Psyllid ID: psy1563

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MEGEEREKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLPE
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcccccccEEEcccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccccEEEcccccHHHHccccccHccEEEEccccccHEcccHHHHHHHHHHHHHHHcHHHHcccccccHccEEEEEccccHccHHHHHHHHccccccEEEEcccccHcccccHHHHHHHHHHccccHEcccccccc
Coil and Loop (DISEMBL)
megeerekenlykfkgpnpntklslSTNLIEKISGLMSLKKLRILALGRNMIktftgleplgdCLEELWISYnfiektkgigslKKLKVLYMCHNSVKewgelnkindcpvledlvfcgnpivenleESAYRVEIKKRLPrlkkldgevlpe
Flexible Loop (DISEMBL)
megeerekenlykfkgpnpntklslSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVenleesayrveikkrlprlkkldgevlpe
Low Complexity Region (SEG)
MEGEEREKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLPE
Disordered region (IsUnstruct)
************************LSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIK****************
Disordered Region (DISOPRED)
****EREKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLP*
Disordered Region (DISEMBL)
*********NLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLPE
Disordered Region (DISPRO)
**GEEREKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGEEREKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLPE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q2KID4	190	Dynein light chain 1, axo	yes	N/A	0.828	0.663	0.629	6e-36
Q4LDG9	190	Dynein light chain 1, axo	yes	N/A	0.828	0.663	0.629	1e-35
Q28G94	192	Dynein light chain 1, axo	yes	N/A	0.828	0.656	0.622	3e-35
Q6DHB1	192	Dynein light chain 1, axo	yes	N/A	0.828	0.656	0.629	3e-35
Q05A62	190	Dynein light chain 1, axo	yes	N/A	0.828	0.663	0.622	5e-35
Q641R9	192	Dynein light chain 1, axo	N/A	N/A	0.828	0.656	0.606	3e-34
Q8T888	190	Dynein light chain 1, axo	yes	N/A	0.828	0.663	0.614	6e-34
Q9XHH2	198	Dynein light chain 1, axo	N/A	N/A	0.822	0.631	0.534	1e-30
Q32PL1	345	Protein phosphatase 1 reg	no	N/A	0.875	0.385	0.321	8e-10
P22194	332	Protein phosphatase 1 reg	yes	N/A	0.848	0.388	0.274	1e-09

>sp|Q2KID4|DNAL1_BOVIN Dynein light chain 1, axonemal OS=Bos taurus GN=DNAL1 PE=2 SV=1

 Score =  149 bits (376), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 94/127 (74%), Gaps = 1/127 (0%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN IEKI+ L  LK LRIL+LGRN IK   GLE +GD LEELWISYNFIEK KGI
Sbjct: 52  KLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGI 111

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE-NLEESAYRVEIKKRLP 140
             +KKLK+LYM +N VK+W E  K+ + P LEDLVF GNP+ E +  E  +  E  KR+P
Sbjct: 112 HVMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAEGNWVEEATKRVP 171

Query: 141 RLKKLDG 147
           +LKKLDG
Sbjct: 172 KLKKLDG 178

Bos taurus (taxid: 9913)

>sp|Q4LDG9|DNAL1_HUMAN Dynein light chain 1, axonemal OS=Homo sapiens GN=DNAL1 PE=1 SV=1

 Score =  148 bits (374), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN IEKI+ L  LK LRIL+LGRN IK   GLE +GD LEELWISYNFIEK KGI
Sbjct: 52  KLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGI 111

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE-NLEESAYRVEIKKRLP 140
             +KKLK+LYM +N VK+W E  K+ + P LEDLVF GNP+ E +  E+ +  E  KR+P
Sbjct: 112 HIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVP 171

Query: 141 RLKKLDG 147
           +LKKLDG
Sbjct: 172 KLKKLDG 178

Homo sapiens (taxid: 9606)

>sp|Q28G94|DNAL1_XENTR Dynein light chain 1, axonemal OS=Xenopus tropicalis GN=dnal1 PE=2 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN IEKI+ L  LK LRIL+LGRN IK   GLE +G+ LEELWISYN IEK KGI
Sbjct: 52  KLSLSTNCIEKIANLNGLKFLRILSLGRNNIKNLNGLEAVGETLEELWISYNLIEKLKGI 111

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE-NLEESAYRVEIKKRLP 140
             +KKLKVLYM +N VK+W E +K+ + P+LED+VF GNP+ E +  E  +  E  KRLP
Sbjct: 112 HVMKKLKVLYMSNNLVKDWAEFSKLGELPLLEDMVFVGNPLEERHTAEGNWLEEAVKRLP 171

Query: 141 RLKKLDG 147
           +LKKLDG
Sbjct: 172 KLKKLDG 178

Xenopus tropicalis (taxid: 8364)

>sp|Q6DHB1|DNAL1_DANRE Dynein light chain 1, axonemal OS=Danio rerio GN=dnal1 PE=2 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 91/127 (71%), Gaps = 1/127 (0%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           +LSLSTN IEKI+ L  LK L+IL+LGRN IK   GLE +GD LEELWISYN IEK KGI
Sbjct: 52  RLSLSTNCIEKIANLNGLKNLKILSLGRNNIKNLNGLEAVGDTLEELWISYNLIEKLKGI 111

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRV-EIKKRLP 140
             +KKLKVLYM +N VKEWGE  K+ D P L DLVF GNP+ E        + E  KRLP
Sbjct: 112 HVMKKLKVLYMSNNLVKEWGEFLKLADLPSLVDLVFVGNPLEEKYSADGNWIEEATKRLP 171

Query: 141 RLKKLDG 147
           +LKKLDG
Sbjct: 172 KLKKLDG 178

Danio rerio (taxid: 7955)

>sp|Q05A62|DNAL1_MOUSE Dynein light chain 1, axonemal OS=Mus musculus GN=Dnal1 PE=2 SV=2

 Score =  146 bits (368), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 94/127 (74%), Gaps = 1/127 (0%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN IEKI+ L  LK LRIL+LGRN IK   GLE +G+ LEELWISYNFIEK KGI
Sbjct: 52  KLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGETLEELWISYNFIEKLKGI 111

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE-NLEESAYRVEIKKRLP 140
             +KKLK+LYM +N VK+W E  K+ + P LEDLVF GNP+ E +  E  +  E  KR+P
Sbjct: 112 HVMKKLKILYMSNNLVKDWAEFLKLAELPCLEDLVFVGNPLEEKHSAEGNWIDEATKRVP 171

Query: 141 RLKKLDG 147
           +LKKLDG
Sbjct: 172 KLKKLDG 178

Mus musculus (taxid: 10090)

>sp|Q641R9|DNAL1_XENLA Dynein light chain 1, axonemal OS=Xenopus laevis GN=dnal1 PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 94/127 (74%), Gaps = 1/127 (0%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN IEKI+ L  LK L+IL+LGRN IK   GLE +G+ LEELWISYN IEK KGI
Sbjct: 52  KLSLSTNCIEKIANLNGLKYLKILSLGRNNIKNLNGLEAVGETLEELWISYNLIEKLKGI 111

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE-NLEESAYRVEIKKRLP 140
             +KKLKVLYM +N VK+W E +K+ + P+L D+VF GNP+ E +  E  +  E  KRLP
Sbjct: 112 HVMKKLKVLYMSNNLVKDWAEFSKLGELPLLGDIVFVGNPLEEKHTAEGNWMEEAVKRLP 171

Query: 141 RLKKLDG 147
           +LKKLDG
Sbjct: 172 KLKKLDG 178

Xenopus laevis (taxid: 8355)

>sp|Q8T888|DNAL1_CIOIN Dynein light chain 1, axonemal OS=Ciona intestinalis GN=DNAL1 PE=2 SV=1

 Score =  142 bits (359), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 92/127 (72%), Gaps = 1/127 (0%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN IEKI+ L  LK L+IL+LGRN IK   GLE +GD LEELWISYN IEK KGI
Sbjct: 52  KLSLSTNCIEKIANLNGLKNLKILSLGRNNIKNLNGLEAVGDSLEELWISYNSIEKLKGI 111

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE-NLEESAYRVEIKKRLP 140
             LKKLKVL M +N VK+WGE NK+ + PVL +LVF GNP+ E +  E  ++  + K L 
Sbjct: 112 HVLKKLKVLLMSNNQVKDWGEFNKLQELPVLMELVFVGNPLEEKHSAEGDWQDRVTKSLK 171

Query: 141 RLKKLDG 147
            LKKLDG
Sbjct: 172 ALKKLDG 178

Ciona intestinalis (taxid: 7719)

>sp|Q9XHH2|DNAL1_CHLRE Dynein light chain 1, axonemal OS=Chlamydomonas reinhardtii GN=LC1 PE=1 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 86/129 (66%), Gaps = 4/129 (3%)

Query: 23  LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG 82
           L+LSTN IEKIS L  ++ LRIL+LGRN+IK    L+ + D LEELWISYN I    GI 
Sbjct: 53  LALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 112

Query: 83  SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV----ENLEESAYRVEIKKR 138
            L  L+VLYM +N +  WGE++K+     LEDL+  GNP+     EN   S YR+E+ KR
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172

Query: 139 LPRLKKLDG 147
           LP LKKLDG
Sbjct: 173 LPNLKKLDG 181

Associates with the gamma heavy chain in the outer arm dynein. May target p45 polypeptide (an 45 kDa axonemal component) to the motor domain of the gamma heavy chain dynein.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q32PL1|PP1R7_DANRE Protein phosphatase 1 regulatory subunit 7 OS=Danio rerio GN=ppp1r7 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 11  LYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWI 70
           L    G +  T LS+ +N I K+ GL +L  LR L L  N I+   GLE     L  L I
Sbjct: 208 LQNLDGLHNLTVLSIQSNRITKLEGLQNLVNLRELYLSHNGIEVMEGLEN-NKKLSTLDI 266

Query: 71  SYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESA 130
           + N I+K + I  L  LK  +M  N ++ W +L+++ +   LE +    NP+    ++  
Sbjct: 267 AANRIKKIENISHLTDLKEFWMNDNQIENWADLDELKNAKGLETVYLERNPLQ---KDPQ 323

Query: 131 YRVEIKKRLPRLKKLDG 147
           YR +I   LP ++++D 
Sbjct: 324 YRRKIMLALPSVRQIDA 340

Regulatory subunit of protein phosphatase 1.

Danio rerio (taxid: 7955)

>sp|P22194|SDS22_SCHPO Protein phosphatase 1 regulatory subunit SDS22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sds22 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 24/153 (15%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KL +  N I K      L+KL +L++  N I  F  L  L  CL EL++S+N +    GI
Sbjct: 174 KLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCLRELYVSHNGLTSFSGI 233

Query: 82  GSLKKLKVLYMCHNSVKE-------------WGELNKINDCPVLED----------LVFC 118
             L+ L++L + +N +K              W   N+++    +ED          + F 
Sbjct: 234 EVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIEDELSGLKKLETVYFE 293

Query: 119 GNPIVENLEESAYRVEIKKRLPRLKKLDGEVLP 151
           GNP+ +    + YR +++  LP+L+++D  ++P
Sbjct: 294 GNPL-QKTNPAVYRNKVRLCLPQLRQIDATIIP 325

Essential for the mitotic metaphase/anaphase transition. Positively modulates protein phosphatase-1. Possibly by forming a repeating helical rod that is capable of enhancing a PP1-dependent dephosphorylation activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
91087289	187	PREDICTED: similar to dynein light chain	0.835	0.679	0.685	2e-41
242025574	200	dynein light chain, putative [Pediculus	0.842	0.64	0.648	4e-41
156546228	208	PREDICTED: dynein light chain 1, axonema	0.835	0.610	0.645	3e-40
118788688	188	AGAP008526-PA [Anopheles gambiae str. PE	0.828	0.670	0.653	1e-39
157135372	186	dynein light chain [Aedes aegypti] gi|10	0.848	0.693	0.627	1e-39
380018212	200	PREDICTED: dynein light chain 1, axonema	0.848	0.645	0.620	3e-39
242023412	181	dynein light chain, putative [Pediculus	0.835	0.701	0.629	4e-39
157132095	201	dynein light chain [Aedes aegypti] gi|10	0.848	0.641	0.627	4e-39
170045276	201	dynein light chain 1 [Culex quinquefasci	0.848	0.641	0.635	5e-39
158292146	200	AGAP004416-PA [Anopheles gambiae str. PE	0.848	0.645	0.635	6e-39

>gi|91087289|ref|XP_975555.1| PREDICTED: similar to dynein light chain [Tribolium castaneum] gi|270010590|gb|EFA07038.1| hypothetical protein TcasGA2_TC010012 [Tribolium castaneum]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 103/127 (81%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN+IEKI+G+ SLK LRIL+LGRN IK+F GLE +GD LEELWISYNFIEK KG+
Sbjct: 53  KLSLSTNMIEKIAGISSLKNLRILSLGRNYIKSFAGLEGVGDSLEELWISYNFIEKMKGV 112

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
             LKKLKVLYM +N VKEW E  K+ + P LEDL+F GNP+ E++EES ++ E  KRLP 
Sbjct: 113 HVLKKLKVLYMSNNMVKEWSEFMKLQELPSLEDLLFVGNPLYESMEESVWKNEAIKRLPN 172

Query: 142 LKKLDGE 148
           LKKLDGE
Sbjct: 173 LKKLDGE 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025574|ref|XP_002433199.1| dynein light chain, putative [Pediculus humanus corporis] gi|212518740|gb|EEB20461.1| dynein light chain, putative [Pediculus humanus corporis]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/128 (64%), Positives = 107/128 (83%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
           T+LSLSTN+IEKISG+ +LK L+IL+LGRN IK+FTGLE LGD LEELWISYN IEK KG
Sbjct: 51  TRLSLSTNMIEKISGVGTLKNLKILSLGRNYIKSFTGLEALGDTLEELWISYNLIEKLKG 110

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
           I  L+ LKVLY+ +N ++EW E NK+ + P+LEDL+F GNP+ E++EE+ +++E+ KRLP
Sbjct: 111 INVLRNLKVLYISNNLIREWPEFNKLQELPLLEDLLFVGNPLQESMEENIWKIEVPKRLP 170

Query: 141 RLKKLDGE 148
            LKKLDGE
Sbjct: 171 NLKKLDGE 178

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546228|ref|XP_001604894.1| PREDICTED: dynein light chain 1, axonemal-like [Nasonia vitripennis]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/127 (64%), Positives = 102/127 (80%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN+IEKI+G+ SLKKL+IL++GRN IK FTGLE LGD LEELWISYN IEK KG+
Sbjct: 55  KLSLSTNMIEKIAGVGSLKKLKILSVGRNQIKGFTGLETLGDTLEELWISYNAIEKLKGV 114

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
            +L+ LKVLY+ +N VKEW E  ++ + P L+DLVF GNPI E LE   +R+E+ +RLP 
Sbjct: 115 NALRNLKVLYVSNNLVKEWNEFARLQEMPNLQDLVFAGNPITEGLETEQWRMEVARRLPN 174

Query: 142 LKKLDGE 148
           L+KLDGE
Sbjct: 175 LEKLDGE 181

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118788688|ref|XP_316916.3| AGAP008526-PA [Anopheles gambiae str. PEST] gi|116122866|gb|EAA12177.3| AGAP008526-PA [Anopheles gambiae str. PEST]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 103/127 (81%), Gaps = 1/127 (0%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLS+N+IEKI+GL  +K LRILALGRN IK+ +G+E +G+ LEELWISYN I+K KG+
Sbjct: 53  KLSLSSNMIEKIAGLNGMKNLRILALGRNYIKSLSGIEVVGETLEELWISYNLIDKLKGV 112

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKIND-CPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
            SL++LKVLYM +NSV++WGEL K+      LEDLVF GNP+VENLEE+ Y  E+ KRLP
Sbjct: 113 ESLRRLKVLYMANNSVRDWGELAKLQAIASTLEDLVFAGNPLVENLEEAVYVREVTKRLP 172

Query: 141 RLKKLDG 147
            LKKLDG
Sbjct: 173 TLKKLDG 179

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157135372|ref|XP_001656626.1| dynein light chain [Aedes aegypti] gi|108881255|gb|EAT45480.1| AAEL003217-PA [Aedes aegypti]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 105/129 (81%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLS+N+I+KI GL  +K LRIL+LGRN IKT TGLE +G+ LEELW+SYN I+K KG+
Sbjct: 53  KLSLSSNMIDKIVGLNGMKNLRILSLGRNYIKTLTGLEVVGETLEELWVSYNLIDKLKGV 112

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
            +LK+LKVLY+ +NS++EWGE NK+   P LE+L+F GNP+VEN++  AY+ E+ KRLP 
Sbjct: 113 ENLKRLKVLYIGNNSIREWGEFNKLQAVPTLEELLFVGNPLVENIDGVAYQREVLKRLPF 172

Query: 142 LKKLDGEVL 150
           LKKLDGE L
Sbjct: 173 LKKLDGEAL 181

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018212|ref|XP_003693028.1| PREDICTED: dynein light chain 1, axonemal-like [Apis florea]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/129 (62%), Positives = 104/129 (80%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN+IEKI+G+ +LK L+ILALGRN+IK+F GLEPLGD LEELWISYN IEK KGI
Sbjct: 54  KLSLSTNMIEKIAGIGTLKNLKILALGRNLIKSFAGLEPLGDTLEELWISYNLIEKMKGI 113

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
            ++K L+VLYM +N VK+W E N++ +   L DL+F GNP+ E+LE   ++ E+ KRLP 
Sbjct: 114 NAMKNLRVLYMSNNLVKDWHEFNRLQELTNLRDLLFVGNPLYESLEVEIWKSEVAKRLPM 173

Query: 142 LKKLDGEVL 150
           L+KLDGE++
Sbjct: 174 LEKLDGELI 182

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023412|ref|XP_002432128.1| dynein light chain, putative [Pediculus humanus corporis] gi|212517502|gb|EEB19390.1| dynein light chain, putative [Pediculus humanus corporis]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 100/127 (78%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLS+N IEKI+G  +LK L+IL+L RN+IK+F+GLEPLGD LE+LWISYN I+K KG+
Sbjct: 50  KLSLSSNSIEKITGFNNLKNLKILSLSRNVIKSFSGLEPLGDTLEQLWISYNLIDKIKGV 109

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
              K LKVLYM +N VK+W E  K+ + P+LEDLVF GNP+VE L+E  +R E  +RLP 
Sbjct: 110 SIFKALKVLYMSNNLVKDWSEFQKLQEIPLLEDLVFLGNPLVEQLDEEYWRKEAARRLPS 169

Query: 142 LKKLDGE 148
           LKKLDGE
Sbjct: 170 LKKLDGE 176

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157132095|ref|XP_001662460.1| dynein light chain [Aedes aegypti] gi|108881745|gb|EAT45970.1| AAEL002792-PA [Aedes aegypti]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 101/129 (78%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN+I+KI GL  +K LR+L+LGRN IK  +GLE + D LEELW+SYN +EK KGI
Sbjct: 53  KLSLSTNMIDKIFGLSGMKNLRVLSLGRNYIKAISGLEGVSDTLEELWLSYNLVEKLKGI 112

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
             LKKLKVLYM +N VK+W E N++ D PVLEDL+F GNP+VE++EES +R E  KRL  
Sbjct: 113 NVLKKLKVLYMSNNLVKDWVEFNRLADLPVLEDLLFAGNPLVESMEESVWRAEASKRLLS 172

Query: 142 LKKLDGEVL 150
           L+KLDGE +
Sbjct: 173 LRKLDGETV 181

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045276|ref|XP_001850241.1| dynein light chain 1 [Culex quinquefasciatus] gi|167868228|gb|EDS31611.1| dynein light chain 1 [Culex quinquefasciatus]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 101/129 (78%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN+I+KI GL  +K LRIL++GRN IK  +GLE + D LEELW+SYN IEK KGI
Sbjct: 53  KLSLSTNMIDKIFGLNGMKNLRILSVGRNYIKAISGLESVSDTLEELWLSYNLIEKLKGI 112

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
             LKKLKVLYM +N VK+W E N++ D P+LEDL+F GNP+VE++EES +R E  KRL  
Sbjct: 113 NVLKKLKVLYMSNNLVKDWVEFNRLADLPMLEDLLFAGNPLVESMEESVWRAEASKRLLS 172

Query: 142 LKKLDGEVL 150
           LKKLDGE +
Sbjct: 173 LKKLDGETV 181

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292146|ref|XP_313700.4| AGAP004416-PA [Anopheles gambiae str. PEST] gi|157017296|gb|EAA09125.4| AGAP004416-PA [Anopheles gambiae str. PEST]

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 101/129 (78%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           KLSLSTN+I+KI GL  +K LR+L+LGRN IK  +GLE + D LEELWISYN IEK KGI
Sbjct: 54  KLSLSTNMIDKIYGLSGMKNLRVLSLGRNYIKAISGLEGVSDTLEELWISYNLIEKLKGI 113

Query: 82  GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
             LK+LKVLYM +N VK+W E N++ D P+LEDL+F GNP+VE++EES +R E  KRL  
Sbjct: 114 SVLKRLKVLYMSNNLVKDWVEFNRLADLPMLEDLLFAGNPLVESMEESIWRAEASKRLLP 173

Query: 142 LKKLDGEVL 150
           LKKLDGE +
Sbjct: 174 LKKLDGETV 182

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
MGI|MGI:1921462	190	Dnalc1 "dynein, axonemal, ligh	0.828	0.663	0.622	2.4e-35
ZFIN|ZDB-GENE-040801-178	215	dnal1 "dynein, axonemal, light	0.828	0.586	0.629	2.4e-35
FB|FBgn0028858	182	CG10839 [Drosophila melanogast	0.835	0.697	0.519	2e-33
GENEDB_PFALCIPARUM|MAL8P1.46	199	MAL8P1.46 "outer arm dynein li	0.861	0.658	0.458	1.1e-25
UNIPROTKB|Q8IB59	199	MAL8P1.46 "Outer arm dynein li	0.861	0.658	0.458	1.1e-25
FB|FBgn0010747	569	Srp54k "Signal recognition par	0.453	0.121	0.434	5.6e-12
UNIPROTKB|Q53EV4	343	LRRC23 "Leucine-rich repeat-co	0.907	0.402	0.342	6.6e-12
RGD|1309150	523	Lrrc48 "leucine rich repeat co	0.861	0.250	0.362	4.6e-11
ZFIN|ZDB-GENE-051113-288	345	ppp1r7 "protein phosphatase 1,	0.868	0.382	0.323	5.2e-11
CGD|CAL0002677	374	SDS22 [Candida albicans (taxid	0.894	0.363	0.358	6.4e-11

MGI|MGI:1921462 Dnalc1 "dynein, axonemal, light chain 1" [Mus musculus (taxid:10090)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 79/127 (62%), Positives = 94/127 (74%)

Query:    22 KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
             KLSLSTN IEKI+ L  LK LRIL+LGRN IK   GLE +G+ LEELWISYNFIEK KGI
Sbjct:    52 KLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGETLEELWISYNFIEKLKGI 111

Query:    82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE-NLEESAYRVEIKKRLP 140
               +KKLK+LYM +N VK+W E  K+ + P LEDLVF GNP+ E +  E  +  E  KR+P
Sbjct:   112 HVMKKLKILYMSNNLVKDWAEFLKLAELPCLEDLVFVGNPLEEKHSAEGNWIDEATKRVP 171

Query:   141 RLKKLDG 147
             +LKKLDG
Sbjct:   172 KLKKLDG 178

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040801-178 dnal1 "dynein, axonemal, light chain 1" [Danio rerio (taxid:7955)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 80/127 (62%), Positives = 91/127 (71%)

Query:    22 KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
             +LSLSTN IEKI+ L  LK L+IL+LGRN IK   GLE +GD LEELWISYN IEK KGI
Sbjct:    75 RLSLSTNCIEKIANLNGLKNLKILSLGRNNIKNLNGLEAVGDTLEELWISYNLIEKLKGI 134

Query:    82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVE-IKKRLP 140
               +KKLKVLYM +N VKEWGE  K+ D P L DLVF GNP+ E        +E   KRLP
Sbjct:   135 HVMKKLKVLYMSNNLVKEWGEFLKLADLPSLVDLVFVGNPLEEKYSADGNWIEEATKRLP 194

Query:   141 RLKKLDG 147
             +LKKLDG
Sbjct:   195 KLKKLDG 201

GO:0008150 "biological_process" evidence=ND

FB|FBgn0028858 CG10839 [Drosophila melanogaster (taxid:7227)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 66/127 (51%), Positives = 94/127 (74%)

Query:    22 KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
             KLSLS+N+IEKI+G+  +K L++L+L RN +KT  G+EPL D LEELW+SYN IEKTK +
Sbjct:    52 KLSLSSNMIEKITGISGMKNLKVLSLARNNLKTLNGIEPLADTLEELWVSYNNIEKTKPL 111

Query:    82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
              S+K L+V Y+  N +K+W E  ++   P L ++ F GNP+ EN+++SA+  E  +RLP 
Sbjct:   112 ESMKALRVFYISFNMIKDWTEFMRMGVPPNLSEITFVGNPLNENMDQSAFTAEAVRRLPN 171

Query:   142 LKKLDGE 148
             +KKLDGE
Sbjct:   172 MKKLDGE 178

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GENEDB_PFALCIPARUM|MAL8P1.46 MAL8P1.46 "outer arm dynein light chain 2" [Plasmodium falciparum (taxid:5833)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 60/131 (45%), Positives = 85/131 (64%)

Query:    22 KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
             +LSLSTN IEK+  +  LK + IL+LGRN IK    LE +   L++LW+SYN+I+K   +
Sbjct:    56 RLSLSTNRIEKLIPMSGLKNIEILSLGRNCIKKIQYLEDISGTLKQLWLSYNYIDKLDNL 115

Query:    82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
              SLKKL+VLY+ HN +K   E++K+N  P L +L   GNPI E       ++ I K+LP+
Sbjct:   116 QSLKKLQVLYIFHNKIKSIEEIDKLNTLPELVELGLKGNPIYEGKTNEYMKLLILKKLPQ 175

Query:   142 LKKLDGEVLPE 152
             LK +D E + E
Sbjct:   176 LKIVDNETITE 186

GO:0003774 "motor activity" evidence=ISS

UNIPROTKB|Q8IB59 MAL8P1.46 "Outer arm dynein light chain 2, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 60/131 (45%), Positives = 85/131 (64%)

Query:    22 KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
             +LSLSTN IEK+  +  LK + IL+LGRN IK    LE +   L++LW+SYN+I+K   +
Sbjct:    56 RLSLSTNRIEKLIPMSGLKNIEILSLGRNCIKKIQYLEDISGTLKQLWLSYNYIDKLDNL 115

Query:    82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPR 141
              SLKKL+VLY+ HN +K   E++K+N  P L +L   GNPI E       ++ I K+LP+
Sbjct:   116 QSLKKLQVLYIFHNKIKSIEEIDKLNTLPELVELGLKGNPIYEGKTNEYMKLLILKKLPQ 175

Query:   142 LKKLDGEVLPE 152
             LK +D E + E
Sbjct:   176 LKIVDNETITE 186

GO:0003774 "motor activity" evidence=ISS

FB|FBgn0010747 Srp54k "Signal recognition particle protein 54k" [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 30/69 (43%), Positives = 47/69 (68%)

Query:    80 GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRL 139
             G+ S+K L+V Y+  N +K+W E  ++   P L ++ F GNP+ EN+++SA+  E  +RL
Sbjct:   497 GLESMKALRVFYISFNMIKDWTEFMRMGVPPNLSEITFVGNPLNENMDQSAFTAEAVRRL 556

Query:   140 PRLKKLDGE 148
             P +KKLDGE
Sbjct:   557 PNMKKLDGE 565

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=ISS

GO:0008312 "7S RNA binding" evidence=ISS

GO:0006617 "SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition" evidence=ISS

GO:0005048 "signal sequence binding" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q53EV4 LRRC23 "Leucine-rich repeat-containing protein 23" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 51/149 (34%), Positives = 76/149 (51%)

Query:    10 NLYKFKGPNPNTKLSLST-----NLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC 64
             +++   G +P   +SL T     N +E   G+ +L KL+ L L +NM+K   GLE L + 
Sbjct:   166 SIHMVTGLDPEKLISLHTVELRGNQLESTLGI-NLPKLKNLYLAQNMLKKVEGLEDLSN- 223

Query:    65 LEELWISYNFIEKTKGIG-SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123
             L  L +  N I+   G    +K L+ L +  N V   GEL K+ D P L  LV   NP  
Sbjct:   224 LTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCT 283

Query:   124 ENLEESAYRVEIKKRLPRLKKLDGEVLPE 152
             +   E++YR E   ++P L++LD E   E
Sbjct:   284 D---ETSYRQEALVQMPYLERLDKEFYEE 309

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

RGD|1309150 Lrrc48 "leucine rich repeat containing 48" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 50/138 (36%), Positives = 73/138 (52%)

Query:     9 ENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEEL 68
             +NL++F+      KL L+ N+IE+I GL +L  L  L L  N I+   GL+ L + LE+L
Sbjct:    59 DNLWQFENLR---KLQLNNNIIERIEGLENLTHLVWLDLSFNNIEAIEGLDTLVN-LEDL 114

Query:    69 WISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128
              +S+N I K   +  L  L+VL + +N +     +  +   P L  L   GNP+ E  EE
Sbjct:   115 SLSHNRISKIDSLDPLVNLQVLSLGNNQINNMMNIIYLRRFPCLRTLSLSGNPVSE-AEE 173

Query:   129 SAYRVEIKKRLPRLKKLD 146
               Y+V I   LP L  LD
Sbjct:   174 --YKVFIYAYLPDLVYLD 189

GO:0005737 "cytoplasm" evidence=IEA;ISO

ZFIN|ZDB-GENE-051113-288 ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 44/136 (32%), Positives = 71/136 (52%)

Query:    11 LYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWI 70
             L    G +  T LS+ +N I K+ GL +L  LR L L  N I+   GLE     L  L I
Sbjct:   208 LQNLDGLHNLTVLSIQSNRITKLEGLQNLVNLRELYLSHNGIEVMEGLEN-NKKLSTLDI 266

Query:    71 SYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESA 130
             + N I+K + I  L  LK  +M  N ++ W +L+++ +   LE +    NP+ ++ +   
Sbjct:   267 AANRIKKIENISHLTDLKEFWMNDNQIENWADLDELKNAKGLETVYLERNPLQKDPQ--- 323

Query:   131 YRVEIKKRLPRLKKLD 146
             YR +I   LP ++++D
Sbjct:   324 YRRKIMLALPSVRQID 339

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

CGD|CAL0002677 SDS22 [Candida albicans (taxid:5476)]

 Score = 158 (60.7 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 52/145 (35%), Positives = 76/145 (52%)

Query:     8 KENLYKFKGPNP--NTK-LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC 64
             K  +YK +  +   N + LS+ +N I KI GL +LK L  L L  N I     LE   + 
Sbjct:   227 KNRIYKLQNMDNLVNLRVLSIQSNRITKIEGLENLKNLEELYLSHNGISEIENLENNIN- 285

Query:    65 LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNK-INDCPVLEDLVFCGNPI- 122
             L+ L ++ N I   KG+  L KL   +  +N V  + E+ K +   P LE + F GNP+ 
Sbjct:   286 LQVLDVTANKISNLKGLSHLVKLTDFWCSYNQVSSFEEIGKELGKLPDLECVYFEGNPVQ 345

Query:   123 VENLEESAYRVEIKKRL-PRLKKLD 146
             ++N   SAYR ++K  L P L K+D
Sbjct:   346 LQN--PSAYRRKMKLYLGPSLNKID 368

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IEA

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

GO:0004865 "protein serine/threonine phosphatase inhibitor activity" evidence=IEA

GO:0071862 "protein phosphatase type 1 activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4LDG9	DNAL1_HUMAN	No assigned EC number	0.6299	0.8289	0.6631	yes	N/A
Q2KID4	DNAL1_BOVIN	No assigned EC number	0.6299	0.8289	0.6631	yes	N/A
Q8T888	DNAL1_CIOIN	No assigned EC number	0.6141	0.8289	0.6631	yes	N/A
Q6DHB1	DNAL1_DANRE	No assigned EC number	0.6299	0.8289	0.6562	yes	N/A
Q05A62	DNAL1_MOUSE	No assigned EC number	0.6220	0.8289	0.6631	yes	N/A
Q28G94	DNAL1_XENTR	No assigned EC number	0.6220	0.8289	0.6562	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	152
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.4 bits (80), Expect = 0.001
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 65  LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNK 105
           LE L +S N I     + +L  L+ L +  N + +   L+ 
Sbjct: 3   LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.0 bits (79), Expect = 0.002
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLE 59
            L LS N I  +  L +L  L  L L  N I   + L 
Sbjct: 4  ETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.87
KOG1644|consensus	233		99.49
KOG1259|consensus	490		99.43
KOG4194|consensus	873		99.37
KOG0617|consensus	264		99.36
KOG2123|consensus	388		99.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.34
KOG4194|consensus	873		99.21
KOG0444|consensus	1255		99.19
KOG0617|consensus	264		99.19
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.17
KOG0444|consensus	1255		99.16
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.14
KOG1259|consensus	490		99.13
KOG0472|consensus	565		99.11
KOG0472|consensus	565		99.06
KOG1859|consensus	1096		99.05
KOG0618|consensus	1081		99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG0618|consensus	1081		98.91
KOG0532|consensus	722		98.84
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.76
KOG0531|consensus	414		98.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.74
KOG1644|consensus	233		98.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.65
KOG4237|consensus	498		98.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.62
KOG2739|consensus	260		98.61
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.57
KOG3207|consensus	505		98.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.54
KOG1859|consensus	1096		98.53
KOG0531|consensus	414		98.51
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.5
KOG3665|consensus	699		98.49
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.49
PLN03150	623	hypothetical protein; Provisional	98.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.45
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.45
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.41
KOG3207|consensus	505		98.34
KOG4237|consensus	498		98.28
KOG0532|consensus	722		98.24
KOG4579|consensus	177		98.21
PLN03150	623	hypothetical protein; Provisional	98.16
KOG4658|consensus	889		98.15
KOG3763|consensus	585		98.11
KOG2982|consensus	418		98.0
KOG4579|consensus	177		97.97
KOG1909|consensus	382		97.96
KOG4658|consensus	889		97.49
KOG3665|consensus	699		97.48
KOG1909|consensus	382		97.39
KOG2739|consensus	260		97.25
KOG2123|consensus	388		97.08
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.07
KOG2982|consensus	418		96.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.72
PRK15386	426	type III secretion protein GogB; Provisional	96.53
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.85
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.81
KOG2120|consensus	419		95.75
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.46
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.07
KOG2120|consensus	419		94.9
PRK15386	426	type III secretion protein GogB; Provisional	93.95
smart00370	26	LRR Leucine-rich repeats, outliers.	93.38
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.38
smart00446	26	LRRcap occurring C-terminal to leucine-rich repeat	93.0
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	91.61
KOG0473|consensus	326		91.21
KOG3864|consensus	221		90.84
KOG3864|consensus	221		90.3
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.0
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.42
KOG3763|consensus	585		85.83
KOG1947|consensus	482		85.4
KOG1947|consensus	482		81.47

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.87  E-value=1.5e-22  Score=134.40  Aligned_cols=144  Identities=33%  Similarity=0.492  Sum_probs=69.6

Q ss_pred             hhhhhhhccCCCCCCCcEEEccCCccccccCCc-CCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-C-
Q psy1563           5 EREKENLYKFKGPNPNTKLSLSTNLIEKISGLM-SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-I-   81 (152)
Q Consensus         5 ~~~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~-~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~-   81 (152)
                      .+.++....+.++..+++|++++|.|+.+..+. .+.+|+.|++++|.++.++++..+. +|+.|++++|.++.++. + 
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~-~L~~L~L~~N~I~~i~~~l~   84 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLP-RLKTLDLSNNRISSISEGLD   84 (175)
T ss_dssp             ------------------------------S--TT-TT--EEE-TTS--S--TT----T-T--EEE--SS---S-CHHHH
T ss_pred             ccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChh-hhhhcccCCCCCCccccchH
Confidence            456677777888889999999999999988665 5789999999999999999888887 99999999999998853 4 


Q ss_pred             CCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCcccCC
Q psy1563          82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLPE  152 (152)
Q Consensus        82 ~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~  152 (152)
                      ..+++|+.|++++|.|.++.++..+..+++|+.+++.+||++...   .||..++..+|+|+.||+.+|++
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~---~YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK---NYRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST---THHHHHHHH-TT-SEETTEETTS
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh---hHHHHHHHHcChhheeCCEEccH
Confidence            368999999999999999998888899999999999999999764   89999999999999999998874

>KOG1644|consensus

Probab=99.49  E-value=1.3e-14  Score=96.84  Aligned_cols=136  Identities=28%  Similarity=0.454  Sum_probs=114.3

