            9999999998642221                1122222211    1      12347899999999999999888653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=3.7e-23  Score=148.09  Aligned_cols=157  Identities=17%  Similarity=0.113  Sum_probs=101.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc----cc---chhhhcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR----AI---TSAYYRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~~---~~~~~~~~~   85 (223)
                      +|+++|.+|||||||+|+|++...........+........ .......+.+|||||.....    ..   ....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            48999999999999999999887665554444444433333 33344478999999953321    11   123467778


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      .+++++|..... ......+.                                                .++...... .
T Consensus        82 ~~~~~~d~~~~~-~~~~~~~~------------------------------------------------~~~~~~~~~-~  111 (180)
T d1udxa2          82 VLLYVLDAADEP-LKTLETLR------------------------------------------------KEVGAYDPA-L  111 (180)
T ss_dssp             EEEEEEETTSCH-HHHHHHHH------------------------------------------------HHHHHHCHH-H
T ss_pred             hhhhhccccccc-ccchhhhh------------------------------------------------hhhhccccc-c
Confidence            888888875432 12222221                                                111111111 1


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+...+.  .++..+...+.+.+++++||++|+|++++++.|.+.
T Consensus       112 ~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~  166 (180)
T d1udxa2         112 LRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHAL  166 (180)
T ss_dssp             HHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            2579999999999865322  234445555678899999999999999999998653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.89  E-value=3.2e-22  Score=143.41  Aligned_cols=157  Identities=19%  Similarity=0.278  Sum_probs=109.1

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   88 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   88 (223)
                      ++..||+++|.+|||||||+++|++..+.... ++.+.+..  .+..++  ..+.+||+.+...+...+..+++..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-ccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            45789999999999999999999998875443 44333332  233333  46789999999999999999999999999


Q ss_pred             EEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCc
Q psy15625         89 LVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI  168 (223)
Q Consensus        89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  168 (223)
                      +++|.++.........+....                                                  .......+.
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~  115 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSL--------------------------------------------------MTDETIANV  115 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHH--------------------------------------------------HTCGGGTTS
T ss_pred             eeeeccCccchHHHHHHHHHh--------------------------------------------------hcccccCCC
Confidence            999999988877665322211                                                  222223478


Q ss_pred             eEEEeecccchhhccCCChHHHHHHHHH-----------------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        169 VIMLVGNKSDLRHLRAVPADEAKTFAER-----------------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       169 p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      |+++++||.|++.  .....++......                 .++++++|||++|+|++|+|+||++.
T Consensus       116 ~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         116 PILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            9999999999865  3344444443321                 13468999999999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=5.3e-23  Score=147.12  Aligned_cols=160  Identities=19%  Similarity=0.110  Sum_probs=99.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccc-----eeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-----GVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYR   82 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   82 (223)
                      +-+.++|+++|.+|+|||||+|+|++...........     +.+.......+......+.++|++|+.++.......+.
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence            3467899999999999999999999754322221111     11111111112223456889999998877777777788


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhh
Q psy15625         83 GAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRD  162 (223)
Q Consensus        83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (223)
                      .+|++++++|..+....+...-                                                    ...+..
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~~----------------------------------------------------~~~~~~  109 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGEH----------------------------------------------------MLILDH  109 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHH----------------------------------------------------HHHHHH
T ss_pred             hccccccccccccccchhhhhh----------------------------------------------------hhhhhh
Confidence            8888888888877544322210                                                    111111


Q ss_pred             ccCCCceEEEeecccchhhccCC--ChHHHHHHHHH----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAER----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                         .++|+++|+||+|+.+....  ..+..+.+...    .+.+++++||++|+|++++++.|.+.
T Consensus       110 ---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~  172 (179)
T d1wb1a4         110 ---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITT  172 (179)
T ss_dssp             ---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhc
Confidence               37899999999998642211  11122222222    24579999999999999999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=6.3e-23  Score=147.51  Aligned_cols=159  Identities=16%  Similarity=0.122  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc----cch---hhhcCCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA----ITS---AYYRGAV   85 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~~~---~~~~~~~   85 (223)
                      +|+|+|++|||||||+|+|++........+..+.+.......+.+ ...+.+|||||......    +..   ..+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            699999999999999999998876655555544444444443332 23678999999532211    111   1234566


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      .++++++............+...                                              ...........
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~  115 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTI----------------------------------------------NQELSEYNLRL  115 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHH----------------------------------------------HHHHHHSCSST
T ss_pred             hhhheeeecccccchhhhhhhhh----------------------------------------------hhccchhhhhc
Confidence            77666665544332222111110                                              11111122222


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHHc--CCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAERN--NLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.    .+..+.+....  +.+++.+||++|.|++++++.|.+.
T Consensus       116 ~~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~  170 (185)
T d1lnza2         116 TERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQ  170 (185)
T ss_dssp             TTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred             cCCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999998652    23334444433  6789999999999999999998753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.6e-22  Score=142.03  Aligned_cols=148  Identities=24%  Similarity=0.293  Sum_probs=90.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccc-cccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-c-c-------chhhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-A-I-------TSAYY   81 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~-~-------~~~~~   81 (223)
                      +||+++|.+|||||||+|+|++....... .+..+..........  ....+.+||+||..... . .       ....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI--RGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE--TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEe--CCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999987654332 222222222222323  34578899999943211 0 0       01123


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhh
Q psy15625         82 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELR  161 (223)
Q Consensus        82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (223)
                      ..+|++++|+|.+++.......                                                   -+ ..+ 
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~---------------------------------------------------~~-~~~-  105 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRK---------------------------------------------------IL-ERI-  105 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH---------------------------------------------------HH-HHH-
T ss_pred             HhCCEEEEEEeCCCCcchhhhh---------------------------------------------------hh-hhc-
Confidence            4455555555555544332221                                                   11 111 


Q ss_pred             hccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        162 DHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       162 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                          ...|+++++||+|+.+.  ...++.... ...+.+++++||++|.|++++++.|.+
T Consensus       106 ----~~~~~i~~~~k~d~~~~--~~~~~~~~~-~~~~~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         106 ----KNKRYLVVINKVDVVEK--INEEEIKNK-LGTDRHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             ----TTSSEEEEEEECSSCCC--CCHHHHHHH-HTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             ----ccccceeeeeeccccch--hhhHHHHHH-hCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence                25688999999998752  233333222 234567999999999999999999976

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=3.7e-22  Score=141.65  Aligned_cols=160  Identities=22%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      +|+++|.+|||||||+++|++......... .+.+.......+......+.+||++|........               
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~---------------   65 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDE-EGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI---------------   65 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGC---------------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceeccc-Cceeeccccccccccccccccccccceeeeeccc---------------
Confidence            699999999999999999998765432211 1122222222244445578999999943221100               


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEE
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIML  172 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iv  172 (223)
                          ........++.                       ....+|.++++.+.+.+....+ ..+...+..   .++|+++
T Consensus        66 ----~~~~~~~~~~~-----------------------~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~---~~~pvii  114 (171)
T d1mkya1          66 ----ISQKMKEVTLN-----------------------MIREADLVLFVVDGKRGITKED-ESLADFLRK---STVDTIL  114 (171)
T ss_dssp             ----CCHHHHHHHHH-----------------------HHTTCSEEEEEEETTTCCCHHH-HHHHHHHHH---HTCCEEE
T ss_pred             ----ccccccccccc-----------------------ccccCcEEEEeecccccccccc-ccccccccc---ccccccc
Confidence                00111111111                       1123555555555555444433 123333333   2679999


Q ss_pred             eecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        173 VGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       173 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      |+||+|+....  ..+....+.+....+++++||++|.|+++++++|.+
T Consensus       115 v~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~  161 (171)
T d1mkya1         115 VANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIK  161 (171)
T ss_dssp             EEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             cchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHH
Confidence            99999986521  122222333334456899999999999999999976

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=1.6e-21  Score=140.12  Aligned_cols=172  Identities=23%  Similarity=0.214  Sum_probs=96.0

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCccccccc-ccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCC
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGA   84 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   84 (223)
                      .+....+||+|+|.+|||||||+|+|++........ +..+.......+..++  ..+.++|+||.......+...... 
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~-   79 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEK-   79 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CC-
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCcccccccccccccc-
Confidence            344457999999999999999999999876533222 2222222222233333  467889999964433222211000 


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhcc
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHA  164 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  164 (223)
                                 .... ..   ..                       ....+|.+++++|++.+..... ..+...+..  
T Consensus        80 -----------~~~~-~~---~~-----------------------~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~--  118 (186)
T d1mkya2          80 -----------YSNY-RV---VD-----------------------SIEKADVVVIVLDATQGITRQD-QRMAGLMER--  118 (186)
T ss_dssp             -----------SCCH-HH---HH-----------------------HHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--
T ss_pred             -----------chhH-HH---HH-----------------------HHhcCCEEEEeecccccchhhH-HHHHHHHHH--
Confidence                       0000 00   00                       1123566666666665544433 122222322  


Q ss_pred             CCCceEEEeecccchhhccCCChHHHHHHHHH-----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        165 DQNIVIMLVGNKSDLRHLRAVPADEAKTFAER-----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       165 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                       .+.|+++|+||+|+.........+......+     ...+++++||++|.|++++++.|.++
T Consensus       119 -~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~  180 (186)
T d1mkya2         119 -RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA  180 (186)
T ss_dssp             -TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             -cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence             3789999999999865333333443333332     13579999999999999999998653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.5e-22  Score=147.21  Aligned_cols=164  Identities=18%  Similarity=0.228  Sum_probs=103.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   90 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   90 (223)
                      .+||+++|.+|||||||++++.   +...+.||+|....  .  ++.....+.+||++|+..+...+..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~--~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--D--FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--E--EEETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--E--EeeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            4899999999999999999993   55666788775443  2  344567889999999999999999999999999999


Q ss_pred             EeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH-HHHHHhhhccCCCce
Q psy15625         91 YDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIV  169 (223)
Q Consensus        91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~p  169 (223)
                      ++.++...+.....|                                         ........ .|...+......++|
T Consensus        75 ~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~i~~~~~~~~~p  113 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQ-----------------------------------------TNRLTESLNIFETIVNNRVFSNVS  113 (200)
T ss_dssp             EETTCTTCEETTEEE-----------------------------------------EEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             EEcCCcceeeeeccc-----------------------------------------chhhhHHHHHHHHHhhChhhcCce
Confidence            999875543111000                                         00000001 222223444456899


Q ss_pred             EEEeecccchhhccC----------------CChHHHHHHHHH-----------cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        170 IMLVGNKSDLRHLRA----------------VPADEAKTFAER-----------NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       170 ~ivv~nK~Dl~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      +++++||+|+.+.+.                ...+...++...           ..+-++++||+++.||+++|+.+.+.
T Consensus       114 iilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~  193 (200)
T d1zcba2         114 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT  193 (200)
T ss_dssp             EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             EEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence            999999999854211                111222222221           12335679999999999999987653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.4e-20  Score=137.41  Aligned_cols=84  Identities=19%  Similarity=0.283  Sum_probs=65.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc-ccchhhhcCCcEEEEEE
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR-AITSAYYRGAVGALLVY   91 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~~i~v~   91 (223)
                      +|+++|++|||||||+++|++..+.... ++.+.+.....+ .....+.+.+||++|+..+. ..+..+++.++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876544 554444433322 24556789999999988775 45677889999999999


Q ss_pred             eCCCccc
Q psy15625         92 DIAKHLT   98 (223)
Q Consensus        92 d~~~~~~   98 (223)
                      |.++..+
T Consensus        80 D~~d~~~   86 (207)
T d2fh5b1          80 DSAAFQR   86 (207)
T ss_dssp             ETTTHHH
T ss_pred             Ecccccc
Confidence            9998655

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=3e-21  Score=142.84  Aligned_cols=86  Identities=20%  Similarity=0.232  Sum_probs=58.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEE----------------EEcCeEEEEEEEeCCCCccccccc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSI----------------QVDQKTIKAQIWDTAGQERYRAIT   77 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~D~~G~~~~~~~~   77 (223)
                      |+|+|.+++|||||+++|++...........+........                .+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998764332221111111111111                123344578999999999988888


Q ss_pred             hhhhcCCcEEEEEEeCCCcccH
Q psy15625         78 SAYYRGAVGALLVYDIAKHLTY   99 (223)
Q Consensus        78 ~~~~~~~~~~i~v~d~~~~~~~   99 (223)
                      ...+..+|++++|+|..+.-..
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~  109 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKP  109 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCH
T ss_pred             hhcccccceEEEEEecccCccc
Confidence            8888889999999998765443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=3.8e-21  Score=137.84  Aligned_cols=162  Identities=21%  Similarity=0.226  Sum_probs=86.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEe
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYD   92 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d   92 (223)
                      .|+++|.||||||||+|+|++..+.....+..+.+  ...+...    .+.+||+||..........             
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~----~~~ivDtpG~~~~~~~~~~-------------   62 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKE-------------   62 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHH-------------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--ccccccc----cceecccCCceeccccccc-------------
Confidence            58999999999999999999987654444433322  2222222    3578999995322111100             


Q ss_pred             CCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhh----------HHHHHHhhh
Q psy15625         93 IAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENV----------ERWLRELRD  162 (223)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----------~~~~~~~~~  162 (223)
                           ....+.   ..+..               ......+.+|++++++|++........          ...+..+. 
T Consensus        63 -----~~~~~~---~~~~~---------------~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~-  118 (184)
T d2cxxa1          63 -----VQERIK---DEIVH---------------FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR-  118 (184)
T ss_dssp             -----HHHHHH---HHHHH---------------HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH-
T ss_pred             -----cccccc---hhhhh---------------hhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH-
Confidence                 000000   00000               000111234444555544322111000          01122222 


Q ss_pred             ccCCCceEEEeecccchhhccCCChHHHHHHHHHcC-------CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        163 HADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN-------LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       163 ~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                        ..++|+++|+||+|+.+..   ......+....+       ..++++||++|+|++++++.|.+.
T Consensus       119 --~~~~p~iiv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~  180 (184)
T d2cxxa1         119 --ELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV  180 (184)
T ss_dssp             --HTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred             --HcCCCEEEEEeeeehhhhH---HHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence              2478999999999975421   112222222222       248899999999999999999864

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=2.8e-20  Score=134.61  Aligned_cols=171  Identities=16%  Similarity=0.137  Sum_probs=92.2

Q ss_pred             cccceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCc
Q psy15625          6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAV   85 (223)
Q Consensus         6 ~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~   85 (223)
                      .+.+...+|+|+|.+|||||||+|+|++...........+.+..........   .+.+.|++|.........       
T Consensus        18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~-------   87 (195)
T d1svia_          18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKS-------   87 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHH-------
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeecccccccc-------
Confidence            3344456899999999999999999998654222222222222222222222   334567666322111110       


Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         86 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                                  .............+                   ....++++++++|++.+.+..+. .+++.+..   
T Consensus        88 ------------~~~~~~~~~~~~~~-------------------~~~~~~~vi~viD~~~~~~~~~~-~~~~~l~~---  132 (195)
T d1svia_          88 ------------EREAWGRMIETYIT-------------------TREELKAVVQIVDLRHAPSNDDV-QMYEFLKY---  132 (195)
T ss_dssp             ------------HHHHHHHHHHHHHH-------------------HCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH---
T ss_pred             ------------ccchhhhHHhhhhc-------------------cccchhhhhhhhhcccccccccc-cccccccc---
Confidence                        01111111111111                   11246677777777766554432 33333433   


Q ss_pred             CCceEEEeecccchhhccCCChHHHHHHHHH----cCCeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        166 QNIVIMLVGNKSDLRHLRAVPADEAKTFAER----NNLSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .++|+++|+||+|+.+.... .+..+.+...    ...+++++||+++.|+++++++|.+.
T Consensus       133 ~~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~  192 (195)
T d1svia_         133 YGIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM  192 (195)
T ss_dssp             TTCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            36899999999998543221 1222222222    34579999999999999999998764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=8.6e-21  Score=139.85  Aligned_cols=82  Identities=18%  Similarity=0.272  Sum_probs=67.5

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhhhcCCcEE
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGA   87 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~   87 (223)
                      ++..+||+++|..|||||||++++..+.+    .||.|...  ..+.+  ..+.+.+||++|+..++..+..++++++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~--~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQV--DKVNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEE--TTEEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEE--CcEEEEEEecCccceeccchhhhcccccce
Confidence            46689999999999999999999976543    35665433  33334  457889999999999999999999999999


Q ss_pred             EEEEeCCCcc
Q psy15625         88 LLVYDIAKHL   97 (223)
Q Consensus        88 i~v~d~~~~~   97 (223)
                      ++++|.++..
T Consensus        75 i~v~d~s~~~   84 (221)
T d1azta2          75 IFVVASSSYN   84 (221)
T ss_dssp             EEEEETTGGG
T ss_pred             EEEEEccccc
Confidence            9999998754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.79  E-value=1.4e-19  Score=130.25  Aligned_cols=159  Identities=18%  Similarity=0.112  Sum_probs=105.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcc--------------cccccccceeeeEEEEEEEcCeEEEEEEEeCCCCcccc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEF--------------NLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYR   74 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~   74 (223)
                      +|.++|+++|..++|||||+++|++...              ........+++.......+.+....+.++|+||+.+|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            3679999999999999999999975210              00111233455555556666667789999999998887


Q ss_pred             ccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhH
Q psy15625         75 AITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVE  154 (223)
Q Consensus        75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  154 (223)
                      .......+.+|++++|+|..+...-+.-+                                                   
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~QT~~---------------------------------------------------  109 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQTRE---------------------------------------------------  109 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHHH---------------------------------------------------
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchhHHH---------------------------------------------------
Confidence            76667778888888888887654332221                                                   


Q ss_pred             HHHHHhhhccCCCceEEEeecccchhhccCC---ChHHHHHHHHHcC-----CeEEEeecCCC----------CCHHHHH
Q psy15625        155 RWLRELRDHADQNIVIMLVGNKSDLRHLRAV---PADEAKTFAERNN-----LSFIETSALDS----------TNVETAF  216 (223)
Q Consensus       155 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~----------~~i~~~~  216 (223)
                       .+......  ...|+|+++||+|+..+...   ...+++.+....+     ++++++||++|          +++.+++
T Consensus       110 -~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Ll  186 (196)
T d1d2ea3         110 -HLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLL  186 (196)
T ss_dssp             -HHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHH
T ss_pred             -HHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHH
Confidence             11111121  13578999999998542211   1123444444443     56999999998          5889999


Q ss_pred             HHHHh
Q psy15625        217 QNILT  221 (223)
Q Consensus       217 ~~i~~  221 (223)
                      +.|.+
T Consensus       187 dai~~  191 (196)
T d1d2ea3         187 DAVDT  191 (196)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.79  E-value=9.6e-19  Score=126.35  Aligned_cols=161  Identities=21%  Similarity=0.205  Sum_probs=100.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccccccc---ccce--eeeEEEEEE-------------------EcCeEEEEEE
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK---STIG--VEFATRSIQ-------------------VDQKTIKAQI   64 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~---~~~~--~~~~~~~~~-------------------~~~~~~~~~~   64 (223)
                      .+.++|+++|..++|||||+++|++........   ...+  ..+......                   .......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            567899999999999999999998743221111   1111  111111110                   0112346899


Q ss_pred             EeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeec
Q psy15625         65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDI  144 (223)
Q Consensus        65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  144 (223)
                      +|+||+..|.......+..+|++++++|.............                                       
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~---------------------------------------  123 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREH---------------------------------------  123 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHH---------------------------------------
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHH---------------------------------------
Confidence            99999988887777778889999999998775422222111                                       


Q ss_pred             ccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHc---CCeEEEeecCCCCCHHHHHHHH
Q psy15625        145 AKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERN---NLSFIETSALDSTNVETAFQNI  219 (223)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i  219 (223)
                                  +..+...  ...++++++||+|+.+....  ..++...+....   .++++++||++|.|++++++.|
T Consensus       124 ------------~~~~~~~--~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I  189 (195)
T d1kk1a3         124 ------------LMALQII--GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAI  189 (195)
T ss_dssp             ------------HHHHHHH--TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHH
T ss_pred             ------------HHHHHHh--cCccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHH
Confidence                        1111111  12457889999998652211  122333333333   3579999999999999999998