Q ss_pred             cCCCCCCCcEEEccCCccccccCCc-CCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CC-CCCcccE
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKISGLM-SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IG-SLKKLKV   89 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~~l~-~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~-~~~~L~~   89 (152)
                      .+-+...-+++++++.++..+..+. .......+|+++|.+-.++.+..+. .|.+|.+++|.|+.+.+ +. .+++|+.
T Consensus        14 qy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~~   92 (233)
T KOG1644|consen   14 QYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLKT   92 (233)
T ss_pred             hhhhhccccccccccccccchhhccccccccceecccccchhhcccCCCcc-ccceEEecCCcceeeccchhhhccccce
Confidence            3334445677888888887665332 3467889999999998888887776 99999999999999954 43 5688999


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCcccCC
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLPE  152 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~  152 (152)
                      |.+.+|+|.++.+++.+..++.|+.|.+-+|+++...   .||..++..+|+|++||+..|++
T Consensus        93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~---~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKK---NYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             EEecCcchhhhhhcchhccCCccceeeecCCchhccc---CceeEEEEecCcceEeehhhhhH
Confidence            9999999999999989999999999999999999765   89999999999999999998863

>KOG1259|consensus

Probab=99.43  E-value=2.2e-14  Score=101.53  Aligned_cols=122  Identities=31%  Similarity=0.483  Sum_probs=90.1

Q ss_pred             CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCcc-ccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563          15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLE-PLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC   93 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~-~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~   93 (152)
                      .-.|+++.|++++|.+..+..+..+++|+.+|+++|.++.+.+|- ++. +.+++.++.|.+..++++..+.+|..|+++
T Consensus       304 KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG-NIKtL~La~N~iE~LSGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  304 KLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLG-NIKTLKLAQNKIETLSGLRKLYSLVNLDLS  382 (490)
T ss_pred             hhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhc-CEeeeehhhhhHhhhhhhHhhhhheecccc
Confidence            335566666666666666655556666666666666666655443 333 666667777766666667788889999999


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCC
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP  140 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~  140 (152)
                      +|+|..+.+...++++|+|+++.+.+||+.+.+   .||.++++.+.
T Consensus       383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v---dYRTKVLa~FG  426 (490)
T KOG1259|consen  383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV---DYRTKVLARFG  426 (490)
T ss_pred             ccchhhHHHhcccccccHHHHHhhcCCCccccc---hHHHHHHHHHh
Confidence            999998887778899999999999999999876   78888887664

>KOG4194|consensus

Probab=99.37  E-value=7.4e-13  Score=100.77  Aligned_cols=130  Identities=24%  Similarity=0.264  Sum_probs=95.4

Q ss_pred             hhccCCCCCCCcEEEccCCccccccC-CcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCC
Q psy1563          10 NLYKFKGPNPNTKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSL   84 (152)
Q Consensus        10 ~~~~~~~l~~l~~L~l~~n~l~~~~~-l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~   84 (152)
                      ++..|.++++|+++++.+|.++.+|. .....+++.|++.+|.|+.+.  .+..+. .|+.++|+.|.++.++.  +..-
T Consensus        94 d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrslDLSrN~is~i~~~sfp~~  172 (873)
T KOG4194|consen   94 DFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRSLDLSRNLISEIPKPSFPAK  172 (873)
T ss_pred             cHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-hhhhhhhhhchhhcccCCCCCCC
Confidence            34556788888888888888888884 344566888888888887764  444454 78888888888887753  5566


Q ss_pred             CcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          85 KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        85 ~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      .++++|++++|.|+.+.. ..|.++.+|.++.++.|.++..+.-      ++..+++|+.||.
T Consensus       173 ~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r------~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQR------SFKRLPKLESLDL  228 (873)
T ss_pred             CCceEEeecccccccccc-ccccccchheeeecccCcccccCHH------Hhhhcchhhhhhc
Confidence            688888888888888753 4677777888888888888765532      3566777777754

>KOG0617|consensus

Probab=99.36  E-value=2.6e-14  Score=93.86  Aligned_cols=126  Identities=23%  Similarity=0.243  Sum_probs=87.0

Q ss_pred             ccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCccc
Q psy1563          12 YKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLK   88 (152)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~   88 (152)
                      ..+-++..++.|-++.|+++.+| .+..+.+|+.+++.+|.+.++| .+..+. .|+.++++.|++..+|. ++.++.|+
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~-klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLP-KLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhch-hhhheecchhhhhcCccccCCCchhh
Confidence            33445666777788888888775 7777888888888888888877 555664 78888888888777763 77888888


Q ss_pred             EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563          89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL  145 (152)
Q Consensus        89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l  145 (152)
                      .|++..|.+.+-..+..|..++.|+.++++.|.+.-.|++       ++++.+|+.|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-------vg~lt~lqil  155 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-------VGKLTNLQIL  155 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-------hhhhcceeEE
Confidence            8888887776543333444556666666676666655443       5556665554

>KOG2123|consensus

Probab=99.34  E-value=3e-14  Score=99.64  Aligned_cols=110  Identities=27%  Similarity=0.352  Sum_probs=95.9

Q ss_pred             cCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCC
Q psy1563          41 KLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGN  120 (152)
Q Consensus        41 ~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n  120 (152)
                      +.+.|+.-+|.++.+.-...+. .|+.|.|+.|.|+.+..+..|++|+.|+|+.|.|.++.++..++++++|+.|++..|
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            3455566677777665555665 899999999999999889999999999999999999999999999999999999999


Q ss_pred             CCccccchhHHHHHHHHhCCCcccccCcccCC
Q psy1563         121 PIVENLEESAYRVEIKKRLPRLKKLDGEVLPE  152 (152)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~  152 (152)
                      |-.+..+. .||..+++-+|+|+.||..+|++
T Consensus        99 PCc~~ag~-nYR~~VLR~LPnLkKLDnv~Vte  129 (388)
T KOG2123|consen   99 PCCGEAGQ-NYRRKVLRVLPNLKKLDNVPVTE  129 (388)
T ss_pred             Ccccccch-hHHHHHHHHcccchhccCccccH
Confidence            99987654 89999999999999999999874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.34  E-value=6.3e-13  Score=88.53  Aligned_cols=113  Identities=32%  Similarity=0.351  Sum_probs=52.7

Q ss_pred             hhhhhhhccCC-CCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC--
Q psy1563           5 EREKENLYKFK-GPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG--   80 (152)
Q Consensus         5 ~~~~~~~~~~~-~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~--   80 (152)
                      ...++.++.+. .+.+++.|++++|.|+.++++..+++|++|++++|+++.++ .+....|+|+.|++++|++.++..  
T Consensus        28 ~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~  107 (175)
T PF14580_consen   28 GNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELE  107 (175)
T ss_dssp             --------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCG
T ss_pred             ccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhH
Confidence            34566677776 57899999999999999998999999999999999999886 443333599999999999987754  


Q ss_pred             -CCCCCcccEEEcCCCccCCccc--ccccCCCCCccEEEe
Q psy1563          81 -IGSLKKLKVLYMCHNSVKEWGE--LNKINDCPVLEDLVF  117 (152)
Q Consensus        81 -~~~~~~L~~l~l~~n~i~~~~~--~~~~~~l~~L~~l~l  117 (152)
                       +..+++|+.|++.+|++++.+.  ...+..+|+|+.||-
T Consensus       108 ~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  108 PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence             6688999999999999986543  112345788887664

>KOG4194|consensus

Probab=99.21  E-value=2e-12  Score=98.45  Aligned_cols=63  Identities=30%  Similarity=0.360  Sum_probs=28.1

Q ss_pred             CCccCcEEEcCCCcccccc--CccccccccceeeccccccCCc--cCCCCCCcccEEEcCCCccCCcc
Q psy1563          38 SLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKT--KGIGSLKKLKVLYMCHNSVKEWG  101 (152)
Q Consensus        38 ~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l--~~~~~~~~L~~l~l~~n~i~~~~  101 (152)
                      .+.+++++++..|+++.+.  .+..++ .|+.|++++|.|..+  +.|..+++|+.|++++|.|++++
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLT-SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             eecccceeecccchhhhhhcccccccc-hhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence            3444444444444444332  223343 444455555544444  12444445555555555544443

>KOG0444|consensus

Probab=99.19  E-value=6.8e-13  Score=102.05  Aligned_cols=126  Identities=25%  Similarity=0.218  Sum_probs=94.9

Q ss_pred             CCchhhhhhhh-ccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCc
Q psy1563           1 MEGEEREKENL-YKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT   78 (152)
Q Consensus         1 ~~~~~~~~~~~-~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l   78 (152)
                      |++-.|.+.++ .++.++.+|..++++.|++..+| .+.++.+|+.|++++|.++++..-...+.+|++|++|.|+++.+
T Consensus       204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L  283 (1255)
T KOG0444|consen  204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL  283 (1255)
T ss_pred             cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc
Confidence            45556666664 55778889999999999998888 78889999999999999998874444445899999999999999


Q ss_pred             cC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          79 KG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        79 ~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      |. ++.+++|+.|.+.+|+++--..+.-++.+..|+.+...+|.+.-.|
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP  332 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP  332 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc
Confidence            86 7888899999888887663233335556666666666666655433

>KOG0617|consensus

Probab=99.19  E-value=7.1e-13  Score=87.18  Aligned_cols=109  Identities=27%  Similarity=0.376  Sum_probs=55.5

Q ss_pred             CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCC--ccC-CCCCCccc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEK--TKG-IGSLKKLK   88 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~--l~~-~~~~~~L~   88 (152)
                      +..+.+|+.|++.+|+++.+| .+..+++|+.++++.|++..+| +++.+. -|+.+++++|.+.+  +|+ +-.+..|+
T Consensus        52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p-~levldltynnl~e~~lpgnff~m~tlr  130 (264)
T KOG0617|consen   52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLR  130 (264)
T ss_pred             HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc-hhhhhhccccccccccCCcchhHHHHHH
Confidence            344555555666666665555 5555566666666655555555 444443 55555555555432  233 33444455


Q ss_pred             EEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      .|++++|.+.-+|.  ..+.+++|+.++++.|.+...
T Consensus       131 alyl~dndfe~lp~--dvg~lt~lqil~lrdndll~l  165 (264)
T KOG0617|consen  131 ALYLGDNDFEILPP--DVGKLTNLQILSLRDNDLLSL  165 (264)
T ss_pred             HHHhcCCCcccCCh--hhhhhcceeEEeeccCchhhC
Confidence            55555555444432  334445555555555544433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.17  E-value=1.1e-10  Score=96.13  Aligned_cols=83  Identities=27%  Similarity=0.264  Sum_probs=42.1

Q ss_pred             CCCCCCCcEEEccCCccc-ccc-C-CcCCccCcEEEcCCCccccccCccccccccceeeccccccCC-ccC-CCCCCccc
Q psy1563          14 FKGPNPNTKLSLSTNLIE-KIS-G-LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TKG-IGSLKKLK   88 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~-~~~-~-l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~-l~~-~~~~~~L~   88 (152)
                      +..++.|+.|++++|+++ .+| . +..+++|+.|++++|.++.......+. +|+.|++++|.++. ++. ++.+++|+
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~  167 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP-NLETLDLSNNMLSGEIPNDIGSFSSLK  167 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccC-CCCEEECcCCcccccCChHHhcCCCCC
Confidence            456677777777777775 344 2 335666666666666654221112222 44455554444432 121 34444444


Q ss_pred             EEEcCCCcc
Q psy1563          89 VLYMCHNSV   97 (152)
Q Consensus        89 ~l~l~~n~i   97 (152)
                      +|++++|.+
T Consensus       168 ~L~L~~n~l  176 (968)
T PLN00113        168 VLDLGGNVL  176 (968)
T ss_pred             EEECccCcc
Confidence            444444443

>KOG0444|consensus

Probab=99.16  E-value=5.2e-12  Score=97.31  Aligned_cols=116  Identities=22%  Similarity=0.271  Sum_probs=88.6

Q ss_pred             hhhhhhh-ccCCCCCCCcEEEccCCccc--ccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCcc
Q psy1563           5 EREKENL-YKFKGPNPNTKLSLSTNLIE--KIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTK   79 (152)
Q Consensus         5 ~~~~~~~-~~~~~l~~l~~L~l~~n~l~--~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~   79 (152)
                      |+.++.+ .-++.++.|+.++++.|++.  .+| .+..+.-|+++|+++|.+.++| .+.... .+..|++|+|+|..+|
T Consensus        64 HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AK-n~iVLNLS~N~IetIP  142 (1255)
T KOG0444|consen   64 HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAK-NSIVLNLSYNNIETIP  142 (1255)
T ss_pred             hhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhc-CcEEEEcccCccccCC
Confidence            4445543 34677888888888888885  566 7778888888888888888888 554444 7778888888888887


Q ss_pred             C--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563          80 G--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV  123 (152)
Q Consensus        80 ~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~  123 (152)
                      .  +-++..|-.|++++|.+..+|.  +...+..|++|.+++||+.
T Consensus       143 n~lfinLtDLLfLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  143 NSLFINLTDLLFLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             chHHHhhHhHhhhccccchhhhcCH--HHHHHhhhhhhhcCCChhh
Confidence            5  5577888888888888888775  6677888888888888875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.14  E-value=2.2e-10  Score=94.32  Aligned_cols=121  Identities=26%  Similarity=0.308  Sum_probs=57.0

Q ss_pred             CCCcEEEccCCccc-ccc-CCcCCccCcEEEcCCCccc-ccc-CccccccccceeeccccccCCc-cC-CCCCCcccEEE
Q psy1563          18 NPNTKLSLSTNLIE-KIS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIEKT-KG-IGSLKKLKVLY   91 (152)
Q Consensus        18 ~~l~~L~l~~n~l~-~~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~L~~l~   91 (152)
                      ++|+.|++++|.++ .+| .+..+++|++|++++|.+. .+| .+..+. +|+.|++++|.++.. |. ++.+++|+.|+
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            34444444444443 222 3444455555555555443 223 233343 555555555554432 22 44555555555


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +++|.++... ...+..+++|++|++.+|.+.+..+..      +..+++|+.|+
T Consensus       219 L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~------l~~l~~L~~L~  266 (968)
T PLN00113        219 LGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPSS------LGNLKNLQYLF  266 (968)
T ss_pred             CcCCccCCcC-ChhHhcCCCCCEEECcCceeccccChh------HhCCCCCCEEE
Confidence            5555554321 123445556666666666555443321      45556665553

>KOG1259|consensus

Probab=99.13  E-value=6.3e-12  Score=89.29  Aligned_cols=123  Identities=31%  Similarity=0.312  Sum_probs=101.0

Q ss_pred             CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCC-CCCCcccEEE
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI-GSLKKLKVLY   91 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~-~~~~~L~~l~   91 (152)
                      +.....|+++++++|.|+.++ .++-.|.++.+++++|.+..+..+..+. +|+.+++++|.++.+.+| ..+-+.++|+
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcc-cceEeecccchhHhhhhhHhhhcCEeeee
Confidence            445678999999999999997 7888899999999999999988888887 999999999999988774 4677899999


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL  145 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l  145 (152)
                      ++.|.|.+++   -+..+-+|..+++.+|.+.....     ..-++++|-|+++
T Consensus       359 La~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~lde-----V~~IG~LPCLE~l  404 (490)
T KOG1259|consen  359 LAQNKIETLS---GLRKLYSLVNLDLSSNQIEELDE-----VNHIGNLPCLETL  404 (490)
T ss_pred             hhhhhHhhhh---hhHhhhhheeccccccchhhHHH-----hcccccccHHHHH
Confidence            9999998776   45678889999999999875322     1125667766544

>KOG0472|consensus

Probab=99.11  E-value=1.7e-11  Score=89.81  Aligned_cols=111  Identities=23%  Similarity=0.261  Sum_probs=94.2

Q ss_pred             CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      ++.++++..|++++|-+..+| .+..+-.|++++++.|++-.+|........++.+-.++|++..++.  ++.+.+|++|
T Consensus       431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL  510 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL  510 (565)
T ss_pred             HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence            456889999999999999998 7777888999999999998888544433377888778899988853  8899999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      ++.+|.+..+|.  .++++++++++.+.|||+. .|+
T Consensus       511 DL~nNdlq~IPp--~LgnmtnL~hLeL~gNpfr-~Pr  544 (565)
T KOG0472|consen  511 DLQNNDLQQIPP--ILGNMTNLRHLELDGNPFR-QPR  544 (565)
T ss_pred             ccCCCchhhCCh--hhccccceeEEEecCCccC-CCH
Confidence            999999999885  6889999999999999998 554

>KOG0472|consensus

Probab=99.06  E-value=1.2e-11  Score=90.61  Aligned_cols=115  Identities=23%  Similarity=0.232  Sum_probs=89.9

Q ss_pred             hhhhhhh-ccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-Ccc-ccccccceeeccccccCCccC-
Q psy1563           5 EREKENL-YKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GLE-PLGDCLEELWISYNFIEKTKG-   80 (152)
Q Consensus         5 ~~~~~~~-~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~~-~~~~~L~~l~l~~n~~~~l~~-   80 (152)
                      ++.++.+ ..+..+..|.-||++.|++..+|.|..|..|..+.++.|.++-+| ... .+. ++..+++.+|++++.|. 
T Consensus       192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~-~l~vLDLRdNklke~Pde  270 (565)
T KOG0472|consen  192 SNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLN-SLLVLDLRDNKLKEVPDE  270 (565)
T ss_pred             hhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccc-cceeeeccccccccCchH
Confidence            3444443 345667777778888888888887888888888888888887776 333 444 88999999999998876 


Q ss_pred             CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563          81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV  123 (152)
Q Consensus        81 ~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~  123 (152)
                      ++-+.+|..+++++|.|+.+|.  .++++ +|+.+.+.|||+.
T Consensus       271 ~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             HHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchH
Confidence            6778889999999999998874  67788 7899999999987

>KOG1859|consensus

Probab=99.05  E-value=2e-12  Score=100.57  Aligned_cols=113  Identities=28%  Similarity=0.296  Sum_probs=101.4

Q ss_pred             CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC   93 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~   93 (152)
                      +.-++.++.|+++.|++.++..+..+++|++||++.|.+..+|.+.....+|+.|.+.+|-++.+-++.++.+|+.|+++
T Consensus       183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS  262 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence            44477899999999999999888899999999999999999997776555899999999999999888999999999999


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      .|-+.+..++..++.+..|..|++.|||+.-.+
T Consensus       263 yNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  263 YNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             HhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999999888878888999999999999998655

>KOG0618|consensus

Probab=99.03  E-value=4.7e-11  Score=94.80  Aligned_cols=110  Identities=25%  Similarity=0.242  Sum_probs=84.5

Q ss_pred             hccCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccCCCCCCcc
Q psy1563          11 LYKFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKGIGSLKKL   87 (152)
Q Consensus        11 ~~~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L   87 (152)
                      +..+.++++|+.|+++||++..+|  .+.++..|+.|++++|+++.+| .+..+. .|++|....|++..+|.+..++.|
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~-~L~tL~ahsN~l~~fPe~~~l~qL  454 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG-RLHTLRAHSNQLLSFPELAQLPQL  454 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh-hhHHHhhcCCceeechhhhhcCcc
Confidence            455677888888888888888777  5778888888888888888887 445555 888888888888888877788888


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCC
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI  122 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~  122 (152)
                      +.++++-|.++..-.. ....++.|++|+++||.-
T Consensus       455 ~~lDlS~N~L~~~~l~-~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLP-EALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             eEEecccchhhhhhhh-hhCCCcccceeeccCCcc
Confidence            8888888888765432 222347888888888863

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=2.4e-09  Score=59.25  Aligned_cols=59  Identities=22%  Similarity=0.283  Sum_probs=42.9

Q ss_pred             cccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCC
Q psy1563          63 DCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI  122 (152)
Q Consensus        63 ~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~  122 (152)
                      |+|+.+++++|.++.++.  +..+++|+++++++|.++.++. ..+..+++|+.+++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence            367777777777777753  6677788888888888777663 3667777888888877764

...

>KOG0618|consensus

Probab=98.91  E-value=5.3e-11  Score=94.52  Aligned_cols=122  Identities=27%  Similarity=0.321  Sum_probs=99.3

Q ss_pred             CCCCCcEEEccCCcccc--ccCCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-CCCCCcccEE
Q psy1563          16 GPNPNTKLSLSTNLIEK--ISGLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVL   90 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~--~~~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l   90 (152)
                      ..+.|+.|++.+|.++.  +|.+..+++|+.|.+++|++..+|  .+.++. .|+.|++|+|.++.+|. +..+..|++|
T Consensus       357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle-~LeeL~LSGNkL~~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE-ELEELNLSGNKLTTLPDTVANLGRLHTL  435 (1081)
T ss_pred             hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH-HhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence            45678899999999974  478889999999999999999888  455665 99999999999999986 7889999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ...+|.+..+|+   +..++.|+.+|++.|.+....-..      ....|+|++||.
T Consensus       436 ~ahsN~l~~fPe---~~~l~qL~~lDlS~N~L~~~~l~~------~~p~p~LkyLdl  483 (1081)
T KOG0618|consen  436 RAHSNQLLSFPE---LAQLPQLKVLDLSCNNLSEVTLPE------ALPSPNLKYLDL  483 (1081)
T ss_pred             hhcCCceeechh---hhhcCcceEEecccchhhhhhhhh------hCCCcccceeec
Confidence            999999999984   466888999999999998643210      112257777764

>KOG0532|consensus

Probab=98.84  E-value=2.1e-10  Score=87.28  Aligned_cols=109  Identities=27%  Similarity=0.331  Sum_probs=74.1

Q ss_pred             cCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccE
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKV   89 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~   89 (152)
                      .+.++..++.++++.|+++.+| .+..++ |+.+.+++|+++.+| .++.. ++|..++.+.|.+..++. ++.+.+|+.
T Consensus       116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~-~tl~~ld~s~nei~slpsql~~l~slr~  193 (722)
T KOG0532|consen  116 AICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLL-PTLAHLDVSKNEIQSLPSQLGYLTSLRD  193 (722)
T ss_pred             hhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccc-hhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence            3456677788888888888776 555454 788888888888777 56633 377777888887776654 666667777


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      ++++.|++..+|+  .+..++ |..||++.|.+...|
T Consensus       194 l~vrRn~l~~lp~--El~~Lp-Li~lDfScNkis~iP  227 (722)
T KOG0532|consen  194 LNVRRNHLEDLPE--ELCSLP-LIRLDFSCNKISYLP  227 (722)
T ss_pred             HHHhhhhhhhCCH--HHhCCc-eeeeecccCceeecc
Confidence            7777776666654  333444 666666666666544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=6.5e-09  Score=57.51  Aligned_cols=55  Identities=27%  Similarity=0.304  Sum_probs=27.8

Q ss_pred             CCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--Cccccccccceeeccccc
Q psy1563          19 PNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNF   74 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~   74 (152)
                      +|+.|++++|+++.++  .+..+++|+++++++|.++.++  .+..+. +|+.+++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-TESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCcCCc
Confidence            4555666666655554  4455555555555555555443  222332 45555544443

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.76  E-value=1.2e-08  Score=81.84  Aligned_cols=103  Identities=21%  Similarity=0.211  Sum_probs=63.4

Q ss_pred             CCCcEEEccCCccccccCCc-C-----------------CccCcEEEcCCCccccccCccccccccceeeccccccCCcc
Q psy1563          18 NPNTKLSLSTNLIEKISGLM-S-----------------LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK   79 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~~l~-~-----------------~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~   79 (152)
                      ..|+.|++++|+++.+|.+. .                 ..+|+.|++++|.++.+|...   ++|+.|++++|.++.+|
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP  418 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLP  418 (788)
T ss_pred             cccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCC
Confidence            36788888888887765221 0                 123444555555554444221   25666666666666555


Q ss_pred             CCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          80 GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        80 ~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      .+  ..+|+.|++++|+++.+|.  .+..++.|..+++++|++++..+
T Consensus       419 ~l--~~~L~~L~Ls~NqLt~LP~--sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        419 ML--PSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             cc--hhhhhhhhhccCcccccCh--HHhhccCCCeEECCCCCCCchHH
Confidence            32  2356667777777776664  45677888899999999887543

>KOG0531|consensus

Probab=98.76  E-value=5.8e-09  Score=78.72  Aligned_cols=112  Identities=35%  Similarity=0.409  Sum_probs=93.5

Q ss_pred             CCCCCCCcEEEccCCccccccC-CcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYM   92 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~-l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l   92 (152)
                      +..+.+++.+++..|.|..+.. +..+++|+++++++|.|+.+.++..+. .|+.|++++|.++.++.+..++.|+.+++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~-~L~~L~l~~N~i~~~~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLT-LLKELNLSGNLISDISGLESLKSLKLLDL  169 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhcc-chhhheeccCcchhccCCccchhhhcccC
Confidence            6778888999999999998886 888999999999999999888888887 79999999999998888888899999999


Q ss_pred             CCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      ++|.+....... ...+..++.+++.+|.+.....
T Consensus       170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~  203 (414)
T KOG0531|consen  170 SYNRIVDIENDE-LSELISLEELDLGGNSIREIEG  203 (414)
T ss_pred             Ccchhhhhhhhh-hhhccchHHHhccCCchhcccc
Confidence            999988766411 3567788888899888876543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.74  E-value=2.4e-08  Score=80.03  Aligned_cols=94  Identities=22%  Similarity=0.277  Sum_probs=51.4

Q ss_pred             CCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCccC
Q psy1563          19 PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVK   98 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~   98 (152)
                      .|+.|++++|+++.+|.+  ..+|+.|++++|+++.+|...   ++|..|++++|.++.+|..  ..+|+.|++++|.++
T Consensus       323 ~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt  395 (788)
T PRK15387        323 ELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLT  395 (788)
T ss_pred             cccccccccCcccccccc--ccccceEecCCCccCCCCCCC---cccceehhhccccccCccc--ccccceEEecCCccc
Confidence            344455555555444422  247889999999988776432   2555566666666555432  234555666666555


Q ss_pred             CcccccccCCCCCccEEEecCCCCcc
Q psy1563          99 EWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        99 ~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      .+|..     ...|+.|++++|.+..
T Consensus       396 ~LP~l-----~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        396 SLPVL-----PSELKELMVSGNRLTS  416 (788)
T ss_pred             CCCCc-----ccCCCEEEccCCcCCC
Confidence            54421     1234445555554443

>KOG1644|consensus

Probab=98.72  E-value=2.5e-08  Score=67.19  Aligned_cols=102  Identities=25%  Similarity=0.316  Sum_probs=85.1

Q ss_pred             CCCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC---CCCCCcccEEEcC
Q psy1563          18 NPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG---IGSLKKLKVLYMC   93 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~---~~~~~~L~~l~l~   93 (152)
                      .....++++.|.+..++.+..+++|.+|.+++|+|+.+. .+....|.|..|.+.+|.+.++..   +..+++|+.|.+-
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            356678999999998888889999999999999999985 777777789999999999987744   6788999999999


Q ss_pred             CCccCCccc--ccccCCCCCccEEEecC
Q psy1563          94 HNSVKEWGE--LNKINDCPVLEDLVFCG  119 (152)
Q Consensus        94 ~n~i~~~~~--~~~~~~l~~L~~l~l~~  119 (152)
                      +|.++....  ...+..+++++.+|+.+
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            999886443  22355689999998865

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.65  E-value=1.9e-08  Score=72.94  Aligned_cols=105  Identities=28%  Similarity=0.290  Sum_probs=55.1

Q ss_pred             CCCcEEEccCCcccc-----cc-CCcCCccCcEEEcCCCcccc-----cc-CccccccccceeeccccccCCcc------
Q psy1563          18 NPNTKLSLSTNLIEK-----IS-GLMSLKKLRILALGRNMIKT-----FT-GLEPLGDCLEELWISYNFIEKTK------   79 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~-----~~-~l~~~~~L~~l~l~~n~~~~-----~~-~~~~~~~~L~~l~l~~n~~~~l~------   79 (152)
                      ++|+.|++++|.++.     +. .+..+++|+++++++|.++.     ++ .+.... +|+.+++++|.++...      
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccChHHHHHHHH
Confidence            566666666666652     11 23344566666666666552     11 122222 6677777766654321      


Q ss_pred             CCCCCCcccEEEcCCCccCCcccccccC----CCCCccEEEecCCCCc
Q psy1563          80 GIGSLKKLKVLYMCHNSVKEWGELNKIN----DCPVLEDLVFCGNPIV  123 (152)
Q Consensus        80 ~~~~~~~L~~l~l~~n~i~~~~~~~~~~----~l~~L~~l~l~~n~~~  123 (152)
                      .+..+++|+.|++++|.+++........    ..+.|+.+++.+|.++
T Consensus       216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            1345566777777777666422110001    1256667777776665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237|consensus

Probab=98.64  E-value=1.3e-09  Score=79.81  Aligned_cols=107  Identities=24%  Similarity=0.326  Sum_probs=87.5

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--Ccccccccc-ceeeccccccCCccC--CCCCCcccEE
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCL-EELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L-~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      +...++++..|+|+.+|  .|+.+++|+.+|+++|.|+++.  .+..+. ++ +.+..++|+|+.++.  ++.+..++.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            45677899999999997  7899999999999999999884  555565 44 445667799999975  8889999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      .+.-|++..++. +.++.++.+..|++..|.+....
T Consensus       146 llNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~  180 (498)
T KOG4237|consen  146 LLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSIC  180 (498)
T ss_pred             hcChhhhcchhH-HHHHHhhhcchhcccchhhhhhc
Confidence            999999998764 47788999999998888776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.62  E-value=7.2e-08  Score=49.65  Aligned_cols=41  Identities=32%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             CCCcEEEccCCccccccC-CcCCccCcEEEcCCCccccccCc
Q psy1563          18 NPNTKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFTGL   58 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~~-l~~~~~L~~l~l~~n~~~~~~~~   58 (152)
                      ++|++|++++|+|+.++. +..+++|+++++++|+++.++.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l   42 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL   42 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence            467888888888888875 88888888888888888766543

...

>KOG2739|consensus

Probab=98.61  E-value=5e-08  Score=67.90  Aligned_cols=109  Identities=25%  Similarity=0.301  Sum_probs=86.9

Q ss_pred             CCccCcEEEcCCCccccccCccccccccceeecccc--ccC-CccC-CCCCCcccEEEcCCCccCCcccccccCCCCCcc
Q psy1563          38 SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYN--FIE-KTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLE  113 (152)
Q Consensus        38 ~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n--~~~-~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~  113 (152)
                      .+..++.+.+.+..++.+.++..+. .|+.|.++.|  .++ +++. +..+++|++++++.|+|+.+..+..++.+.+|.
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            4456777777787777777777776 9999999999  433 2332 456699999999999999877666777888999


Q ss_pred             EEEecCCCCccccchhHHHHHHHHhCCCcccccCccc
Q psy1563         114 DLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVL  150 (152)
Q Consensus       114 ~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~  150 (152)
                      .+++..|.+...   ..||.+++.-+++|+.||+.-|
T Consensus       120 ~Ldl~n~~~~~l---~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  120 SLDLFNCSVTNL---DDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhcccCCcccc---ccHHHHHHHHhhhhcccccccc
Confidence            999999988873   2799999999999999988654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.57  E-value=3e-08  Score=74.24  Aligned_cols=44  Identities=25%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             cCCCCCCCcEEEccCCccccccCCc-CCccCcEEEcCCCcccccc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKISGLM-SLKKLRILALGRNMIKTFT   56 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~~l~-~~~~L~~l~l~~n~~~~~~   56 (152)
                      .+..++.|+.|+++.|+++.++... ..+.+..+++++|.++.+|
T Consensus       158 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~  202 (394)
T COG4886         158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP  202 (394)
T ss_pred             hhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCc
Confidence            3444555555555555555444222 4445555555555555444

>KOG3207|consensus

Probab=98.56  E-value=6.5e-09  Score=77.00  Aligned_cols=130  Identities=23%  Similarity=0.287  Sum_probs=76.2

Q ss_pred             CCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc---CccccccccceeeccccccCCc--cCC------
Q psy1563          15 KGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT---GLEPLGDCLEELWISYNFIEKT--KGI------   81 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~---~~~~~~~~L~~l~l~~n~~~~l--~~~------   81 (152)
                      ..+|.++.|++.+|....+.  ....+..|+.|++++|.+-..+   .+..+. .|..++++.+.++.+  ++.      
T Consensus       219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~Lnls~tgi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQLNLSSTGIASIAEPDVESLDKT  297 (505)
T ss_pred             HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc-chhhhhccccCcchhcCCCccchhhh
Confidence            45667777777766422221  2334556777777777665444   233343 677777777776655  222      


Q ss_pred             CCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          82 GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        82 ~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      -.+++|++|++..|+|.+|+....+..+++|+++.+..|++.....  .-+..+++.++++..|++
T Consensus       298 ~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~--~a~~~VIAr~~~l~~LN~  361 (505)
T KOG3207|consen  298 HTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD--TAKLLVIARISQLVKLND  361 (505)
T ss_pred             cccccceeeecccCccccccccchhhccchhhhhhccccccccccc--ceeEEeeeehhhhhhhcc
Confidence            3567777777777777777766666667777777777777754322  112223444555544443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.54  E-value=4.3e-07  Score=73.03  Aligned_cols=100  Identities=22%  Similarity=0.234  Sum_probs=65.4

Q ss_pred             CCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCc
Q psy1563          18 NPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNS   96 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~   96 (152)
                      +.++.|++++|+++.+| .+  .++|++|++++|.++.+|.-  +.+.|+.|++++|.+..+|.. -..+|+.|+++.|.
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~LtsLP~~--l~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~N~  273 (754)
T PRK15370        199 EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTSIPAT--LPDTIQEMELSINRITELPER-LPSALQSLDLFHNK  273 (754)
T ss_pred             cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccccCChh--hhccccEEECcCCccCcCChh-HhCCCCEEECcCCc
Confidence            46788888888888776 33  24788888888888776631  112677777777777766541 12467777777777


Q ss_pred             cCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          97 VKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        97 i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      ++.+|.  .+.  +.|+.|++++|.+...+
T Consensus       274 L~~LP~--~l~--~sL~~L~Ls~N~Lt~LP  299 (754)
T PRK15370        274 ISCLPE--NLP--EELRYLSVYDNSIRTLP  299 (754)
T ss_pred             cCcccc--ccC--CCCcEEECCCCccccCc
Confidence            776653  221  35777777777766543

>KOG1859|consensus

Probab=98.53  E-value=1.5e-09  Score=84.91  Aligned_cols=104  Identities=24%  Similarity=0.260  Sum_probs=86.7

Q ss_pred             CCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCC--CCCcccEEEcC
Q psy1563          17 PNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG--SLKKLKVLYMC   93 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~--~~~~L~~l~l~   93 (152)
                      ..+|...+.++|.+..++ .+.-++.++.|++++|+++.+..+..+. +|+.||+++|.+.-+|.+.  .+ .|..|+++
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLP-KLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcc-cccccccccchhccccccchhhh-hheeeeec
Confidence            346777788999998887 7778899999999999999988888887 9999999999998887642  33 49999999


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      +|.++++..+   .++.+|..||+++|-+.+.
T Consensus       241 nN~l~tL~gi---e~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  241 NNALTTLRGI---ENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             ccHHHhhhhH---HhhhhhhccchhHhhhhcc
Confidence            9999988754   4577788999999988754

>KOG0531|consensus

Probab=98.51  E-value=1.1e-08  Score=77.24  Aligned_cols=97  Identities=32%  Similarity=0.387  Sum_probs=82.6

Q ss_pred             hhhhhhhhcc-CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--
Q psy1563           4 EEREKENLYK-FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--   80 (152)
Q Consensus         4 ~~~~~~~~~~-~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--   80 (152)
                      ..+.++.+.. +..+++|+.|++++|.|+.+.++..++.|+.|++++|.++.+..+..+. .|+.+++++|.++.++.  
T Consensus       103 ~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~-~L~~l~l~~n~i~~ie~~~  181 (414)
T KOG0531|consen  103 YDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLK-SLKLLDLSYNRIVDIENDE  181 (414)
T ss_pred             cccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccch-hhhcccCCcchhhhhhhhh
Confidence            3456677777 7889999999999999999988888888999999999999988877776 89999999999988876  


Q ss_pred             CCCCCcccEEEcCCCccCCcc
Q psy1563          81 IGSLKKLKVLYMCHNSVKEWG  101 (152)
Q Consensus        81 ~~~~~~L~~l~l~~n~i~~~~  101 (152)
                      ...+.+++.+.+.+|.+..+.
T Consensus       182 ~~~~~~l~~l~l~~n~i~~i~  202 (414)
T KOG0531|consen  182 LSELISLEELDLGGNSIREIE  202 (414)
T ss_pred             hhhccchHHHhccCCchhccc
Confidence            478888888888888877543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.50  E-value=1.5e-07  Score=48.47  Aligned_cols=38  Identities=29%  Similarity=0.377  Sum_probs=22.1

Q ss_pred             ccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcc
Q psy1563          64 CLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWG  101 (152)
Q Consensus        64 ~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~  101 (152)
                      +|+.|++++|+++.++. +..+++|+.|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            45666666666666655 566666666666666666554

...