Q ss_pred             Hhh
Q psy15625        220 LTA  222 (223)
Q Consensus       220 ~~~  222 (223)
                      .+.
T Consensus       190 ~~~  192 (195)
T d1kk1a3         190 EDF  192 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=2.9e-18  Score=124.74  Aligned_cols=163  Identities=19%  Similarity=0.201  Sum_probs=98.2

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhCccccccc---ccceee--eEEEEEEE------------------------cC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK---STIGVE--FATRSIQV------------------------DQ   57 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~---~~~~~~--~~~~~~~~------------------------~~   57 (223)
                      ...|.++|+++|..++|||||+++|++........   .....+  ........                        ..
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            34567999999999999999999998632211100   000000  00000000                        01


Q ss_pred             eEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccce
Q psy15625         58 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVG  137 (223)
Q Consensus        58 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
                      ....+.+.|+||+.+|.......+..+|.+++|+|....-.......                                 
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e---------------------------------  130 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE---------------------------------  130 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHH---------------------------------
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHH---------------------------------
Confidence            22368899999998888777777888999999998877532111110                                 


Q ss_pred             eEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCC--ChHHHHHHHHHc---CCeEEEeecCCCCCH
Q psy15625        138 ALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAERN---NLSFIETSALDSTNV  212 (223)
Q Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~i  212 (223)
                                        .+......  .-.|++|++||+|+.+....  ...+...+....   +++++++||++|.|+
T Consensus       131 ------------------~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI  190 (205)
T d2qn6a3         131 ------------------HFVALGII--GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINI  190 (205)
T ss_dssp             ------------------HHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSH
T ss_pred             ------------------HHHHHHHc--CCceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCCh
Confidence                              01111111  12488999999999652211  111222222222   367999999999999


Q ss_pred             HHHHHHHHhh
Q psy15625        213 ETAFQNILTA  222 (223)
Q Consensus       213 ~~~~~~i~~~  222 (223)
                      +++++.|.+.
T Consensus       191 ~~L~e~i~~~  200 (205)
T d2qn6a3         191 DSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.8e-18  Score=122.09  Aligned_cols=156  Identities=21%  Similarity=0.224  Sum_probs=90.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccc---------cchhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRA---------ITSAY   80 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~~~~~   80 (223)
                      +.-.|+|+|.+|||||||+|+|++...........+............. ..+..+|++|......         .....
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-YQAIYVDTPGLHMEEKRAINRLMNKAASSS   82 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC-ceeEeecCCCceecchhhhhhhhhhccccc
Confidence            3456999999999999999999998766554443333333333322222 2556788888432111         11111


Q ss_pred             hcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         81 YRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      ...++.++++.|..+...                                                   ..  ..+...+
T Consensus        83 ~~~~~~~l~~~d~~~~~~---------------------------------------------------~~--~~~~~~l  109 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTP---------------------------------------------------DD--EMVLNKL  109 (179)
T ss_dssp             CCCEEEEEEEEETTCCCH---------------------------------------------------HH--HHHHHHH
T ss_pred             hhhcceeEEEEecCccch---------------------------------------------------hH--HHHHHHh
Confidence            223334444444332221                                                   11  1112222


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHHHcC-CeEEEeecCCCCCHHHHHHHHHhh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNN-LSFIETSALDSTNVETAFQNILTA  222 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  222 (223)
                      .   ....|.++++||+|....+.......+.+..+.+ .+++++||++|+|++++++.|.+.
T Consensus       110 ~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~  169 (179)
T d1egaa1         110 R---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKH  169 (179)
T ss_dssp             H---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTT
T ss_pred             h---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHh
Confidence            2   2356889999999976532222334444444555 579999999999999999999764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=4.8e-18  Score=123.19  Aligned_cols=93  Identities=18%  Similarity=0.145  Sum_probs=64.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccc------c------c---cccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL------E------S---KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~------~------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      +|.++|+++|..++|||||+++|+...-..      .      .   ....+++.......+.+....+.++||||+.+|
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence            367999999999999999999997421000      0      0   001134444444455666678899999999988


Q ss_pred             cccchhhhcCCcEEEEEEeCCCcccHHH
Q psy15625         74 RAITSAYYRGAVGALLVYDIAKHLTYEN  101 (223)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~  101 (223)
                      ........+.+|++++|+|..+....+.
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt  108 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQT  108 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHH
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHH
Confidence            8777777788888888888776555433

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=6.8e-18  Score=120.72  Aligned_cols=38  Identities=26%  Similarity=0.268  Sum_probs=29.3

Q ss_pred             CCccccceeEEEEEEcCCCCcHHHHHHHHhhCcccccc
Q psy15625          3 TREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES   40 (223)
Q Consensus         3 ~~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~   40 (223)
                      +++.+.+..++|+++|.+|||||||+|+|++.......
T Consensus         8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~   45 (188)
T d1puia_           8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLART   45 (188)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC------
T ss_pred             hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEee
Confidence            56677888999999999999999999999987755444

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.73  E-value=2.8e-17  Score=120.35  Aligned_cols=155  Identities=21%  Similarity=0.213  Sum_probs=98.0

Q ss_pred             CccccceeEEEEEEcCCCCcHHHHHHHHhhCcccc-------------------------------cccccceeeeEEEE
Q psy15625          4 REDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-------------------------------ESKSTIGVEFATRS   52 (223)
Q Consensus         4 ~~~~~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~   52 (223)
                      .+.+.+..+||+++|..++|||||+++|+...-..                               ......+.+.....
T Consensus         2 ~~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~   81 (222)
T d1zunb3           2 GQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAY   81 (222)
T ss_dssp             CSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEE
T ss_pred             cccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeE
Confidence            34566678999999999999999999996421100                               00011122222333


Q ss_pred             EEEcCeEEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccc
Q psy15625         53 IQVDQKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYY  132 (223)
Q Consensus        53 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (223)
                      ..+......+.++|+||+..|-.........+|++++|+|......-+..+-                            
T Consensus        82 ~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~----------------------------  133 (222)
T d1zunb3          82 RYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH----------------------------  133 (222)
T ss_dssp             EEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH----------------------------
T ss_pred             EEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH----------------------------
Confidence            3344455678999999999998888888889999999998876544332221                            


Q ss_pred             cccceeEEEeecccccchhhhHHHHHHhhhccCCCc-eEEEeecccchhhccCC----ChHHHHHHHHHcC-----CeEE
Q psy15625        133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNI-VIMLVGNKSDLRHLRAV----PADEAKTFAERNN-----LSFI  202 (223)
Q Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~~~----~~~~~~~~~~~~~-----~~~~  202 (223)
                                              +.....   .++ .+++++||+|+.+..+.    ..+++..+....+     ++++
T Consensus       134 ------------------------~~~~~~---~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~I  186 (222)
T d1zunb3         134 ------------------------SYIASL---LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFV  186 (222)
T ss_dssp             ------------------------HHHHHH---TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEE
T ss_pred             ------------------------HHHHHH---cCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEE
Confidence                                    111111   143 47899999999752211    1123344444443     3589


Q ss_pred             EeecCCCCCHH
Q psy15625        203 ETSALDSTNVE  213 (223)
Q Consensus       203 ~~Sa~~~~~i~  213 (223)
                      ++||++|.|+.
T Consensus       187 PiSA~~G~ni~  197 (222)
T d1zunb3         187 PMSALKGDNVV  197 (222)
T ss_dssp             ECCTTTCTTTS
T ss_pred             EEEcccCccCC
Confidence            99999999883

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=1.5e-16  Score=119.40  Aligned_cols=96  Identities=16%  Similarity=0.215  Sum_probs=70.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcccccc----------------cccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      +..+|+++|+.++|||||+.+|+...-....                ....++++......+.++...++++||||+.+|
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence            4557999999999999999999642111000                011122233334445566678999999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCCcccHHHHHHH
Q psy15625         74 RAITSAYYRGAVGALLVYDIAKHLTYENVERW  105 (223)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  105 (223)
                      ..-....++.+|++++|+|..+.-..+....|
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w  116 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW  116 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHH
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHH
Confidence            99999999999999999999998887777655

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.7e-17  Score=120.88  Aligned_cols=118  Identities=19%  Similarity=0.246  Sum_probs=79.4

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccccccchhh----hcCCcE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERYRAITSAY----YRGAVG   86 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~----~~~~~~   86 (223)
                      ..+|+|+|++|||||||+|+|+++++.+.    .+.+..  ...+......+.+||+||+..+......+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~--~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEP--LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSC--EEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecce--EEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            35899999999999999999999876432    222222  22244455578999999988765554443    345577


Q ss_pred             EEEEEeCCC-cccHHHHHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625         87 ALLVYDIAK-HLTYENVERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus        87 ~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      +++++|..+ ..++.....|+...                                               ...+.....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~-----------------------------------------------~~~~~~~~~  109 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDI-----------------------------------------------LSITESSCE  109 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHH-----------------------------------------------HHHHHHHST
T ss_pred             cceEEEEecccccHHHHHHHHHHH-----------------------------------------------HHHHHHHHh
Confidence            777887664 44566665554422                                               233334444


Q ss_pred             CCceEEEeecccchhh
Q psy15625        166 QNIVIMLVGNKSDLRH  181 (223)
Q Consensus       166 ~~~p~ivv~nK~Dl~~  181 (223)
                      .++|+++|+||+|+.+
T Consensus       110 ~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_         110 NGIDILIACNKSELFT  125 (209)
T ss_dssp             TCCCEEEEEECTTSTT
T ss_pred             ccCCeEEEEEeecccc
Confidence            6899999999999865

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.64  E-value=2.4e-15  Score=112.47  Aligned_cols=93  Identities=15%  Similarity=0.156  Sum_probs=67.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccc--------c----------ccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNL--------E----------SKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY   73 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~   73 (223)
                      .+|+++|+.++|||||+.+|+...-..        .          .....++..  ....+.++...++++||||+.+|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~--~~~~~~~~~~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRT--GVAPLLFRGHRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSC--EEEEEEETTEEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEe--ecccccccccceeEEccCchhhh
Confidence            469999999999999999996321100        0          011122232  23334445567899999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCCcccHHHHHHHH
Q psy15625         74 RAITSAYYRGAVGALLVYDIAKHLTYENVERWL  106 (223)
Q Consensus        74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~  106 (223)
                      ..-....++.+|++++|+|..+.-.......|.
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~  113 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAWT  113 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHHH
Confidence            999999999999999999999877766666554