>KOG3665|consensus

Probab=98.49  E-value=4.6e-08  Score=77.82  Aligned_cols=132  Identities=23%  Similarity=0.182  Sum_probs=95.3

Q ss_pred             CCCCcEEEccCCccc--ccc-C-CcCCccCcEEEcCCCcccc--ccCccccccccceeeccccccCCccCCCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIE--KIS-G-LMSLKKLRILALGRNMIKT--FTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~--~~~-~-l~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l   90 (152)
                      -.+|++|++++...-  .++ . -..+|.|+.|.+++-.+..  +..+....|+|..||+|+++++.+.+++.+++|+.|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL  200 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence            457888888886653  333 2 2367999999999876642  223333345999999999999999889999999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCc
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGE  148 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~  148 (152)
                      .+++=.+.....+..+..+++|++||++..........-...-+....+|+|+.||+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC
Confidence            9998888876666677789999999999887665431101111223468999999875

>PLN03210 Resistant to P

Probab=98.49  E-value=9e-07  Score=74.56  Aligned_cols=99  Identities=21%  Similarity=0.140  Sum_probs=61.0

Q ss_pred             CCCCcEEEccCCcc-cccc-CCcCCccCcEEEcCCC-ccccccCccccccccceeeccccc-cCCccCCCCCCcccEEEc
Q psy1563          17 PNPNTKLSLSTNLI-EKIS-GLMSLKKLRILALGRN-MIKTFTGLEPLGDCLEELWISYNF-IEKTKGIGSLKKLKVLYM   92 (152)
Q Consensus        17 l~~l~~L~l~~n~l-~~~~-~l~~~~~L~~l~l~~n-~~~~~~~~~~~~~~L~~l~l~~n~-~~~l~~~~~~~~L~~l~l   92 (152)
                      ++.|+.|++++|.. ..+| .+..+++|+.|++++| .+..+|....+. +|+.+++++|. +..++..  ..+++.|++
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~-sL~~L~Ls~c~~L~~~p~~--~~nL~~L~L  853 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE-SLESLDLSGCSRLRTFPDI--STNISDLNL  853 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcc-ccCEEECCCCCcccccccc--ccccCEeEC
Confidence            34677777776643 3456 6677788888888776 455566333444 67777777653 2333322  346677777


Q ss_pred             CCCccCCcccccccCCCCCccEEEecCC
Q psy1563          93 CHNSVKEWGELNKINDCPVLEDLVFCGN  120 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n  120 (152)
                      ++|.++.+|.  .+..+++|+.+++.+|
T Consensus       854 s~n~i~~iP~--si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        854 SRTGIEEVPW--WIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCCCCccChH--HHhcCCCCCEEECCCC
Confidence            7777776653  4556666777777664

syringae 6; Provisional

>PLN03150 hypothetical protein; Provisional

Probab=98.46  E-value=7e-07  Score=70.74  Aligned_cols=100  Identities=23%  Similarity=0.310  Sum_probs=65.7

Q ss_pred             CcEEEccCCcccc-cc-CCcCCccCcEEEcCCCccc-ccc-CccccccccceeeccccccCCc-cC-CCCCCcccEEEcC
Q psy1563          20 NTKLSLSTNLIEK-IS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIEKT-KG-IGSLKKLKVLYMC   93 (152)
Q Consensus        20 l~~L~l~~n~l~~-~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~L~~l~l~   93 (152)
                      ++.|++++|.++. +| .+..+++|+.|++++|.++ .+| .+..+. +|+.|++++|.++.. |. ++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            5667777777763 44 6667778888888888776 455 455565 788888888877643 43 6777788888888


Q ss_pred             CCccCC-cccccccCC-CCCccEEEecCCCC
Q psy1563          94 HNSVKE-WGELNKIND-CPVLEDLVFCGNPI  122 (152)
Q Consensus        94 ~n~i~~-~~~~~~~~~-l~~L~~l~l~~n~~  122 (152)
                      +|.++. +|.  .+.. ..++..+++.+|+.
T Consensus       499 ~N~l~g~iP~--~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPA--ALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCCh--HHhhccccCceEEecCCcc
Confidence            887763 332  2332 23455666766653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.45  E-value=5.5e-07  Score=72.41  Aligned_cols=101  Identities=24%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             CCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccc-------------------cccccceeeccccccCCc
Q psy1563          19 PNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEP-------------------LGDCLEELWISYNFIEKT   78 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~-------------------~~~~L~~l~l~~n~~~~l   78 (152)
                      .|+.|++++|+++.+| .+  .++|+.|++++|.++.+|....                   ..++|+.|++++|.++.+
T Consensus       263 ~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~L  340 (754)
T PRK15370        263 ALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSL  340 (754)
T ss_pred             CCCEEECcCCccCcccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccC
Confidence            4555555555555444 22  1356666666665554431100                   012344444444444444


Q ss_pred             cCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          79 KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        79 ~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      |.. -.++|+.|++++|.++.+|.  .+  .+.|+.|++.+|.+...+
T Consensus       341 P~~-l~~sL~~L~Ls~N~L~~LP~--~l--p~~L~~LdLs~N~Lt~LP  383 (754)
T PRK15370        341 PAS-LPPELQVLDVSKNQITVLPE--TL--PPTITTLDVSRNALTNLP  383 (754)
T ss_pred             Chh-hcCcccEEECCCCCCCcCCh--hh--cCCcCEEECCCCcCCCCC
Confidence            320 11455666666666555442  11  245666677776666544

>PLN03210 Resistant to P

Probab=98.45  E-value=1.5e-06  Score=73.26  Aligned_cols=75  Identities=29%  Similarity=0.286  Sum_probs=28.4

Q ss_pred             CCcEEEccCCcccccc-CCcCCccCcEEEcCCCc-cccccCccccccccceeeccccc-cCCccC-CCCCCcccEEEcCC
Q psy1563          19 PNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNM-IKTFTGLEPLGDCLEELWISYNF-IEKTKG-IGSLKKLKVLYMCH   94 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~-~~~~~~~~~~~~~L~~l~l~~n~-~~~l~~-~~~~~~L~~l~l~~   94 (152)
                      +|+.|++.++.+..++ .+..+++|+.++++++. +..+|.+..+. +|+.|++++|. +..+|. +..+++|+.|++++
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~-~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMAT-NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCC-cccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            3334444444433332 33334444444444331 23333333332 44444444332 222222 33444444444444

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.43  E-value=4.8e-08  Score=70.82  Aligned_cols=17  Identities=24%  Similarity=0.149  Sum_probs=9.0

Q ss_pred             CCCCCCcEEEccCCccc
Q psy1563          15 KGPNPNTKLSLSTNLIE   31 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~   31 (152)
                      ..+++++.|++++|.+.
T Consensus        78 ~~~~~L~~L~l~~~~~~   94 (319)
T cd00116          78 TKGCGLQELDLSDNALG   94 (319)
T ss_pred             HhcCceeEEEccCCCCC
Confidence            33555555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.41  E-value=8.1e-08  Score=71.95  Aligned_cols=85  Identities=27%  Similarity=0.300  Sum_probs=41.8

Q ss_pred             CCCCCcEEEccCCccccccC-CcCCc-cCcEEEcCCCcccccc-CccccccccceeeccccccCCccCCC-CCCcccEEE
Q psy1563          16 GPNPNTKLSLSTNLIEKISG-LMSLK-KLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKGIG-SLKKLKVLY   91 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~~-l~~~~-~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~~~-~~~~L~~l~   91 (152)
                      .++.++.+++.+|.++.++. ....+ +|+.+++++|.+..++ .+..+. .|+.|+++.|+++.++... ..+.|..++
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccc-cccccccCCchhhhhhhhhhhhhhhhhee
Confidence            33445555555555555542 22222 4555555555555543 333343 5555555555555554422 445555555


Q ss_pred             cCCCccCCcc
Q psy1563          92 MCHNSVKEWG  101 (152)
Q Consensus        92 l~~n~i~~~~  101 (152)
                      +++|.+++++
T Consensus       193 ls~N~i~~l~  202 (394)
T COG4886         193 LSGNKISDLP  202 (394)
T ss_pred             ccCCccccCc
Confidence            5555555544

>KOG3207|consensus

Probab=98.34  E-value=1e-07  Score=70.77  Aligned_cols=111  Identities=25%  Similarity=0.271  Sum_probs=65.1

Q ss_pred             CCCCCcEEEccCCccccc-c--CCcCCccCcEEEcCCCcccc---------ccCcc-----------------ccccccc
Q psy1563          16 GPNPNTKLSLSTNLIEKI-S--GLMSLKKLRILALGRNMIKT---------FTGLE-----------------PLGDCLE   66 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~-~--~l~~~~~L~~l~l~~n~~~~---------~~~~~-----------------~~~~~L~   66 (152)
                      .+++|+.|+++.|.+... .  .-..++++++|.++.|.++.         +|.+.                 ...+.|+
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            456666666666665422 1  11134556666666666551         11100                 1113677


Q ss_pred             eeeccccccCCccC---CCCCCcccEEEcCCCccCCcccccc-----cCCCCCccEEEecCCCCcccc
Q psy1563          67 ELWISYNFIEKTKG---IGSLKKLKVLYMCHNSVKEWGELNK-----INDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        67 ~l~l~~n~~~~l~~---~~~~~~L~~l~l~~n~i~~~~~~~~-----~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      .|+|++|.+..++.   .+.++.|..|+++.+.+.++..++.     .-..++|+.|.+..|++....
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence            78887777665543   5677888888888877776554322     234677888888888876543

>KOG4237|consensus

Probab=98.28  E-value=1.6e-07  Score=69.20  Aligned_cols=85  Identities=27%  Similarity=0.268  Sum_probs=47.5

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      |..+++|+.+++++|+++.+.  .|.....++.|.+..|++..+.  .+..+. .|++|+|.+|+|+.+.+  +..+..|
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls-~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS-GLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc-cceeeeecCCeeEEEeccccccccee
Confidence            445566666666666666553  4555566666666666665543  333444 56666666666655522  4555566


Q ss_pred             cEEEcCCCccCC
Q psy1563          88 KVLYMCHNSVKE   99 (152)
Q Consensus        88 ~~l~l~~n~i~~   99 (152)
                      .++++-.|.+..
T Consensus       349 ~~l~l~~Np~~C  360 (498)
T KOG4237|consen  349 STLNLLSNPFNC  360 (498)
T ss_pred             eeeehccCcccC
Confidence            666655555443

>KOG0532|consensus

Probab=98.24  E-value=1.9e-07  Score=71.59  Aligned_cols=105  Identities=21%  Similarity=0.215  Sum_probs=89.8

Q ss_pred             CCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEEEcCCC
Q psy1563          19 PNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYMCHN   95 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n   95 (152)
                      -|+.|.+++|+++.+| .+....+|..+|.+.|.+..+| .+..+. +|+.+.+..|.+..+|. +. .-.|..|+++.|
T Consensus       144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~-slr~l~vrRn~l~~lp~El~-~LpLi~lDfScN  221 (722)
T KOG0532|consen  144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT-SLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCN  221 (722)
T ss_pred             cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHH-HHHHHHHhhhhhhhCCHHHh-CCceeeeecccC
Confidence            4788999999999887 7778899999999999998887 788887 99999999999887765 54 345788999999


Q ss_pred             ccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          96 SVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        96 ~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      +|..+|.  .+..+..|+.+-++.||+..-+.
T Consensus       222 kis~iPv--~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  222 KISYLPV--DFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             ceeecch--hhhhhhhheeeeeccCCCCCChH
Confidence            9999884  78899999999999999986553

>KOG4579|consensus

Probab=98.21  E-value=1.8e-08  Score=64.13  Aligned_cols=105  Identities=20%  Similarity=0.101  Sum_probs=55.1

Q ss_pred             CCcEEEccCCcccccc----CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEEEc
Q psy1563          19 PNTKLSLSTNLIEKIS----GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYM   92 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~----~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l   92 (152)
                      .+..++++.+++--++    .+.....|+.+++++|.+..+| .+....|..+.+++++|.++++|. +..++.|+.+++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            3444455544443221    2334445566666666666555 343333355666666666666543 556666666666


Q ss_pred             CCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      +.|.+...+..  +..+.++..|+..+|.....
T Consensus       108 ~~N~l~~~p~v--i~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  108 RFNPLNAEPRV--IAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             ccCccccchHH--HHHHHhHHHhcCCCCccccC
Confidence            66666655542  22355555555555554443

>PLN03150 hypothetical protein; Provisional

Probab=98.16  E-value=4.9e-06  Score=66.06  Aligned_cols=86  Identities=21%  Similarity=0.222  Sum_probs=70.2

Q ss_pred             cCcEEEcCCCccc-ccc-CccccccccceeeccccccCC-ccC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEE
Q psy1563          41 KLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIEK-TKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLV  116 (152)
Q Consensus        41 ~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~~-l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~  116 (152)
                      .++.|++++|.++ .+| .+..+. +|+.|+++.|.+++ +|. +..+++|+.|++++|.++... ...+..+++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEE
Confidence            3778999999887 345 566676 99999999999874 454 789999999999999998533 23678899999999


Q ss_pred             ecCCCCccccch
Q psy1563         117 FCGNPIVENLEE  128 (152)
Q Consensus       117 l~~n~~~~~~~~  128 (152)
                      +++|.+.+..|.
T Consensus       497 Ls~N~l~g~iP~  508 (623)
T PLN03150        497 LNGNSLSGRVPA  508 (623)
T ss_pred             CcCCcccccCCh
Confidence            999999987764

>KOG4658|consensus

Probab=98.15  E-value=2.2e-06  Score=70.10  Aligned_cols=111  Identities=23%  Similarity=0.164  Sum_probs=84.5

Q ss_pred             hhhhccCCCCCCCcEEEccCCc--ccccc--CCcCCccCcEEEcCCC-cccccc-CccccccccceeeccccccCCccC-
Q psy1563           8 KENLYKFKGPNPNTKLSLSTNL--IEKIS--GLMSLKKLRILALGRN-MIKTFT-GLEPLGDCLEELWISYNFIEKTKG-   80 (152)
Q Consensus         8 ~~~~~~~~~l~~l~~L~l~~n~--l~~~~--~l~~~~~L~~l~l~~n-~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-   80 (152)
                      ++.+..-..+++++.|-+.+|.  +..++  .|..++.|++||+++| .+..+| .++.+. +|++|+++.+.+..+|. 
T Consensus       535 ~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-~LryL~L~~t~I~~LP~~  613 (889)
T KOG4658|consen  535 IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-HLRYLDLSDTGISHLPSG  613 (889)
T ss_pred             hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-hhhcccccCCCccccchH
Confidence            3344444566788899888886  55555  4778999999999976 567888 778888 99999999999999975 


Q ss_pred             CCCCCcccEEEcCCCcc-CCcccccccCCCCCccEEEecCCC
Q psy1563          81 IGSLKKLKVLYMCHNSV-KEWGELNKINDCPVLEDLVFCGNP  121 (152)
Q Consensus        81 ~~~~~~L~~l~l~~n~i-~~~~~~~~~~~l~~L~~l~l~~n~  121 (152)
                      ++.+..|.+|++..+.- ...+.  -...+++|+++.+....
T Consensus       614 l~~Lk~L~~Lnl~~~~~l~~~~~--i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  614 LGNLKKLIYLNLEVTGRLESIPG--ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HHHHHhhheeccccccccccccc--hhhhcccccEEEeeccc
Confidence            88999999999987743 33322  23348888888887765

>KOG3763|consensus

Probab=98.11  E-value=2.8e-06  Score=64.97  Aligned_cols=88  Identities=32%  Similarity=0.484  Sum_probs=70.4

Q ss_pred             cccceeeccccccCCccC----CCCCCcccEEEcCCC--ccCCcccccccCCCCCccEEEecCCCCccccch-hHHHHHH
Q psy1563          63 DCLEELWISYNFIEKTKG----IGSLKKLKVLYMCHN--SVKEWGELNKINDCPVLEDLVFCGNPIVENLEE-SAYRVEI  135 (152)
Q Consensus        63 ~~L~~l~l~~n~~~~l~~----~~~~~~L~~l~l~~n--~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~  135 (152)
                      |.+..+++++|++..++.    .+..|+|..|+|++|  .+.+..++..++.++ |+.+.+.|||+++.... +.|...+
T Consensus       218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~-Leel~l~GNPlc~tf~~~s~yv~~i  296 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLP-LEELVLEGNPLCTTFSDRSEYVSAI  296 (585)
T ss_pred             cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCC-HHHeeecCCccccchhhhHHHHHHH
Confidence            578889999999877755    357899999999999  777766665666665 99999999999986644 3455577


Q ss_pred             HHhCCCcccccCcccC
Q psy1563         136 KKRLPRLKKLDGEVLP  151 (152)
Q Consensus       136 ~~~l~~L~~l~~~~~~  151 (152)
                      ...+|+|..||+..|.
T Consensus       297 ~~~FPKL~~LDG~ev~  312 (585)
T KOG3763|consen  297 RELFPKLLRLDGVEVQ  312 (585)
T ss_pred             HHhcchheeecCcccC
Confidence            7899999999997663

>KOG2982|consensus

Probab=98.00  E-value=3.9e-07  Score=65.14  Aligned_cols=91  Identities=20%  Similarity=0.410  Sum_probs=69.8

Q ss_pred             cccccceeeccccccCCcc---CCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHH
Q psy1563          61 LGDCLEELWISYNFIEKTK---GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKK  137 (152)
Q Consensus        61 ~~~~L~~l~l~~n~~~~l~---~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~  137 (152)
                      ..|++..+.+-.|++....   +...++.+.-|+++.|+|.+|...+.+..++.+..+.+.++|+.+......-|.-+++
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            3457777777777665442   2456677778899999999999999999999999999999999865543233445578


Q ss_pred             hCCCcccccCcccC
Q psy1563         138 RLPRLKKLDGEVLP  151 (152)
Q Consensus       138 ~l~~L~~l~~~~~~  151 (152)
                      ++++++.|++..|.
T Consensus       277 RL~~v~vLNGskIs  290 (418)
T KOG2982|consen  277 RLTKVQVLNGSKIS  290 (418)
T ss_pred             eccceEEecCcccc
Confidence            99999999998764

>KOG4579|consensus

Probab=97.97  E-value=4.2e-07  Score=58.05  Aligned_cols=108  Identities=23%  Similarity=0.245  Sum_probs=80.7

Q ss_pred             CCCCCCcEEEccCCcccccc-CC-cCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEE
Q psy1563          15 KGPNPNTKLSLSTNLIEKIS-GL-MSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVL   90 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~-~l-~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l   90 (152)
                      ..-.+|+...+++|.+...| .+ .+++.++++++++|.++++| .+..+. .|+.++++.|.+...+. +..+.++..|
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~-aLr~lNl~~N~l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMP-ALRSLNLRFNPLNAEPRVIAPLIKLDML  128 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhH-HhhhcccccCccccchHHHHHHHhHHHh
Confidence            34457777899999999887 43 46778999999999999998 666675 99999999999987765 4458888889


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      +...|.+..++-.......+.+..  ++.+++.+.
T Consensus       129 ds~~na~~eid~dl~~s~~~al~~--lgnepl~~~  161 (177)
T KOG4579|consen  129 DSPENARAEIDVDLFYSSLPALIK--LGNEPLGDE  161 (177)
T ss_pred             cCCCCccccCcHHHhccccHHHHH--hcCCccccc
Confidence            988888887764312233444443  356677653

>KOG1909|consensus

Probab=97.96  E-value=2.8e-06  Score=61.68  Aligned_cols=40  Identities=30%  Similarity=0.193  Sum_probs=27.4

Q ss_pred             CCCCCCCcEEEccCCcccc--cc----CCcCCccCcEEEcCCCccc
Q psy1563          14 FKGPNPNTKLSLSTNLIEK--IS----GLMSLKKLRILALGRNMIK   53 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~--~~----~l~~~~~L~~l~l~~n~~~   53 (152)
                      +..+++|++++++.|.+..  ++    .+..+..|+.|.+.+|.+.
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            4466788888888887742  22    3556777777777777765

>KOG4658|consensus

Probab=97.49  E-value=9.6e-05  Score=60.79  Aligned_cols=124  Identities=27%  Similarity=0.268  Sum_probs=89.9

Q ss_pred             CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCc--ccccc-C-ccccccccceeeccccc-cCCccC-CCCCCccc
Q psy1563          15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNM--IKTFT-G-LEPLGDCLEELWISYNF-IEKTKG-IGSLKKLK   88 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~--~~~~~-~-~~~~~~~L~~l~l~~n~-~~~l~~-~~~~~~L~   88 (152)
                      .+....+...+.+|.+..++.-..++.|++|-+..|.  +..++ . +..+. .|+.|++++|. +..+|. ++.+.+|+
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhh
Confidence            3445667777777887766644456688899888886  55555 3 44554 99999999764 567775 78899999


Q ss_pred             EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +|++..+.|+.+|.  .++.+..|.+|++..+.....++.      +...+++|++|..
T Consensus       599 yL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~------i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  599 YLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPG------ILLELQSLRVLRL  649 (889)
T ss_pred             cccccCCCccccch--HHHHHHhhheeccccccccccccc------hhhhcccccEEEe
Confidence            99999999998875  677888999999988765444332      2455777777643

>KOG3665|consensus

Probab=97.48  E-value=0.00023  Score=57.24  Aligned_cols=123  Identities=23%  Similarity=0.188  Sum_probs=83.1

Q ss_pred             CCCCCcEEEccCCcccccc---CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCC---ccCCCCCCcccE
Q psy1563          16 GPNPNTKLSLSTNLIEKIS---GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK---TKGIGSLKKLKV   89 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~---~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~---l~~~~~~~~L~~   89 (152)
                      -+|.|+.|.+.+-.+..-.   -..++|+|..||++++.++.+.++..+. +|+.|.+.+=.+..   +..+-.+++|++
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lk-nLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLK-NLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccc-cHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            3889999999887775332   3457889999999999998887777776 88877765533322   223668899999


Q ss_pred             EEcCCCccCCccc-----ccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563          90 LYMCHNSVKEWGE-----LNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK  144 (152)
Q Consensus        90 l~l~~n~i~~~~~-----~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  144 (152)
                      |+++.......+.     .+.-.-+|.|+.+|.+++.+...     .-..++..-|+|+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~-----~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE-----ILEELLNSHPNLQQ  279 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH-----HHHHHHHhCccHhh
Confidence            9998775443321     11223488999999998887753     22333444555443

>KOG1909|consensus

Probab=97.39  E-value=5.4e-05  Score=55.17  Aligned_cols=131  Identities=21%  Similarity=0.236  Sum_probs=76.9

Q ss_pred             CCCCCCCcEEEccCCcccccc---------------CCcCCccCcEEEcCCCcccccc------Cccccccccceeeccc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS---------------GLMSLKKLRILALGRNMIKTFT------GLEPLGDCLEELWISY   72 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~---------------~l~~~~~L~~l~l~~n~~~~~~------~~~~~~~~L~~l~l~~   72 (152)
                      ++.+..|++|++.+|.+....               -...-+.|+++..+.|++..-+      .+... +.|+.+.++.
T Consensus       116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~-~~leevr~~q  194 (382)
T KOG1909|consen  116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH-PTLEEVRLSQ  194 (382)
T ss_pred             HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc-cccceEEEec
Confidence            345778888888887775431               1224466888888888776432      11122 3677777777


Q ss_pred             cccCCc------cCCCCCCcccEEEcCCCccCCccc---ccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcc
Q psy1563          73 NFIEKT------KGIGSLKKLKVLYMCHNSVKEWGE---LNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLK  143 (152)
Q Consensus        73 n~~~~l------~~~~~~~~L~~l~l~~n~i~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~  143 (152)
                      |.|..-      ..+.+++.|+.|++++|-++.-..   -..+..|++|+.+.+++|.+...-.. .+-..+-...|+|+
T Consensus       195 N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~-a~~~al~~~~p~L~  273 (382)
T KOG1909|consen  195 NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI-AFVDALKESAPSLE  273 (382)
T ss_pred             ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH-HHHHHHhccCCCCc
Confidence            765311      115677777777777777664221   12345567777777777777654322 23333344566666


Q ss_pred             ccc
Q psy1563         144 KLD  146 (152)
Q Consensus       144 ~l~  146 (152)
                      +++
T Consensus       274 vl~  276 (382)
T KOG1909|consen  274 VLE  276 (382)
T ss_pred             eec
Confidence            665

>KOG2739|consensus

Probab=97.25  E-value=0.00018  Score=50.47  Aligned_cols=82  Identities=24%  Similarity=0.214  Sum_probs=46.5

Q ss_pred             CCCcEEEccCCccccccCCcCCccCcEEEcCCC--ccc-cccCccccccccceeeccccccCCcc---CCCCCCcccEEE
Q psy1563          18 NPNTKLSLSTNLIEKISGLMSLKKLRILALGRN--MIK-TFTGLEPLGDCLEELWISYNFIEKTK---GIGSLKKLKVLY   91 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n--~~~-~~~~~~~~~~~L~~l~l~~n~~~~l~---~~~~~~~L~~l~   91 (152)
                      ..++.+.+.+..++.+..+..+++|+.|.++.|  +++ .++.+....|+|+.++++.|++..+.   ++..+.+|..|+
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            344444455555555555556667777777777  332 22322222257777777777765443   245556666777


Q ss_pred             cCCCccCC
Q psy1563          92 MCHNSVKE   99 (152)
Q Consensus        92 l~~n~i~~   99 (152)
                      +.+|..+.
T Consensus       123 l~n~~~~~  130 (260)
T KOG2739|consen  123 LFNCSVTN  130 (260)
T ss_pred             cccCCccc
Confidence            77666554

>KOG2123|consensus

Probab=97.08  E-value=1.5e-05  Score=56.66  Aligned_cols=79  Identities=25%  Similarity=0.304  Sum_probs=45.2

Q ss_pred             CCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC---CCCCCcccEEEcC
Q psy1563          17 PNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG---IGSLKKLKVLYMC   93 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~---~~~~~~L~~l~l~   93 (152)
                      +.+.+.|+.-++.++.+....+++.|++|.++-|.|+.+..+..+. +|+.++|..|.|..+..   +.++++|+.|++.
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCt-rLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCT-RLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHH-HHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            3444555555555555554445566666666666666655555555 66666666666555533   4556666666665


Q ss_pred             CCc
Q psy1563          94 HNS   96 (152)
Q Consensus        94 ~n~   96 (152)
                      .|.
T Consensus        97 ENP   99 (388)
T KOG2123|consen   97 ENP   99 (388)
T ss_pred             cCC
Confidence            554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.07  E-value=0.0048  Score=38.64  Aligned_cols=100  Identities=15%  Similarity=0.268  Sum_probs=57.4

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      .|.++.+++.+.+.. .+..++  .+..+++++.+.+.++ +..++  .+.... .++.+.+.. .+..++.  +..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-ccccccccc-ccccccccccccccc
Confidence            467788999999874 576775  6778888999999885 66665  334444 788888865 4444433  667889


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecC
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCG  119 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~  119 (152)
                      ++.+.+..+ ++.++.. .+..+ .++.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~~-~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSS-SFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHTT-TTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEchh-hhcCC-CceEEEECC
Confidence            999988765 6655543 56666 788888765

>KOG2982|consensus

Probab=96.96  E-value=0.00024  Score=51.22  Aligned_cols=78  Identities=28%  Similarity=0.322  Sum_probs=38.9

Q ss_pred             CCCCcEEEccCCcccccc----CCcCCccCcEEEcCCCcccc-ccCcc-ccccccceeeccccccC--Ccc-CCCCCCcc
Q psy1563          17 PNPNTKLSLSTNLIEKIS----GLMSLKKLRILALGRNMIKT-FTGLE-PLGDCLEELWISYNFIE--KTK-GIGSLKKL   87 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~----~l~~~~~L~~l~l~~n~~~~-~~~~~-~~~~~L~~l~l~~n~~~--~l~-~~~~~~~L   87 (152)
                      ++.++++++.+|.|+.+.    .+..+|.+++|+++.|.++. +..+. ... +|+.+-+.+..+.  ... .+..+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~-nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK-NLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc-ceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            455666667777766553    34566677777777666542 22221 222 4555555444321  111 13344555


Q ss_pred             cEEEcCCC
Q psy1563          88 KVLYMCHN   95 (152)
Q Consensus        88 ~~l~l~~n   95 (152)
                      +.++++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            55555555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.72  E-value=0.0016  Score=46.64  Aligned_cols=112  Identities=21%  Similarity=0.113  Sum_probs=67.8

Q ss_pred             ccCCCCCCCcEEEccCCccccc--c----CCcCCccCcEEEcCCCcccccc--Ccc------------ccccccceeecc
Q psy1563          12 YKFKGPNPNTKLSLSTNLIEKI--S----GLMSLKKLRILALGRNMIKTFT--GLE------------PLGDCLEELWIS   71 (152)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~l~~~--~----~l~~~~~L~~l~l~~n~~~~~~--~~~------------~~~~~L~~l~l~   71 (152)
                      ..+..||.++..+++.|.+..-  +    .+...+.+.+|.+++|.+..+.  .++            .-.|.|+.+..+
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            3456899999999999998632  1    5667788999999999876432  111            112578888888


Q ss_pred             ccccCCccC------CCCCCcccEEEcCCCccCCcc--cc--cccCCCCCccEEEecCCCCc
Q psy1563          72 YNFIEKTKG------IGSLKKLKVLYMCHNSVKEWG--EL--NKINDCPVLEDLVFCGNPIV  123 (152)
Q Consensus        72 ~n~~~~l~~------~~~~~~L~~l~l~~n~i~~~~--~~--~~~~~l~~L~~l~l~~n~~~  123 (152)
                      .|++...+.      +..-..|+.+.+..|.|..-.  .+  ..+..+.+|+.|++..|-++
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            887654432      222245566666666554211  01  01223555666666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.53  E-value=0.014  Score=44.36  Aligned_cols=63  Identities=17%  Similarity=0.168  Sum_probs=41.3

Q ss_pred             ccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCC-ccccccCccccccccceeecccc-ccCCc
Q psy1563          12 YKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRN-MIKTFTGLEPLGDCLEELWISYN-FIEKT   78 (152)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n-~~~~~~~~~~~~~~L~~l~l~~n-~~~~l   78 (152)
                      ..+..+.+++.|+++++.++.+|.+  ..+|+.|.++++ .++.+|...  .+.|+.|.++.| .+..+
T Consensus        46 ~r~~~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         46 PQIEEARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HHHHHhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc
Confidence            3355578899999999988887732  346888888874 445555322  236777777776 44433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.85  E-value=0.05  Score=33.93  Aligned_cols=93  Identities=16%  Similarity=0.270  Sum_probs=48.9

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      .|.+++.++.+.+..+ +..++  .+..+++++.+.+.+ .+..++  .+.... .++.+.+..+ +..++.  +..+ .
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~-~l~~i~~~~~-~~~i~~~~f~~~-~  104 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT-NLKNIDIPSN-ITEIGSSSFSNC-N  104 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T-TECEEEETTT--BEEHTTTTTT--T
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc-cccccccCcc-ccEEchhhhcCC-C
Confidence            4677889999999774 77775  677887899999976 555554  333354 8888988765 555533  5665 8


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVL  112 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L  112 (152)
                      ++.+.+.. .++.++.. .+.++++|
T Consensus       105 l~~i~~~~-~~~~i~~~-~F~~~~~l  128 (129)
T PF13306_consen  105 LKEINIPS-NITKIEEN-AFKNCTKL  128 (129)
T ss_dssp             --EEE-TT-B-SS-----GGG-----
T ss_pred             ceEEEECC-CccEECCc-cccccccC
Confidence            88888765 45555432 55555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.81  E-value=0.0071  Score=24.25  Aligned_cols=9  Identities=44%  Similarity=0.542  Sum_probs=3.0

Q ss_pred             cEEEcCCCc
Q psy1563          43 RILALGRNM   51 (152)
Q Consensus        43 ~~l~l~~n~   51 (152)
                      +.|++++|.
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG2120|consensus

Probab=95.75  E-value=0.00055  Score=49.44  Aligned_cols=14  Identities=29%  Similarity=0.259  Sum_probs=6.5

Q ss_pred             CCccCcEEEcCCCc
Q psy1563          38 SLKKLRILALGRNM   51 (152)
Q Consensus        38 ~~~~L~~l~l~~n~   51 (152)
                      +|+.|+.|++++|.
T Consensus       258 scs~L~~LNlsWc~  271 (419)
T KOG2120|consen  258 SCSRLDELNLSWCF  271 (419)
T ss_pred             hhhhHhhcCchHhh
Confidence            34444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.01  Score=25.38  Aligned_cols=15  Identities=33%  Similarity=0.277  Sum_probs=7.7

Q ss_pred             CcEEEccCCcccccc
Q psy1563          20 NTKLSLSTNLIEKIS   34 (152)
Q Consensus        20 l~~L~l~~n~l~~~~   34 (152)
                      |++|++++|+++.+|
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            455555555555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.07  E-value=0.049  Score=39.26  Aligned_cols=109  Identities=19%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             CCCCCcEEEccCCccccc-----c-CCcCCccCcEEEcCCCcccc----c--------cCccccccccceeeccccccC-
Q psy1563          16 GPNPNTKLSLSTNLIEKI-----S-GLMSLKKLRILALGRNMIKT----F--------TGLEPLGDCLEELWISYNFIE-   76 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~-----~-~l~~~~~L~~l~l~~n~~~~----~--------~~~~~~~~~L~~l~l~~n~~~-   76 (152)
                      .+..++.+++++|.|...     . .+.+-.+|+...++.-....    +        +.+..+ |+++..++|+|.+. 
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkc-p~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKC-PRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcC-CcceeeeccccccCc
Confidence            366788889998888532     2 44555566666666543331    1        223333 37777777777653 


Q ss_pred             CccC-----CCCCCcccEEEcCCCccCCccc------------ccccCCCCCccEEEecCCCCccc
Q psy1563          77 KTKG-----IGSLKKLKVLYMCHNSVKEWGE------------LNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        77 ~l~~-----~~~~~~L~~l~l~~n~i~~~~~------------~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      .++.     +..-+.+.+|.+++|.+..+.-            .....+-|.|+.+..+.|.+...
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng  172 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG  172 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC
Confidence            2221     4556677777777776542110            01123355666666666666543

>KOG2120|consensus

Probab=94.90  E-value=0.0022  Score=46.43  Aligned_cols=103  Identities=18%  Similarity=0.193  Sum_probs=47.2

Q ss_pred             CCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCc-ccccc---CccccccccceeeccccccCCc-cC--CCC-CCc
Q psy1563          17 PNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNM-IKTFT---GLEPLGDCLEELWISYNFIEKT-KG--IGS-LKK   86 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~-~~~~~---~~~~~~~~L~~l~l~~n~~~~l-~~--~~~-~~~   86 (152)
                      |.+|+.|.+.++++... - .+.+-..|..++++++. +++..   -+..+. .|..|+++++..+.- ..  +.+ -++
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs-~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS-RLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh-hHhhcCchHhhccchhhhHHHhhhchh
Confidence            45555555555555432 1 34444556666666652 33221   122333 666677776654321 11  111 134


Q ss_pred             ccEEEcCCCc--cCCcccccc-cCCCCCccEEEecCCC
Q psy1563          87 LKVLYMCHNS--VKEWGELNK-INDCPVLEDLVFCGNP  121 (152)
Q Consensus        87 L~~l~l~~n~--i~~~~~~~~-~~~l~~L~~l~l~~n~  121 (152)
                      ++.|+++++.  +.+- .+.. .+.++++.+||+++|.
T Consensus       288 l~~LNlsG~rrnl~~s-h~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKS-HLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             hhhhhhhhhHhhhhhh-HHHHHHHhCCceeeecccccc
Confidence            5555555441  1111 1111 1346666666666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.95  E-value=0.14  Score=39.09  Aligned_cols=62  Identities=18%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             CcCCccCcEEEcCCCccccccCccccccccceeecccc-ccCCccCCCCCCcccEEEcCCC-ccCCcc
Q psy1563          36 LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYN-FIEKTKGIGSLKKLKVLYMCHN-SVKEWG  101 (152)
Q Consensus        36 l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n-~~~~l~~~~~~~~L~~l~l~~n-~i~~~~  101 (152)
                      +..+.++..|++++|.++.+|.   +.++|+.|.++++ .++.+|.. -..+|+.|.+++| .+..+|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCcccccccc
Confidence            4457889999999999988884   3347999999874 45555541 1358899999888 666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.38  E-value=0.08  Score=23.40  Aligned_cols=17  Identities=24%  Similarity=0.313  Sum_probs=9.8

Q ss_pred             CCCcEEEccCCcccccc
Q psy1563          18 NPNTKLSLSTNLIEKIS   34 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~   34 (152)
                      ++|+.|++++|+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45566666666665554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.38  E-value=0.08  Score=23.40  Aligned_cols=17  Identities=24%  Similarity=0.313  Sum_probs=9.8

Q ss_pred             CCCcEEEccCCcccccc
Q psy1563          18 NPNTKLSLSTNLIEKIS   34 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~   34 (152)
                      ++|+.|++++|+++.+|
T Consensus         2 ~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        2 PNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCEEECCCCcCCcCC
Confidence            45566666666665554

>smart00446 LRRcap occurring C-terminal to leucine-rich repeats

Probab=93.00  E-value=0.11  Score=23.20  Aligned_cols=21  Identities=38%  Similarity=0.694  Sum_probs=18.3

Q ss_pred             HHHHHHHHhCCCcccccCccc
Q psy1563         130 AYRVEIKKRLPRLKKLDGEVL  150 (152)
Q Consensus       130 ~~~~~~~~~l~~L~~l~~~~~  150 (152)
                      .||..++..+|+|+.||....
T Consensus         3 ~YR~~Vi~~LPqL~~LD~~~~   23 (26)
T smart00446        3 HYREKVIRLLPQLRKLDXXXX   23 (26)
T ss_pred             cHHHHHHHHCCccceeccccc
Confidence            789999999999999997643

A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=91.61  E-value=0.2  Score=22.43  Aligned_cols=16  Identities=44%  Similarity=0.470  Sum_probs=8.3

Q ss_pred             CCCcEEEccCCccccc
Q psy1563          18 NPNTKLSLSTNLIEKI   33 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~   33 (152)
                      .+|+.|+++.|.|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3455555555555444

>KOG0473|consensus

Probab=91.21  E-value=0.005  Score=43.18  Aligned_cols=87  Identities=15%  Similarity=0.066  Sum_probs=60.8

Q ss_pred             CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcccccccCCCCCc
Q psy1563          35 GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVL  112 (152)
Q Consensus        35 ~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L  112 (152)
                      .+......+.||++.|++..+. .+..++ ++..++++.|.+..+|. .+....+..+.+.+|..+-.|.  .++..+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~--s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK--SQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc--cccccCCc
Confidence            4556677788888888776665 455555 78888888888776653 5555666666777777766553  55667788


Q ss_pred             cEEEecCCCCcc
Q psy1563         113 EDLVFCGNPIVE  124 (152)
Q Consensus       113 ~~l~l~~n~~~~  124 (152)
                      +.++.-++++..
T Consensus       114 k~~e~k~~~~~~  125 (326)
T KOG0473|consen  114 KKNEQKKTEFFR  125 (326)
T ss_pred             chhhhccCcchH
Confidence            888888887664

>KOG3864|consensus

Probab=90.84  E-value=0.077  Score=36.41  Aligned_cols=36  Identities=17%  Similarity=0.110  Sum_probs=18.4

Q ss_pred             CCcccEEEcCCC-ccCCcccccccCCCCCccEEEecCC
Q psy1563          84 LKKLKVLYMCHN-SVKEWGELNKINDCPVLEDLVFCGN  120 (152)
Q Consensus        84 ~~~L~~l~l~~n-~i~~~~~~~~~~~l~~L~~l~l~~n  120 (152)
                      .++|+.|+++.| .|++.. +..+..+++|+.+.+.+=
T Consensus       150 ~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             ccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCc
Confidence            345555665555 455543 334455555555555443

>KOG3864|consensus

Probab=90.30  E-value=0.11  Score=35.72  Aligned_cols=77  Identities=21%  Similarity=0.330  Sum_probs=52.1

Q ss_pred             ccceeeccccccCCc--cCCCCCCcccEEEcCCC-ccCCcccccccC-CCCCccEEEecCCCCccccchhHHHHHHHHhC
Q psy1563          64 CLEELWISYNFIEKT--KGIGSLKKLKVLYMCHN-SVKEWGELNKIN-DCPVLEDLVFCGNPIVENLEESAYRVEIKKRL  139 (152)
Q Consensus        64 ~L~~l~l~~n~~~~l--~~~~~~~~L~~l~l~~n-~i~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l  139 (152)
                      .++.++.++..|...  .-+..++.++.+.+.++ ++.++.. ..+. -.++|+.|++++|+-...-   .+  .-+.++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~---GL--~~L~~l  175 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDG---GL--ACLLKL  175 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechh---HH--HHHHHh
Confidence            578888888877643  44778889999999888 6776652 2333 3789999999999654322   11  125566


Q ss_pred             CCccccc
Q psy1563         140 PRLKKLD  146 (152)
Q Consensus       140 ~~L~~l~  146 (152)
                      ++|+.|.
T Consensus       176 knLr~L~  182 (221)
T KOG3864|consen  176 KNLRRLH  182 (221)
T ss_pred             hhhHHHH
Confidence            6666553

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.00  E-value=0.24  Score=22.18  Aligned_cols=18  Identities=28%  Similarity=0.329  Sum_probs=12.4

Q ss_pred             CcccEEEcCCCccCCccc
Q psy1563          85 KKLKVLYMCHNSVKEWGE  102 (152)
Q Consensus        85 ~~L~~l~l~~n~i~~~~~  102 (152)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            356777777777777765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.42  E-value=0.51  Score=20.24  Aligned_cols=12  Identities=42%  Similarity=0.551  Sum_probs=4.7

Q ss_pred             cCcEEEcCCCcc
Q psy1563          41 KLRILALGRNMI   52 (152)
Q Consensus        41 ~L~~l~l~~n~~   52 (152)
                      +|++|++++|.+
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            444445544444

...

>KOG3763|consensus

Probab=85.83  E-value=0.49  Score=37.21  Aligned_cols=59  Identities=32%  Similarity=0.298  Sum_probs=35.5

Q ss_pred             CCCCCcEEEccCCccccccCC----cCCccCcEEEcCCC--cccc---ccCccccccccceeeccccccC
Q psy1563          16 GPNPNTKLSLSTNLIEKISGL----MSLKKLRILALGRN--MIKT---FTGLEPLGDCLEELWISYNFIE   76 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~~l----~~~~~L~~l~l~~n--~~~~---~~~~~~~~~~L~~l~l~~n~~~   76 (152)
                      +.+.+..+.+++|++..++.+    ...|++.+|++++|  .+..   ++.+..+  .|+.+.+.+|++.
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l--~Leel~l~GNPlc  283 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL--PLEELVLEGNPLC  283 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC--CHHHeeecCCccc
Confidence            456677777777777665422    25577777777777  3332   2233332  5777777777653

>KOG1947|consensus

Probab=85.40  E-value=0.69  Score=35.35  Aligned_cols=126  Identities=21%  Similarity=0.209  Sum_probs=73.6

Q ss_pred             CCCCcEEEccCC-cccc--c-cCCcCCccCcEEEcCCC--cccccc----Cccccccccceeeccccc-cCCc--cC-CC
Q psy1563          17 PNPNTKLSLSTN-LIEK--I-SGLMSLKKLRILALGRN--MIKTFT----GLEPLGDCLEELWISYNF-IEKT--KG-IG   82 (152)
Q Consensus        17 l~~l~~L~l~~n-~l~~--~-~~l~~~~~L~~l~l~~n--~~~~~~----~~~~~~~~L~~l~l~~n~-~~~l--~~-~~   82 (152)
                      ++.++.+.+... .+..  + +....++.|+.++++++  .+...+    .+....+.++.++++.+. +++.  .. ..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            566666666544 3332  2 24556788888888873  111111    122222478888888876 4433  22 23


Q ss_pred             CCCcccEEEcCCCc-cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          83 SLKKLKVLYMCHNS-VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        83 ~~~~L~~l~l~~n~-i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      .+++|+.+.+.++. +++.........++.|+.++++++.....   ..+... ...+++++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d---~~l~~~-~~~c~~l~~l~  327 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD---SGLEAL-LKNCPNLRELK  327 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH---HHHHHH-HHhCcchhhhh
Confidence            47889998877775 67654333334588899999998866522   133333 45577666543

>KOG1947|consensus

Probab=81.47  E-value=0.9  Score=34.73  Aligned_cols=107  Identities=28%  Similarity=0.305  Sum_probs=66.6

Q ss_pred             CCccCcEEEcCCC-cccc--ccCccccccccceeecccc-c-cCCcc-----CCCCCCcccEEEcCCCc-cCCccccccc
Q psy1563          38 SLKKLRILALGRN-MIKT--FTGLEPLGDCLEELWISYN-F-IEKTK-----GIGSLKKLKVLYMCHNS-VKEWGELNKI  106 (152)
Q Consensus        38 ~~~~L~~l~l~~n-~~~~--~~~~~~~~~~L~~l~l~~n-~-~~~l~-----~~~~~~~L~~l~l~~n~-i~~~~~~~~~  106 (152)
                      .++.++.+.+..+ .++.  +..+....+.|+.++++.+ . ++..+     ....+.+++.++++.+. +++... ..+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence            3567777777766 3343  2223333348999999873 1 11111     13466889999999886 776543 233


Q ss_pred             C-CCCCccEEEecCCC-CccccchhHHHHHHHHhCCCcccccCccc
Q psy1563         107 N-DCPVLEDLVFCGNP-IVENLEESAYRVEIKKRLPRLKKLDGEVL  150 (152)
Q Consensus       107 ~-~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l~~L~~l~~~~~  150 (152)
                      . .++.|+.+.+.++. +++     .-...+...++.|+.|+...+
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~-----~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTD-----EGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             HhhCCCcceEccCCCCccch-----hHHHHHHHhcCcccEEeeecC
Confidence            3 38889999977776 443     223445678888998876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
1ds9_A	198	Solution Structure Of Chlamydomonas Outer Arm Dynei		1e-31
1m9l_A	199	Relaxation-Based Refined Structure Of Chlamydomonas		1e-31

>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 198

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 86/129 (66%), Gaps = 4/129 (3%)
Query: 23  LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG 82
           L+LSTN IEKIS L  ++ LRIL+LGRN+IK    L+ + D LEELWISYN I    GI 
Sbjct: 53  LALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 112
Query: 83  SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV----ENLEESAYRVEIKKR 138
            L  L+VLYM +N +  WGE++K+     LEDL+  GNP+     EN   S YR+E+ KR
Sbjct: 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172
Query: 139 LPRLKKLDG 147
           LP LKKLDG
Sbjct: 173 LPNLKKLDG 181

>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 199

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/129 (53%), Positives = 86/129 (66%), Gaps = 4/129 (3%)
Query: 23  LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG 82
           L+LSTN IEKIS L  ++ LRIL+LGRN+IK    L+ + D LEELWISYN I    GI 
Sbjct: 54  LALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE 113
Query: 83  SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV----ENLEESAYRVEIKKR 138
            L  L+VLYM +N +  WGE++K+     LEDL+  GNP+     EN   S YR+E+ KR
Sbjct: 114 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 173
Query: 139 LPRLKKLDG 147
           LP LKKLDG
Sbjct: 174 LPNLKKLDG 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-22
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score =  125 bits (315), Expect = 4e-37
 Identities = 67/132 (50%), Positives = 87/132 (65%), Gaps = 4/132 (3%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
             L+LSTN IEKIS L  ++ LRIL+LGRN+IK    L+ + D LEELWISYN I    G
Sbjct: 51  KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESA----YRVEIK 136
           I  L  L+VLYM +N +  WGE++K+     LEDL+  GNP+  + +E+     YR+E+ 
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

Query: 137 KRLPRLKKLDGE 148
           KRLP LKKLDG 
Sbjct: 171 KRLPNLKKLDGM 182

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 92.1 bits (228), Expect = 1e-22
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 17  PNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTF-TGLEPLGDCLEELWISYNFI 75
                 L L+   +  +  L  L  +  L L  N ++     L  L  CLE L  S N +
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR-CLEVLQASDNAL 498

Query: 76  EKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEI 135
           E   G+ +L +L+ L +C+N +++   +  +  CP L  L   GN +    +E   +  +
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC---QEEGIQERL 555

Query: 136 KKRLPRLKKLD 146
            + LP +  + 
Sbjct: 556 AEMLPSVSSIL 566

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 88.5 bits (219), Expect = 2e-22
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 18  NPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK 77
           + + + +L    +     L++     +L     M  T   +E     L  L +S N + +
Sbjct: 126 DGSQQ-ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYR 184

Query: 78  TKGIGSL----KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL-EESAYR 132
              + S+      LK+L +  N +K   EL+KI     LE+L   GN + +   ++S Y 
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYI 243

Query: 133 VEIKKRLPRLKKLDGEVLP 151
             I++R P+L +LDG  LP
Sbjct: 244 SAIRERFPKLLRLDGHELP 262

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 85.9 bits (213), Expect = 4e-22
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 21  TKLSLSTNLIEKISGLMS-LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
            +L L    I  I  L + L +   +    N I+   G   L   L+ L ++ N I +  
Sbjct: 22  RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL-RRLKTLLVNNNRICRIG 80

Query: 80  GI--GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKK 137
                +L  L  L + +NS+ E G+L+ +     L  L    NP+     +  YR+ +  
Sbjct: 81  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT---NKKHYRLYVIY 137

Query: 138 RLPRLKKLDGE 148
           ++P+++ LD +
Sbjct: 138 KVPQVRVLDFQ 148

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 76.3 bits (188), Expect = 1e-18
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 10/152 (6%)

Query: 1   MEGEEREKENLYKFKGPNPNTKLSL---STNLIEKISGLMSLKKLRILALGRNMIKTFTG 57
           ME   R    L + + P+   +L L    +N  +        ++L  L+     + +   
Sbjct: 1   MEMGRRIHLEL-RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN 59

Query: 58  LEPLGDCLEELWISYNFIEKTKGI--GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDL 115
           L  L   L++L +S N +     +       L  L +  N +K+   +  +     L+ L
Sbjct: 60  LPKLNK-LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118

Query: 116 VFCGNPIVENLEESAYRVEIKKRLPRLKKLDG 147
                 +      + YR  + K LP+L  LDG
Sbjct: 119 DLFNCEVT---NLNDYRENVFKLLPQLTYLDG 147

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.2 bits (197), Expect = 2e-18
 Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
             LSL  N I  I+GL+ L +L  L LG N I   T L  L   L+ L +  N I     
Sbjct: 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL-TKLDTLSLEDNQISDIVP 170

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
           +  L KL+ LY+  N + +   L  + +   L+ L       +                 
Sbjct: 171 LAGLTKLQNLYLSKNHISDLRALAGLKN---LDVLELFSQECLNKPI---NHQSNLVVPN 224

Query: 141 RLKKLDG 147
            +K  DG
Sbjct: 225 TVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 5e-16
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            ++  + + I+ + G+  L  +  L L  N +     L  L + L  L++  N I+    
Sbjct: 46  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKN-LGWLFLDENKIKDLSS 104

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           +  LKKLK L + HN +    ++N +   P LE L    N I  +  L            
Sbjct: 105 LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDITVLSR---------- 151

Query: 139 LPRLKKLD 146
           L +L  L 
Sbjct: 152 LTKLDTLS 159

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 2e-14
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            K +L    +        L  +  +    + IK+  G++ L + + +L+++ N +   K 
Sbjct: 24  IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLNGNKLTDIKP 82

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           + +LK L  L++  N +K   +L+ + D   L+ L    N I  +  L            
Sbjct: 83  LTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISDINGLVH---------- 129

Query: 139 LPRLKKLD 146
           LP+L+ L 
Sbjct: 130 LPQLESLY 137

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.0 bits (155), Expect = 7e-13
 Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            +    +  I++I    +  +     L +  +        L + ++++  + + I+  +G
Sbjct: 2   GETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQG 60

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           I  L  +  L++  N + +   L        L  L    N I  + +L++          
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTN---LKNLGWLFLDENKIKDLSSLKD---------- 107

Query: 139 LPRLKKLD 146
           L +LK L 
Sbjct: 108 LKKLKSLS 115

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 75.9 bits (187), Expect = 2e-18
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 23  LSLSTNLIEKISGLMS-LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           L    +   KI GL +    L  L+L    + + + L  L   L++L +S N I     +
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKL-PKLKKLELSENRIFGGLDM 89

Query: 82  --GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRL 139
               L  L  L +  N +K+   L  +     L+ L      +      + YR  + K L
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT---NLNDYRESVFKLL 146

Query: 140 PRLKKLDG 147
           P+L  LDG
Sbjct: 147 PQLTYLDG 154

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 7e-16
 Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 24/150 (16%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            +L LS N I  +S L  L KL  L++ RN +K   G+     CL  L++  N +  T  
Sbjct: 66  KELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA--CLSRLFLDNNELRDTDS 123

Query: 81  IGSLKKLKVLYMCHNSVKEWGEL-------------NKIND------CPVLEDLVFCGNP 121
           +  LK L++L + +N +K    L             N+I +         +  +   G  
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183

Query: 122 IVENLEESAYRVEIKKRLPRLKKLDGEVLP 151
            V    E             +K  DG  + 
Sbjct: 184 CV---NEPVKYQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 17/128 (13%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            K +L    +  +     L  ++      + I++  G++   + L+EL +S+N I     
Sbjct: 22  VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTN-LKELHLSHNQISDLSP 80

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           +  L KL+ L +  N +K    +        L  L    N +   ++L            
Sbjct: 81  LKDLTKLEELSVNRNRLKNLNGIPSAC----LSRLFLDNNELRDTDSLIH---------- 126

Query: 139 LPRLKKLD 146
           L  L+ L 
Sbjct: 127 LKNLEILS 134

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 25  LSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSL 84
                I ++     L       LG+  +      + L   ++      + I+   G+   
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSG-VQNFNGDNSNIQSLAGMQFF 62

Query: 85  KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLE 127
             LK L++ HN +    +L+ + D   LE+L    N +  +  + 
Sbjct: 63  TNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGIP 104

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 3e-15
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
             L L  N I  IS L  L  L+ L++G   +   T L  L   L  L    N I     
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK-LTTLKADDNKISDISP 190

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
           + SL  L  +++ +N +    +++ + +   L  +      I     +  +         
Sbjct: 191 LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPN 244

Query: 141 RLKKLDGEVLP 151
            +K   G  + 
Sbjct: 245 VVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
           T+L LS N ++ +S +  L+ ++ L L    I   T L  L   L+ L++  N I     
Sbjct: 88  TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL-SNLQVLYLDLNQITNISP 146

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
           +  L  L+ L + +  V    +L  + +   L  L    N I
Sbjct: 147 LAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
             L L  N I  ++ L +L K+  L L  N +K  + +  L   ++ L ++   I     
Sbjct: 66  IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS-IKTLDLTSTQITDVTP 124

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           +  L  L+VLY+  N +     ++ +     L+ L      +  +  L            
Sbjct: 125 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVSDLTPLAN---------- 171

Query: 139 LPRLKKLD 146
           L +L  L 
Sbjct: 172 LSKLTTLK 179

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 4e-13
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
           T LS     +  I G+  L  L  L L  N I     L+ L   + EL +S N ++    
Sbjct: 44  TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTK-ITELELSGNPLKNVSA 102

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           I  L+ +K L +    +    ++  +     L+ L    N I  +  L            
Sbjct: 103 IAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLNQITNISPLAG---------- 149

Query: 139 LPRLKKLD 146
           L  L+ L 
Sbjct: 150 LTNLQYLS 157

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            K++   + +        L  +  L+     + T  G++ L + L  L +  N I     
Sbjct: 22  IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN-LIGLELKDNQITDLAP 80

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
           + +L K+  L +  N +K    ++ I     ++ L      I
Sbjct: 81  LKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQI 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            ++  + + I+ + G+  L  +  L L  N +     L  L   L  L++  N ++    
Sbjct: 49  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANL-KNLGWLFLDENKVKDLSS 107

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           +  LKKLK L + HN +    ++N +   P LE L    N I  +  L            
Sbjct: 108 LKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDITVLSR---------- 154

Query: 139 LPRLKKLD 146
           L +L  L 
Sbjct: 155 LTKLDTLS 162

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 35/171 (20%), Positives = 53/171 (30%), Gaps = 43/171 (25%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGL-------------------EPL 61
           TKL L+ N +  I  L +LK L  L L  N +K  + L                     L
Sbjct: 71  TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 62  GDC--LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGEL-------------NKI 106
                LE L++  N I     +  L KL  L +  N + +   L             N I
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190

Query: 107 ND------CPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLP 151
           +D         L+ L       +    +             +K  DG ++ 
Sbjct: 191 SDLRALAGLKNLDVLELFSQECL---NKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            K +L    +        L  +  +    + IK+  G++ L + + +L+++ N +   K 
Sbjct: 27  IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLNGNKLTDIKP 85

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           + +LK L  L++  N VK   +L+ + D   L+ L    N I  +  L            
Sbjct: 86  LANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDINGLVH---------- 132

Query: 139 LPRLKKLD 146
           LP+L+ L 
Sbjct: 133 LPQLESLY 140

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 18/129 (13%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 20  NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
            ++       I++I    +  +     L +  +        L + ++++  + + I+  +
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ 62

Query: 80  GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKK 137
           GI  L  +  L++  N +    ++  + +   L  L    N +  + +L++         
Sbjct: 63  GIQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSSLKD--------- 110

Query: 138 RLPRLKKLD 146
            L +LK L 
Sbjct: 111 -LKKLKSLS 118

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 3e-14
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
              +   N I  I+ + ++ +L  L +G N I   T L PL +   L  L I  N I   
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKI---TDLSPLANLSQLTWLEIGTNQISDI 258

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
             +  L KLK+L +  N +    +++ +N+   L  L    N +     E      I   
Sbjct: 259 NAVKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDME-----VIGG- 309

Query: 139 LPRLKKLD 146
           L  L  L 
Sbjct: 310 LTNLTTLF 317

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 4e-13
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
             L+++ + ++ ++ + +L  L  L+L  N I+  + L  L   L       N I     
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYFTAYVNQITDITP 216

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           + ++ +L  L + +N +    +L+ + +   L  L    N I  +  +++          
Sbjct: 217 VANMTRLNSLKIGNNKIT---DLSPLANLSQLTWLEIGTNQISDINAVKD---------- 263

Query: 139 LPRLKKLD 146
           L +LK L+
Sbjct: 264 LTKLKMLN 271

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 4e-13
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT-- 78
           T L + TN I  I+ +  L KL++L +G N I   + L  L   L  L+++ N +     
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQ-LNSLFLNNNQLGNEDM 304

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
           + IG L  L  L++  N +    ++  +     ++   F    I
Sbjct: 305 EVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 4e-12
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 15/128 (11%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
           TKL ++   +  I G+  L  L  L L  N I   T + PL +   L  L+I  N I   
Sbjct: 47  TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI---TDISPLSNLVKLTNLYIGTNKITDI 103

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
             + +L  L+ LY+  +++    +++ + +   +  L    N  + +L   +        
Sbjct: 104 SALQNLTNLRELYLNEDNIS---DISPLANLTKMYSLNLGANHNLSDLSPLSN------- 153

Query: 139 LPRLKKLD 146
           +  L  L 
Sbjct: 154 MTGLNYLT 161

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYN-FIEK 77
           T L + TN I  IS L +L  LR L L  + I   + + PL +   +  L +  N  +  
Sbjct: 91  TNLYIGTNKITDISALQNLTNLRELYLNEDNI---SDISPLANLTKMYSLNLGANHNLSD 147

Query: 78  TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
              + ++  L  L +  + VK   ++  I +   L  L    N I
Sbjct: 148 LSPLSNMTGLNYLTVTESKVK---DVTPIANLTDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            +  L    +  +     L+ +  L +    + +  G+E L + LE L ++ N I     
Sbjct: 25  IRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTN-LEYLNLNGNQITDISP 83

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI--VENLEESAYRVEIKKR 138
           + +L KL  LY+  N +    +++ + +   L +L    + I  +  L            
Sbjct: 84  LSNLVKLTNLYIGTNKIT---DISALQNLTNLRELYLNEDNISDISPLAN---------- 130

Query: 139 LPRLKKLD 146
           L ++  L+
Sbjct: 131 LTKMYSLN 138

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 5e-11
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
             L+     I +I     L +     L +  +   T +    +   + +L ++   +   
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASV---TDVVTQEELESITKLVVAGEKVASI 59

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
           +GI  L  L+ L +  N +    +++ +++   L +L    N I +        +   + 
Sbjct: 60  QGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKITD--------ISALQN 108

Query: 139 LPRLKKLD 146
           L  L++L 
Sbjct: 109 LTNLRELY 116

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
             L++ +N I  IS L +L +L  L L  N +     +E +G    L  L++S N I   
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHITDI 326

Query: 79  KGIGSLKKLKVLYMCHNSVKE 99
           + + SL K+      +  +K+
Sbjct: 327 RPLASLSKMDSADFANQVIKK 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
             L  + N I  I+ L  L  L  L+L  N +K    L  L   L +L ++ N I     
Sbjct: 202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAP 260

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
           +  L KL  L +  N +     ++ +     L +L    N +
Sbjct: 261 LSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQL 299

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.9 bits (164), Expect = 5e-14
 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
           T L L+ N I  ++ L  L KL  L LG N I   + L  L   L  L ++ N +E    
Sbjct: 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL-TALTNLELNENQLEDISP 304

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
           I +LK L  L +  N++    +++ ++    L+ L F  N +
Sbjct: 305 ISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNNKV 343

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
           T L L+ N +E IS + +LK L  L L  N I   + +  L   L+ L+   N +     
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK-LQRLFFYNNKVSDVSS 348

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
           + +L  +  L   HN + +   L        +  L       
Sbjct: 349 LANLTNINWLSAGHNQISDLTPLAN---LTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
            +L +S+N +  IS L  L  L  L    N I   + + PLG    L+EL ++ N ++  
Sbjct: 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQI---SDITPLGILTNLDELSLNGNQLKDI 236

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
             + SL  L  L + +N +     L  ++    L +L    N I
Sbjct: 237 GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQI 277

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 5e-12
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
           T L      I+ I G+  L  L  +    N +   T + PL +   L ++ ++ N I   
Sbjct: 49  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQL---TDITPLKNLTKLVDILMNNNQIADI 105

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
             + +L  L  L + +N +    +++ + +   L  L    N I
Sbjct: 106 TPLANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
            +L LS+N I  IS L  L  L+ L+ G       T L+PL +   LE L IS N +   
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQ----VTDLKPLANLTTLERLDISSNKVSDI 192

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
             +  L  L+ L   +N +    ++  +     L++L   GN + +        +     
Sbjct: 193 SVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKD--------IGTLAS 241

Query: 139 LPRLKKLD 146
           L  L  LD
Sbjct: 242 LTNLTDLD 249

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
           T+++ S N +  I+ L +L KL  + +  N I     + PL +   L  L +  N I   
Sbjct: 71  TQINFSNNQLTDITPLKNLTKLVDILMNNNQI---ADITPLANLTNLTGLTLFNNQITDI 127

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
             + +L  L  L +  N++    +++ ++    L+ L   GN + +
Sbjct: 128 DPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQL-SFGNQVTD 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            K  L    +        L ++  L   R  IK+  G+E L + L ++  S N +     
Sbjct: 27  MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLTDITP 85

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
           + +L KL  + M +N +    ++  + +   L  L    N I +        ++  K L 
Sbjct: 86  LKNLTKLVDILMNNNQIA---DITPLANLTNLTGLTLFNNQITD--------IDPLKNLT 134

Query: 141 RLKKLD 146
            L +L+
Sbjct: 135 NLNRLE 140

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 20  NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
            +        I +I    +L +     LG+  +        L   +  L      I+   
Sbjct: 4   GSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGIKSID 62

Query: 80  GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
           G+  L  L  +   +N +    ++  + +   L D++   N I
Sbjct: 63  GVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQI 102

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
            +L    N +  +S L +L  +  L+ G N I   T L  L   + +L ++         
Sbjct: 334 QRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR-ITQLGLNDQAWT-NAP 391

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEES 129
           +     + +     N          I+D     +     N      E S
Sbjct: 392 VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVS 440

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFI--EKT 78
           T ++L+   +  ++G+     ++ L +       +  +  L + LE L I    +  +K 
Sbjct: 47  TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSN-LERLRIMGKDVTSDKI 105

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
             +  L  L +L + H++  +   L KIN  P +  +    N  + ++        +K  
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIM------PLKT- 157

Query: 139 LPRLKKLD 146
           LP LK L+
Sbjct: 158 LPELKSLN 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 21  TKLSLSTNLI--EKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYN-FI 75
            +L +    +  +KI  L  L  L +L +  +     + L  +     +  + +SYN  I
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH-DDSILTKINTLPKVNSIDLSYNGAI 149

Query: 76  EKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
                + +L +LK L +  + V    +   I D P L  L      I
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 19/113 (16%)

Query: 38  SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSV 97
           + K      LG++     T  +     L  + ++   +    GI     +K L + +   
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNS--LTYITLANINVTDLTGIEYAHNIKDLTINNIHA 78

Query: 98  KEWGELNKINDCPVLEDLVFCGNPI----VENLEESAYRVEIKKRLPRLKKLD 146
                 N I+    LE L   G  +    + NL            L  L  LD
Sbjct: 79  T---NYNPISGLSNLERLRIMGKDVTSDKIPNLSG----------LTSLTLLD 118

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 19/135 (14%)

Query: 21  TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKT------FTGLEPLGDCLEELWISYN 73
             L LS N +  + S  + L++L  L    + +K       F  L      L  L IS+ 
Sbjct: 81  KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR----NLIYLDISHT 136

Query: 74  FIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
                  GI   L  L+VL M  NS +E    +   +   L  L      + E L  +A+
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAF 195

Query: 132 RVEIKKRLPRLKKLD 146
                  L  L+ L+
Sbjct: 196 N-----SLSSLQVLN 205

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 22/115 (19%)

Query: 42  LRILALGRNMIKT-----FTGLEPLGDCLEELWISYNFIEKTKGIGS-----LKKLKVLY 91
              L L  N +++     F  L  L     +L +S N +   KG  S        LK L 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQL----TKLSLSSNGLS-FKGCCSQSDFGTTSLKYLD 84

Query: 92  MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
           +  N V      +       LE L F  + + +  E S +       L  L  LD
Sbjct: 85  LSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFL-----SLRNLIYLD 132

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 23/140 (16%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
            +L L  N I+ I    L+   KL  L LG N I+     + + L      L EL +  N
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP----TLRELHLDNN 251

Query: 74  FIEK-TKGIGSLKKLKVLYMCHNSVKE-----WGELNKINDCPVLEDLVFCGNPI-VENL 126
            + +   G+  LK L+V+Y+  N++ +     +  +           +    NP+    +
Sbjct: 252 KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 127 EESAYRVEIKKRLPRLKKLD 146
           + + +R      +     + 
Sbjct: 312 QPATFR-----CVTDRLAIQ 326

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK- 77
             L L  N I KI       L+KL+ L + +N +       P    L EL I  N I K 
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS--LVELRIHDNRIRKV 138

Query: 78  TKGI-GSLKKLKVLYMCHNSVKE 99
            KG+   L+ +  + M  N ++ 
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLEN 161

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 14/88 (15%)

Query: 21  TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDC--LEELWISY 72
            +L L  N + ++ +GL  LK L+++ L  N I       F  +           + +  
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 73  NFIEKTKGIGS-----LKKLKVLYMCHN 95
           N +     +       +     +   + 
Sbjct: 304 NPV-PYWEVQPATFRCVTDRLAIQFGNY 330

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 11/131 (8%)

Query: 21  TKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEK 77
             L LS N +  +S   + L++L  L    + +K  +          L  L IS+     
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 78  T--KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEI 135
                   L  L+VL M  NS +E    +   +   L  L      + +    +      
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF----- 490

Query: 136 KKRLPRLKKLD 146
              L  L+ L+
Sbjct: 491 -NSLSSLQVLN 500

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 27/150 (18%), Positives = 43/150 (28%), Gaps = 31/150 (20%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
           +  SL +  IE++         + L L       F  L+     L+ L  + N       
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS--LKRLTFTSNKGGNAFS 342

Query: 81  IGSLKKLKVLYMCHNSVKEWGEL-----------------NKIND-------CPVLEDLV 116
              L  L+ L +  N +   G                   N +            LE L 
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 117 FCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
           F  + + +  E S +       L  L  LD
Sbjct: 403 FQHSNLKQMSEFSVFL-----SLRNLIYLD 427

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 21  TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
             L +S              L  L +L +  N  +     +   +   L  L +S   +E
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 77  K--TKGIGSLKKLKVLYMCHNS 96
           +       SL  L+VL M HN+
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNN 505

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
            KL      +  +    +  LK L+ L +  N+I++F   E   +   LE L +S N I+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 77  KTKG--IGSLKKLKV----LYMCHNSVK--EWGELNKINDCPVLEDLVFCGNPI 122
                 +  L ++ +    L +  N +   + G   +I     L  L    N  
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR----LHKLTLRNNFD 212

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 11/131 (8%)

Query: 21  TKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEK 77
             L LS N    +S   M L++L+ L    + +K  T          L  L ISY   + 
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 78  --TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEI 135
                   L  L  L M  NS K+    N   +   L  L      + E +    +    
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-EQISWGVFD--- 494

Query: 136 KKRLPRLKKLD 146
              L RL+ L+
Sbjct: 495 --TLHRLQLLN 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
           + +SL+   I+ +  +    K + L++ R  +K F  L+     L+ L ++ N    +  
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL--PFLKSLTLTMNKGSISFK 345

Query: 81  IGSLKKLKVLYMCHNS 96
             +L  L  L +  N+
Sbjct: 346 KVALPSLSYLDLSRNA 361

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)

Query: 21  TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
             L +S    +       + L  L  L +  N  K  T      +   L  L +S   +E
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 77  KTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVE 134
           +       +L +L++L M HN++      +  N    L  L    N I E  +       
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRI-ETSKGI----- 539

Query: 135 IKKRLPRLKKLD 146
           ++     L   +
Sbjct: 540 LQHFPKSLAFFN 551

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 21  TKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
           + L L+ N I+  S      L  L  L      +          L      L++L +++N
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI----TLKKLNVAHN 138

Query: 74  FIEKTK---GIGSLKKLKVLYMCHNS 96
           FI   K      +L  L  + + +N 
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNY 164

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
             ++   N +E++  L +L  L  +    N +K    L  L   LE +    N +E+   
Sbjct: 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK---LPDLPLSLESIVAGNNILEELPE 232

Query: 81  IGSLKKLKVLYMCHNSVKE 99
           + +L  L  +Y  +N +K 
Sbjct: 233 LQNLPFLTTIYADNNLLKT 251

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 9e-08
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 10/105 (9%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
             L +S N +EK+  L +   L+I+ +  N +K    L  L   LE +    N +E+   
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK---LPDLPPSLEFIAAGNNQLEELPE 190

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPV-LEDLVFCGNPIVE 124
           + +L  L  +Y  +NS      L K+ D P+ LE +V   N + E
Sbjct: 191 LQNLPFLTAIYADNNS------LKKLPDLPLSLESIVAGNNILEE 229

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 21  TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
             L  S N + ++     SLK L +       +        L   LE L +S N +EK  
Sbjct: 94  ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQLEKLP 147

Query: 80  GIGSLKKLKVLYMCHNSVKE 99
            + +   LK++ + +NS+K+
Sbjct: 148 ELQNSSFLKIIDVDNNSLKK 167

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 21/132 (15%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNFI 75
           T L L  N +   + L++   L  + L  N ++      F  ++     LE L+IS N +
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR----LERLYISNNRL 284

Query: 76  EK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVE 134
                    +  LKVL + HN +              LE+L    N IV  L+ S     
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVT-LKLST---- 337

Query: 135 IKKRLPRLKKLD 146
                  LK L 
Sbjct: 338 ----HHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 29/145 (20%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLE------------PL 61
           T LS+S N +E+I      +   L+ L L  N +          L              +
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203

Query: 62  GDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121
              +EEL  S+N I   +G     +L +L + HN++    +   + + P L ++    N 
Sbjct: 204 PIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNE 259

Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
           + E +    +      ++ RL++L 
Sbjct: 260 L-EKIMYHPFV-----KMQRLERLY 278

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
           T L L  N +  +      +  KL  L++  N ++     TF         L+ L +S N
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS----LQNLQLSSN 175

Query: 74  FIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
            +     +  +  L    + +N       L+ +     +E+L    N I
Sbjct: 176 RLT-HVDLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
              ++S NL+  ++  +++++L       N I       P+   L  L + +N +  T  
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELD---ASHNSINVVR--GPVNVELTILKLQHNNLTDTAW 243

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
           + +   L  + + +N +++    +       LE L    N +   L          + +P
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRL-VALNLYG------QPIP 295

Query: 141 RLKKLD 146
            LK LD
Sbjct: 296 TLKVLD 301

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 20  NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYNF 74
           +  + + T  +      ++L   +I+    + ++                +E L ++   
Sbjct: 25  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR----QVELLNLNDLQ 80