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.60  E-value=6.4e-15  Score=113.32  Aligned_cols=187  Identities=16%  Similarity=0.061  Sum_probs=111.7

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCCccc----cccchhhhcCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQERY----RAITSAYYRGA   84 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----~~~~~~~~~~~   84 (223)
                      ...++|+|+|+||||||||+++|......                  .+..+-+.-.|.......    ++..++.-...
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~------------------~g~~vaViavDpss~~~gg~llgdr~rm~~~~~  110 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTA------------------AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAI  110 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHH------------------TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGG
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhh------------------cCCceeeeecccccHHHHhccccchhhHHHHhc
Confidence            45799999999999999999999864221                  112223344454332111    11111111122


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHH---hc-CCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         85 VGALLVYDIAKHLTYENVERWLRELRD---HA-DQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      +..+++.+.........+.....+...   .. -+.+.++.++...........+|..+++..+..+...+..+..+-.+
T Consensus       111 ~~~~~ir~~~~~~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~  190 (323)
T d2qm8a1         111 DRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFEL  190 (323)
T ss_dssp             CTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHH
T ss_pred             ccceeeccccccccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEeeccchhhhhhhhhhHhhh
Confidence            333556666666666666544444333   22 23444566777777888888999999999999998777766555444


Q ss_pred             hhccCCCceEEEeecccchhhccCCChHHHHHHHH----------HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAE----------RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ..        ++|+||+|+.+...........+..          .+..+++.+||+++.|++++++.|.+
T Consensus       191 aD--------i~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~  253 (323)
T d2qm8a1         191 AD--------MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED  253 (323)
T ss_dssp             CS--------EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             hh--------eeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHH
Confidence            33        8999999986522211111111111          13457999999999999999999865

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.60  E-value=1.2e-15  Score=113.20  Aligned_cols=89  Identities=16%  Similarity=0.107  Sum_probs=48.9

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccc-----------------------------cccccceeeeEEEEEEEcCe
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------------------ESKSTIGVEFATRSIQVDQK   58 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   58 (223)
                      ..+.++|+++|..++|||||+.+|+...-..                             ......+.+.......+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            3457899999999999999999995311000                             00011112222222233444


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      ...+.+.|+||+..|..........+|++++|+|....
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G  138 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  138 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCC
Confidence            56789999999999988888888899999999998763

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.2e-15  Score=112.76  Aligned_cols=89  Identities=15%  Similarity=0.124  Sum_probs=64.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcc--cc---------------c------------ccccceeeeEEEEEEEcCe
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF--NL---------------E------------SKSTIGVEFATRSIQVDQK   58 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~--~~---------------~------------~~~~~~~~~~~~~~~~~~~   58 (223)
                      +++.++|+++|..++|||||+.+|+...-  ..               .            .....+.++......+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            45578999999999999999999963110  00               0            0012234444444555566


Q ss_pred             EEEEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCc
Q psy15625         59 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH   96 (223)
Q Consensus        59 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   96 (223)
                      ...+.++|+||+.+|..........+|++++|+|....
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G  120 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  120 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC
Confidence            67899999999999988888888999999999998653

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=1.8e-15  Score=111.10  Aligned_cols=88  Identities=20%  Similarity=0.197  Sum_probs=61.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCccc---------------------------c--cccccceeeeEEEEEEEcCeEE
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEFN---------------------------L--ESKSTIGVEFATRSIQVDQKTI   60 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~~   60 (223)
                      |.++|+++|.-++|||||+.+|+...-.                           .  ......+.+.......+.....
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            5789999999999999999998631100                           0  0001122333344444555667


Q ss_pred             EEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcc
Q psy15625         61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHL   97 (223)
Q Consensus        61 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   97 (223)
                      .+.++|+||+.+|........+.+|++++|+|..+..
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~  118 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGE  118 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTH
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCc
Confidence            8999999999999999999999999999999998753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=9.3e-15  Score=112.49  Aligned_cols=187  Identities=13%  Similarity=0.091  Sum_probs=100.5

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC----ccccccchhhhcCC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ----ERYRAITSAYYRGA   84 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----~~~~~~~~~~~~~~   84 (223)
                      ...++|+|+|+||||||||+++|..........                  +-+.-.|....    .-.++..++.....
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~------------------vavlavDpss~~~ggailgdr~rm~~~~~  113 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLK------------------VAVIAVDPSSPVTGGSILGDKTRMNDLAR  113 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCC------------------EEEEEECCC---------------CTTTT
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCc------------------eeeecCCCceeeeccccccchhHHHHhcc
Confidence            357999999999999999999997543322110                  01111111100    00001111111111


Q ss_pred             cEEEEEEeCCCcccHHH----HHHHHHHHHHhcCCceeEEEeCCCccccccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625         85 VGALLVYDIAKHLTYEN----VERWLRELRDHADQNIVIMLVGPPSLLRRYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus        85 ~~~i~v~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      +..+++...........    ......-+.....+.+-+..++.......+...+|.++++..+..+...+..+..+-.+
T Consensus       114 ~~~~~ir~~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~  193 (327)
T d2p67a1         114 AEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEV  193 (327)
T ss_dssp             CTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHH
T ss_pred             cccccccccccccccccchhhhhHHHHHHHhcCCCeEEEeeccccccchhhhhccceEEEEecCCCchhhhhhchhhhcc
Confidence            22233333333322222    22233333333334455577787888888899999999999999888887766666544


Q ss_pred             hhccCCCceEEEeecccchhhccCC--ChHHHHHHHH-------HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        161 RDHADQNIVIMLVGNKSDLRHLRAV--PADEAKTFAE-------RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       161 ~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      .        -++|+||+|+......  ...+.+....       .+..+++.|||++|+|++++++.|.+
T Consensus       194 a--------Di~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~  255 (327)
T d2p67a1         194 A--------DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID  255 (327)
T ss_dssp             C--------SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             c--------cEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHH
Confidence            3        3889999998642111  1122222222       12357999999999999999999865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.3e-14  Score=115.20  Aligned_cols=63  Identities=17%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccc---eeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI---GVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      +.+++|+|+|.+|||||||+|+|++...........   +++.....+... ....+.+|||||...
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~  119 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGS  119 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCccc
Confidence            457999999999999999999999865432221111   112212222222 222478999999643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.54  E-value=3.1e-14  Score=106.54  Aligned_cols=63  Identities=21%  Similarity=0.180  Sum_probs=44.2

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccc-cceeeeEEEEEEEcCeEEEEEEEeCCCCcc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIGVEFATRSIQVDQKTIKAQIWDTAGQER   72 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~   72 (223)
                      ....++|+++|.+|+|||||+|++++......... ..+..........++  ..+.++||||..+
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~   92 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIE   92 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEE
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccC
Confidence            34679999999999999999999999876554432 222223333333443  4789999999543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=4.1e-13  Score=103.51  Aligned_cols=93  Identities=19%  Similarity=0.240  Sum_probs=64.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcc----------------cccccccceeeeEEEEEEE--------------cCeEE
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEF----------------NLESKSTIGVEFATRSIQV--------------DQKTI   60 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~~~~~   60 (223)
                      ..+|+|+|..++|||||+.+|+...-                .....+.+++......+..              +++.+
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            44699999999999999999973211                0111112222222222211              33567


Q ss_pred             EEEEEeCCCCccccccchhhhcCCcEEEEEEeCCCcccHHHHH
Q psy15625         61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVE  103 (223)
Q Consensus        61 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  103 (223)
                      .++++||||+.+|.......++.+|++++|+|....-..+...
T Consensus        97 ~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~  139 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET  139 (341)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH
Confidence            7999999999999999999999999999999998877665554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=8.2e-13  Score=100.71  Aligned_cols=86  Identities=16%  Similarity=0.165  Sum_probs=64.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcc-cccccccceeeeEEEEEEEcCe---------------EEEEEEEeCCCCccc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDQK---------------TIKAQIWDTAGQERY   73 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~   73 (223)
                      ..++|+++|.||||||||+|++++... .....|+.|+++....+.+...               ...+++.|+||....
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            357999999999999999999998765 3455577666666666655432               347899999984322


Q ss_pred             ----c---ccchhhhcCCcEEEEEEeCCC
Q psy15625         74 ----R---AITSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        74 ----~---~~~~~~~~~~~~~i~v~d~~~   95 (223)
                          .   ......++.+|++++|+|+++
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                2   233445899999999999876

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=3.6e-13  Score=101.87  Aligned_cols=84  Identities=20%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeE---------------EEEEEEeCCCCccc---
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKT---------------IKAQIWDTAGQERY---   73 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~---   73 (223)
                      +||+++|.||||||||++++++........|+.+.++....+.+...+               ..++++|+||....   
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            689999999999999999999998877777777777666666654321               25889999995332   


Q ss_pred             ----cccchhhhcCCcEEEEEEeCCC
Q psy15625         74 ----RAITSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        74 ----~~~~~~~~~~~~~~i~v~d~~~   95 (223)
                          +......++.+|+++.|+|++.
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f~  108 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             CCCccHHHHHHHHhccceEEEeeccC
Confidence                2334456899999999999864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.41  E-value=1.8e-13  Score=101.34  Aligned_cols=87  Identities=11%  Similarity=-0.139  Sum_probs=49.2

Q ss_pred             cceeEEEeecccccchhhhHHHHH-HhhhccCCCceEEEeecccchhhccCCC-----------------------hHHH
Q psy15625        135 AVGALLVYDIAKHLTYENVERWLR-ELRDHADQNIVIMLVGNKSDLRHLRAVP-----------------------ADEA  190 (223)
Q Consensus       135 ~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-----------------------~~~~  190 (223)
                      .+.++++.|+.............. ..........|.++++||+|+.......                       .+..
T Consensus       124 ~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (244)
T d1yrba1         124 YPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMA  203 (244)
T ss_dssp             SCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHH
T ss_pred             CceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            345666666665544433222211 1111111267999999999985421100                       0000