Query: 75  IE--KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
           IE   T        ++ LYM  N+++     +   + P+L  LV   N +  +L    + 
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDL-SSLPRGIFH 138

Query: 133 VEIKKRLPRLKKLD 146
                  P+L  L 
Sbjct: 139 -----NTPKLTTLS 147

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 21  TKLSLSTNLIEKISGLM--SLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
             + L+ N I  +  L      +++ L L  N I T    E       LE L + YNFI 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 77  KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIK 136
             KG     KLK L +  N +   G   +      +  +    N +   +E++       
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKL-VLIEKAL------ 233

Query: 137 KRLPRLKKLD 146
           +    L+  D
Sbjct: 234 RFSQNLEHFD 243

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 27/145 (18%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPL-----------------GD 63
             L+LS+N++ +   L SL  LR L L  N ++       +                 G 
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 64  CLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121
             + ++++ N I   +    G   +++ L +  N +              LE L    N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
           I  +++             +LK LD
Sbjct: 181 I-YDVKGQVV-------FAKLKTLD 197

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMI----KTFTGLEPLGDCLEELWISYNFIE 76
             L+L  N I  + G +   KL+ L L  N +      F         +  + +  N + 
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG----VTWISLRNNKLV 227

Query: 77  K-TKGIGSLKKLKVLYMCHN 95
              K +   + L+   +  N
Sbjct: 228 LIEKALRFSQNLEHFDLRGN 247

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 26/145 (17%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIE 76
               ++ + +++       S   ++ L L  N +   +   L P    LE L +S N + 
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLY 71

Query: 77  KTKGIGSLKKLKVLYMCHNSVKEWGEL----------NKINDCPV-----LEDLVFCGNP 121
           +T  + SL  L+ L + +N V+E              N I+          +++    N 
Sbjct: 72  ETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131

Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
           I   L +            R++ LD
Sbjct: 132 I-TMLRDLDE-----GCRSRVQYLD 150

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 14/134 (10%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTF-TGLEPLGDCLEELWISYNFIE--- 76
             L    N +  +    +  KL  L L  N I+          D +E L  S+N ++   
Sbjct: 576 GLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635

Query: 77  KTKGIGSLKKLKVLYMCHNS----VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
                 S+  +  +   +N      +                +    N I        + 
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI------QKFP 689

Query: 133 VEIKKRLPRLKKLD 146
            E+      +  + 
Sbjct: 690 TELFATGSPISTII 703

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%)

Query: 20  NTKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT 78
           +T++   TN I  I   +  L KL+I+    +     T      D  +         E  
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF---TYDNIAVDWEDANSDYAKQYENE 483

Query: 79  -KGIGSLKKLKVLYMCHNSVKEWGEL-NKINDCPVLEDLVFCGNPIVENLEESAYRVEIK 136
                +LK L  + + +       +L + + D P L+ L    N  +   +  A    + 
Sbjct: 484 ELSWSNLKDLTDVELYNC--PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 137 KRLPRLKKL 145
                  K+
Sbjct: 542 DDEDTGPKI 550

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 29/144 (20%)

Query: 21  TKLSLSTNLIEKI-----------SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEE 67
             L+++ N                    +  K++I  +G N ++ F     L     L  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 68  LWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPI 122
           L   +N +   +  G+  KL  L + +N       + +I          +E L F  N +
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQ------IEEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 123 VENLEESAYRVEIKKRLPRLKKLD 146
                    +      +  +  +D
Sbjct: 632 KYIPNIFNAK-----SVYVMGSVD 650

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 22/143 (15%)

Query: 21  TKLSLSTNLIEKI---SGLMSLKKLRILALGRNMIKTF--TGLEPLGDC----LEELWIS 71
             L  S N ++ I       S+  +  +    N I +        + D        + +S
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 72  YNFIEK--TKGIGSLKKLKVLYMCHNSVKE------WGELNKINDCPVLEDLVFCGNPIV 123
           YN I+K  T+   +   +  + + +N +          +     +  +L  +    N + 
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 124 ENLEESAYRVEIKKRLPRLKKLD 146
              ++          LP L  +D
Sbjct: 742 SLSDDFRAT-----TLPYLSNMD 759

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 26/143 (18%)

Query: 21  TKLSLSTNLIEKI---------SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELW 69
           + + LS NL+  I             +   L  + L  N + + +          L  + 
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 70  ISYNFIEK-TKGIGSLKKLKVLYMCHNSVKEWGELNK-----INDCPVLEDLVFCGNPIV 123
           +SYN          +  +LK   + H    E   + +     I  CP L  L    N I 
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818

Query: 124 ENLEESAYRVEIKKRLPRLKKLD 146
             ++E           P+L  LD
Sbjct: 819 RKVDEKL--------TPQLYILD 833

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 11/138 (7%)

Query: 14  FKGPNPNTKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWI 70
             G      L LS N +  + S  + L++L  L    + +K  +          L  L I
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 71  SYNFIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128
           S+             L  L+VL M  NS +E    +   +   L  L      + E L  
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSP 487

Query: 129 SAYRVEIKKRLPRLKKLD 146
           +A+       L  L+ L+
Sbjct: 488 TAF-----NSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 13/111 (11%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
             L LS   I+ I      SL  L  L L  N I+      F+GL  L    ++L     
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL----QKLVAVET 110

Query: 74  FIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
            +   +   IG LK LK L + HN ++ +      ++   LE L    N I
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIK-------TFTGLEPLGDCLEELWISYN 73
            +L+ ++N        + L  L  L L RN +        +  G       L+ L +S+N
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT----SLKYLDLSFN 383

Query: 74  FIEK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
            +   +     L++L+ L   H+++K+  E +       L  L               + 
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIF- 441

Query: 133 VEIKKRLPRLKKLD 146
                 L  L+ L 
Sbjct: 442 ----NGLSSLEVLK 451

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 28/157 (17%), Positives = 44/157 (28%), Gaps = 31/157 (19%)

Query: 14  FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYN 73
           F      +  SL +  IE++         + L L       F  L+     L+ L  + N
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL--KSLKRLTFTSN 335

Query: 74  FIEKTKGIGSLKKLKVLYMCHNSVKEWGEL-----------------NKINDCPV----- 111
                     L  L+ L +  N +   G                   N +          
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 112 --LEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
             LE L F  + + +  E S +       L  L  LD
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVF-----LSLRNLIYLD 427

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 21  TKLSLSTNLIEKI---SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISY 72
            +L+++ NLI+         +L  L  L L  N I+         L  +      L +S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 73  NFIEK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDL 115
           N +     G     +L  L + +N          I     LE  
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 6/89 (6%)

Query: 14  FKGPNPNTKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELW 69
           F        L +S              L  L +L +  N  +     +   +   L  L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

Query: 70  ISYNFIEK-TKGI-GSLKKLKVLYMCHNS 96
           +S   +E+ +     SL  L+VL M  N 
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYNFI 75
             L+L+   + +I  L  L KL  L L  N +       F GL      L++LW+  + I
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL----MHLQKLWMIQSQI 243

Query: 76  EK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123
           +        +L+ L  + + HN++      +       LE +    NP  
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 19/134 (14%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGR-NMIK-----TFTGLEPLGDCLEELWISY 72
            +L L  N IE I       +  LR L LG    +       F GL      L  L ++ 
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS----NLRYLNLAM 194

Query: 73  NFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
             + +   +  L KL  L +  N +              L+ L    + I + +E +A+ 
Sbjct: 195 CNLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQI-QVIERNAFD 252

Query: 133 VEIKKRLPRLKKLD 146
                 L  L +++
Sbjct: 253 -----NLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 23/136 (16%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWIS-Y 72
             L L  N +  I     + L KL+ L L  N I+      F  +      L  L +   
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP----SLRRLDLGEL 170

Query: 73  NFIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESA 130
             +   ++G    L  L+ L +   +++   E+  +     L++L   GN +   +   +
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL-SAIRPGS 226

Query: 131 YRVEIKKRLPRLKKLD 146
           ++      L  L+KL 
Sbjct: 227 FQ-----GLMHLQKLW 237

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 29/140 (20%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
             L+L  N I+ I       L+ L IL L RN I+T     F GL      L  L +  N
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA----NLNTLELFDN 122

Query: 74  FIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPIVENL 126
            +          L KLK L++ +N       +  I     N  P L  L       +  +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNP------IESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 127 EESAYRVEIKKRLPRLKKLD 146
            E A+       L  L+ L+
Sbjct: 177 SEGAFE-----GLSNLRYLN 191

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 6e-08
 Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 21/132 (15%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNFI 75
           T L L  N +   + L++   L  + L  N ++      F  ++     LE L+IS N +
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR----LERLYISNNRL 290

Query: 76  EK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVE 134
                    +  LKVL + HN +              LE+L    N IV  L+ S     
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVT-LKLST---- 343

Query: 135 IKKRLPRLKKLD 146
                  LK L 
Sbjct: 344 ----HHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
              ++S NL+  ++  +++++L       N I       P+   L  L + +N +  T  
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELD---ASHNSINVVR--GPVNVELTILKLQHNNLTDTAW 249

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLP 140
           + +   L  + + +N +++    +       LE L    N +   L          + +P
Sbjct: 250 LLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRL-VALNLYG------QPIP 301

Query: 141 RLKKLD 146
            LK LD
Sbjct: 302 TLKVLD 307

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
           T L L  N +  +      +  KL  L++  N ++     TF         L+ L +S N
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS----LQNLQLSSN 181

Query: 74  FIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
            +     +  +  L    + +N       L+ +     +E+L    N I
Sbjct: 182 RLT-HVDLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSI 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 29/145 (20%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLE------------PL 61
           T LS+S N +E+I      +   L+ L L  N +          L              +
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209

Query: 62  GDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121
              +EEL  S+N I   +G     +L +L + HN++    +   + + P L ++    N 
Sbjct: 210 PIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNE 265

Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
           + E +    +      ++ RL++L 
Sbjct: 266 L-EKIMYHPFV-----KMQRLERLY 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 27/145 (18%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPL-----------------GD 63
             L+LS+N++ +   L SL  LR L L  N ++       +                 G 
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 64  CLEELWISYNFIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP 121
             + ++++ N I        G   +++ L +  N +              LE L    N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 122 IVENLEESAYRVEIKKRLPRLKKLD 146
           I  +++             +LK LD
Sbjct: 181 I-YDVKGQVV-------FAKLKTLD 197

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 32/148 (21%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMI-----KTFTGLEPLGDCLEELWISYN 73
               ++ + +++       S   ++ L L  N +                 LE L +S N
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF----TKLELLNLSSN 68

Query: 74  FIEKTKGIGSLKKLKVLYMCHNSVKEWGEL----------NKINDCPV-----LEDLVFC 118
            + +T  + SL  L+ L + +N V+E              N I+          +++   
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128

Query: 119 GNPIVENLEESAYRVEIKKRLPRLKKLD 146
            N I   L +            R++ LD
Sbjct: 129 NNKI-TMLRDLDE-----GCRSRVQYLD 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 7e-07
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 21  TKLSLSTNLIEKISGLM--SLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
             + L+ N I  +  L      +++ L L  N I T    E       LE L + YNFI 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 77  KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIK 136
             KG     KLK L +  N +   G   +      +  +    N +   +E++       
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKL-VLIEKAL------ 233

Query: 137 KRLPRLKKLD 146
           +    L+  D
Sbjct: 234 RFSQNLEHFD 243

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMI----KTFTGLEPLGDCLEELWISYNFIE 76
             L+L  N I  + G +   KL+ L L  N +      F         +  + +  N + 
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG----VTWISLRNNKLV 227

Query: 77  K-TKGIGSLKKLKVLYMCHN 95
              K +   + L+   +  N
Sbjct: 228 LIEKALRFSQNLEHFDLRGN 247

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 19/134 (14%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGR-NMIK-----TFTGLEPLGDCLEELWISY 72
            +L L  N IE I       +  L  L LG    ++      F GL      L+ L +  
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF----NLKYLNLGM 205

Query: 73  NFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
             I+    +  L  L+ L M  N   E       +    L+ L    + +   +E +A+ 
Sbjct: 206 CNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQV-SLIERNAFD 263

Query: 133 VEIKKRLPRLKKLD 146
                 L  L +L+
Sbjct: 264 -----GLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 22/115 (19%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNFI 75
             L+L    I+ +  L  L  L  L +  N        +F GL      L++LW+  + +
Sbjct: 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS----LKKLWVMNSQV 254

Query: 76  EK--TKGIGSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPIV 123
                     L  L  L + HN+      L+ +          L +L    NP  
Sbjct: 255 SLIERNAFDGLASLVELNLAHNN------LSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 35/160 (21%), Positives = 49/160 (30%), Gaps = 47/160 (29%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
             L L  N I +I       L  L  L L  N +       F  L      L ELW+  N
Sbjct: 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK----LRELWLRNN 157

Query: 74  FIEK-------------------TKGIGS--------LKKLKVLYMCHNSVKEWGELNKI 106
            IE                     K +          L  LK L +   ++K   ++  +
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNL 214

Query: 107 NDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
                LE+L   GN     +   ++       L  LKKL 
Sbjct: 215 TPLVGLEELEMSGNHF-PEIRPGSFH-----GLSSLKKLW 248

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 18/135 (13%)

Query: 21  TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
             L LS N I  I    L +   L++L L  + I T     F  L      LE L +S N
Sbjct: 29  KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG----SLEHLDLSDN 84

Query: 74  FIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
            +    +   G L  LK L +  N  +  G  +   +   L+ L          +    +
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 132 RVEIKKRLPRLKKLD 146
                  L  L +L+
Sbjct: 145 A-----GLTSLNELE 154

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 21  TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
           T L +S N    +       +K+R L L    I+      P    LE L +S N +    
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT--LEVLDVSNNNL--DS 445

Query: 80  GIGSLKKLKVLYMCHNSVKEWGELNKINDC---PVLEDLVFCGNPIVENLEESAYRVEIK 136
               L +L+ LY+  N       L  + D    PVL  +    N + +++ +  +     
Sbjct: 446 FSLFLPRLQELYISRNK------LKTLPDASLFPVLLVMKISRNQL-KSVPDGIFD---- 494

Query: 137 KRLPRLKKLD 146
            RL  L+K+ 
Sbjct: 495 -RLTSLQKIW 503

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 19/137 (13%)

Query: 21  TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
           T+L L +N I+KI  +  +  K L  L L  N +      T   LE     L+EL +S N
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE----NLQELLLSNN 155

Query: 74  FIEKTK----GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEES 129
            I+  K     I +   LK L +  N +KE+      +    L  L      +  +L E 
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 130 AYRVEIKKRLPRLKKLD 146
              + ++     ++ L 
Sbjct: 215 ---LCLELANTSIRNLS 228

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 13/133 (9%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
             L+L+ N I KI       L  L +L LG N I      +       + E+++SYN   
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 77  KT--KGIGSLKKLKVLYMCHNSVKE-WGELNKINDCPVLEDLVFCGNPIVENLEESAYRV 133
           +        +  L+ L +   ++K      +       L  L    N I  N+ +     
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI-ANINDDML-- 500

Query: 134 EIKKRLPRLKKLD 146
              + L +L+ LD
Sbjct: 501 ---EGLEKLEILD 510

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 13/133 (9%)

Query: 24  SLSTNLIEKISGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNFIEKT 78
            L  +L EK+   ++   +R L+L  + +      TF GL+     L  L +SYN +   
Sbjct: 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN--LTMLDLSYNNLNVV 263

Query: 79  --KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIK 136
                  L +L+  ++ +N+++     + ++    +  L    +   +++  ++      
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 137 ---KRLPRLKKLD 146
              + L  L+ L+
Sbjct: 323 FSFQWLKCLEHLN 335

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 19/137 (13%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-------TFTGLEPLGDCLEELWIS 71
             L++  N I  I       L  L+ L+L  +          TF  L      L  L ++
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP--LHILNLT 389

Query: 72  YNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEES 129
            N I K +      L  L+VL +  N + +     +      + ++    N     L  +
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTRN 448

Query: 130 AYRVEIKKRLPRLKKLD 146
           ++       +P L++L 
Sbjct: 449 SFA-----LVPSLQRLM 460

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 24/142 (16%)

Query: 21  TKLSLSTNLIEKI----SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNF 74
            +L L    ++ +    S    L+ L IL L  N I      + L     LE L + +N 
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNN 515

Query: 75  IEK----------TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
           + +             +  L  L +L +  N   E        D   L+ +    N +  
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNL-N 573

Query: 125 NLEESAYRVEIKKRLPRLKKLD 146
            L  S +          LK L+
Sbjct: 574 TLPASVFN-----NQVSLKSLN 590

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 20/136 (14%)

Query: 21  TKLSLSTNLIEKI-SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYNF 74
            +L L+   + ++ SGL+ L  L+ L L  N  +     + +        L  L I  N 
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF----PSLTHLSIKGNT 336

Query: 75  IE---KTKGIGSLKKLKVLYMCHNSVKEWGELNK-INDCPVLEDLVFCGNPIVENLEESA 130
                 T  + +L+ L+ L + H+ ++     N  + +   L+ L    N    +L+   
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKT-- 393

Query: 131 YRVEIKKRLPRLKKLD 146
              E  K  P+L+ LD
Sbjct: 394 ---EAFKECPQLELLD 406

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 21  TKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
           T L L+   I  I      S  +L  L L  N +        L     L+ L+     I 
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGIS 118

Query: 77  KTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
                 + + K L+ LY+  N +    +L K      L+ L F  N I
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 13/111 (11%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
             L      I  I    L + K L  L LG N I           E     L+ L    N
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK----LKVLDFQNN 163

Query: 74  FIE--KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
            I     + + SL++   L +  N     G      D  V + L F G   
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNF 74
             L+LS +L++  S      L  L+ L L  N        +   L     LE L +S+  
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 75  IEK--TKGIGSLKKLKVLYMCHNS 96
           +         SLK +  + + HN 
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNR 511

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 21  TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTF--TGLEPLGDCLEELWISYNFIE 76
             L  S N++  I  +    L  L  L L R  I        +     L+ L ++ N + 
Sbjct: 36  ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLI 94

Query: 77  K--TKGIGSLKKLKVLYMCHNS 96
                 +   K LK L+     
Sbjct: 95  FMAETALSGPKALKHLFFIQTG 116

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 38/158 (24%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
            KL LS N  E +      +   L  L++  N  +   G   L +   L EL +S++ IE
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 77  K----------------------------TKGIGSLKKLKVLYMCHNSVKEWGELNKIND 108
                                        T+      +L++L +    +K     +   +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 109 CPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
             +L+ L    + + +   E  +       LP L+ L+
Sbjct: 424 LHLLKVLNLSHSLL-DISSEQLFD-----GLPALQHLN 455

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
           T L    + I  ++G+  L  L  L    N I T      L     L  L    N +   
Sbjct: 45  TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL 100

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
             +  L KL  L    N + +      ++  P+L  L    N + E
Sbjct: 101 D-VTPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLTE 141

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 11/108 (10%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
             L      I ++  L    KL  L L    +        +     L+ L      I+  
Sbjct: 300 YLLDCQAAGITELD-LSQNPKLVYLYLNNTELTEL----DVSHNTKLKSLSCVNAHIQDF 354

Query: 79  KGIGSLKKLKVLYMCHNSV----KEWGELNKINDCPVLEDLVFCGNPI 122
             +G +  L   +          KE    N +      + L   GNP+
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
           T L+  TN + K+  +     L  L   RN +        +     L EL    N     
Sbjct: 109 TYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITK 163

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
             +    +L  L    N +    EL+ ++   +L  L    N I
Sbjct: 164 LDVTPQTQLTTLDCSFNKIT---ELD-VSQNKLLNRLNCDTNNI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
           T L  S N I ++  +   K L  L    N I        L     L  L  S N +   
Sbjct: 173 TTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKL-TE 226

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
             +  L +L       N + E      ++    L  L      ++E
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTE----LDVSTLSKLTTLHCIQTDLLE 268

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 20/135 (14%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
             L +  N +  IS      L  L  L L +  + +      + L      L  L + + 
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH----GLIVLRLRHL 186

Query: 74  FIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
            I          L +LKVL + H    +    N       L  L      +   +   A 
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTA-VPYLAV 244

Query: 132 RVEIKKRLPRLKKLD 146
           R      L  L+ L+
Sbjct: 245 R-----HLVYLRFLN 254

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 36/158 (22%), Positives = 54/158 (34%), Gaps = 42/158 (26%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
            +L L+ N++  +      +L  LR L L  N +K      FTGL      L +L IS N
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL----SNLTKLDISEN 114

Query: 74  FIEKTKGI--GSLKKLKVLYMCHNSVKE------WG---------ELNKI--------ND 108
            I          L  LK L +  N +         G         E   +        + 
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 109 CPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD 146
              L  L      I   + + +++     RL RLK L+
Sbjct: 175 LHGLIVLRLRHLNI-NAIRDYSFK-----RLYRLKVLE 206

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 15/119 (12%)

Query: 14  FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLE 66
             G N  T LS++   +  +    +  L  LR L L  N I          L      L+
Sbjct: 221 LYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR----LQ 275

Query: 67  ELWISYNFIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV 123
           E+ +    +          L  L+VL +  N +    E +  +    LE L+   NP+ 
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLETLILDSNPLA 333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 23  LSLSTNLIE---KISGLMSLKKLRILALGRNMI--KTFTGLEPLGDC--LEELWISYNFI 75
           L++S+N ++   K+SG + L  L +L L  N I      G      C  L+ L IS N I
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 76  EKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGN 120
                +     L+ L +  N+      +  + DC  L+ L   GN
Sbjct: 191 SGDVDVSRCVNLEFLDVSSNNFS--TGIPFLGDCSALQHLDISGN 233

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 29/138 (21%), Positives = 45/138 (32%), Gaps = 18/138 (13%)

Query: 21  TKLSLSTNLIEKISG-----LMSLKKLRILALGRNMIKTFTG-LEPLGDC--LEELWISY 72
           T + LS+  +          L+SL  L  L L  +      G +        L  L +S 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH---INGSVSGFKCSASLTSLDLSR 109

Query: 73  NF----IEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128
           N     +     +GS   LK L +  N++   G+++       LE L    N I      
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 129 SAYRVEIKKRLPRLKKLD 146
                 +      LK L 
Sbjct: 170 G---WVLSDGCGELKHLA 184

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 22/134 (16%)

Query: 21  TKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKTFTGLEP-LGDC--LEELWISYNF 74
             L++S N   KISG   +     L  L +  N    F+   P LGDC  L+ L IS N 
Sbjct: 181 KHLAISGN---KISGDVDVSRCVNLEFLDVSSNN---FSTGIPFLGDCSALQHLDISGNK 234

Query: 75  IEKT--KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
           +     + I +  +LK+L +  N     G +  +     L+ L    N     + +    
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFV--GPIPPLP-LKSLQYLSLAENKFTGEIPDF--- 288

Query: 133 VEIKKRLPRLKKLD 146
             +      L  LD
Sbjct: 289 --LSGACDTLTGLD 300

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 21  TKLSLSTNLIE-KI-SGLMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNF 74
             L L  N++E +I   LM +K L  L L  N     TG  P  L +C  L  + +S N 
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFND---LTGEIPSGLSNCTNLNWISLSNNR 501

Query: 75  IEKT--KGIGSLKKLKVLYMCHNS 96
           +     K IG L+ L +L + +NS
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNS 525

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 22/147 (14%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGD--------------- 63
             + L  N I  I       L+KL+ L L  N + T   +  + D               
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 64  -CLEELWISYNFIE---KTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCG 119
                + +S N +E       +  +  L++L +  N           ++ P LE L    
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 120 NPIVENLEESAYRVEIKKRLPRLKKLD 146
           N + +   E+    ++ + L  L+ L 
Sbjct: 461 NML-QLAWETELCWDVFEGLSHLQVLY 486

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 20/144 (13%)

Query: 14  FKGPNPNTKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK------TFTGLEPLGDCL 65
            +  N   +L LS N I  ++      L++L++L LG            F  L      L
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN----L 75

Query: 66  EELWISYNFIEK--TKGIGSLKKLKVLYMCHNSVKEWG-ELNKINDCPVLEDLVFCGNPI 122
             L +  + I          L  L  L +    + +   +     +   L  L    N I
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 123 VENLEESAYRVEIKKRLPRLKKLD 146
                  ++      +L  LK +D
Sbjct: 136 RSLYLHPSFG-----KLNSLKSID 154

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 16/114 (14%)

Query: 21  TKLSLSTNLIEKI---SGLMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISY 72
             L L +             +L  LRIL LG + I       F GL      L EL + +
Sbjct: 51  QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF----HLFELRLYF 106

Query: 73  NFIEK----TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
             +           +LK L  L +  N ++             L+ + F  N I
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 20/141 (14%)

Query: 21  TKLSLSTNLIEKISG-------LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEEL 68
            +L L  N+++              L  L++L L  N +       F+ L      L  L
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT----ALRGL 509

Query: 69  WISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE 128
            ++ N +           L++L +  N +         +    L  L    N  +   E 
Sbjct: 510 SLNSNRLTVLSHNDLPANLEILDISRNQLLAPNP----DVFVSLSVLDITHNKFICECEL 565

Query: 129 SAYRVEIKKRLPRLKKLDGEV 149
           S +   +      +     ++
Sbjct: 566 STFINWLNHTNVTIAGPPADI 586

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 20/135 (14%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
             L L    ++++       L  L+ L L  N ++     TF  L      L  L++  N
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN----LTHLFLHGN 163

Query: 74  FIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
            I     +    L  L  L +  N V      +   D   L  L    N +   L   A 
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNL-SALPTEAL 221

Query: 132 RVEIKKRLPRLKKLD 146
                  L  L+ L 
Sbjct: 222 A-----PLRALQYLR 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 13/84 (15%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
           T L L  N I  +       L  L  L L +N +       F  L      L  L++  N
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR----LMTLYLFAN 211

Query: 74  FIEK--TKGIGSLKKLKVLYMCHN 95
            +    T+ +  L+ L+ L +  N
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 21  TKLSLSTNL-IEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISY 72
            +L LS N  +  +       L +L  L L R  ++      F GL      L+ L++  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA----ALQYLYLQD 138

Query: 73  NFIEK--TKGIGSLKKLKVLYMCHNSVKEWGELNKIND-----CPVLEDLVFCGNPIVEN 125
           N ++         L  L  L++  N       ++ + +        L+ L+   N +  +
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGN------RISSVPERAFRGLHSLDRLLLHQNRV-AH 191

Query: 126 LEESAYRVEIKKRLPRLKKLD 146
           +   A+R      L RL  L 
Sbjct: 192 VHPHAFR-----DLGRLMTLY 207

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK- 77
             L L  N I KIS      L KL  L L +N +K      P    L+EL +  N I K 
Sbjct: 79  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVHENEITKV 136

Query: 78  TKGI-GSLKKLKVLYMCHNSVKEWG-ELNKINDCPVLEDLVFCGNPI 122
            K +   L ++ V+ +  N +K  G E         L  +      I
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 37/134 (27%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
           T+L L  N I K+    L  L  L  L L  N I      +      L     EL ++ N
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL----RELHLNNN 250

Query: 74  FIEK-TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYR 132
            + K   G+   K ++V+Y+ +N++              +    FC              
Sbjct: 251 KLVKVPGGLADHKYIQVVYLHNNNISA------------IGSNDFCPPGYNTKK------ 292

Query: 133 VEIKKRLPRLKKLD 146
                       + 
Sbjct: 293 -------ASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 21  TKLSLSTNLIEKIS----GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIE 76
             + L TN ++           +KKL  + +    I T     P    L EL +  N I 
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKIT 205

Query: 77  K--TKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
           K     +  L  L  L +  NS+        + + P L +L    N +
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKL 252

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 18/135 (13%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
             L LS N I  IS   L     L+ L L  N I T     F+ L  L    E L +SYN
Sbjct: 55  KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL----EHLDLSYN 110

Query: 74  FIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAY 131
           ++   +      L  L  L +  N  K  GE +  +    L+ L          ++   +
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 132 RVEIKKRLPRLKKLD 146
                  L  L++L+
Sbjct: 171 A-----GLTFLEELE 180

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 5e-06
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 28/141 (19%)

Query: 21  TKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISY 72
             L LS N + ++        L  L  L L  N +       F  +      L  L +S 
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP----NLRYLDLSS 97

Query: 73  NFIEK-TKGI-GSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPIVEN 125
           N +    + +   L+ L+VL + +N       +  +      D   L+ L    N I   
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNN------HIVVVDRNAFEDMAQLQKLYLSQNQI-SR 150

Query: 126 LEESAYRVEIKKRLPRLKKLD 146
                 +     +LP+L  LD
Sbjct: 151 FPVELIKD--GNKLPKLMLLD 169

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIK-----TFTGLEPLGDCLEELWISYN 73
             L LS N +  IS    + +  LR L L  N +       F+ L+     LE L +  N
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA----LEVLLLYNN 122

Query: 74  FIEK-TKGI-GSLKKLKVLYMCHNSVK--EWGELNKINDCPVLEDLVFCGNPI 122
            I    +     + +L+ LY+  N +       +   N  P L  L    N +
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 14/113 (12%)

Query: 18  NPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFI 75
           N         +  + ++     +K++I+ +G N +KTF     L     L  L   YN +
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 76  EKT-KGIGSLKKLKVLYMCHNSVKEWGELNKI-----NDCPVLEDLVFCGNPI 122
           E      GS  KL  L + +N       + +I          +E+L F  N +
Sbjct: 343 EGKLPAFGSEIKLASLNLAYNQ------ITEIPANFCGFTEQVENLSFAHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 21  TKLSLSTN-LIEKISGLMSLKKLRILALGRNMIKTFTGLEP--LGDC--LEELWISYNFI 75
             L    N L  K+    S  KL  L L  N I   T +     G    +E L  ++N +
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI---TEIPANFCGFTEQVENLSFAHNKL 389

Query: 76  E---KTKGIGSLKKLKVLYMCHN 95
           +         S+  +  +   +N
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYN 412

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 21  TKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIE 76
             L+L+ N I +I  +     +++  L+   N +K    +        +  +  SYN I 
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 77  K---------TKGIGSLKKLKVLYMCHNS 96
                              +  + + +N 
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 12/87 (13%)

Query: 21  TKLSLSTNLIEKI---------SGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELW 69
           + ++L  N++ +I             +   L  + L  N +   +          L  + 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 70  ISYNFIEK-TKGIGSLKKLKVLYMCHN 95
           +SYN   K      +   LK   + + 
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 18/126 (14%), Positives = 41/126 (32%), Gaps = 25/126 (19%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMI------KTFTGLEPLGDCLEELWISY 72
             L L    +  I      +L  +  + +  ++        +F  L      +  + I  
Sbjct: 34  QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL----SKVTHIEIRN 89

Query: 73  NFIEKTKGIGS--------LKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
                 + +          L  LK L + +  +K + +L K+    +   L    NP + 
Sbjct: 90  T-----RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 125 NLEESA 130
           ++  +A
Sbjct: 145 SIPVNA 150

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
           T L++S N I ++    ++SL KLRIL +  N I+      F   +     LE L +S+N
Sbjct: 24  TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE----LEYLDLSHN 79

Query: 74  FIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
            +           LK L +  N+        +  +   L+ L      +
Sbjct: 80  KL-VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 21  TKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKT--FTGLEPLGDCLEELWISYNFI 75
            +L +S N +            K L  L +  N++    F  L P    ++ L +  N I
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR---IKVLDLHSNKI 433

Query: 76  EK-TKGIGSLKKLKVLYMCHNSVK 98
           +   K +  L+ L+ L +  N +K
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 14  FKGPNPNTKLSLSTNLIEKI--SGLMSLKKLRILALGRNMIKTFTGLEPLGDC---LEEL 68
               +P   L  S NL+          L +L  L L  N +K  + +  +      L++L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 69  WISYNFIEKTKGIG---SLKKLKVLYMCHNS 96
            IS N +   +  G     K L  L M  N 
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 12/109 (11%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TK 79
             ++   N +  +        L +L++  N +   T L  L + LE L +S N +E    
Sbjct: 143 EYINADNNQLTMLPE--LPTSLEVLSVRNNQL---TFLPELPESLEALDVSTNLLESLPA 197

Query: 80  GIGSLKKLK----VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE 124
                   +          N +    E   I        ++   NP+  
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSS 244

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
            +L+L+ N I KI       L  L  L L +N + +     F  L+     LE L +SYN
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD----KLEVLDLSYN 357

Query: 74  FIE--KTKGIGSLKKLKVLYMCHNSVK 98
            I     +    L  LK L +  N +K
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLK 384

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
           T++ L  N I+ I        KKLR + L  N I       F GL      L  L +  N
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS----LNSLVLYGN 90

Query: 74  FIEK-TKGI-GSLKKLKVLYMCHN 95
            I +  K +   L  L++L +  N
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNAN 114

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISYN 73
             LSLS N I ++    +  L +LR+L L  N I++     F   +     LE L +S+N
Sbjct: 55  KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD----LEYLDVSHN 110

Query: 74  FIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPI 122
            + +      +  L+ L +  N         +  +   L  L       
Sbjct: 111 RL-QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TK 79
            +L +S N +  +  L S  +L+ L +  N +   T L  L   L  L +  N + +  +
Sbjct: 224 KELIVSGNRLTSLPVLPS--ELKELMVSGNRL---TSLPMLPSGLLSLSVYRNQLTRLPE 278

Query: 80  GIGSLKKLKVLYMCHN 95
            +  L     + +  N
Sbjct: 279 SLIHLSSETTVNLEGN 294

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 14/85 (16%)

Query: 21  TKLSLSTNLIEKIS---GLMSLKKLRILALGRNMIKT-----FTGLEPLGDCLEELWISY 72
            +L L+ N    +        L +LR +    N I       F G       + E+ ++ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG----VNEILLTS 90

Query: 73  NFIEK-TKGI-GSLKKLKVLYMCHN 95
           N +E     +   L+ LK L +  N
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSN 115

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 14  FKGPNPNTKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGDCLE 66
           F       +L L  N ++ +      SL KL  L+LG N +++     F  L      L+
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS----LK 160

Query: 67  ELWISYNFIEK--TKGIGSLKKLKVLYMCHNSVK 98
           EL +  N +++        L +LK L + +N +K
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 29/104 (27%)

Query: 21  TKLSLSTNLIEKISG--LMSLKKLRILALGRNMIKT-----FTGLEPLGD---------- 63
             L LS N +  +      S  +L++L L R  I+T     +  L  L            
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 64  ----------CLEELWISYNFIEK--TKGIGSLKKLKVLYMCHN 95
                      L++L      +       IG LK LK L + HN
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.79
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.65
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.57
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.54
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.54
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.53
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.52
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.51
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.5
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.5
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.49
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.49
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.48
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.48
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.46
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.46
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.45
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.44
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.4
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.39
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.34
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.33
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.3
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.29
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	99.28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.01
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.74
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.39
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.24
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.22
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.18
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.17
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.46
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.35
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.33

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.79  E-value=9.4e-19  Score=116.07  Aligned_cols=141  Identities=22%  Similarity=0.312  Sum_probs=120.3

Q ss_pred             hhhhhhccCCCCCCCcEEEccCCccccccCCcCCc-cCcEEEcCCCccccccCccccccccceeeccccccCCccC--CC
Q psy1563           6 REKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLK-KLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IG   82 (152)
Q Consensus         6 ~~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~-~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~   82 (152)
                      +.+.+...+.++++++.|++++|.++.++.+..+. +|+.+++++|.++.++.+..+. +|+.+++++|.++.++.  +.
T Consensus         7 ~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A            7 ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             HHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCS-SCCEEECCSSCCCEECSCHHH
T ss_pred             HHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCC-CCCEEECCCCcccccCcchhh
Confidence            34455566778999999999999999888666665 9999999999999887777776 99999999999998864  47


Q ss_pred             CCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCccc
Q psy1563          83 SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVL  150 (152)
Q Consensus        83 ~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~  150 (152)
                      .+++|+.|++++|.+++++....+..+++|+.+++++|++...+   .++..++..+++|+.||...+
T Consensus        86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTEEC
T ss_pred             cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH---hHHHHHHHHCCccceeCCCcC
Confidence            88999999999999999886556788999999999999998654   566677899999999988654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.74  E-value=2.6e-20  Score=125.84  Aligned_cols=140  Identities=49%  Similarity=0.807  Sum_probs=121.2

Q ss_pred             cCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYM   92 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l   92 (152)
                      .+..+++|+.|++++|.++.++.+..+++|+.+++++|.++.+|......++|+.+++++|.++.++.+..+++|+.|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l  122 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence            45678899999999999998888888999999999999999888654443499999999999998877778899999999


Q ss_pred             CCCccCCcccccccCCCCCccEEEecCCCCccccch----hHHHHHHHHhCCCcccccCcccCC
Q psy1563          93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE----SAYRVEIKKRLPRLKKLDGEVLPE  152 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~----~~~~~~~~~~l~~L~~l~~~~~~~  152 (152)
                      ++|.+++++....+..+++|+.+++.+|++.+.++.    ..++..++..+++|+.||+.++++
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~  186 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV  186 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCH
Confidence            999999877545678899999999999999876543    467788899999999999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=1.9e-17  Score=106.75  Aligned_cols=131  Identities=21%  Similarity=0.241  Sum_probs=110.9

Q ss_pred             CCCCCCCcEEEccCCccc--ccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCC-ccC-CCCCCccc
Q psy1563          14 FKGPNPNTKLSLSTNLIE--KIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TKG-IGSLKKLK   88 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~--~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~-l~~-~~~~~~L~   88 (152)
                      ....++++.|++++|.++  .++ .+..+++|+.+++++|.++.++.+..+. +|+.+++++|.++. ++. +..+++|+
T Consensus        13 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             TCCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             cCCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCC-CCCEEECCCCcccchHHHHhhhCCCCC
Confidence            345688999999999998  677 6688999999999999998886667776 99999999999987 554 45689999


Q ss_pred             EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCc
Q psy1563          89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGE  148 (152)
Q Consensus        89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~  148 (152)
                      .|++++|.+++++....+..+++|+.+++++|++++.+   .++...+..+++|+.||..
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN---DYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST---THHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH---HHHHHHHHHCCCcccccCC
Confidence            99999999998764457788999999999999998765   3455568999999999864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.73  E-value=3.5e-17  Score=107.57  Aligned_cols=132  Identities=24%  Similarity=0.234  Sum_probs=112.1

Q ss_pred             CCCCCCcEEEccCCccc--ccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCC-ccC-CCCCCcccE
Q psy1563          15 KGPNPNTKLSLSTNLIE--KIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TKG-IGSLKKLKV   89 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~--~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~-l~~-~~~~~~L~~   89 (152)
                      ..+++++.|++++|.++  .++ .+..+++|+.|++++|.++.++.+..+. +|+.+++++|.++. ++. +..+++|+.
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            45688999999999998  777 5688999999999999998886666776 99999999999988 454 456899999


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCccc
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVL  150 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~  150 (152)
                      |++++|.+++++....+..++.|+.+++++|++.+.+   .++...+..+++|+.||....
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN---DYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST---THHHHHHTTCSSCCEETTEET
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH---HHHHHHHHhCccCcEecCCCC
Confidence            9999999999875557888999999999999998765   455556889999999987543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=4.1e-16  Score=107.45  Aligned_cols=135  Identities=21%  Similarity=0.265  Sum_probs=96.8

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC-CCCCCcc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG-IGSLKKL   87 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L   87 (152)
                      .+.++++|+.|++++|.++.++  .+..+++|+.|++++|.++.++ . +..+. +|+.|++++|.++.+|. +..+++|
T Consensus        59 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L  137 (229)
T 3e6j_A           59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV-HLKELFMCCNKLTELPRGIERLTHL  137 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCSCCTTGGGCTTC
T ss_pred             HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch-hhCeEeccCCcccccCcccccCCCC
Confidence            3667788888888888887775  4577888888888888888776 2 34555 88888888888887754 6777888


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc-hhHHHHHHHHhCCCcccccCcc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE-ESAYRVEIKKRLPRLKKLDGEV  149 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~~~~~l~~L~~l~~~~  149 (152)
                      ++|++++|.++.++. ..+..+++|+.+++.+|++....+ ...++..+......+..+|+.+
T Consensus       138 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~  199 (229)
T 3e6j_A          138 THLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKA  199 (229)
T ss_dssp             SEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSE
T ss_pred             CEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcc
Confidence            888888888887764 356778888888888888876653 2234444444455555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.7e-16  Score=111.61  Aligned_cols=111  Identities=30%  Similarity=0.390  Sum_probs=65.6

Q ss_pred             hhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccE
Q psy1563          10 NLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKV   89 (152)
Q Consensus        10 ~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~   89 (152)
                      .+..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+.. . +|+.|++++|.++.++.+..+++|+.
T Consensus        55 ~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~-~L~~L~L~~N~l~~~~~l~~l~~L~~  132 (263)
T 1xeu_A           55 SLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-A-CLSRLFLDNNELRDTDSLIHLKNLEI  132 (263)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-S-SCCEEECCSSCCSBSGGGTTCTTCCE
T ss_pred             cchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc-C-cccEEEccCCccCCChhhcCcccccE
Confidence            334445556666666666666655445556666666666666665554433 2 66666666666665555556666666


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      |++++|.+++++   .+..+++|+.+++++|.+.+.
T Consensus       133 L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          133 LSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             EECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC
T ss_pred             EECCCCcCCCCh---HHccCCCCCEEECCCCcCcch
Confidence            666666666553   344556666666666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=4.7e-16  Score=109.62  Aligned_cols=129  Identities=20%  Similarity=0.233  Sum_probs=75.9

Q ss_pred             hhccCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCC
Q psy1563          10 NLYKFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGS   83 (152)
Q Consensus        10 ~~~~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~   83 (152)
                      .+..+..+++|++|++++|.++.++  .+..+++|++|++++|.++.++.  +..+. +|+.+++++|.++.++.  +..
T Consensus        77 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~  155 (272)
T 3rfs_A           77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDK  155 (272)
T ss_dssp             CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTT
T ss_pred             CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC-CCCEEECCCCccCccCHHHhcc
Confidence            3444555666666666666666554  24556666666666666665542  34444 66666666666665543  456


Q ss_pred             CCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          84 LKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        84 ~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +++|+.|++++|.+++++. ..+..+++|+.+++++|.+.+.++..      +..+++|+.|+
T Consensus       156 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~  211 (272)
T 3rfs_A          156 LTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDGV------FDRLTSLQYIW  211 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEE
T ss_pred             CccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCHHH------HhCCcCCCEEE
Confidence            6666666666666665543 23455666677777777666554421      44556666553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.68  E-value=7.4e-16  Score=107.36  Aligned_cols=126  Identities=22%  Similarity=0.314  Sum_probs=81.9

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      .+.++++|+.|++++|.++.++  .+..+++|++|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTK  132 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCc
Confidence            3556777777777777777654  4666777777777777777665  233444 77777777777776644  456677


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      |+.|++++|.++.++. ..+..+++|+.|++++|.+.+.++..      +..+++|+.|+
T Consensus       133 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~  185 (251)
T 3m19_A          133 LKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGA------FDRLGKLQTIT  185 (251)
T ss_dssp             CCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEE
T ss_pred             ccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHHH------HhCCCCCCEEE
Confidence            7777777777776653 24556677777777777776655422      45556666553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=2.5e-16  Score=112.13  Aligned_cols=108  Identities=28%  Similarity=0.332  Sum_probs=51.4

Q ss_pred             CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC   93 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~   93 (152)
                      +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|+++
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  164 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP-QLESLYLGNNKITDITVLSRLTKLDTLSLE  164 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCC-CCCEEEccCCcCCcchhhccCCCCCEEEcc
Confidence            3344444444444444444433444444444444444444444333333 455555555555444444445555555555


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      +|.+++.+.   +..+++|+.+++++|.+.+.
T Consensus       165 ~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          165 DNQISDIVP---LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             SSCCCCCGG---GTTCTTCCEEECCSSCCCBC
T ss_pred             CCccccchh---hcCCCccCEEECCCCcCCCC
Confidence            555554432   34455555555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=4e-16  Score=109.97  Aligned_cols=132  Identities=22%  Similarity=0.257  Sum_probs=108.7

Q ss_pred             hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCC
Q psy1563           8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGS   83 (152)
Q Consensus         8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~   83 (152)
                      ++.+..+..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.  +..+. +|+.|++++|.++.++.  +..
T Consensus        53 i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~  131 (272)
T 3rfs_A           53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLT-NLKELVLVENQLQSLPDGVFDK  131 (272)
T ss_dssp             CCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTT
T ss_pred             cccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCc-CCCEEECCCCcCCccCHHHhcc
Confidence            44556677889999999999999888878889999999999999988763  45665 99999999999988865  678


Q ss_pred             CCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          84 LKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        84 ~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +++|++|++++|.+++++. ..+..+++|+.+++++|.+.+.++..      +..+++|+.|+.
T Consensus       132 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~L  188 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGV------FDKLTQLKDLRL  188 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT------TTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHHH------hcCCccCCEEEC
Confidence            8999999999999998764 35678899999999999998776532      567788887754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=2.8e-16  Score=110.46  Aligned_cols=128  Identities=23%  Similarity=0.260  Sum_probs=110.5

Q ss_pred             hhhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCc
Q psy1563           7 EKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKK   86 (152)
Q Consensus         7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~   86 (152)
                      .++++..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+.. ++
T Consensus        30 ~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~L~~N~l~~l~~~~~-~~  107 (263)
T 1xeu_A           30 SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLT-KLEELSVNRNRLKNLNGIPS-AC  107 (263)
T ss_dssp             CTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCSCCTTCCC-SS
T ss_pred             CcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCC-CCCEEECCCCccCCcCcccc-Cc
Confidence            34555566788999999999999999888889999999999999999888777776 99999999999999887666 99


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |+.|++++|.+++++   .+..+++|+.+++++|.+++.+.        +..+++|+.|+.
T Consensus       108 L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~--------l~~l~~L~~L~L  157 (263)
T 1xeu_A          108 LSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVM--------LGFLSKLEVLDL  157 (263)
T ss_dssp             CCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGG--------GGGCTTCCEEEC
T ss_pred             ccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCChH--------HccCCCCCEEEC
Confidence            999999999999875   46789999999999999988643        677888887754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=3.2e-16  Score=111.63  Aligned_cols=128  Identities=26%  Similarity=0.298  Sum_probs=99.0

Q ss_pred             hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcc
Q psy1563           8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL   87 (152)
Q Consensus         8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L   87 (152)
                      +..+..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|
T Consensus        58 i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~i~~~~~l~~l~~L  136 (291)
T 1h6t_A           58 IKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLK-KLKSLSLEHNGISDINGLVHLPQL  136 (291)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCT-TCCEEECTTSCCCCCGGGGGCTTC
T ss_pred             cccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCC-CCCEEECCCCcCCCChhhcCCCCC
Confidence            3445556677888888888888887766777888888888888888777777776 888888888888887777788888


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +.|++++|.+++++   .+..+++|+.|++++|.+.+.++        +..+++|+.|+.
T Consensus       137 ~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~--------l~~l~~L~~L~L  185 (291)
T 1h6t_A          137 ESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP--------LAGLTKLQNLYL  185 (291)
T ss_dssp             CEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG--------GTTCTTCCEEEC
T ss_pred             CEEEccCCcCCcch---hhccCCCCCEEEccCCccccchh--------hcCCCccCEEEC
Confidence            88888888888763   56678888889998888887653        456677776643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.66  E-value=4.6e-16  Score=111.60  Aligned_cols=106  Identities=25%  Similarity=0.325  Sum_probs=49.6

Q ss_pred             CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC   93 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~   93 (152)
                      +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|+++
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  159 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS-NLQVLYLDLNQITNISPLAGLTNLQYLSIG  159 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGGGCTTCCEEECC
T ss_pred             HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCC-CCCEEECCCCccCcCccccCCCCccEEEcc
Confidence            4455555555555555555444445555555555555555444433333 444444444444444334444444444444


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIV  123 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~  123 (152)
                      +|.+++++.   +..+++|+.+++++|.+.
T Consensus       160 ~n~l~~~~~---l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          160 NAQVSDLTP---LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             SSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred             CCcCCCChh---hcCCCCCCEEECCCCccC
Confidence            444443331   233344444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.66  E-value=6.1e-16  Score=110.93  Aligned_cols=109  Identities=23%  Similarity=0.300  Sum_probs=50.6

Q ss_pred             cCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYM   92 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l   92 (152)
                      .+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|++
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l  180 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNAQVSDLTPLANLSKLTTLKA  180 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCC-CccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence            34444445555555554444444444444555555555444444333333 44555555544444433444444555555


Q ss_pred             CCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      ++|.+++++.   +..+++|+.+++++|.+.+.
T Consensus       181 ~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          181 DDNKISDISP---LASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             CSSCCCCCGG---GGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCcChh---hcCCCCCCEEEccCCccCcc
Confidence            5544444332   33344444555555544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=5.1e-16  Score=119.69  Aligned_cols=124  Identities=24%  Similarity=0.400  Sum_probs=108.3

Q ss_pred             CCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccCCCCCCcccEEEcCCCcc
Q psy1563          19 PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSV   97 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i   97 (152)
                      .|+.|++++|.++.+|.+..+++|+.|++++|.++.+| .+..+. +|+.|++++|.++.+|.+..+++|+.|++++|.+
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR-CLEVLQASDNALENVDGVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCC-CCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence            58999999999999988889999999999999999888 666776 9999999999999998888999999999999999


Q ss_pred             CCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          98 KEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        98 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +++..+..+..+++|+.|++++|++++.++.   ...+...+|+|+.||
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI---QERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSC---TTHHHHHCTTCSEEE
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCcCCCCccH---HHHHHHHCcccCccC
Confidence            9884233678899999999999999987642   333567799999885

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=3.2e-16  Score=105.58  Aligned_cols=127  Identities=17%  Similarity=0.190  Sum_probs=90.8

Q ss_pred             hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccc--ccCccccccccceeeccccccCCc--cCCCC
Q psy1563           8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT--FTGLEPLGDCLEELWISYNFIEKT--KGIGS   83 (152)
Q Consensus         8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~~l--~~~~~   83 (152)
                      +..+..+..+++|+.|++++|.++.++.+..+++|+++++++|.++.  .+.+..+. +|+.|++++|.++..  +.+..
T Consensus        56 i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~  134 (197)
T 4ezg_A           56 VTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINT  134 (197)
T ss_dssp             CSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT-TCCEEECCSSBCBGGGHHHHTT
T ss_pred             ccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCC-CCCEEEecCCccCcHhHHHHhh
Confidence            33444566677888888888877666667777888888888888775  23555665 888888888887752  33667


Q ss_pred             CCcccEEEcCCCc-cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          84 LKKLKVLYMCHNS-VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        84 ~~~L~~l~l~~n~-i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +++|+.|++++|. +++++   .+..+++|+.+++++|.+.+.+.        +..+++|+.|+
T Consensus       135 l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~--------l~~l~~L~~L~  187 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG--------IEDFPKLNQLY  187 (197)
T ss_dssp             CSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT--------GGGCSSCCEEE
T ss_pred             CCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH--------hccCCCCCEEE
Confidence            7888888888886 77765   45667788888888888876542        56777777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.65  E-value=2.3e-15  Score=103.10  Aligned_cols=109  Identities=21%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             CCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +..+++|+.|++++|.++.+ + .+..+++|+.|++++|.++.++.  +..+. +|+.|++++|.++.++.  +..+++|
T Consensus        52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L  130 (220)
T 2v9t_B           52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNL  130 (220)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCC
Confidence            34444455555555554443 2 34444455555555555444431  22333 45555555555444421  4444455


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      +.|++++|.++.++. ..+..+++|+.+++.+|++..
T Consensus       131 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          131 NLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCC
Confidence            555555555544432 133444445555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.64  E-value=2.9e-15  Score=106.62  Aligned_cols=111  Identities=23%  Similarity=0.244  Sum_probs=60.2

Q ss_pred             CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccC-ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTG-LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      +.++++|+.|++++|.++.++....+++|++|++++|.++.+|. +..+. +|+.|++++|.++.++.  +..+++|+.|
T Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L  129 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (290)
T ss_dssp             GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             hhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence            45556666666666666555433455556666666665555552 23333 55666666665555532  4555566666


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      ++++|.++.++. ..+..+++|+.|++++|.+...+
T Consensus       130 ~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G          130 YLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             ECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ECCCCCCCccCh-hhcccccCCCEEECCCCcCCccC
Confidence            666665555442 23444555555566555555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=2.6e-15  Score=103.43  Aligned_cols=122  Identities=27%  Similarity=0.306  Sum_probs=104.0

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .++++.|++++|.++.++  .+..+++|+.|++++|.++.++ . +..+. +|+.|++++|.++.++.  +..+++|+.|
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            478999999999999874  6889999999999999999887 3 45665 99999999999998865  6789999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++++|.++.++.  .+..+++|+.|++++|.+...++..      +..+++|+.|+.
T Consensus       118 ~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~l  166 (229)
T 3e6j_A          118 FMCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHGA------FDRLSSLTHAYL  166 (229)
T ss_dssp             ECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTTT------TTTCTTCCEEEC
T ss_pred             eccCCcccccCc--ccccCCCCCEEECCCCcCCccCHHH------HhCCCCCCEEEe
Confidence            999999998874  5678999999999999999776532      567788887743

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=8.4e-16  Score=119.25  Aligned_cols=119  Identities=29%  Similarity=0.321  Sum_probs=58.8

Q ss_pred             CCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCC
Q psy1563          16 GPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHN   95 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n   95 (152)
                      .+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++|+.|++++|
T Consensus        85 ~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A           85 NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP-QLESLYLGNNKITDITVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             GCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCT-TCSEEECCSSCCCCCGGGGSCTTCSEEECCSS
T ss_pred             cCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCC-ccCEEECCCCccCCchhhcccCCCCEEECcCC
Confidence            34444444444444444334444444444444444444444444443 55555555555554444445555555555555


Q ss_pred             ccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          96 SVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        96 ~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      .+++.+.   +..+++|+.|++++|.+.+.+.        +..+++|+.|+
T Consensus       164 ~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~~--------l~~l~~L~~L~  203 (605)
T 1m9s_A          164 QISDIVP---LAGLTKLQNLYLSKNHISDLRA--------LAGLKNLDVLE  203 (605)
T ss_dssp             CCCCCGG---GTTCTTCCEEECCSSCCCBCGG--------GTTCTTCSEEE
T ss_pred             cCCCchh---hccCCCCCEEECcCCCCCCChH--------HccCCCCCEEE
Confidence            5554432   4455556666666666554421        45556666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=1.4e-15  Score=117.99  Aligned_cols=129  Identities=26%  Similarity=0.305  Sum_probs=100.1

Q ss_pred             hhhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCc
Q psy1563           7 EKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKK   86 (152)
Q Consensus         7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~   86 (152)
                      .+..+..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++.+..+. +|+.|++++|.++.++.+..+++
T Consensus        54 ~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~~l~~l~~l~~  132 (605)
T 1m9s_A           54 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLK-KLKSLSLEHNGISDINGLVHLPQ  132 (605)
T ss_dssp             CCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCT-TCCEEECTTSCCCCCGGGGGCTT
T ss_pred             CCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCC-CCCEEEecCCCCCCCccccCCCc
Confidence            34455567778888888888888887766777888888888888888777777776 88888888888887777778888


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |+.|++++|.+++++   .+..+++|+.|++++|.+.+.++        +..+++|+.|+.
T Consensus       133 L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~--------l~~l~~L~~L~L  182 (605)
T 1m9s_A          133 LESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP--------LAGLTKLQNLYL  182 (605)
T ss_dssp             CSEEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGG--------GTTCTTCCEEEC
T ss_pred             cCEEECCCCccCCch---hhcccCCCCEEECcCCcCCCchh--------hccCCCCCEEEC
Confidence            888888888888763   55677888888888888877654        566777777754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.63  E-value=6.2e-15  Score=103.70  Aligned_cols=109  Identities=21%  Similarity=0.261  Sum_probs=49.6

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +.++++|++|++++|.++.++  .+..+++|++|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCC
Confidence            445555555555555555544  2344555555555555555443  122232 44444444444444422  3344444


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      ++|++++|.++.++. ..+..+++|+.+++.+|.+.+
T Consensus       136 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A          136 TYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred             CEEECCCCcCCccCH-hHccCCcccceeEecCCcCcE
Confidence            444444444444332 123334444444444444433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.63  E-value=4.2e-15  Score=105.78  Aligned_cols=114  Identities=22%  Similarity=0.236  Sum_probs=69.1

Q ss_pred             hccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCC
Q psy1563          11 LYKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLK   85 (152)
Q Consensus        11 ~~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~   85 (152)
                      +.....+++|+.|++++|.++.++ .+..+++|++|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..++
T Consensus        70 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~  148 (290)
T 1p9a_G           70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELKTLPPGLLTPTP  148 (290)
T ss_dssp             EECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             ccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-CCCEEECCCCCCCccChhhccccc
Confidence            333355666777777777776665 4556666777777777666654  244444 66666666666666543  45566


Q ss_pred             cccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          86 KLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        86 ~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      +|+.|++++|.++.++. ..+..+++|+.+++++|.+...+
T Consensus       149 ~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             TCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccC
Confidence            66666666666666553 23445666666666666665443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=8.1e-15  Score=99.31  Aligned_cols=109  Identities=21%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             CCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCccc
Q psy1563          15 KGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLK   88 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~   88 (152)
                      .++++|++|++++|.++.++  .+..+++|++|++++|.++.++.  +..+. +|+.+++++|.++.++.  +..+++|+
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~  127 (208)
T 2o6s_A           49 DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLK  127 (208)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCC
Confidence            34455555555555554443  23445555555555555544431  23333 55555555555554432  34455555


Q ss_pred             EEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      .|++++|.+++++. ..+..+++|+.+++.+|++.+.
T Consensus       128 ~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A          128 DLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             EEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCC
T ss_pred             EEECCCCccceeCH-HHhccCCCccEEEecCCCeecC
Confidence            55555555554432 1234455555555555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.62  E-value=7.8e-15  Score=103.19  Aligned_cols=112  Identities=24%  Similarity=0.282  Sum_probs=68.0

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +.++++|++|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECCCCcCCccCHhHccCCccc
Confidence            455677777777777776654  4556667777777777666554  233444 66666666666665543  4556666


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      +.|++++|.++.++. ..+..+++|+.+++++|.+.+.++
T Consensus       160 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          160 KELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             CEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCH
Confidence            666666666665543 234555666666666666655443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.61  E-value=2.6e-15  Score=108.79  Aligned_cols=123  Identities=22%  Similarity=0.285  Sum_probs=72.0

Q ss_pred             CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC   93 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~   93 (152)
                      +..+++|+.|++++|.++.++.+..+++|+++++++|.++.++.+..+. +|+.+++++|.++.++.+..+++|+.|+++
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLT-KLKMLNVGSNQISDISVLNNLSQLNSLFLN  295 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCC-CcCEEEccCCccCCChhhcCCCCCCEEECc
Confidence            4455556666666666655544555566666666666665555444444 666666666666655555556666666666


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +|.+++.+. ..+..+++|+.+++++|++.+.++        +..+++|+.||
T Consensus       296 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~  339 (347)
T 4fmz_A          296 NNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP--------LASLSKMDSAD  339 (347)
T ss_dssp             SSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCGG--------GGGCTTCSEES
T ss_pred             CCcCCCcCh-hHhhccccCCEEEccCCccccccC--------hhhhhccceee
Confidence            666655432 244556666666666666665543        45566666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=9.2e-15  Score=100.13  Aligned_cols=112  Identities=20%  Similarity=0.224  Sum_probs=71.2

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSV  131 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccC
Confidence            455666777777777766554  4666667777777777766554  244454 67777777777666632  5566677


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      +.|++++|.++.++. ..+..+++|+.+++.+|++....+
T Consensus       132 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          132 RLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCCc
Confidence            777777777766532 255566677777777777665443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.61  E-value=4.7e-15  Score=114.52  Aligned_cols=104  Identities=23%  Similarity=0.300  Sum_probs=57.6

Q ss_pred             CCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEc
Q psy1563          19 PNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYM   92 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l   92 (152)
                      .+++|++++|+|+.++  .|..+++|++|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            4566666666665553  4555666666666666665554  234444 56666666665555532  455556666666


Q ss_pred             CCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      ++|.+++++. ..++.+++|+.|++++|.+..
T Consensus       132 s~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          132 VETNLASLEN-FPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCcCCCCCh-hhhhcCcccCeeccccCcccc
Confidence            6665555543 234555555566665555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.60  E-value=5.4e-15  Score=114.15  Aligned_cols=121  Identities=26%  Similarity=0.291  Sum_probs=104.2

Q ss_pred             hhhhh--ccCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC
Q psy1563           7 EKENL--YKFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG   80 (152)
Q Consensus         7 ~~~~~--~~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~   80 (152)
                      .++.+  .+|.++++|++|++++|+|+.++  .+..+++|++|++++|+++.++  .+..+. +|+.|++++|.++.++.
T Consensus        63 ~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~  141 (635)
T 4g8a_A           63 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLEN  141 (635)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT-TCCEEECTTSCCCCSTT
T ss_pred             CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-CCCEEECCCCcCCCCCh
Confidence            34444  35889999999999999999885  6889999999999999999887  356676 99999999999998864


Q ss_pred             --CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccch
Q psy1563          81 --IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE  128 (152)
Q Consensus        81 --~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  128 (152)
                        ++.+++|+.|++++|.++..+....+..++.|+++++++|.+.+.++.
T Consensus       142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence              789999999999999998766555677899999999999999887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=1.4e-14  Score=100.90  Aligned_cols=123  Identities=23%  Similarity=0.277  Sum_probs=104.5

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+.++.|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|+.|
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCcccccChhHhcccCCCCEE
Confidence            357999999999998875  6889999999999999999876  356666 99999999999998864  6789999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++++|.++.++. ..+..+++|+.|++++|.+.+.++..      +..+++|+.|+.
T Consensus       113 ~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~L  162 (251)
T 3m19_A          113 YLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAGA------FDKLTNLQTLSL  162 (251)
T ss_dssp             ECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT------TTTCTTCCEEEC
T ss_pred             EcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHHH------cCcCcCCCEEEC
Confidence            999999998874 35678999999999999999877543      567888888754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=2.1e-14  Score=98.39  Aligned_cols=123  Identities=20%  Similarity=0.265  Sum_probs=104.1

Q ss_pred             CCCCcEEEccCCcccccc---CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563          17 PNPNTKLSLSTNLIEKIS---GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV   89 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~---~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~   89 (152)
                      ...++.|++++|.++.++   .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|+.
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  109 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKT  109 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCccCccCHhHhcCCcCCCE
Confidence            346789999999999873   3788999999999999999886  466676 99999999999998864  788999999


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |++++|.++.++. ..+..+++|+.+++++|.+.+.++..      +..+++|+.|+.
T Consensus       110 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L  160 (220)
T 2v70_A          110 LMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGA------FDTLHSLSTLNL  160 (220)
T ss_dssp             EECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTT------TTTCTTCCEEEC
T ss_pred             EECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHH------hcCCCCCCEEEe
Confidence            9999999998753 36778999999999999999876543      667888887753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=1.4e-14  Score=99.20  Aligned_cols=122  Identities=21%  Similarity=0.242  Sum_probs=104.8

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccC--CCCCCcccEEE
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLY   91 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~   91 (152)
                      +.++.|++++|.++.++  .+..+++|+.|++++|.++.+ + .+..+. +|+.|++++|.++.++.  +..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            68999999999999886  688899999999999999987 3 566776 99999999999998875  67899999999


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +++|.++.++. ..+..+++|+.|++++|.+.+.++..      +..+++|+.|+.
T Consensus       111 L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L  159 (220)
T 2v9t_B          111 LNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGT------FSPLRAIQTMHL  159 (220)
T ss_dssp             CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEEC
T ss_pred             CCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHH------HhCCCCCCEEEe
Confidence            99999998864 36788999999999999999877542      566788877643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.59  E-value=2e-14  Score=101.69  Aligned_cols=125  Identities=22%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +..+++|++|++++|.++.++  .+..+++|+.+++++|.++.++ . +..+. +|+.+++++|.++.++.  +..+++|
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECCCCcccccCHHHhcCcccc
Confidence            334445555555555544432  3444555555555555554443 1 33333 55555555555554432  4455555


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +.|++++|.+++.. ...+..+++|+.+++++|.+.+.++.      .+..+++|+.|+
T Consensus       180 ~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~  231 (285)
T 1ozn_A          180 DRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQYLR  231 (285)
T ss_dssp             CEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHH------HHTTCTTCCEEE
T ss_pred             CEEECCCCcccccC-HhHccCcccccEeeCCCCcCCcCCHH------HcccCcccCEEe
Confidence            55555555555442 12445556666666666666654432      245566666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=5.7e-15  Score=99.40  Aligned_cols=123  Identities=22%  Similarity=0.291  Sum_probs=104.7

Q ss_pred             CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCC--ccCCCCCCcccEEEc
Q psy1563          15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK--TKGIGSLKKLKVLYM   92 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~--l~~~~~~~~L~~l~l   92 (152)
                      ..+++++.|++++|.++.++.+..+++|+.+++++|.++.++.+..+. +|+.+++++|.++.  .+.+..+++|+.|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            457789999999999998888889999999999999888887777776 99999999999986  345889999999999


Q ss_pred             CCCccCCcccccccCCCCCccEEEecCCC-CccccchhHHHHHHHHhCCCcccccC
Q psy1563          93 CHNSVKEWGELNKINDCPVLEDLVFCGNP-IVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++|.+++.. ...+..+++|+.+++++|. +...+.        +..+++|+.|+.
T Consensus       120 s~n~i~~~~-~~~l~~l~~L~~L~L~~n~~i~~~~~--------l~~l~~L~~L~l  166 (197)
T 4ezg_A          120 SHSAHDDSI-LTKINTLPKVNSIDLSYNGAITDIMP--------LKTLPELKSLNI  166 (197)
T ss_dssp             CSSBCBGGG-HHHHTTCSSCCEEECCSCTBCCCCGG--------GGGCSSCCEEEC
T ss_pred             cCCccCcHh-HHHHhhCCCCCEEEccCCCCccccHh--------hcCCCCCCEEEC
Confidence            999998733 2367789999999999998 665532        678899988864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.58  E-value=3.9e-14  Score=95.91  Aligned_cols=123  Identities=24%  Similarity=0.285  Sum_probs=103.6

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+++++|++++|.++.++  .+..+++|+.|++++|.++.++.  +..+. +|+.+++++|.++.++.  +..+++|+.|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            568999999999999876  47889999999999999998863  45565 99999999999998865  6789999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++++|.++.++. ..+..+++|+.+++++|.+.+.++..      +..+++|+.|+.
T Consensus       106 ~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~------~~~l~~L~~L~l  155 (208)
T 2o6s_A          106 ALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDGV------FDRLTSLQYIWL  155 (208)
T ss_dssp             ECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEEC
T ss_pred             EcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHHH------hccCCCccEEEe
Confidence            999999998764 35678999999999999998776532      567788887754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.58  E-value=2.7e-14  Score=101.04  Aligned_cols=126  Identities=22%  Similarity=0.321  Sum_probs=59.5

Q ss_pred             CCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCc-ccccc--Cccccc-----------------------ccc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNM-IKTFT--GLEPLG-----------------------DCL   65 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~-~~~~~--~~~~~~-----------------------~~L   65 (152)
                      +.++++|+.|++++|.++.+ + .+..+++|++|++++|. ++.++  .+..+.                       ++|
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            44555555555555555544 2 44455555555555554 44331  222332                       145


Q ss_pred             ceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcc
Q psy1563          66 EELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLK  143 (152)
Q Consensus        66 ~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~  143 (152)
                      +.+++++|.++.++.  +..+++|+.|++++|.+++++. ..+..++.|+.+++++|.+.+..+..      +..+++|+
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~  204 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHA------FRDLGRLM  204 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTT------TTTCTTCC
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccCHhH------ccCccccc
Confidence            555555554444432  3444555555555555554432 12344555555555555555443221      34455555


Q ss_pred             ccc
Q psy1563         144 KLD  146 (152)
Q Consensus       144 ~l~  146 (152)
                      .|+
T Consensus       205 ~L~  207 (285)
T 1ozn_A          205 TLY  207 (285)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=4.5e-14  Score=94.92  Aligned_cols=109  Identities=27%  Similarity=0.366  Sum_probs=95.3

Q ss_pred             CCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLY   91 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~   91 (152)
                      .+.++.|++++|.++.++ .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|+.|+
T Consensus        30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            468999999999999887 7889999999999999999886  366676 99999999999998864  78899999999


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      +++|.++.++. ..+..+++|+.+++.+|++.....
T Consensus       109 L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          109 LHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCc
Confidence            99999998874 357789999999999999986554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.57  E-value=1.7e-14  Score=104.51  Aligned_cols=124  Identities=23%  Similarity=0.271  Sum_probs=85.0

Q ss_pred             CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC   93 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~   93 (152)
                      +..+++|+.+++++|.+..++.+..+++|+.+++++|.++.++.+..+. +|+.+++++|.++.++.+..+++|+.++++
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  273 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISDINAVKDLTKLKMLNVG  273 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCC-CCCEEECCCCccCCChhHhcCCCcCEEEcc
Confidence            3444455555555555544444556667777777777777666555555 788888888877777667777888888888


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +|.+++++   .+..+++|+.+++++|++.+..+.      .+..+++|+.|+.
T Consensus       274 ~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L  318 (347)
T 4fmz_A          274 SNQISDIS---VLNNLSQLNSLFLNNNQLGNEDME------VIGGLTNLTTLFL  318 (347)
T ss_dssp             SSCCCCCG---GGGGCTTCSEEECCSSCCCGGGHH------HHHTCTTCSEEEC
T ss_pred             CCccCCCh---hhcCCCCCCEEECcCCcCCCcChh------HhhccccCCEEEc
Confidence            88887764   456678888888888888765442      3677888887754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.57  E-value=2.7e-14  Score=100.60  Aligned_cols=114  Identities=26%  Similarity=0.278  Sum_probs=79.0

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      .+.++++|+.|++++|.++.++  .+..+++|++|++++|.++.++  .+..+. +|+.+++++|.++.++.  +..+++
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc-cccEEECCCCCccccCchhcccCCC
Confidence            4566777777777777777664  4667777777777777776654  344554 77777777777776643  667777


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      |++|++++|.+++.+....+..+++|+.+++++|.+.+.++
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            88888888877764323356667778888888887776543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=8.6e-14  Score=92.02  Aligned_cols=109  Identities=22%  Similarity=0.321  Sum_probs=94.7

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+.++.|++++|.++.++  .+..+++|+.|++++|.++.++.  +..+. +|+.+++++|.++.++.  +..+++|+.+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEE
Confidence            578999999999999876  46889999999999999998873  45666 99999999999998865  6789999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      ++++|.++.++. ..+..+++|+.+++++|++.+..+
T Consensus       106 ~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          106 ALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence            999999998874 356779999999999999998765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=5.4e-14  Score=105.51  Aligned_cols=41  Identities=34%  Similarity=0.387  Sum_probs=19.1

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKT   54 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~   54 (152)
                      +.++++|++|++++|.++.++  .+..+++|+.|++++|.++.
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  161 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES  161 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence            334444455555544444443  24444455555555554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=8.4e-14  Score=101.79  Aligned_cols=110  Identities=25%  Similarity=0.285  Sum_probs=76.3

Q ss_pred             CCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563          16 GPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV   89 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~   89 (152)
                      ++++|+.|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|+.
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCE
Confidence            6777777777777777664  4667777777777777777665  244554 77778887777776632  667777888


Q ss_pred             EEcCCCccCCccccccc---CCCCCccEEEecCCCCccccc
Q psy1563          90 LYMCHNSVKEWGELNKI---NDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      |++++|.++.++.. .+   ..+++|+.|++++|.+...+.
T Consensus       141 L~L~~N~l~~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          141 LYLSQNQISRFPVE-LIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             EECCSSCCCSCCGG-GTC----CTTCCEEECCSSCCCCCCH
T ss_pred             EECCCCcCCeeCHH-HhcCcccCCcCCEEECCCCCCCccCH
Confidence            88888877776642 23   457777788888887776553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.54  E-value=4e-14  Score=106.56  Aligned_cols=121  Identities=26%  Similarity=0.330  Sum_probs=66.1

Q ss_pred             CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC   93 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~   93 (152)
                      +..+++|+.|++++|.++.++.+..+++|+.+++++|.++.++.+..+. +|+.+++++|.+++++.+..+++|+.|+++
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  339 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK-NLTYLTLYFNNISDISPVSSLTKLQRLFFY  339 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCT-TCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred             hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCC-CCCEEECcCCcCCCchhhccCccCCEeECC
Confidence            3344444555555554444433444555555555555555444444443 566666666655555445555666666666


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +|.+++.+   .+..+++|+.+++++|++.+.++        +..+++|+.|+
T Consensus       340 ~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~  381 (466)
T 1o6v_A          340 NNKVSDVS---SLANLTNINWLSAGHNQISDLTP--------LANLTRITQLG  381 (466)
T ss_dssp             SSCCCCCG---GGTTCTTCCEEECCSSCCCBCGG--------GTTCTTCCEEE
T ss_pred             CCccCCch---hhccCCCCCEEeCCCCccCccch--------hhcCCCCCEEe
Confidence            66666543   34556666777777776665543        45566665553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.54  E-value=4.5e-14  Score=102.07  Aligned_cols=123  Identities=20%  Similarity=0.122  Sum_probs=79.8