Q ss_pred             HHH---HH--HcCCeEEEeecCCCCCHHHHHHHHHh
Q psy15625        191 KTF---AE--RNNLSFIETSALDSTNVETAFQNILT  221 (223)
Q Consensus       191 ~~~---~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~  221 (223)
                      ..+   ..  ...++++++||++|+|++++++.|.+
T Consensus       204 ~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e  239 (244)
T d1yrba1         204 YKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE  239 (244)
T ss_dssp             HHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            000   01  13468999999999999999999876

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=8.7e-12  Score=95.98  Aligned_cols=84  Identities=19%  Similarity=0.148  Sum_probs=47.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEE----------------------EcCeEEEEEEEeCCC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ----------------------VDQKTIKAQIWDTAG   69 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~D~~G   69 (223)
                      .+|+++|.||||||||+|+|++........|+.|.+.......                      .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4799999999999999999999987777767665544333211                      012335799999999


Q ss_pred             Cccc-------cccchhhhcCCcEEEEEEeCCC
Q psy15625         70 QERY-------RAITSAYYRGAVGALLVYDIAK   95 (223)
Q Consensus        70 ~~~~-------~~~~~~~~~~~~~~i~v~d~~~   95 (223)
                      ....       .......++.+|++++|+|.++
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            5332       2222234678999999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=1.2e-08  Score=77.32  Aligned_cols=30  Identities=27%  Similarity=0.533  Sum_probs=25.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCcccccc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES   40 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~   40 (223)
                      ..+|+|+|..++|||||+|+|++..+.+..
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~   55 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRG   55 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCC
Confidence            458999999999999999999998874443

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.87  E-value=2.8e-09  Score=81.20  Aligned_cols=28  Identities=25%  Similarity=0.478  Sum_probs=24.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCccccc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEFNLE   39 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~~~~   39 (223)
                      .+|+|+|..++|||||+|+|++.++.+.
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            4899999999999999999999887544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.83  E-value=2e-09  Score=80.69  Aligned_cols=59  Identities=22%  Similarity=0.421  Sum_probs=37.4

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCcccccccccceeeeEEEEEEEcCeEEEEEEEeCCCC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDQKTIKAQIWDTAGQ   70 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~   70 (223)
                      ....++|+|+|.||||||||+|+|.+....... +.+|.+.....+..+.   .+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEECCC---CeEEecCCCc
Confidence            445799999999999999999999998764433 3444444333333322   4799999994

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=5e-08  Score=70.04  Aligned_cols=59  Identities=24%  Similarity=0.193  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcccccccc------cceeeeEEEEEEEcCeEEEEEEEeCCCCcccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKS------TIGVEFATRSIQVDQKTIKAQIWDTAGQERYR   74 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~   74 (223)
                      ..+++|.+|||||||+|+|.+........-      .--++.....+.+++..   .++||||..++.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            578999999999999999987543222111      11122223334454433   689999965543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=6.4e-06  Score=59.18  Aligned_cols=25  Identities=28%  Similarity=0.384  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +..-.+|.|.-|||||||++++...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4445789999999999999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.42  E-value=9.9e-07  Score=61.00  Aligned_cols=24  Identities=29%  Similarity=0.725  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .||+++|++|+|||||++.+.+.-
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcC
Confidence            489999999999999999998754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.23  E-value=2.1e-06  Score=61.03  Aligned_cols=67  Identities=10%  Similarity=-0.037  Sum_probs=39.4

Q ss_pred             cceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625        135 AVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE  213 (223)
Q Consensus       135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  213 (223)
                      .+-+++|+++..+.....  .........   ++ --+++||.|...    ..=....+..+.++++.++|  .|++++
T Consensus       127 ~~~~~LVl~a~~~~~~~~--~~~~~~~~~---~~-~~lI~TKlDet~----~~G~~l~~~~~~~lPi~~it--~Gq~v~  193 (211)
T d1j8yf2         127 PDEVTLVIDASIGQKAYD--LASKFNQAS---KI-GTIIITKMDGTA----KGGGALSAVAATGATIKFIG--TGEKID  193 (211)
T ss_dssp             CSEEEEEEEGGGGGGHHH--HHHHHHHHC---TT-EEEEEECTTSCS----CHHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             CceEEEEEecccCcchHH--HHhhhhccc---Cc-ceEEEecccCCC----cccHHHHHHHHHCcCEEEEe--CCCCcc
Confidence            345778888877643322  111111111   22 236699999643    44566677788899988877  466654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=2e-07  Score=67.09  Aligned_cols=57  Identities=25%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCccccccc------c-cceeeeEEEEEEEcCeEEEEEEEeCCCCcccc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEFNLESK------S-TIGVEFATRSIQVDQKTIKAQIWDTAGQERYR   74 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~   74 (223)
                      ..+++|++|||||||+|+|..........      . ..++ .....+..++ +   .++||||..++.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTT-t~~~l~~~~g-g---~iiDTPG~r~~~  162 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTT-RHVELIHTSG-G---LVADTPGFSSLE  162 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------C-CCCCEEEETT-E---EEESSCSCSSCC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceee-eeEEEEecCC-C---EEEECCcccccc
Confidence            46799999999999999998764322211      1 1111 1122233443 2   478999965554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.14  E-value=1.4e-06  Score=64.86  Aligned_cols=84  Identities=10%  Similarity=0.074  Sum_probs=58.6

Q ss_pred             ccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCC
Q psy15625        130 RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDS  209 (223)
Q Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  209 (223)
                      +..+.+|.+++|.|++.+.+..+  ..+..+.    .++|.|+|+||+|+.+..  ..++..+.....+...+.+|++.+
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~--~~~~w~~~f~~~~~~~i~isa~~~   82 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAA--VTQQWKEHFENQGIRSLSINSVNG   82 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHH--HHHHHHHHHHTTTCCEEECCTTTC
T ss_pred             HHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchH--HHHHHHHHHHhcCCccceeecccC
Confidence            34578999999999999987765  2222222    267999999999996522  112223333445678999999999


Q ss_pred             CCHHHHHHHHHh
Q psy15625        210 TNVETAFQNILT  221 (223)
Q Consensus       210 ~~i~~~~~~i~~  221 (223)
                      .+..++...+.+
T Consensus        83 ~~~~~~~~~~~~   94 (273)
T d1puja_          83 QGLNQIVPASKE   94 (273)
T ss_dssp             TTGGGHHHHHHH
T ss_pred             CCccccchhhhh
Confidence            998877766543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.09  E-value=4e-06  Score=59.95  Aligned_cols=83  Identities=16%  Similarity=0.179  Sum_probs=56.8

Q ss_pred             ccccceeEEEeecccc-cchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHH--HcCCeEEEeecCC
Q psy15625        132 YRGAVGALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAE--RNNLSFIETSALD  208 (223)
Q Consensus       132 ~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~  208 (223)
                      -.+.|.+++|..+..+ .....+.+++-....   .++|.+||+||+||.+...  .+....+..  ..+.+++.+|+++
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa~~   82 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKT   82 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEecccc
Confidence            3578888999887765 344445555554444   3789999999999964221  122233333  2356899999999


Q ss_pred             CCCHHHHHHHH
Q psy15625        209 STNVETAFQNI  219 (223)
Q Consensus       209 ~~~i~~~~~~i  219 (223)
                      +.|++++.+++
T Consensus        83 ~~g~~~L~~~l   93 (225)
T d1u0la2          83 GMGIEELKEYL   93 (225)
T ss_dssp             CTTHHHHHHHH
T ss_pred             chhHhhHHHHh
Confidence            99999998876

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.95  E-value=4.9e-05  Score=53.64  Aligned_cols=60  Identities=18%  Similarity=0.034  Sum_probs=34.3

Q ss_pred             cceeEEEeecccccchhhhH-HHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEee
Q psy15625        135 AVGALLVYDIAKHLTYENVE-RWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETS  205 (223)
Q Consensus       135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  205 (223)
                      .+-+++|.++..+....... .+...+.       +--++++|.|...    ..=.+..+....+.|+.+++
T Consensus       123 ~~~~llv~~a~~~~~~~~~~~~f~~~~~-------~~~~I~TKlDe~~----~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         123 PDEVLLVLDAMTGQEALSVARAFDEKVG-------VTGLVLTKLDGDA----RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             CSEEEEEEEGGGTHHHHHHHHHHHHHTC-------CCEEEEECGGGCS----SCHHHHHHHHHHCCCEEEEC
T ss_pred             CceEEEEeccccchhHHHHHHHHHhhCC-------CCeeEEeecCccc----cchHHHHHHHHHCCCEEEEe
Confidence            35567777777664433322 2222221       1136789999543    23455666777888877665

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.84  E-value=4.4e-06  Score=57.28  Aligned_cols=27  Identities=15%  Similarity=0.345  Sum_probs=23.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++..+|+|+|+|||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            456789999999999999999999764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.82  E-value=4.4e-06  Score=57.81  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .=+|+|.|++|||||||+++|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.74  E-value=6.3e-06  Score=56.32  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+|+++|+|||||||+.++|...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=8e-06  Score=55.66  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -|+|+|.+|||||||+++|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=7.5e-06  Score=58.70  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=57.4

Q ss_pred             cccceeEEEeecccc-cchhhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHH---HHHHHHcCCeEEEeecCC
Q psy15625        133 RGAVGALLVYDIAKH-LTYENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEA---KTFAERNNLSFIETSALD  208 (223)
Q Consensus       133 ~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~  208 (223)
                      .+.|.+++|..+..+ .....+.+++-....   .+++.+||+||+||.+... ..+..   .......|.+++.+|+++
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~Sa~~   84 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTSSKD   84 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeeecCC
Confidence            578888899887765 445555565555444   4788999999999965211 11122   223345689999999999


Q ss_pred             CCCHHHHHHHH
Q psy15625        209 STNVETAFQNI  219 (223)
Q Consensus       209 ~~~i~~~~~~i  219 (223)
                      +.|++++.+++
T Consensus        85 ~~gl~~L~~~l   95 (231)
T d1t9ha2          85 QDSLADIIPHF   95 (231)
T ss_dssp             HTTCTTTGGGG
T ss_pred             hhHHHHHHHhh
Confidence            99999887654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.62  E-value=1.8e-05  Score=55.33  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.2

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++..|+|+|+|||||||+.++|...
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            35568899999999999999999753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.61  E-value=1.6e-05  Score=55.48  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +.+||+++|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.58  E-value=1.8e-05  Score=52.89  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |++.|+|||||||+.++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.54  E-value=1.5e-05  Score=55.59  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +.+|+|+|+|||||||+.+.|...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999988654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.50  E-value=2.6e-05  Score=53.07  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ++|+|.+|||||||+++|....
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            5799999999999999997643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.50  E-value=2.6e-05  Score=53.77  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988653

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.47  E-value=3e-05  Score=52.76  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+++|+|||||||+.++|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=3.2e-05  Score=53.39  Aligned_cols=23  Identities=26%  Similarity=0.619  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=3.3e-05  Score=53.36  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +.+|+|+|+|||||||+.+.|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.42  E-value=3.9e-05  Score=53.50  Aligned_cols=25  Identities=32%  Similarity=0.659  Sum_probs=22.0

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..++|+|+|+|||||||+...|...
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            3579999999999999999999763

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.42  E-value=4.1e-05  Score=52.88  Aligned_cols=23  Identities=30%  Similarity=0.586  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+|+|+|+|||||||+.+.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.1e-05  Score=52.59  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .|+|+|++|+|||||++.+...-
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            48999999999999999998654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=4.2e-05  Score=52.67  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      .||+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999865

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=3.8e-05  Score=51.65  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=2.8e-05  Score=53.71  Aligned_cols=21  Identities=29%  Similarity=0.664  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|+|++|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=5.8e-05  Score=53.16  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-|+++|.|||||||+.++|...
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999999853

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=5.4e-05  Score=54.72  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +++|+|+.|+|||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            69999999999999999998754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6.6e-05  Score=52.32  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +..|+|+|+|||||||...+|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.31  E-value=6.1e-05  Score=51.81  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|.|++||||||++++|...
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788899999999999998653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.28  E-value=5.3e-05  Score=51.49  Aligned_cols=23  Identities=39%  Similarity=0.566  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+|+++|++||||||+-+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988643

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.28  E-value=9.3e-05  Score=50.51  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .....|.++|.|||||||+-+.|...
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999888653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.0001  Score=50.41  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +.+.-|+++|.|||||||+.+++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.24  E-value=8e-05  Score=53.87  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      =+++++|+.|||||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            379999999999999999998754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.23  E-value=7.4e-05  Score=50.57  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +|+++|+|||||||+-+.|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.4e-05  Score=53.26  Aligned_cols=23  Identities=48%  Similarity=0.625  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999998754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.22  E-value=8.3e-05  Score=54.17  Aligned_cols=23  Identities=48%  Similarity=0.599  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +++|+|++|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            79999999999999999998643

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.22  E-value=9.6e-05  Score=51.89  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999998754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.21  E-value=9e-05  Score=50.46  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999998654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=8.4e-05  Score=51.29  Aligned_cols=21  Identities=43%  Similarity=0.591  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999765

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.21  E-value=8.3e-05  Score=53.26  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            58999999999999999887753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00035  Score=51.50  Aligned_cols=62  Identities=21%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhCccc--ccc---cccceeeeEEEEEEE-cCeEEEEEEEeCCCCcc
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFN--LES---KSTIGVEFATRSIQV-DQKTIKAQIWDTAGQER   72 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~   72 (223)
                      .+..-|.|+|+.++|||+|+|.|.+....  ...   ..|.|+-.  ....+ .+....+.++||.|...
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~--~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM--WCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEE--EEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEE--EEeeccCCCCceEEEEecccccc
Confidence            34567999999999999999999986532  111   12222211  11112 34556789999999543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=9.4e-05  Score=53.80  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            78999999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=9.7e-05  Score=50.11  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -=++|+|++||||||+.++|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            34667999999999999999753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=0.00014  Score=50.46  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..+-|+|.|++|||||||.++|...
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4667999999999999999999753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00011  Score=50.93  Aligned_cols=21  Identities=43%  Similarity=0.724  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00011  Score=54.38  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++|+|+.|||||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68999999999999999998754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.15  E-value=0.00011  Score=52.76  Aligned_cols=23  Identities=39%  Similarity=0.540  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            58999999999999999998764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.14  E-value=0.00012  Score=49.81  Aligned_cols=21  Identities=29%  Similarity=0.493  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            667799999999999999764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.14  E-value=0.00012  Score=52.70  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35789999999999999998854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00013  Score=51.35  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|+||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.09  E-value=9.3e-05  Score=52.90  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            48999999999999999998854

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.09  E-value=0.00013  Score=52.44  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58999999999999999998754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00017  Score=50.25  Aligned_cols=24  Identities=17%  Similarity=0.505  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.|+|+|+|||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            446899999999999999999763

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00013  Score=52.44  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            57999999999999999998753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.04  E-value=0.00015  Score=52.34  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57999999999999999998864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00019  Score=50.64  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ++-|+|.|++|||||||.++|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            577999999999999999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00011  Score=52.70  Aligned_cols=22  Identities=41%  Similarity=0.661  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -++++|+.|||||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4899999999999999999874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.03  E-value=0.00022  Score=52.09  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +.-|++.|+||+|||||.+++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999999764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.03  E-value=0.00016  Score=50.28  Aligned_cols=21  Identities=19%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      -|.|+|+|||||||+..+|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999975

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.01  E-value=0.00019  Score=48.87  Aligned_cols=20  Identities=20%  Similarity=0.566  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q psy15625         14 VVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~   33 (223)
                      |+++|++||||||+-+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.00  E-value=0.00053  Score=45.85  Aligned_cols=27  Identities=30%  Similarity=0.289  Sum_probs=22.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      +..-|++-|+-|||||||++.+...--
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            456789999999999999999987643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00011  Score=50.94  Aligned_cols=25  Identities=28%  Similarity=0.258  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ....|.++|.|||||||+-+.|...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.00021  Score=51.47  Aligned_cols=47  Identities=9%  Similarity=0.046  Sum_probs=29.4

Q ss_pred             cccceeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccch
Q psy15625        133 RGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL  179 (223)
Q Consensus       133 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  179 (223)
                      -.-.-++++..++.+-+..........+......+..++++-.-.|.
T Consensus       149 ~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~  195 (238)
T d1vpla_         149 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE  195 (238)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            34445666667887777766666666665555556777776555443

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.0002  Score=49.75  Aligned_cols=21  Identities=52%  Similarity=0.782  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|+|++|||||||.++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.97  E-value=0.0002  Score=49.31  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=18.2

Q ss_pred             EE-EEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KV-VLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i-~v~G~~~~GKStli~~l~~~   34 (223)
                      || +|.|.+||||||+++.|...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            44 56799999999999999643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.96  E-value=0.00011  Score=53.52  Aligned_cols=22  Identities=41%  Similarity=0.584  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +++|+|+.|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            7999999999999999988764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.96  E-value=0.00021  Score=50.70  Aligned_cols=24  Identities=17%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++|+|-|+|||||||..+.|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999998763

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.93  E-value=0.00022  Score=51.99  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            58999999999999999998753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.90  E-value=0.00035  Score=49.29  Aligned_cols=28  Identities=18%  Similarity=0.408  Sum_probs=23.1

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +..++.-|+++|++||||||.+-+|...
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3455678999999999999999998653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.89  E-value=0.00024  Score=51.74  Aligned_cols=43  Identities=5%  Similarity=0.153  Sum_probs=28.0

Q ss_pred             eeEEEeecccccchhhhHHHHHHhhhccCCCceEEEeecccch
Q psy15625        137 GALLVYDIAKHLTYENVERWLRELRDHADQNIVIMLVGNKSDL  179 (223)
Q Consensus       137 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl  179 (223)
                      -++++..++.+-+.......+..+......+..++++-...|.
T Consensus       170 ~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~  212 (254)
T d1g6ha_         170 KMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI  212 (254)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred             CchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence            3455555887777766666666665555557888877666664

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.89  E-value=0.00014  Score=52.29  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68999999999999999998854

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=0.00038  Score=48.15  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++-|+|+|.+||||||+.+.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00028  Score=50.67  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.+++.|+||+||||+.+.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999999764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.85  E-value=0.00031  Score=48.84  Aligned_cols=28  Identities=32%  Similarity=0.549  Sum_probs=23.7

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +...++-|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            4456688999999999999999998754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.82  E-value=0.00042  Score=50.15  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=21.7

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +...|++.|+||+|||++.+++.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            4566999999999999999999753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.00034  Score=50.16  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..+++.|+||+||||+.+.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            35899999999999999998764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00045  Score=47.90  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -+++++|+||||||+++..|...-.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH
Confidence            4789999999999999988876443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.70  E-value=0.00041  Score=52.28  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .+|+|.|++|+|||||+++|...-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            369999999999999999998643

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.59  E-value=0.00066  Score=49.28  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ..-.++|.|+||+|||++++.+...-
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999988654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00065  Score=49.62  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -+++++|+||||||++++.+...-.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH
Confidence            4789999999999999999876433

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.58  E-value=0.00076  Score=47.44  Aligned_cols=27  Identities=26%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .++..-|.++|.||||||||.+.|...
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            455678999999999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.58  E-value=0.00061  Score=49.77  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -+.+.|+||+|||++++.+...-
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999998753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.00077  Score=47.38  Aligned_cols=66  Identities=9%  Similarity=0.037  Sum_probs=39.9

Q ss_pred             cceeEEEeecccccch-hhhHHHHHHhhhccCCCceEEEeecccchhhccCCChHHHHHHHHHcCCeEEEeecCCCCCHH
Q psy15625        135 AVGALLVYDIAKHLTY-ENVERWLRELRDHADQNIVIMLVGNKSDLRHLRAVPADEAKTFAERNNLSFIETSALDSTNVE  213 (223)
Q Consensus       135 ~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  213 (223)
                      .+-+++|+|+..+... ..+......+.       +--+++||.|...    ..=.+.......+.|+.+++  .|++++
T Consensus       128 p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lIlTKlDe~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         128 PHEVMLTIDASTGQNAVSQAKLFHEAVG-------LTGITLTKLDGTA----KGGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             CSEEEEEEEGGGTHHHHHHHHHHHHHSC-------CCEEEEECCTTCT----TTTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             cceeeeehhcccCcchHHHHhhhhhccC-------CceEEEeecCCCC----CccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            3567888888876433 22222222221       2256789999643    22356667778888888877  555553