Q ss_pred             CCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCc-cC-CCCCCcccEEE
Q psy1563          16 GPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKT-KG-IGSLKKLKVLY   91 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~L~~l~   91 (152)
                      ++++|+.|++++|.++.+| .+..+++|+.|++++|.++.++ .+..+. +|+.|++++|.+... +. +..+++|+.|+
T Consensus       181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT-TCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCC-CCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            3667777777777776665 5666777777777777777665 444454 777777777665433 33 56677777777


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +++|.+.+.- ...+..+++|+.+++++|++.+..|..      ++.+++++.++
T Consensus       260 L~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~------l~~L~~L~~l~  307 (328)
T 4fcg_A          260 LKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSL------IAQLPANCIIL  307 (328)
T ss_dssp             CTTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGG------GGGSCTTCEEE
T ss_pred             CCCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHH------HhhccCceEEe
Confidence            7776544322 124566777777777777777666543      56677666553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.53  E-value=1.9e-14  Score=103.99  Aligned_cols=109  Identities=16%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccC-CccC-CC-------
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIE-KTKG-IG-------   82 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~-~l~~-~~-------   82 (152)
                      +.++++|++|++++|.++.+| .+..+++|++|++++|.++.+| .+..+. +|+.|++++|... .+|. +.       
T Consensus       100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLN-RLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT-TCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCc-CCCEEECCCCCCccccChhHhhccchhh
Confidence            344666677777776666655 5666666777777666666555 344443 5566666554322 2222 21       


Q ss_pred             --CCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          83 --SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        83 --~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                        .+++|+.|++++|.++.++.  .+..+++|+.|++++|.+.+.
T Consensus       179 ~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l  221 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSAL  221 (328)
T ss_dssp             EEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCC
T ss_pred             hccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcC
Confidence              24555555555555554432  344455555555555555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.53  E-value=6.6e-14  Score=104.67  Aligned_cols=86  Identities=23%  Similarity=0.308  Sum_probs=39.4

Q ss_pred             CccCcEEEcCCCccccccCccccccccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEE
Q psy1563          39 LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLV  116 (152)
Q Consensus        39 ~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~  116 (152)
                      +++|+.|++++|.++.+|.+..+. +|+.|++++|.++.++.  +..+++|+.|++++|.++.++. ..+..+++|+.|+
T Consensus       184 l~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~  261 (440)
T 3zyj_A          184 LSNLRYLNLAMCNLREIPNLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEIN  261 (440)
T ss_dssp             CSSCCEEECTTSCCSSCCCCTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEE
T ss_pred             ccccCeecCCCCcCccccccCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEE
Confidence            334444444444444444333333 44445555544444421  3444455555555555444432 2344455555555


Q ss_pred             ecCCCCcccc
Q psy1563         117 FCGNPIVENL  126 (152)
Q Consensus       117 l~~n~~~~~~  126 (152)
                      +++|.++..+
T Consensus       262 L~~N~l~~~~  271 (440)
T 3zyj_A          262 LAHNNLTLLP  271 (440)
T ss_dssp             CTTSCCCCCC
T ss_pred             CCCCCCCccC
Confidence            5555555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=1.5e-13  Score=92.35  Aligned_cols=117  Identities=20%  Similarity=0.180  Sum_probs=98.5

Q ss_pred             cEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC--CCCCCcccEEEcCCCc
Q psy1563          21 TKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNS   96 (152)
Q Consensus        21 ~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~   96 (152)
                      +.++.+++.++.+| .+  .++++.|++++|.++.+| .+..+. +|+.|++++|.++.++.  +..+++|+.|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            57899999999888 44  368999999999999887 566666 99999999999998864  7899999999999999


Q ss_pred             cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          97 VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        97 i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++.++. ..+..+++|+.|++++|.+...++..      +..+++|+.|+.
T Consensus        90 l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L  133 (193)
T 2wfh_A           90 LRCIPP-RTFDGLKSLRLLSLHGNDISVVPEGA------FNDLSALSHLAI  133 (193)
T ss_dssp             CCBCCT-TTTTTCTTCCEEECCSSCCCBCCTTT------TTTCTTCCEEEC
T ss_pred             cCEeCH-HHhCCCCCCCEEECCCCCCCeeChhh------hhcCccccEEEe
Confidence            998874 36788999999999999999876532      567788877743

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=1.1e-13  Score=101.23  Aligned_cols=126  Identities=25%  Similarity=0.310  Sum_probs=101.3

Q ss_pred             CCCCcEEEccCCcccccc--CCc-CCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLM-SLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV   89 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~-~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~   89 (152)
                      .+.++.|++++|.++.++  .+. .+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|+.
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            346899999999999886  455 8999999999999999886  466676 99999999999998854  788999999


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |++++|.|+.++. ..+..+++|+.|++++|.+...+... +.  -...+++|+.||.
T Consensus       117 L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~-~~--~~~~l~~L~~L~L  170 (361)
T 2xot_A          117 LLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVEL-IK--DGNKLPKLMLLDL  170 (361)
T ss_dssp             EECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGG-TC------CTTCCEEEC
T ss_pred             EECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHH-hc--CcccCCcCCEEEC
Confidence            9999999998753 36788999999999999999876531 00  0145777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=2.3e-13  Score=91.25  Aligned_cols=109  Identities=25%  Similarity=0.266  Sum_probs=94.0

Q ss_pred             CCCcEEEccCCcccccc-C--CcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          18 NPNTKLSLSTNLIEKIS-G--LMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~-~--l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      ..++.|++++|.++.++ .  +..+++|+.|++++|.++.+ + .+..+. +|+.|++++|.++.++.  +..+++|++|
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            48999999999999875 2  78999999999999999987 3 566676 99999999999998854  7889999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccch
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE  128 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  128 (152)
                      ++++|.++.... ..+..+++|+.+++.+|++....+.
T Consensus       108 ~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          108 NLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             ECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCcc
Confidence            999999998753 3677899999999999999977653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.52  E-value=9.4e-14  Score=103.86  Aligned_cols=127  Identities=20%  Similarity=0.215  Sum_probs=77.0

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccc------------------------cc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLG------------------------DC   64 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~------------------------~~   64 (152)
                      .+.++++|+.|++++|.++.++  .+..+++|+.|++++|.++.++.  +..+.                        ++
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  186 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN  186 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred             hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence            4667777888888888777665  46677777777777777765541  22222                        25


Q ss_pred             cceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563          65 LEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK  144 (152)
Q Consensus        65 L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  144 (152)
                      |+.|++++|.++.++.+..+++|+.|++++|.+++++. ..+..+++|+.|++.+|.+.+.++..      +..+++|+.
T Consensus       187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~  259 (440)
T 3zyj_A          187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNA------FDNLQSLVE  259 (440)
T ss_dssp             CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTS------STTCTTCCE
T ss_pred             cCeecCCCCcCccccccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEEChhh------hcCCCCCCE
Confidence            55555655655555555555666666666666665532 24555666666666666666544322      445555555


Q ss_pred             cc
Q psy1563         145 LD  146 (152)
Q Consensus       145 l~  146 (152)
                      ||
T Consensus       260 L~  261 (440)
T 3zyj_A          260 IN  261 (440)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.52  E-value=1.1e-13  Score=104.19  Aligned_cols=126  Identities=24%  Similarity=0.201  Sum_probs=85.4

Q ss_pred             cCCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      .+.++++|++|++++|.++.+ + .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.+..  +..+++
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC-CCCEEECCCCccccCChhHcccccc
Confidence            466677777777777777765 3 5677777777777777777665  234454 77777777777766532  667777


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      |+.|++++|.++.+.. ..+..+++|+.|++.+|.+.+.++.      .+..+++|+.|+
T Consensus       130 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~  182 (477)
T 2id5_A          130 LKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE------ALSHLHGLIVLR  182 (477)
T ss_dssp             CCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH------HHTTCTTCCEEE
T ss_pred             CCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh------HhcccCCCcEEe
Confidence            7777777777776543 2566677788888888877765532      255666666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.52  E-value=8.6e-14  Score=99.28  Aligned_cols=109  Identities=22%  Similarity=0.181  Sum_probs=47.1

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccc--cc-CccccccccceeeccccccCCccC--CCCCCc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKT--FT-GLEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~--~~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      +..+++|+.|++++|.+....  .+..+++|+.+++++|.++.  .+ .+..+. +|+.+++++|.++.++.  +..+++
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCC
Confidence            334444444444444444321  23444444444444444432  22 222232 45555555554444311  344444


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      |+.|++++|.+++.+.. .+..+++|+.+++++|.+.+
T Consensus       201 L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             CCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCB
T ss_pred             CCEEECCCCccCccChh-hccCcccCCEeECCCCCCcc
Confidence            55555555544443321 23344444444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=1.2e-13  Score=92.72  Aligned_cols=117  Identities=18%  Similarity=0.174  Sum_probs=97.8

Q ss_pred             cEEEccCCcccccc-CCcCCccCcEEEcCCCccccccC---ccccccccceeeccccccCCcc-C-CCCCCcccEEEcCC
Q psy1563          21 TKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTG---LEPLGDCLEELWISYNFIEKTK-G-IGSLKKLKVLYMCH   94 (152)
Q Consensus        21 ~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~---~~~~~~~L~~l~l~~n~~~~l~-~-~~~~~~L~~l~l~~   94 (152)
                      +.++++++.++.+| .+.  .+++.|++++|.++.++.   +..+. +|+.|++++|.++.+. . +..+++|+.|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            68999999999888 443  389999999999998863   55666 9999999999999883 3 78999999999999


Q ss_pred             CccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |.++.++. ..+..+++|+.|++++|.+.+.++..      +..+++|+.|+.
T Consensus        88 N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L  133 (192)
T 1w8a_A           88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGS------FEHLNSLTSLNL  133 (192)
T ss_dssp             CCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTS------STTCTTCCEEEC
T ss_pred             CcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHH------hhcCCCCCEEEe
Confidence            99998764 35778999999999999999876543      567888887743

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.52  E-value=3.2e-13  Score=89.30  Aligned_cols=104  Identities=17%  Similarity=0.225  Sum_probs=89.3

Q ss_pred             CcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcCC
Q psy1563          20 NTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCH   94 (152)
Q Consensus        20 l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~   94 (152)
                      -+.+++++|.++.+| .+  .++++.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            368999999999888 44  378999999999999884  456676 99999999999999865  57899999999999


Q ss_pred             CccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      |.++.++. ..+..+++|+.+++.+|++...+.
T Consensus        91 N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence            99998874 357789999999999999987764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.51  E-value=2.3e-13  Score=95.84  Aligned_cols=122  Identities=24%  Similarity=0.282  Sum_probs=102.8

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEE
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLY   91 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~   91 (152)
                      +.++.|++++|.++.++  .+..+++|+.+++++|.++.++  .+..+. +|+.+++++|.++.++.  +..+++|+.|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccEEE
Confidence            46999999999999875  6888999999999999999876  356666 99999999999988753  78899999999


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCcccc-chhHHHHHHHHhCCCcccccC
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL-EESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +++|.++.++.. .+..+++|+.+++++|.+.+.. +..      +..+++|+.|+.
T Consensus       107 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~l~~~------~~~l~~L~~L~L  156 (276)
T 2z62_A          107 AVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEY------FSNLTNLEHLDL  156 (276)
T ss_dssp             CTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGG------GGGCTTCCEEEC
T ss_pred             CCCCCccccCch-hcccCCCCCEEECcCCccceecCchh------hccCCCCCEEEC
Confidence            999999987643 5778999999999999998732 322      677888888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.51  E-value=6.9e-14  Score=105.29  Aligned_cols=120  Identities=27%  Similarity=0.349  Sum_probs=58.0

Q ss_pred             CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCC
Q psy1563          15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCH   94 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~   94 (152)
                      ..+++|+.|++++|.++.++.+..+++|+.+++++|.++.++.+..+. +|+.+++++|.++.++.+..+++|+.|++++
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKNLTYLTLYF  318 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCT-TCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred             hcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCC-ccCeEEcCCCcccCchhhcCCCCCCEEECcC
Confidence            334444444444444443333344444444444444444443333333 5555555555554444444555555555555


Q ss_pred             CccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      |.+++.+.   +..+++|+.+++.+|.+.+.+.        +..+++|+.|+
T Consensus       319 n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--------l~~l~~L~~L~  359 (466)
T 1o6v_A          319 NNISDISP---VSSLTKLQRLFFYNNKVSDVSS--------LANLTNINWLS  359 (466)
T ss_dssp             SCCSCCGG---GGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEE
T ss_pred             CcCCCchh---hccCccCCEeECCCCccCCchh--------hccCCCCCEEe
Confidence            55554432   3345555566666665554421        44555555553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=3.7e-14  Score=112.15  Aligned_cols=114  Identities=24%  Similarity=0.203  Sum_probs=99.1

Q ss_pred             ccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCccc
Q psy1563          12 YKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLK   88 (152)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~   88 (152)
                      ..+..++.|+.|++++|.+..++ .+..+++|+.|++++|.++.+| .+..+. +|+.|+|++|.++.+|. +..+++|+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLS-NLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGT-TCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCC-CCCEEeCcCCcCCccChhhcCCCCCC
Confidence            34677899999999999999887 6778999999999999999888 566776 99999999999998865 88999999


Q ss_pred             EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccch
Q psy1563          89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE  128 (152)
Q Consensus        89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  128 (152)
                      .|++++|.++.+|.  .+..+++|+.|++++|++.+.++.
T Consensus       297 ~L~L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          297 YFYFFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             EEECCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHHHH
T ss_pred             EEECCCCCCCccCh--hhhcCCCccEEeCCCCccCCCChH
Confidence            99999999998875  578899999999999999987654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.51  E-value=6.4e-13  Score=87.51  Aligned_cols=105  Identities=18%  Similarity=0.215  Sum_probs=90.1

Q ss_pred             CCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcC
Q psy1563          19 PNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMC   93 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~   93 (152)
                      ..+.+++++|.++.+| .+  .++++.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578999999999988 44  378999999999999884  456676 99999999999998865  6789999999999


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      +|.++.++. ..+..+++|+.+++++|++....+
T Consensus        87 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998874 357789999999999999987764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.50  E-value=5.3e-14  Score=102.33  Aligned_cols=109  Identities=21%  Similarity=0.242  Sum_probs=52.9

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC---CCCCCc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG---IGSLKK   86 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~---~~~~~~   86 (152)
                      +.++++|+.|++++|.++.++  .+..+++|++|++++|.++.++ . +..+. +|+.+++++|.++.++.   +..+++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCC
Confidence            445555555555555555442  3455555555555555555444 1 33333 55555555555554432   344555


Q ss_pred             ccEEEcCCC-ccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          87 LKVLYMCHN-SVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        87 L~~l~l~~n-~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      |++|++++| .++.++. ..+..+++|+.+++++|.+.+
T Consensus       151 L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             CCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCE
T ss_pred             CcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCc
Confidence            555555555 2443321 133344444455554444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.50  E-value=1.4e-13  Score=103.20  Aligned_cols=36  Identities=31%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCC
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGR   49 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~   49 (152)
                      +.++++|++|++++|.++.++  .+..+++|+.|++++
T Consensus       143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence            455666666666666666553  344444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.50  E-value=4e-14  Score=97.78  Aligned_cols=108  Identities=13%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             CCCCCCCcEEEccCCc-ccccc--CCcCCccCcEEEcCC-Ccccccc--CccccccccceeeccccccCCccCCCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNL-IEKIS--GLMSLKKLRILALGR-NMIKTFT--GLEPLGDCLEELWISYNFIEKTKGIGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~-l~~~~--~l~~~~~L~~l~l~~-n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L   87 (152)
                      +.++++|+.|++++|. ++.++  .+..+++|+++++++ |.++.++  .+..+. +|+.+++++|.++.++.+..+++|
T Consensus        51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~-~L~~L~l~~n~l~~lp~~~~l~~L  129 (239)
T 2xwt_C           51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNTGLKMFPDLTKVYST  129 (239)
T ss_dssp             TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT-TCCEEEEEEECCCSCCCCTTCCBC
T ss_pred             ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-CCCEEeCCCCCCcccccccccccc
Confidence            4455555555555554 55443  344555555555555 5555443  222333 455555555544444433333333


Q ss_pred             c---EEEcCCC-ccCCcccccccCCCCCcc-EEEecCCCCc
Q psy1563          88 K---VLYMCHN-SVKEWGELNKINDCPVLE-DLVFCGNPIV  123 (152)
Q Consensus        88 ~---~l~l~~n-~i~~~~~~~~~~~l~~L~-~l~l~~n~~~  123 (152)
                      +   .+++++| .++.++. ..+..++.|+ .+++++|.+.
T Consensus       130 ~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             CSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC
T ss_pred             ccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc
Confidence            3   4444444 4443332 1233334444 4444444333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.49  E-value=7.2e-14  Score=96.51  Aligned_cols=124  Identities=17%  Similarity=0.172  Sum_probs=71.4

Q ss_pred             CCCCCCCcEEEccC-Ccccccc--CCcCCccCcEEEcCCCccccccCccccccccc---eeecccc-ccCCccC--CCCC
Q psy1563          14 FKGPNPNTKLSLST-NLIEKIS--GLMSLKKLRILALGRNMIKTFTGLEPLGDCLE---ELWISYN-FIEKTKG--IGSL   84 (152)
Q Consensus        14 ~~~l~~l~~L~l~~-n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~---~l~l~~n-~~~~l~~--~~~~   84 (152)
                      +.++++|++|++++ |.++.++  .+..+++|+.+++++|.++.+|.+..+. +|+   .+++++| .++.++.  +..+
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l  154 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGL  154 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCC-BCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred             cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccc-ccccccEEECCCCcchhhcCcccccch
Confidence            45566666666666 6666554  4556666666666666666665544444 555   6666666 6665543  5566


Q ss_pred             Cccc-EEEcCCCccCCcccccccCCCCCccEEEecCCC-CccccchhHHHHHHHHhC-CCccccc
Q psy1563          85 KKLK-VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP-IVENLEESAYRVEIKKRL-PRLKKLD  146 (152)
Q Consensus        85 ~~L~-~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l-~~L~~l~  146 (152)
                      ++|+ .+++++|.++.++.. .+.. ++|+.+++.+|+ +...++..      +..+ ++|+.||
T Consensus       155 ~~L~~~L~l~~n~l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~~~~------~~~l~~~L~~L~  211 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTSVQGY-AFNG-TKLDAVYLNKNKYLTVIDKDA------FGGVYSGPSLLD  211 (239)
T ss_dssp             BSSEEEEECCSCCCCEECTT-TTTT-CEEEEEECTTCTTCCEECTTT------TTTCSBCCSEEE
T ss_pred             hcceeEEEcCCCCCcccCHh-hcCC-CCCCEEEcCCCCCcccCCHHH------hhccccCCcEEE
Confidence            6666 666666666655431 2222 556666666664 55443321      3444 5555553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=1.9e-13  Score=104.64  Aligned_cols=112  Identities=27%  Similarity=0.291  Sum_probs=58.1

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +.++++|+.|++++|.++.++  .+..+++|++|++++|.++.++  .+..+. +|+.+++++|.++.++.  +..+++|
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc-ccccccccccccccCCCccccccccc
Confidence            445555555555555555443  3455555555555555555443  233443 55555555555555433  4555555


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      ++|++++|.++.+..+..+..+++|+.+++++|.+.+.+
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            555555555554322224445555566666655555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.49  E-value=2.7e-13  Score=99.79  Aligned_cols=110  Identities=18%  Similarity=0.232  Sum_probs=79.3

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L  143 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL  143 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCC
Confidence            445677888888888777664  5677778888888888777664  244554 78888888888777754  4677788


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      ++|++++|.++..+. ..+..+++|+.+++++|.+.+.
T Consensus       144 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          144 TTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBC
T ss_pred             cEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCcc
Confidence            888888887776653 2466777788888888877754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.49  E-value=6.2e-14  Score=100.75  Aligned_cols=107  Identities=21%  Similarity=0.131  Sum_probs=66.8

Q ss_pred             CCCCCCCcEEEccCCcccccc--CC-cCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CCCCCcccE
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GL-MSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKV   89 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l-~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~   89 (152)
                      +..+++|+.|++++|.++.++  .+ ..+++|+.|++++|.++.++....+. +|+.+++++|.++.++. +..+++|+.
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~  218 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTW  218 (317)
T ss_dssp             TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT-TCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred             hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccc-cCCEEECCCCcCCcchhhhcccCcccE
Confidence            344566666666666665542  22 24566666666666666655444444 67777777777666633 556677777


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV  123 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~  123 (152)
                      |++++|.++.++.  .+..++.|+.+++++|++.
T Consensus       219 L~L~~N~l~~l~~--~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          219 ISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EECTTSCCCEECT--TCCCCTTCCEEECTTCCCB
T ss_pred             EECcCCcccchhh--HhhcCCCCCEEEccCCCcc
Confidence            7777777776553  4556677777777777776

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.49  E-value=1.8e-13  Score=105.67  Aligned_cols=112  Identities=26%  Similarity=0.223  Sum_probs=58.5

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +.++++|+.|++++|.++.++  .+..+++|++|++++|.++.+ | .+..+. +|+.+++++|.++.++.  ++.+++|
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCC
Confidence            445555555555555555442  345555555555555555544 2 334444 55555555555554431  4555555


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      ++|++++|.+++......+..+++|+++++++|.+.+.+
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence            555555555554222224455555666666665555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=99.74  Aligned_cols=124  Identities=27%  Similarity=0.307  Sum_probs=102.1

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+++++|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.+++++|.++.++.  +..+++|++|
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence            358999999999999886  5889999999999999999874  466676 99999999999998865  7789999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCC-CccccchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNP-IVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++++|.+++++....+..+++|+.+++++|. +...++..      +..+++|+.|+.
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------~~~l~~L~~L~l  181 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD------FAGLTFLEELEI  181 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT------TTTCCEEEEEEE
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH------ccCCCCCCEEEC
Confidence            9999999988753467889999999999994 55544322      566777777643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=4.2e-14  Score=92.72  Aligned_cols=113  Identities=24%  Similarity=0.119  Sum_probs=96.3

Q ss_pred             CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccc-ccCccc-cccccceeeccccccCCcc---CCCCCCccc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT-FTGLEP-LGDCLEELWISYNFIEKTK---GIGSLKKLK   88 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~-~~~~~~-~~~~L~~l~l~~n~~~~l~---~~~~~~~L~   88 (152)
                      +..+++|+.|++++|.++.++.+..+++|+.|++++|.++. +|.... +. +|+.+++++|.++.++   .+..+++|+
T Consensus        45 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           45 TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            46789999999999999888878889999999999999987 565444 55 9999999999999875   377899999


Q ss_pred             EEEcCCCccCCccc--ccccCCCCCccEEEecCCCCccccc
Q psy1563          89 VLYMCHNSVKEWGE--LNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        89 ~l~l~~n~i~~~~~--~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      .|++++|.++..+.  ...+..+++|+.+++.+|.....+.
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            99999999998764  1256789999999999999877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.48  E-value=2.6e-13  Score=96.80  Aligned_cols=126  Identities=20%  Similarity=0.213  Sum_probs=84.7

Q ss_pred             CCCCCCCcEEEccCCcccccc---CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCC--ccC-CCCCC
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS---GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEK--TKG-IGSLK   85 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~---~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~--l~~-~~~~~   85 (152)
                      +..+++|+.|++++|.++.++   .+..+++|+.+++++|.++...  .+..+. +|+.+++++|.++.  ++. +..++
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccccccchhHHhhCc
Confidence            455666777777777666553   3556677777777777766443  234454 78888888887765  333 66778


Q ss_pred             cccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          86 KLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        86 ~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +|+.|++++|.+++.+. ..+..+++|+.+++++|.+.+.++..      +..+++|+.||.
T Consensus       176 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L  230 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFP------YKCLNSLQVLDY  230 (306)
T ss_dssp             TCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCSGG------GTTCTTCCEEEC
T ss_pred             CCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCccChhh------ccCcccCCEeEC
Confidence            88888888888877642 35667788888888888887765432      456677776653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.48  E-value=4.4e-13  Score=100.22  Aligned_cols=113  Identities=27%  Similarity=0.286  Sum_probs=91.6

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCcc--CCCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTK--GIGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~--~~~~~~~   86 (152)
                      .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++  .+..+++
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~  372 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHIRALGDQSFLGLPN  372 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-TCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc-cCCEEECCCCcccccChhhcccccc
Confidence            3667888999999999988764  6778889999999999888764  345565 8999999999888773  2778899


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      |+.|++++|.+++++. ..+..+++|+.+++++|++.+..+
T Consensus       373 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          373 LKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccEEECCCCccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence            9999999999988764 356778899999999999988765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.47  E-value=5.4e-13  Score=103.06  Aligned_cols=123  Identities=23%  Similarity=0.141  Sum_probs=87.9

Q ss_pred             cCCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCcc--CCCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTK--GIGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~--~~~~~~~   86 (152)
                      .+.++++|++|++++|.++.+ + .+..+++|++|++++|.++.++  .+..+. +|+.|++++|.++.++  .+..+++
T Consensus        52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc-cccEeeccccCcccCCcchhccCCc
Confidence            466777888888888887765 3 5777888888888888777653  455565 8888888888887762  3677788


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLK  143 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~  143 (152)
                      |++|++++|.+++++.. .+..+++|+.+++++|.+.+.++.      .+..+++++
T Consensus       131 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~  180 (606)
T 3t6q_A          131 LESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKE------DMSSLQQAT  180 (606)
T ss_dssp             CCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHH------HHHTTTTCC
T ss_pred             ccEEECCCCcccccCcc-cccCCcccCEEEcccCcccccChh------hhhhhcccc
Confidence            88888888888776433 333477888888888888765443      256777776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.47  E-value=3.4e-13  Score=101.54  Aligned_cols=80  Identities=24%  Similarity=0.205  Sum_probs=34.3

Q ss_pred             CCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCc
Q psy1563          17 PNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNS   96 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~   96 (152)
                      +++|+.|++++|.++.++.+..+++|+.+++++|.++.++ +..+. +|+.+++++|.++.++ +..+++|++|++++|.
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~  117 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNT-NLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNK  117 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCT-TCSEEECCSSCCSCCC-CTTCTTCCEEECCSSC
T ss_pred             cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCC-CCCEEECcCCCCceee-cCCCCcCCEEECCCCc
Confidence            4444444444444444444444444444444444444433 23332 4444444444444332 3334444444444444


Q ss_pred             cCC
Q psy1563          97 VKE   99 (152)
Q Consensus        97 i~~   99 (152)
                      +++
T Consensus       118 l~~  120 (457)
T 3bz5_A          118 LTK  120 (457)
T ss_dssp             CSC
T ss_pred             CCe
Confidence            433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=3.7e-13  Score=104.20  Aligned_cols=122  Identities=18%  Similarity=0.221  Sum_probs=89.4

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +.++++|+.|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            345778888888888887664  6777888888888888887765  245565 88888888888887764  5778888


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      ++|++++|.++..+. ..+..+++|+.|++++|.+.+.+         +..+++|+.|+
T Consensus       150 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~~L~  198 (597)
T 3oja_B          150 TTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHAN  198 (597)
T ss_dssp             CEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCSEEE
T ss_pred             CEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhhhhh
Confidence            888888888877653 35677888888888888887653         34455555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.47  E-value=6.5e-13  Score=102.62  Aligned_cols=123  Identities=23%  Similarity=0.274  Sum_probs=104.8

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCc-cC-CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKT-KG-IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~L~~l   90 (152)
                      .+.++.|++++|.++.++  .+..+++|++|++++|.++.++  .+..+. +|+.|++++|.++.+ |. +..+++|++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH-HLSNLILTGNPIQSFSPGSFSGLTSLENL  109 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchh-hcCEeECCCCcccccChhhcCCcccCCEE
Confidence            478999999999999875  6889999999999999999874  456776 999999999999988 43 8899999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCcc-ccchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE-NLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++++|.+++.+.. .+..+++|+.+++++|.+.+ ..+..      ++.+++|+.|+.
T Consensus       110 ~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~------~~~l~~L~~L~L  160 (606)
T 3vq2_A          110 VAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAY------FSNLTNLVHVDL  160 (606)
T ss_dssp             ECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGG------GGTCTTCCEEEC
T ss_pred             EccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHh------HhhcCCCCEEEc
Confidence            9999999987743 57889999999999999986 32332      678899988864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.46  E-value=2.1e-13  Score=102.64  Aligned_cols=125  Identities=22%  Similarity=0.210  Sum_probs=105.2

Q ss_pred             hhhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCc
Q psy1563           7 EKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKK   86 (152)
Q Consensus         7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~   86 (152)
                      .++.+..+..+++|++|++++|.++.++ +..+++|+.+++++|.++.++ +..+. +|+.+++++|.++.++ +..+++
T Consensus        53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~-~L~~L~L~~N~l~~l~-~~~l~~  128 (457)
T 3bz5_A           53 SITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLT-KLTYLNCDTNKLTKLD-VSQNPL  128 (457)
T ss_dssp             CCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCT-TCCEEECCSSCCSCCC-CTTCTT
T ss_pred             CcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCC-cCCEEECCCCcCCeec-CCCCCc
Confidence            3444556788999999999999999886 778999999999999999876 66676 9999999999999886 789999


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |+.|++++|.+++++    +..++.|+.+++++|...+..+        +..+++|+.|+.
T Consensus       129 L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~l  177 (457)
T 3bz5_A          129 LTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD--------VTPQTQLTTLDC  177 (457)
T ss_dssp             CCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC--------CTTCTTCCEEEC
T ss_pred             CCEEECCCCccceec----cccCCcCCEEECCCCCcccccc--------cccCCcCCEEEC
Confidence            999999999999863    5678999999999996555443        567788887764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.46  E-value=8.4e-13  Score=103.29  Aligned_cols=126  Identities=26%  Similarity=0.244  Sum_probs=98.5

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC----------ccccccccceeeccccccCCccC
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG----------LEPLGDCLEELWISYNFIEKTKG   80 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~----------~~~~~~~L~~l~l~~n~~~~l~~   80 (152)
                      .+.++++|+.|++++|.++.++  .+..+++|+.+++++|.++.++.          +..+. +|+.+++++|.++.++.
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPV  553 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT-TCCEEECCSSCCCCCCT
T ss_pred             ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC-CCCEEECCCCCCCCCCH
Confidence            4667888999999999988775  47788899999999998876531          34455 89999999999988864


Q ss_pred             --CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHH-hCCCccccc
Q psy1563          81 --IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKK-RLPRLKKLD  146 (152)
Q Consensus        81 --~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~-~l~~L~~l~  146 (152)
                        +..+++|+.+++++|.++.++. ..+..++.|+.+++++|.+++.++..      +. .+++|+.++
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~~~~~L~~l~  615 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKKV------FGPAFRNLTELD  615 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCHHH------HHHHHTTCSEEE
T ss_pred             HHcccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccChhH------hcccccccCEEE
Confidence              7788999999999999998774 35677899999999999998776531      33 556666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=4.5e-14  Score=93.39  Aligned_cols=116  Identities=25%  Similarity=0.291  Sum_probs=95.3

Q ss_pred             hhhhccCCCCC-CCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc-Cc-cccccccceeeccccccCCccC---C
Q psy1563           8 KENLYKFKGPN-PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GL-EPLGDCLEELWISYNFIEKTKG---I   81 (152)
Q Consensus         8 ~~~~~~~~~l~-~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~-~~~~~~L~~l~l~~n~~~~l~~---~   81 (152)
                      ++.+..+..+. +|+.|++++|.++.++.+..+++|+++++++|.++.++ .+ ..+. +|+.+++++|.++.++.   +
T Consensus        31 l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~l  109 (176)
T 1a9n_A           31 IPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DLTELILTNNSLVELGDLDPL  109 (176)
T ss_dssp             CCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TCCEEECCSCCCCCGGGGGGG
T ss_pred             CchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCC-CCCEEECCCCcCCcchhhHhh
Confidence            34444454554 99999999999998888889999999999999999887 44 5565 99999999999988764   6


Q ss_pred             CCCCcccEEEcCCCccCCcccc--cccCCCCCccEEEecCCCCcc
Q psy1563          82 GSLKKLKVLYMCHNSVKEWGEL--NKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        82 ~~~~~L~~l~l~~n~i~~~~~~--~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      ..+++|+.+++++|.++..+..  ..+..+++|+.+++++|...+
T Consensus       110 ~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          110 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            7889999999999999876631  125678999999999998764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.46  E-value=1.7e-13  Score=98.50  Aligned_cols=120  Identities=23%  Similarity=0.257  Sum_probs=84.1

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--Ccc-ccccccceeeccccccCCccCCCCCCcccEEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLE-PLGDCLEELWISYNFIEKTKGIGSLKKLKVLY   91 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~-~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~   91 (152)
                      +++|+.|++++|.++.++  .+..+++|+.|++++|.++.++  .+. .+. +|+.+++++|.++.++....+++|+.|+
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~l~~L~~L~  197 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKGQVVFAKLKTLD  197 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-cCCEEECCCCcCcccccccccccCCEEE
Confidence            556666777777776553  5566777888888888777653  332 333 7888888888887776655678888888


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +++|.++.++.  .+..+++|+.+++++|.+...+..       +..+++|+.|+
T Consensus       198 Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~~~-------~~~l~~L~~L~  243 (317)
T 3o53_A          198 LSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEKA-------LRFSQNLEHFD  243 (317)
T ss_dssp             CCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECTT-------CCCCTTCCEEE
T ss_pred             CCCCcCCcchh--hhcccCcccEEECcCCcccchhhH-------hhcCCCCCEEE
Confidence            88888887654  366778888888888888765431       45566666664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.46  E-value=4.5e-13  Score=100.20  Aligned_cols=123  Identities=24%  Similarity=0.273  Sum_probs=103.0

Q ss_pred             CCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+.++.|++++|.+..+ + .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|+.|
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhHhcCcccCCEE
Confidence            36899999999999876 3 6888999999999999998774  556666 99999999999987743  7889999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++++|.++.... ..+..+++|+.+++++|.+.+.++..      +..+++|+.|+.
T Consensus       353 ~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~l  402 (455)
T 3v47_A          353 DLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDGI------FDRLTSLQKIWL  402 (455)
T ss_dssp             ECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTT------TTTCTTCCEEEC
T ss_pred             ECCCCcccccCh-hhccccccccEEECCCCccccCCHhH------hccCCcccEEEc
Confidence            999999998753 36788999999999999999876532      567888887743

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.46  E-value=2.5e-13  Score=99.97  Aligned_cols=124  Identities=16%  Similarity=0.249  Sum_probs=104.7

Q ss_pred             CCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563          16 GPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV   89 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~   89 (152)
                      .+++++.++++++.++.+|  .+..+++|+++++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            3688999999999999887  3678999999999999998875  556676 99999999999998853  789999999


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |++++|.+++++. ..+..+++|+.+++++|.+.+.++..      +..+++|+.|+.
T Consensus       122 L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~l  172 (390)
T 3o6n_A          122 LVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDT------FQATTSLQNLQL  172 (390)
T ss_dssp             EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTT------TSSCTTCCEEEC
T ss_pred             EECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccChhh------ccCCCCCCEEEC
Confidence            9999999998874 24678999999999999998776542      567788887754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.46  E-value=8.2e-13  Score=101.19  Aligned_cols=123  Identities=25%  Similarity=0.317  Sum_probs=104.5

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+.++.|++++|.++.++  .+..+++|++|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|++|
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCch-hCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            457999999999999875  7889999999999999999875  456676 99999999999988753  7899999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccc-cchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN-LEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++++|.++.++.. .++.+++|+.+++++|.+.+. .+..      +..+++|+.|+.
T Consensus       106 ~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~------~~~l~~L~~L~l  156 (570)
T 2z63_A          106 VAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEY------FSNLTNLEHLDL  156 (570)
T ss_dssp             ECTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCCCCCGG------GGGCTTCCEEEC
T ss_pred             cccccccccCCCc-cccccccccEEecCCCccceecChhh------hcccCCCCEEeC
Confidence            9999999988753 578899999999999999863 2332      678889988865

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.45  E-value=5.8e-13  Score=100.33  Aligned_cols=123  Identities=21%  Similarity=0.207  Sum_probs=104.2

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+.++.|++++|.++.++  .+..+++|+.|++++|.++.+ + .+..+. +|+.|++++|.++.++.  +..+++|+.|
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            468999999999999874  788999999999999999877 3 566676 99999999999998864  6789999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++++|.++.... ..+..+++|+.|++.+|.+.+..+..      +..+++|+.|+.
T Consensus       110 ~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~l  159 (477)
T 2id5_A          110 DISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRA------FSGLNSLEQLTL  159 (477)
T ss_dssp             ECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTS------STTCTTCCEEEE
T ss_pred             ECCCCccccCCh-hHccccccCCEEECCCCccceeChhh------ccCCCCCCEEEC
Confidence            999999998753 36788999999999999998765532      567788887753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.45  E-value=1.4e-12  Score=86.11  Aligned_cols=118  Identities=21%  Similarity=0.304  Sum_probs=97.0