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.56  E-value=0.00063  Score=48.48  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .+++.|++|+||||+++.+...-
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            48999999999999999987643

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00072  Score=48.79  Aligned_cols=24  Identities=21%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.+++.|+||+||||+++.+.+.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.50  E-value=0.0007  Score=50.67  Aligned_cols=25  Identities=28%  Similarity=0.574  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +.-.++++||||||||.|.+++.+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            3456899999999999999999764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.45  E-value=0.00084  Score=47.08  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...-|+++|++||||||.+-+|..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0011  Score=49.39  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=22.7

Q ss_pred             ccceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625          7 EYDYLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus         7 ~~~~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ....++-|+|.|.+|||||||.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            345678999999999999999988865

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00084  Score=47.30  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -|+|.|+|||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4778899999999999998753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.38  E-value=0.00084  Score=48.78  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .|+|.|++|+|||||++++...
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5789999999999999998653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.001  Score=48.09  Aligned_cols=23  Identities=35%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      --|++.|+||+|||++.+++...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999863

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0015  Score=45.85  Aligned_cols=25  Identities=32%  Similarity=0.511  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      +-|+|+|.+||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4589999999999999998865433

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.31  E-value=0.0011  Score=46.29  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -|+|-|..||||||+++.|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0011  Score=47.23  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+++.|++|+||||+++.+.+.
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            3889999999999999999875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.0016  Score=45.55  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +-|+|+|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            56999999999999999988643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0012  Score=47.94  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +-.+++.|+||+|||++++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            345999999999999999999753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0014  Score=47.70  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +-.|++.|+||+|||++++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            446999999999999999999874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0013  Score=46.60  Aligned_cols=22  Identities=18%  Similarity=0.504  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+++.|++|+||||+.+.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4889999999999999988764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.15  E-value=0.0012  Score=47.56  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .+++.|++|+||||+++.+...-
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            58999999999999999998753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0021  Score=47.29  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=21.7

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ...++=|+|.|.+|||||||...+..
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHH
Confidence            34478899999999999999987753

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0015  Score=46.28  Aligned_cols=22  Identities=23%  Similarity=0.587  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4889999999999999999875

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.002  Score=45.13  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|-|..||||||+++.|...
T Consensus         5 IviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778899999999999998753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.84  E-value=0.0021  Score=46.82  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      .--|++.|++|+|||+|.+++.+..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3459999999999999999997643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0027  Score=44.56  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|-|..||||||+++.|...
T Consensus         6 I~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            777899999999998887653

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.71  E-value=0.11  Score=37.23  Aligned_cols=85  Identities=8%  Similarity=0.020  Sum_probs=43.4

Q ss_pred             CCceeEEEeCCCccccc-------cccccceeEEEeecccccchhhhHHHHHHhhhccC-CCce-EEEeecccchhhccC
Q psy15625        114 DQNIVIMLVGPPSLLRR-------YYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD-QNIV-IMLVGNKSDLRHLRA  184 (223)
Q Consensus       114 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~Dl~~~~~  184 (223)
                      ....++++.+++.....       ....+|.++.+..+. ..+..........+..... .+.+ .-++.|+.+...   
T Consensus       113 ~~~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~---  188 (269)
T d1cp2a_         113 TDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN---  188 (269)
T ss_dssp             CTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC---
T ss_pred             hccCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC---
Confidence            34566777666543221       123467777776553 2333333333333333222 1223 346789887543   


Q ss_pred             CChHHHHHHHHHcCCeEEE
Q psy15625        185 VPADEAKTFAERNNLSFIE  203 (223)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~  203 (223)
                       ..+..+.+....+.+++.
T Consensus       189 -~~~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         189 -EYELLDAFAKELGSQLIH  206 (269)
T ss_dssp             -CHHHHHHHHHHHTCCEEE
T ss_pred             -ccchhhhhHhhcCCeEEE
Confidence             345566677777776543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.59  E-value=0.0017  Score=47.74  Aligned_cols=21  Identities=29%  Similarity=0.547  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      =|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            499999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0021  Score=45.81  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .|+|-|..||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.57  E-value=0.004  Score=48.80  Aligned_cols=23  Identities=30%  Similarity=0.694  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +-+|+++||+|||||-|.++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.51  E-value=0.0023  Score=49.26  Aligned_cols=22  Identities=36%  Similarity=0.696  Sum_probs=17.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      -+++++|+||||||+++..|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            3579999999999999865543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0072  Score=41.89  Aligned_cols=24  Identities=13%  Similarity=0.192  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -+.|.|+||+|||+|+..+..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999876543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.49  E-value=0.0038  Score=47.61  Aligned_cols=24  Identities=17%  Similarity=0.115  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .-.+++.||||+|||+|...+.+.
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998763

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.46  E-value=0.0052  Score=41.65  Aligned_cols=24  Identities=38%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      =|++.|++|+||||+.-.|.....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            489999999999999999887554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.38  E-value=0.0025  Score=48.03  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      .+++.|+||+|||+|.+++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0009  Score=46.28  Aligned_cols=19  Identities=37%  Similarity=0.663  Sum_probs=16.9

Q ss_pred             EEEcCCCCcHHHHHHHHhh
Q psy15625         15 VLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        15 ~v~G~~~~GKStli~~l~~   33 (223)
                      +|+|+.|+|||||+.++.-
T Consensus        28 vi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            5679999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.32  E-value=0.0047  Score=45.20  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..-|+|.|..|+|||||...+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999998754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0069  Score=45.18  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+.-.++++|++|+|||.|.+.|...
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchhHHHHHHHHhh
Confidence            34457899999999999999998764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.005  Score=43.80  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999999764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.24  E-value=0.0061  Score=41.31  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -|++.|++|+||||+.-.|.....
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcCC
Confidence            488999999999999999886544

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.21  E-value=0.0052  Score=47.54  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -|+|.|++|+||||.+..+...-
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhhh
Confidence            38999999999999999998753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.21  E-value=0.0057  Score=43.57  Aligned_cols=21  Identities=19%  Similarity=0.175  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      -|+|+|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999965

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.0056  Score=43.40  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -+.|.|+||+|||+|...+..+.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999887543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.05  E-value=0.0044  Score=45.81  Aligned_cols=20  Identities=30%  Similarity=0.654  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q psy15625         14 VVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~   33 (223)
                      -+++|+.||||||+++++.-
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            36899999999999999843

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.04  E-value=0.0055  Score=42.35  Aligned_cols=25  Identities=24%  Similarity=0.187  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +.-.+++.|++++|||+|+.++..-
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            4467999999999999999988754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.01  E-value=0.008  Score=40.44  Aligned_cols=25  Identities=32%  Similarity=0.558  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      .-|++.|++|+||||+.-.+.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999988877654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.86  E-value=0.0084  Score=44.97  Aligned_cols=26  Identities=23%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +.++|.|=|.-||||||+++.|....
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHH
Confidence            46889999999999999999998653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.0078  Score=42.18  Aligned_cols=21  Identities=14%  Similarity=0.286  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|=|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            788999999999999988653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.84  E-value=0.0077  Score=42.75  Aligned_cols=23  Identities=39%  Similarity=0.650  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      --+.|.|+||+|||+|+..+..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35789999999999999998765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.83  E-value=0.0075  Score=42.97  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -+.|.|+||+|||+|.-.+..+.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999887644

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.80  E-value=0.097  Score=36.46  Aligned_cols=80  Identities=18%  Similarity=0.220  Sum_probs=43.4

Q ss_pred             HHHhcCCceeEEEeCCCcccc----ccccccceeEEEeecccccchhhhHHHHHHhhhccCCCceEE-Eeecccchhhcc
Q psy15625        109 LRDHADQNIVIMLVGPPSLLR----RYYRGAVGALLVYDIAKHLTYENVERWLRELRDHADQNIVIM-LVGNKSDLRHLR  183 (223)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~  183 (223)
                      +...-....++++++.+....    ..+..+|.++++...+.. +..........+..   .+.|++ +|+|+.+..+ +
T Consensus       104 ~~~~l~~~~d~IiiD~~~~~~~~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~-~  178 (237)
T d1g3qa_         104 VIKSLKDKFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEIS-CLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD-R  178 (237)
T ss_dssp             HHHTTGGGCSEEEEECCSSSSHHHHHHHTTCSEEEEEECSCHH-HHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT-T
T ss_pred             HHHHHHhcCCEEEEcccccccccchhhhhhhhcccccccccce-ecchhhHHHHHHhh---hhhhhhhhhhccccccc-c
Confidence            333333456666666554432    344689999998876532 23333333444433   356665 8899998654 3


Q ss_pred             CCChHHHHHH
Q psy15625        184 AVPADEAKTF  193 (223)
Q Consensus       184 ~~~~~~~~~~  193 (223)
                      ....+..+.+
T Consensus       179 ~~~~~~~~~~  188 (237)
T d1g3qa_         179 DIPPEAAEDV  188 (237)
T ss_dssp             CCCHHHHHHH
T ss_pred             hhhhHHHHhh
Confidence            3344344333

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.79  E-value=0.0085  Score=41.98  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhhCc
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~~   35 (223)
                      +.+.|++|+|||-|++++.+..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999998754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.62  E-value=0.0066  Score=46.24  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=22.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +.+.-+++++||+|||||-|.++|..
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHh
Confidence            34566799999999999999999864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.52  E-value=0.014  Score=43.72  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.4

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999999764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.46  E-value=0.012  Score=43.84  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      +++.|+||+|||.|.+.+.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999999764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.43  E-value=0.0095  Score=45.83  Aligned_cols=21  Identities=38%  Similarity=0.732  Sum_probs=17.7

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~   32 (223)
                      .++ +|+|+.|+|||+++.++.
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHH
Confidence            344 488999999999999985

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.012  Score=41.79  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      .+++.|++|+||||+.+.+...
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999987653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.013  Score=40.71  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -.+++.|++|+||||+.+.+...
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Confidence            34899999999999999987763

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.31  E-value=0.012  Score=41.66  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCcc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNEF   36 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~~   36 (223)
                      -+.|.|+||+|||+|...+..+-.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999876543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.014  Score=41.51  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      --+.|.|+||+|||+|...+..+
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999998754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.22  E-value=0.015  Score=43.47  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.71  E-value=0.019  Score=41.60  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q psy15625         14 VVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~   33 (223)
                      ++|.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.61  E-value=0.02  Score=40.14  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=17.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~   33 (223)
                      --+.|.|+||+|||+|...+..
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3477889999999999876643

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.022  Score=41.62  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -|++|+|.+|+|||+|+..+..+.
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHH
Confidence            389999999999999999987654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.56  E-value=0.013  Score=42.87  Aligned_cols=15  Identities=20%  Similarity=0.665  Sum_probs=12.8

Q ss_pred             EEEEcCCCCcHHHHH
Q psy15625         14 VVLIGDSGVGKSNLL   28 (223)
Q Consensus        14 i~v~G~~~~GKStli   28 (223)
                      ++|.|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.53  E-value=0.024  Score=41.05  Aligned_cols=25  Identities=20%  Similarity=0.310  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625         10 YLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        10 ~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      +.-.+.+.|++++|||+|++.+..-
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457889999999999999998764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.36  E-value=0.029  Score=41.69  Aligned_cols=28  Identities=21%  Similarity=0.377  Sum_probs=22.0

Q ss_pred             cceeEEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625          8 YDYLFKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus         8 ~~~~~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      ..+.-.++++|++|+|||.+.+.|...-
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            3344468899999999999999887643

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.36  E-value=0.017  Score=42.67  Aligned_cols=15  Identities=27%  Similarity=0.747  Sum_probs=13.0

Q ss_pred             EEEEcCCCCcHHHHH
Q psy15625         14 VVLIGDSGVGKSNLL   28 (223)
Q Consensus        14 i~v~G~~~~GKStli   28 (223)
                      ++|.|.||+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.15  E-value=0.039  Score=34.58  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=22.4

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhhC
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~~   34 (223)
                      ..-+.|.+.|..|+|||||-++|...
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHH
Confidence            45689999999999999999998643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.026  Score=43.60  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -.++|+|.+|+|||+++..+..+.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHH
Confidence            358999999999999998876543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=0.028  Score=40.52  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q psy15625         14 VVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~   33 (223)
                      .+|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999988754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.037  Score=41.86  Aligned_cols=20  Identities=25%  Similarity=0.531  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~   32 (223)
                      -.+|.|+||+||||++..+.
T Consensus       165 ~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHHH
Confidence            46788999999999886543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.93  E-value=0.79  Score=32.72  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -+.+.|++++|||+|+-.+...
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            3578999999999999888764

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.46  E-value=0.061  Score=34.70  Aligned_cols=19  Identities=32%  Similarity=0.534  Sum_probs=14.9

Q ss_pred             EEEcCCCCcHHH-HHHHHhh
Q psy15625         15 VLIGDSGVGKSN-LLSRFTR   33 (223)
Q Consensus        15 ~v~G~~~~GKSt-li~~l~~   33 (223)
                      +++|+..||||| |++++.+
T Consensus         6 ~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHH
Confidence            468999999999 6666544

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.20  E-value=0.058  Score=39.06  Aligned_cols=22  Identities=41%  Similarity=0.700  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999888754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.19  E-value=0.09  Score=37.81  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhCc
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRNE   35 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~~   35 (223)
                      -+.|.|++++|||||+-.+....
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHHH
Confidence            36789999999999998877654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.13  Score=33.98  Aligned_cols=31  Identities=13%  Similarity=0.226  Sum_probs=26.2

Q ss_pred             ccccccceeEEEeecccccchhhhHHHHHHh
Q psy15625        130 RYYRGAVGALLVYDIAKHLTYENVERWLREL  160 (223)
Q Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (223)
                      .+++.+|++++|+|+++..++..+..|+..+
T Consensus        67 ~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i   97 (168)
T d2gjsa1          67 HCMAMGDAYVIVYSVTDKGSFEKASELRVQL   97 (168)
T ss_dssp             HHHTSCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhceeccccccccccccccccchh
Confidence            4567899999999999999999988777554

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.05  E-value=0.12  Score=36.75  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      -|+|.|++|+||+.+.+.+-..
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHHh
Confidence            4799999999999999988653

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.45  E-value=0.14  Score=36.02  Aligned_cols=20  Identities=20%  Similarity=0.333  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q psy15625         14 VVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~   33 (223)
                      ++|.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            68999999999999999754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.11  E-value=0.15  Score=35.60  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhh
Q psy15625         14 VVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~   33 (223)
                      +++.|+..+||||+++.+.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            78999999999999998754

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.67  E-value=0.097  Score=38.08  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            8899999999999998877654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.64  E-value=0.17  Score=34.58  Aligned_cols=22  Identities=18%  Similarity=0.301  Sum_probs=18.1

Q ss_pred             EEEEEcCC-CCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDS-GVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~-~~GKStli~~l~~~   34 (223)
                      |+.|.|.. ||||||+.--|...
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~a   25 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQA   25 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            68899995 99999988777654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.63  E-value=0.18  Score=34.48  Aligned_cols=25  Identities=4%  Similarity=0.008  Sum_probs=21.8

Q ss_pred             ceeEEEEEEcCCCCcHHHHHHHHhh
Q psy15625          9 DYLFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus         9 ~~~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      .....+++.|++|+|||++...+.+
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999998876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.15  E-value=0.14  Score=34.15  Aligned_cols=35  Identities=14%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             cccccceeEEEeecccccchhhhHHHHHHhhhccC
Q psy15625        131 YYRGAVGALLVYDIAKHLTYENVERWLRELRDHAD  165 (223)
Q Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  165 (223)
                      +++.+|++++|+|.++..+++.+..|+..+.....
T Consensus        67 ~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~  101 (175)
T d2bmja1          67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRG  101 (175)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccceeEEEeecccchhhhhhHHHHHHHHHHhh
Confidence            45679999999999999999999998888766543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.01  E-value=0.2  Score=33.68  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhhC
Q psy15625         14 VVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        14 i~v~G~~~~GKStli~~l~~~   34 (223)
                      |+|+|...+|||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.97  E-value=0.22  Score=31.40  Aligned_cols=21  Identities=24%  Similarity=0.166  Sum_probs=16.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q psy15625         12 FKVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        12 ~~i~v~G~~~~GKStli~~l~   32 (223)
                      -..++.+++|+|||+++-.+.
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            446779999999999886554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.66  E-value=0.39  Score=31.48  Aligned_cols=31  Identities=35%  Similarity=0.731  Sum_probs=26.2

Q ss_pred             cccccccccceeEEEeecccccchhhhHHHH
Q psy15625        127 LLRRYYRGAVGALLVYDIAKHLTYENVERWL  157 (223)
Q Consensus       127 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (223)
                      ....+++.++++++++|.++..+++.+..|+
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~   98 (170)
T d1i2ma_          68 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH   98 (170)
T ss_dssp             CGGGGTTTCCEEEEEEETTSGGGGTTHHHHH
T ss_pred             ecchhcccccchhhccccccccccchhHHHH
Confidence            4456788999999999999999998877666

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.79  E-value=0.26  Score=35.46  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=17.5

Q ss_pred             eEEEEEEcCCCCcHHHHHHHHhh
Q psy15625         11 LFKVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        11 ~~~i~v~G~~~~GKStli~~l~~   33 (223)
                      +--|++.|.-|+||||+.-.+..
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~   30 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAI   30 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHHHH
Confidence            34467899999999997766543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.01  E-value=0.19  Score=36.23  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhhC
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTRN   34 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~~   34 (223)
                      |++++|.+|+|||+|+..+..+
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            7899999999999999776544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.76  E-value=0.19  Score=36.78  Aligned_cols=14  Identities=50%  Similarity=0.750  Sum_probs=12.6

Q ss_pred             EEEcCCCCcHHHHH
Q psy15625         15 VLIGDSGVGKSNLL   28 (223)
Q Consensus        15 ~v~G~~~~GKStli   28 (223)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            69999999999965

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.20  E-value=0.32  Score=34.89  Aligned_cols=21  Identities=14%  Similarity=0.241  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~~   33 (223)
                      -+.+.|++++|||+|+-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            467899999999999877764

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.05  E-value=0.21  Score=36.72  Aligned_cols=15  Identities=47%  Similarity=0.702  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q psy15625         14 VVLIGDSGVGKSNLL   28 (223)
Q Consensus        14 i~v~G~~~~GKStli   28 (223)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999954

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.17  E-value=0.25  Score=36.31  Aligned_cols=14  Identities=50%  Similarity=0.750  Sum_probs=12.9

Q ss_pred             EEEcCCCCcHHHHH
Q psy15625         15 VLIGDSGVGKSNLL   28 (223)
Q Consensus        15 ~v~G~~~~GKStli   28 (223)
                      ++.|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            59999999999986

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.16  E-value=0.36  Score=34.45  Aligned_cols=21  Identities=29%  Similarity=0.683  Sum_probs=15.4

Q ss_pred             EE-EEEEcCCCCcHHHHHHHHh
Q psy15625         12 FK-VVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        12 ~~-i~v~G~~~~GKStli~~l~   32 (223)
                      .+ |++.|.-||||||+.-.|.
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            45 4555999999999865553

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.41  E-value=0.42  Score=34.37  Aligned_cols=20  Identities=25%  Similarity=0.556  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q psy15625         13 KVVLIGDSGVGKSNLLSRFT   32 (223)
Q Consensus        13 ~i~v~G~~~~GKStli~~l~   32 (223)
                      +|++-|.-|+||||+.--|.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57889999999999776554

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.25  E-value=0.54  Score=29.73  Aligned_cols=19  Identities=42%  Similarity=0.454  Sum_probs=14.9

Q ss_pred             EEEcCCCCcHHHHHHHHhh
Q psy15625         15 VLIGDSGVGKSNLLSRFTR   33 (223)
Q Consensus        15 ~v~G~~~~GKStli~~l~~   33 (223)
                      +++|+..|||||-+-+...
T Consensus         6 li~GpMfsGKTt~Li~~~~   24 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRVR   24 (133)
T ss_dssp             EEECCTTSCHHHHHHHHHH
T ss_pred             EEEecccCHHHHHHHHHHH
Confidence            4679999999997766543