Q ss_pred             CcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcccEEEcCC
Q psy1563          20 NTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCH   94 (152)
Q Consensus        20 l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~   94 (152)
                      .+.++++++.++.+| .+  .++++.+++++|.++.++.  +..+. +|+.+++++|.++.++.  +..+++|+.|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467899999998887 33  4789999999999998763  45565 99999999999998865  67899999999999


Q ss_pred             CccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |.++.++. ..+..+++|+.+++++|.+.+.++.      ++..+++|+.|+.
T Consensus        86 N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~l~~L~~L~l  131 (177)
T 2o6r_A           86 NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDG------IFDRLTSLQKIWL  131 (177)
T ss_dssp             SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEEC
T ss_pred             CCccccCH-HHhhCCcccCEEECcCCcceEeCHH------HhcCCcccCEEEe
Confidence            99998774 3567899999999999999977653      2466788887743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.45  E-value=7.8e-13  Score=101.03  Aligned_cols=118  Identities=25%  Similarity=0.253  Sum_probs=53.9

Q ss_pred             CCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCC
Q psy1563          16 GPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCH   94 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~   94 (152)
                      .+++|+.|++++|+++.+| .+..+++|+.+++++|.++.++....  ++|+.+++++|.+++++  ..+++|+.|++++
T Consensus       385 ~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~  460 (549)
T 2z81_A          385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS--LFLPRLQELYISR  460 (549)
T ss_dssp             GCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCS
T ss_pred             cCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhc--ccCChhcEEECCC
Confidence            3444444444444444443 33334444444444444433321100  13333333333333221  2455666666666


Q ss_pred             CccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          95 NSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        95 n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      |+++.+|.   ...++.|+.+++++|.+++.++..      +..+++|+.|+
T Consensus       461 N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~  503 (549)
T 2z81_A          461 NKLKTLPD---ASLFPVLLVMKISRNQLKSVPDGI------FDRLTSLQKIW  503 (549)
T ss_dssp             SCCSSCCC---GGGCTTCCEEECCSSCCCCCCTTG------GGGCTTCCEEE
T ss_pred             CccCcCCC---cccCccCCEEecCCCccCCcCHHH------HhcCcccCEEE
Confidence            66665543   233556666666666666554432      44555555553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.44  E-value=5.9e-13  Score=95.56  Aligned_cols=126  Identities=21%  Similarity=0.186  Sum_probs=64.2

Q ss_pred             CCCCCCCcEEEccCCccc-ccc-CCcCCccCcEEEcCCCccc-ccc-Cccccccc-----------------------cc
Q psy1563          14 FKGPNPNTKLSLSTNLIE-KIS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDC-----------------------LE   66 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~-~~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~-----------------------L~   66 (152)
                      +.++++|++|++++|.++ .++ .+..+++|++|++++|.++ .+| .+..+.+.                       |+
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~  200 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA  200 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS
T ss_pred             HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCccc
Confidence            444555555555555554 233 4445555555555555544 222 22222112                       45


Q ss_pred             eeeccccccCCc-cC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563          67 ELWISYNFIEKT-KG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK  144 (152)
Q Consensus        67 ~l~l~~n~~~~l-~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  144 (152)
                      .+++++|.++.. +. +..+++|+.|++++|.++....  .+..+++|+.+++++|.+.+..+..      +..+++|+.
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~  272 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQG------LTQLKFLHS  272 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGG------GGGCTTCCE
T ss_pred             EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCChH------HhcCcCCCE
Confidence            555555544433 11 4556666666666666654332  2445666777777777766544432      455666665


Q ss_pred             ccC
Q psy1563         145 LDG  147 (152)
Q Consensus       145 l~~  147 (152)
                      |+.
T Consensus       273 L~L  275 (313)
T 1ogq_A          273 LNV  275 (313)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.44  E-value=4.4e-13  Score=102.38  Aligned_cols=103  Identities=27%  Similarity=0.309  Sum_probs=59.0

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEE
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLY   91 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~   91 (152)
                      +.++.|++++|.++.++  .+..+++|++|++++|.++.++  .+..+. +|+.|++++|.++.++.  +..+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-cCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            45666666666665542  4556666666666666665543  244444 66666666666655532  55566666666


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCC
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNP  121 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~  121 (152)
                      +++|.++..+....+..+++|+.+++++|.
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCc
Confidence            666666544322244555566666666655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.43  E-value=9e-13  Score=101.26  Aligned_cols=105  Identities=22%  Similarity=0.208  Sum_probs=84.5

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC   93 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~   93 (152)
                      ++++.|++++|.++.++  .+..+++|++|++++|.++.++  .+..+. +|+.|++++|.++.+|.. .+++|++|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-TCCEEECTTSCCCEECSC-CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-CCCEEECCCCcCCccCcc-ccccCCEEECC
Confidence            67888888888888774  6788888888899888888773  455665 888889988888877755 78888888888


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      +|.+++++....+..+++|+.+++++|.+.+
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCCccccCchHhhcccCcccEEecCCCcccc
Confidence            8888876644467788888888888888875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=2.3e-13  Score=103.20  Aligned_cols=105  Identities=21%  Similarity=0.137  Sum_probs=49.4

Q ss_pred             CCCCCcEEEccCCccccc-c-CCc-CCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CCCCCcccEEE
Q psy1563          16 GPNPNTKLSLSTNLIEKI-S-GLM-SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLY   91 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~-~-~l~-~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~   91 (152)
                      .+++|+.|++++|.++.+ + .+. .+++|+.|++++|.++.++....+. +|+.|++++|.++.++. +..+++|+.|+
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~  220 (487)
T 3oja_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWIS  220 (487)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred             CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCC-CCCEEECCCCCCCCCCHhHcCCCCccEEE
Confidence            344444444444444432 1 222 3444455555555444444333333 55555555555554432 44445555555


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCc
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIV  123 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~  123 (152)
                      +++|.++.+|.  .+..++.|..+++++|++.
T Consensus       221 Ls~N~l~~lp~--~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          221 LRNNKLVLIEK--ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTSCCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred             ecCCcCcccch--hhccCCCCCEEEcCCCCCc
Confidence            55555554432  2344555555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.42  E-value=7.3e-13  Score=94.95  Aligned_cols=129  Identities=18%  Similarity=0.056  Sum_probs=91.2

Q ss_pred             CCCCCcEEEccCCcccc-cc-CC--cCCccCcEEEcCCCccccccC-cccc----ccccceeeccccccCCccC--CCCC
Q psy1563          16 GPNPNTKLSLSTNLIEK-IS-GL--MSLKKLRILALGRNMIKTFTG-LEPL----GDCLEELWISYNFIEKTKG--IGSL   84 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~-~~-~l--~~~~~L~~l~l~~n~~~~~~~-~~~~----~~~L~~l~l~~n~~~~l~~--~~~~   84 (152)
                      ++++|++|++++|.++. ++ .+  ..+++|+.|++++|.++.+|. +..+    .++|+.|++++|.++.++.  +..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            57889999999999874 45 44  788899999999998887652 2333    1388899999988887753  7788


Q ss_pred             CcccEEEcCCCccCCc---ccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          85 KKLKVLYMCHNSVKEW---GELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        85 ~~L~~l~l~~n~i~~~---~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++|+.|++++|.+.+.   +....+..+++|+.+++++|.+.+.+   .....++..+++|+.||.
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~l~~L~~L~L  235 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS---GVCSALAAARVQLQGLDL  235 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH---HHHHHHHHTTCCCSEEEC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH---HHHHHHHhcCCCCCEEEC
Confidence            8899999988886542   11112367788888888888887432   222334556777777754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=4.2e-13  Score=101.76  Aligned_cols=120  Identities=23%  Similarity=0.259  Sum_probs=80.6

Q ss_pred             CCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCcccccc--Ccc-ccccccceeeccccccCCccCCCCCCcccEEE
Q psy1563          17 PNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFT--GLE-PLGDCLEELWISYNFIEKTKGIGSLKKLKVLY   91 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~--~~~-~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~   91 (152)
                      ++.|+.|++++|.++.+ + .+..+++|+.|++++|.++.++  .+. .+. +|+.|++++|.++.++....+++|+.|+
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  197 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVKGQVVFAKLKTLD  197 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCccccccccccCCCCCEEE
Confidence            45666666666666655 2 5566777777777777776542  333 343 7788888888777776656677888888


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +++|.+++++.  .+..++.|+.+++++|.+.+.+..       +..+++|+.|+
T Consensus       198 Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~~-------l~~l~~L~~L~  243 (487)
T 3oja_A          198 LSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEKA-------LRFSQNLEHFD  243 (487)
T ss_dssp             CCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECTT-------CCCCTTCCEEE
T ss_pred             CCCCCCCCCCH--hHcCCCCccEEEecCCcCcccchh-------hccCCCCCEEE
Confidence            88888877654  356677788888888888765431       34556666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=6.4e-13  Score=102.91  Aligned_cols=124  Identities=16%  Similarity=0.249  Sum_probs=106.1

Q ss_pred             CCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563          16 GPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV   89 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~   89 (152)
                      .+..++.++++++.+..+|  .+..+++|+.|++++|.++.++  .+..+. +|+.|++++|.++.++.  ++.+++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            3578899999999999887  4678999999999999999875  566676 99999999999998864  689999999


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |++++|.++.++. ..+..+++|+.|++++|.+.+.++..      +..+++|+.|+.
T Consensus       128 L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l~~L~~L~L  178 (597)
T 3oja_B          128 LVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDT------FQATTSLQNLQL  178 (597)
T ss_dssp             EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTT------TTTCTTCCEEEC
T ss_pred             EEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCChhh------hhcCCcCcEEEC
Confidence            9999999998874 25678999999999999999877643      678888888864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.41  E-value=7.2e-13  Score=100.72  Aligned_cols=105  Identities=25%  Similarity=0.227  Sum_probs=86.2

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCCccCCCCCCcccEEEcC
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMC   93 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~   93 (152)
                      ++++.|++++|.++.++  .+..+++|++|++++|.++.+ | .+..+. +|+.|++++|.++.+|.. .+++|++|+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEecc
Confidence            78899999999988774  678888999999999988876 3 556666 899999999988888765 78899999999


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      +|.+++++....++.+++|+.+++++|.+.+
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             CCccccccchhhhccCCcceEEEecCcccch
Confidence            9988875544467788889999999988875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.41  E-value=2.4e-13  Score=97.55  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=38.6

Q ss_pred             CCCCCCCcEEEccCCccc-ccc-CCcCCccCcEEEcCCCccc-ccc-CccccccccceeeccccccC-CccC-CCCCC-c
Q psy1563          14 FKGPNPNTKLSLSTNLIE-KIS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIE-KTKG-IGSLK-K   86 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~-~~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~-~l~~-~~~~~-~   86 (152)
                      +.++++|++|++++|.++ .++ .+..+++|++|++++|.++ .+| .+..+. +|+.+++++|.++ .++. +..++ +
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~  175 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhc
Confidence            344445555555555554 223 3444555555555555544 233 233333 5555555555554 2222 33343 4


Q ss_pred             ccEEEcCCCccC
Q psy1563          87 LKVLYMCHNSVK   98 (152)
Q Consensus        87 L~~l~l~~n~i~   98 (152)
                      |+.+++++|.++
T Consensus       176 L~~L~L~~N~l~  187 (313)
T 1ogq_A          176 FTSMTISRNRLT  187 (313)
T ss_dssp             CCEEECCSSEEE
T ss_pred             CcEEECcCCeee
Confidence            455555555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.41  E-value=1.9e-12  Score=100.00  Aligned_cols=123  Identities=23%  Similarity=0.227  Sum_probs=102.4

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+.++.|++++|.++.++  .+..+++|++|++++|.++.+.  .+..+. +|+.|++++|.++.++.  +..+++|++|
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCcc-ccCeeeCCCCcccccChhhhcccccccEe
Confidence            347899999999999874  7899999999999999998773  466776 99999999999987733  7899999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++++|.+++++.. .+..+++|+.+++++|.+.+....+      +..+++|+.|+.
T Consensus       111 ~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~L  160 (606)
T 3t6q_A          111 FFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPK------GFPTEKLKVLDF  160 (606)
T ss_dssp             ECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCT------TCCCTTCCEEEC
T ss_pred             eccccCcccCCcc-hhccCCcccEEECCCCcccccCccc------ccCCcccCEEEc
Confidence            9999999987533 6788999999999999998753221      344788888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=2.5e-13  Score=87.30  Aligned_cols=105  Identities=24%  Similarity=0.155  Sum_probs=87.9

Q ss_pred             cCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccc-ccCcc-ccccccceeeccccccCCcc---CCCCCCcc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKT-FTGLE-PLGDCLEELWISYNFIEKTK---GIGSLKKL   87 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~-~~~~~-~~~~~L~~l~l~~n~~~~l~---~~~~~~~L   87 (152)
                      .+..+++|+.|++++|.++.++.+..+++|+.+++++|.++. +|... .+. +|+.+++++|.++.++   .+..+++|
T Consensus        37 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           37 LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             CCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             HHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCEEECCCCcCCChHHHHHHhhCCCC
Confidence            357889999999999999988878889999999999999987 66444 355 9999999999998863   37889999


Q ss_pred             cEEEcCCCccCCcccc--cccCCCCCccEEEec
Q psy1563          88 KVLYMCHNSVKEWGEL--NKINDCPVLEDLVFC  118 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~--~~~~~l~~L~~l~l~  118 (152)
                      +.+++++|.+++.+..  ..+..+++|+.+++.
T Consensus       116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999999999987641  246678888888764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.40  E-value=1.6e-12  Score=104.34  Aligned_cols=111  Identities=23%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             CCCCCCCcEEEccCCcc-ccc-c-CCcCCccCcEEEcCCCccccc-c-CccccccccceeeccccccCC-c-cC--CCCC
Q psy1563          14 FKGPNPNTKLSLSTNLI-EKI-S-GLMSLKKLRILALGRNMIKTF-T-GLEPLGDCLEELWISYNFIEK-T-KG--IGSL   84 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l-~~~-~-~l~~~~~L~~l~l~~n~~~~~-~-~~~~~~~~L~~l~l~~n~~~~-l-~~--~~~~   84 (152)
                      +.++++|+.|++++|.. ..+ + .+..+++|++|++++|.++.+ | .+..+. +|+.|++++|.+++ + +.  +..+
T Consensus        44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc-ccCEeeCcCCCCCcccccCcccccc
Confidence            44455555555555422 222 2 344555555555555555444 2 333443 55555555555543 1 11  4455


Q ss_pred             CcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          85 KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        85 ~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      ++|++|++++|.+++......+..+++|+.|++++|.+.+.
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            55555555555555443222344555555555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.39  E-value=1.3e-12  Score=102.14  Aligned_cols=112  Identities=24%  Similarity=0.240  Sum_probs=68.6

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L   87 (152)
                      +.++++|+.|++++|.++.++  .+..+++|++|++++|.++.++.  +..+. +|+.+++++|.++.++.  +..+++|
T Consensus        45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCC
Confidence            455566666666666665542  34556666666666666666552  44554 67777777666666542  5666677


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      ++|++++|.+++.+. ..+..+++|+.+++++|.+.+.++
T Consensus       124 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             CEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             CEEECCCCcccccCc-hhhcccccCCEEEccCCcccccCH
Confidence            777777776665432 245566677777777776665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.39  E-value=1.1e-12  Score=94.03  Aligned_cols=121  Identities=20%  Similarity=0.175  Sum_probs=79.5

Q ss_pred             cCCCCCCCcEEEccCCccccc---c-C--CcCCccCcEEEcCCCccccccCc-----cccccccceeeccccccCCcc--
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKI---S-G--LMSLKKLRILALGRNMIKTFTGL-----EPLGDCLEELWISYNFIEKTK--   79 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~---~-~--l~~~~~L~~l~l~~n~~~~~~~~-----~~~~~~L~~l~l~~n~~~~l~--   79 (152)
                      .+.++++|+.|++++|.+...   + .  +..+++|+.|++++|.++.++.+     ..+. +|+.+++++|.++..+  
T Consensus       168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~  246 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLSHNSLRDAAGA  246 (312)
T ss_dssp             TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECTTSCCCSSCCC
T ss_pred             HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECCCCcCCcccch
Confidence            455667777777777765431   1 2  25667777777777777643321     1233 7888888888877643  


Q ss_pred             -CCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          80 -GIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        80 -~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                       .+..+++|+.|++++|.++.++.  .+.  ++|+.+++++|.+++.+.        +..+++|+.|+
T Consensus       247 ~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~Ls~N~l~~~p~--------~~~l~~L~~L~  302 (312)
T 1wwl_A          247 PSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLDLSYNRLDRNPS--------PDELPQVGNLS  302 (312)
T ss_dssp             SCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEECCSSCCCSCCC--------TTTSCEEEEEE
T ss_pred             hhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEECCCCCCCCChh--------HhhCCCCCEEe
Confidence             24456788888888888887664  232  678888888888877643        46677777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.39  E-value=2.6e-12  Score=92.59  Aligned_cols=84  Identities=21%  Similarity=0.233  Sum_probs=42.0

Q ss_pred             ccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEE
Q psy1563          40 KKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDL  115 (152)
Q Consensus        40 ~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l  115 (152)
                      ++|+.+++++|.++.++  .+..+. +|+.+++++|.++.++.  +..+++|+.|++++|.++.++.  .+..+++|+.+
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~l~~l~~L~~L  268 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVV  268 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT--TTTTCSSCCEE
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh--hhccCCCcCEE
Confidence            34444444444444332  233333 55555555555554432  4455555555665555555443  34455556666


Q ss_pred             EecCCCCcccc
Q psy1563         116 VFCGNPIVENL  126 (152)
Q Consensus       116 ~l~~n~~~~~~  126 (152)
                      ++++|++++.+
T Consensus       269 ~l~~N~i~~~~  279 (330)
T 1xku_A          269 YLHNNNISAIG  279 (330)
T ss_dssp             ECCSSCCCCCC
T ss_pred             ECCCCcCCccC
Confidence            66666555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=1e-12  Score=94.08  Aligned_cols=71  Identities=17%  Similarity=0.163  Sum_probs=44.1

Q ss_pred             ccceeeccccccCCc-cC-CCCC---CcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHh
Q psy1563          64 CLEELWISYNFIEKT-KG-IGSL---KKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR  138 (152)
Q Consensus        64 ~L~~l~l~~n~~~~l-~~-~~~~---~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  138 (152)
                      +|+.|++++|.++.. |. +..+   ++|++|++++|.++.+|.  .+  .++|+.+++++|.+++.+.        ...
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~~--------~~~  292 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAPQ--------PDE  292 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCCC--------TTS
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCch--------hhh
Confidence            677777777776655 32 3333   577777777777776653  22  2567777777777776432        345


Q ss_pred             CCCccccc
Q psy1563         139 LPRLKKLD  146 (152)
Q Consensus       139 l~~L~~l~  146 (152)
                      +++|+.|+
T Consensus       293 l~~L~~L~  300 (310)
T 4glp_A          293 LPEVDNLT  300 (310)
T ss_dssp             CCCCSCEE
T ss_pred             CCCccEEE
Confidence            66666653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.38  E-value=4.5e-12  Score=101.69  Aligned_cols=135  Identities=20%  Similarity=0.129  Sum_probs=105.1

Q ss_pred             hhhhhhhccCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCc-cccc-c-CccccccccceeeccccccCCc-
Q psy1563           5 EREKENLYKFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNM-IKTF-T-GLEPLGDCLEELWISYNFIEKT-   78 (152)
Q Consensus         5 ~~~~~~~~~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~-~~~~-~-~~~~~~~~L~~l~l~~n~~~~l-   78 (152)
                      ++.++.+..  -+++++.|++++|.++.+.  .+..+++|+.|++++|. +..+ + .+..+. +|+.|++++|.++.+ 
T Consensus        13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCEEECTTCCCCEEC
T ss_pred             CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-CCCEEECCCCcCcccC
Confidence            344555554  4678999999999998773  78899999999999994 4455 3 566776 999999999999877 


Q ss_pred             cC-CCCCCcccEEEcCCCccCC-cccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          79 KG-IGSLKKLKVLYMCHNSVKE-WGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        79 ~~-~~~~~~L~~l~l~~n~i~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +. +..+++|++|++++|.+++ .+....+..+++|+.|++++|.+.+..+.+     .+..+++|+.|+.
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-----~~~~L~~L~~L~L  155 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP-----SFGKLNSLKSIDF  155 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG-----GGGTCSSCCEEEE
T ss_pred             HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch-----hHhhCCCCCEEEC
Confidence            33 8899999999999999986 333334788999999999999998764321     2677888887753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.37  E-value=3.2e-12  Score=99.73  Aligned_cols=99  Identities=17%  Similarity=0.132  Sum_probs=47.1

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC-ccccc-------cccceeeccccccCCccC-CC--C
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG-LEPLG-------DCLEELWISYNFIEKTKG-IG--S   83 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~-~~~~~-------~~L~~l~l~~n~~~~l~~-~~--~   83 (152)
                      +++|+.|++++|.++.++  .+..+++|+.|++++|.++.+|. .....       ++|+.|++++|.++.+|. +.  .
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~  511 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT  511 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred             CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence            334555555555555444  12334555555555555554441 11110       045555555555554443 32  5


Q ss_pred             CCcccEEEcCCCccCCcccccccCCCCCccEEEe
Q psy1563          84 LKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVF  117 (152)
Q Consensus        84 ~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l  117 (152)
                      +++|+.|++++|.++.+|.  .+..++.|+.+++
T Consensus       512 l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~L  543 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSKFPT--QPLNSSTLKGFGI  543 (636)
T ss_dssp             CTTCCEEECCSSCCSSCCC--GGGGCSSCCEEEC
T ss_pred             CCCcCEEECCCCCCCCcCh--hhhcCCCCCEEEC
Confidence            5555555555555555432  3344555555555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.37  E-value=3.4e-12  Score=97.02  Aligned_cols=61  Identities=18%  Similarity=0.155  Sum_probs=26.9

Q ss_pred             ccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          64 CLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        64 ~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      +|+.+++++|.++.+|. +..+++|+.|++++|.++.++.. .+..+++|+.+++++|++...
T Consensus       422 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          422 RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH-HhccCCcccEEECcCCCCccc
Confidence            44444444444444432 33444444444444444444321 233444445555555544443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.37  E-value=1.2e-12  Score=102.10  Aligned_cols=126  Identities=15%  Similarity=0.125  Sum_probs=67.0

Q ss_pred             CCCCCCCcEEEccCCccc-cccCCcCCccCcEEEcCCCcccccc-Cccccccc-cceeeccccccCCccC-CCC--CCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIE-KISGLMSLKKLRILALGRNMIKTFT-GLEPLGDC-LEELWISYNFIEKTKG-IGS--LKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~-~~~~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~-L~~l~l~~n~~~~l~~-~~~--~~~L   87 (152)
                      +.++++|+.|++++|.++ .+|.+..+++|+.|++++|.++.+| .+..+. + |+.+++++|.++.+|. +..  +++|
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~-~~L~~L~Ls~N~l~~lp~~~~~~~l~~L  404 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT-EQVENLSFAHNKLKYIPNIFDAKSVSVM  404 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEEC-TTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred             hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhc-ccCcEEEccCCcCcccchhhhhcccCcc
Confidence            444555555555555554 4444444555555555555555444 333443 4 6666666666655543 222  2356


Q ss_pred             cEEEcCCCccCCcccccccC-------CCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          88 KVLYMCHNSVKEWGELNKIN-------DCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~-------~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +.+++++|.++.... ..+.       .+++|+.+++++|.+...+..      ++..+++|+.|+.
T Consensus       405 ~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~------~~~~l~~L~~L~L  464 (636)
T 4eco_A          405 SAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFPKE------LFSTGSPLSSINL  464 (636)
T ss_dssp             EEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH------HHHTTCCCSEEEC
T ss_pred             CEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcCCHH------HHccCCCCCEEEC
Confidence            666666666654321 1233       455677777777777754432      2445777776654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.36  E-value=3.2e-12  Score=101.59  Aligned_cols=127  Identities=24%  Similarity=0.197  Sum_probs=82.2

Q ss_pred             cCCCCCCCcEEEccCCcccc-cc-CCcCCccCcEEEcCCCccc-ccc-CccccccccceeeccccccCCc-cC-CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEK-IS-GLMSLKKLRILALGRNMIK-TFT-GLEPLGDCLEELWISYNFIEKT-KG-IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~-~~-~l~~~~~L~~l~l~~n~~~-~~~-~~~~~~~~L~~l~l~~n~~~~l-~~-~~~~~~   86 (152)
                      .+.++++|+.|++++|.++. +| .+..+++|+.+++++|.++ .+| .+..+. +|+.+++++|.+++. |. +..+++
T Consensus       413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~  491 (768)
T 3rgz_A          413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTN  491 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccCcCCHHHhcCCC
Confidence            34556667777777776653 33 5666667777777777665 334 344444 777777777777643 32 667777


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      |+.|++++|.+++.. +..++.+++|+.+++++|.+.+..+..      +..+++|+.||.
T Consensus       492 L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~------l~~l~~L~~L~L  545 (768)
T 3rgz_A          492 LNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAE------LGDCRSLIWLDL  545 (768)
T ss_dssp             CCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCEEECCGG------GGGCTTCCEEEC
T ss_pred             CCEEEccCCccCCcC-ChHHhcCCCCCEEECCCCcccCcCCHH------HcCCCCCCEEEC
Confidence            777777777777432 225666777778888888777655543      566777776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.36  E-value=6.1e-12  Score=90.72  Aligned_cols=84  Identities=30%  Similarity=0.373  Sum_probs=47.2

Q ss_pred             cCCCCCCCcEEEccCCccccc-c-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--CCCCCccc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKI-S-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLK   88 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~-~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~   88 (152)
                      .+.++++|+.|++++|.++.+ + .+..+++|+.|++++|.++.+|....  ++|+.+++++|.++.++.  +..+++|+
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            355666666666666666655 2 45566666666666666665542211  255556665555555533  44555555


Q ss_pred             EEEcCCCccC
Q psy1563          89 VLYMCHNSVK   98 (152)
Q Consensus        89 ~l~l~~n~i~   98 (152)
                      .|++++|.++
T Consensus       151 ~L~l~~n~l~  160 (332)
T 2ft3_A          151 CIEMGGNPLE  160 (332)
T ss_dssp             EEECCSCCCB
T ss_pred             EEECCCCccc
Confidence            5555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=8.6e-13  Score=101.77  Aligned_cols=110  Identities=21%  Similarity=0.294  Sum_probs=92.1

Q ss_pred             hhhhhhccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCc--cC-C
Q psy1563           6 REKENLYKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKT--KG-I   81 (152)
Q Consensus         6 ~~~~~~~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l--~~-~   81 (152)
                      ..++.+..+..+++|+.|++++|.++.+| .+..+++|+.|++++|.++.+|.+..+. +|+.|++++|.++.+  |. +
T Consensus       451 n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~-~L~~L~Ls~N~l~~~~~p~~l  529 (567)
T 1dce_A          451 KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP-RLQELLLCNNRLQQSAAIQPL  529 (567)
T ss_dssp             SCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCCSSSTTGGG
T ss_pred             CCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCC-CCcEEECCCCCCCCCCCcHHH
Confidence            34555666888999999999999999888 7889999999999999999999777787 999999999999988  43 7


Q ss_pred             CCCCcccEEEcCCCccCCccccc-c-cCCCCCccEEE
Q psy1563          82 GSLKKLKVLYMCHNSVKEWGELN-K-INDCPVLEDLV  116 (152)
Q Consensus        82 ~~~~~L~~l~l~~n~i~~~~~~~-~-~~~l~~L~~l~  116 (152)
                      ..+++|+.|++++|.+++.+... . ...+++|+.|+
T Consensus       530 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          530 VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            89999999999999999876421 1 22377787775

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.36  E-value=6.4e-12  Score=90.49  Aligned_cols=104  Identities=26%  Similarity=0.359  Sum_probs=59.9

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-CCCCCcccEEEc
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYM   92 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l   92 (152)
                      ++|+.|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.+++++|.++.+|. +..+++|+.+++
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence            34555555555555442  4556666666777666666554  234444 66666776666666643 556666666676


Q ss_pred             CCCccCCcccccccC------CCCCccEEEecCCCCc
Q psy1563          93 CHNSVKEWGELNKIN------DCPVLEDLVFCGNPIV  123 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~------~l~~L~~l~l~~n~~~  123 (152)
                      ++|.+++++.. .+.      ..+.+..+++.+|++.
T Consensus       271 ~~N~i~~~~~~-~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          271 HNNNISAIGSN-DFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CSSCCCCCCTT-SSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCcCCccChh-hcCCcccccccccccceEeecCccc
Confidence            66666665432 221      1345666666666664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.35  E-value=9.6e-12  Score=93.57  Aligned_cols=80  Identities=26%  Similarity=0.318  Sum_probs=44.7

Q ss_pred             CCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCcc
Q psy1563          18 NPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSV   97 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i   97 (152)
                      ++|++|++++|.++.+|.+..+++|+++++++|.++.+|...   ++|+.+++++|.++.++.+..+++|+.+++++|.+
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence            355666666666655555555666666666666655544321   25566666666555555555555555555555555


Q ss_pred             CCc
Q psy1563          98 KEW  100 (152)
Q Consensus        98 ~~~  100 (152)
                      +++
T Consensus       208 ~~l  210 (454)
T 1jl5_A          208 KKL  210 (454)
T ss_dssp             SSC
T ss_pred             CcC
Confidence            543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.35  E-value=3e-12  Score=92.32  Aligned_cols=122  Identities=24%  Similarity=0.316  Sum_probs=84.7

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-CCCCCcccEEEc
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYM   92 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l   92 (152)
                      ++|++|++++|.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.+++++|.++.+|. +..+++|+.+++
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l  271 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYL  271 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCCBCCTTGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCeecChhhhcCccCCEEEC
Confidence            46777777777777654  5677788888888888887665  344554 88888888888887765 677788888888


Q ss_pred             CCCccCCcccccccCC------CCCccEEEecCCCCc--cccchhHHHHHHHHhCCCcccccC
Q psy1563          93 CHNSVKEWGELNKIND------CPVLEDLVFCGNPIV--ENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~------l~~L~~l~l~~n~~~--~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++|.++.++.. .+..      ...++.+++.+|++.  +..+.      .+..+++|+.++.
T Consensus       272 ~~N~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~------~~~~l~~L~~l~l  327 (332)
T 2ft3_A          272 HTNNITKVGVN-DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA------TFRCVTDRLAIQF  327 (332)
T ss_dssp             CSSCCCBCCTT-SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG------GGTTBCCSTTEEC
T ss_pred             CCCCCCccChh-HccccccccccccccceEeecCcccccccCcc------cccccchhhhhhc
Confidence            88888876542 2222      356788888888876  33322      1456677776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=7.3e-12  Score=100.72  Aligned_cols=87  Identities=20%  Similarity=0.207  Sum_probs=45.8

Q ss_pred             CCCCCCCcEEEccCCccccccC---CcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CCCCCc-cc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IGSLKK-LK   88 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~---l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~-L~   88 (152)
                      +..+++|+.|++++|.++.+|.   +..+++|+.|++++|.++.+|.+..+. +|+.|++++|.++.+|. +..+++ |+
T Consensus       544 ~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~-~L~~L~Ls~N~l~~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNV-KLTDLKLDYNQIEEIPEDFCAFTDQVE  622 (876)
T ss_dssp             TTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTS-EESEEECCSSCCSCCCTTSCEECTTCC
T ss_pred             ccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCC-cceEEECcCCccccchHHHhhccccCC
Confidence            3344455555555555554443   455555555555555555555444443 55555555555554442 444454 55


Q ss_pred             EEEcCCCccCCcc
Q psy1563          89 VLYMCHNSVKEWG  101 (152)
Q Consensus        89 ~l~l~~n~i~~~~  101 (152)
                      .|++++|.++.+|
T Consensus       623 ~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          623 GLGFSHNKLKYIP  635 (876)
T ss_dssp             EEECCSSCCCSCC
T ss_pred             EEECcCCCCCcCc
Confidence            5555555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.34  E-value=1.3e-11  Score=94.85  Aligned_cols=62  Identities=18%  Similarity=0.123  Sum_probs=31.5

Q ss_pred             ccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          64 CLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        64 ~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      +|+.+++++|.++.+|. +..+++|+.|++++|.++.++.. .+..+++|+.+++++|++....
T Consensus       451 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG-VFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             TCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT-STTTCTTCCCEECCSCCBCCCH
T ss_pred             cCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH-HHhcCCCCCEEEecCCCcCCCc
Confidence            45555555555554433 33555555555555555554431 2444555555555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.33  E-value=8.9e-12  Score=96.13  Aligned_cols=97  Identities=16%  Similarity=0.204  Sum_probs=39.7

Q ss_pred             CCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcc-------cEEE
Q psy1563          19 PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL-------KVLY   91 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L-------~~l~   91 (152)
                      +|+.|++++|.++.+|.  .+++|+.|++++|.++.+|.+.   ++|+.|++++|.++.+|.+..  +|       +.|+
T Consensus       141 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~l~---~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~  213 (571)
T 3cvr_A          141 LLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPELP---ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFR  213 (571)
T ss_dssp             TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCC----------CCEEEE
T ss_pred             cccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcchhh---CCCCEEECcCCCCCchhhHHH--hhhcccccceEEe
Confidence            34444444444433332  2334444444444444433311   244444444444444433211  33       4445


Q ss_pred             cCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          92 MCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        92 l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      +++|.|+.+|.  .+..+++|+.+++++|++++
T Consensus       214 Ls~N~l~~lp~--~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          214 CRENRITHIPE--NILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CCSSCCCCCCG--GGGGSCTTEEEECCSSSCCH
T ss_pred             cCCCcceecCH--HHhcCCCCCEEEeeCCcCCC
Confidence            55555444432  22334455555555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.31  E-value=2.6e-12  Score=91.97  Aligned_cols=127  Identities=13%  Similarity=-0.034  Sum_probs=77.6

Q ss_pred             CCCCcEEEccCCccccc-c-CC--cCCccCcEEEcCCCccccc-c-----CccccccccceeeccccccCCccC--CCCC
Q psy1563          17 PNPNTKLSLSTNLIEKI-S-GL--MSLKKLRILALGRNMIKTF-T-----GLEPLGDCLEELWISYNFIEKTKG--IGSL   84 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~-~-~l--~~~~~L~~l~l~~n~~~~~-~-----~~~~~~~~L~~l~l~~n~~~~l~~--~~~~   84 (152)
                      ++.|++|++++|.+... + .+  ..+++|++|++++|.++.. +     .+..+. +|+.|++++|.++.++.  +..+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCCTTSCCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhhHHHhccC
Confidence            45578888888877644 3 44  6677788888888777642 1     112233 77777777777766643  5677


Q ss_pred             CcccEEEcCCCccCC---cccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          85 KKLKVLYMCHNSVKE---WGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        85 ~~L~~l~l~~n~i~~---~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++|++|++++|.+..   ++....+..+++|+.|++++|.++..+   .....++..+++|+.||.
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---~~~~~l~~~l~~L~~L~L  231 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT---GVCAALAAAGVQPHSLDL  231 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH---HHHHHHHHHTCCCSSEEC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH---HHHHHHHhcCCCCCEEEC
Confidence            777777777777653   222223345667777777777775432   111223456666666643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.31  E-value=3e-12  Score=101.31  Aligned_cols=103  Identities=20%  Similarity=0.216  Sum_probs=86.6

Q ss_pred             CCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccC-CCCCCcccEEEcCCCccCCcccccccCCCCCc
Q psy1563          35 GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYMCHNSVKEWGELNKINDCPVL  112 (152)
Q Consensus        35 ~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L  112 (152)
                      .+..++.|+.|++++|.+..++ .+..+. +|+.|+|++|.++.+|. +..+++|+.|++++|.|+.+|.  .+..+++|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L  295 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFNISANIFKYD-FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA--ELGSCFQL  295 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSCCCGGGGGCC-SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS--SGGGGTTC
T ss_pred             hhccCCCCcEEECCCCCCCCCChhhcCCC-CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh--hhcCCCCC
Confidence            5678899999999999999887 566666 99999999999998875 8899999999999999998764  67889999


Q ss_pred             cEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563         113 EDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus       113 ~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +.|++++|.+...+..       ++.+++|+.|+.
T Consensus       296 ~~L~L~~N~l~~lp~~-------~~~l~~L~~L~L  323 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWE-------FGNLCNLQFLGV  323 (727)
T ss_dssp             SEEECCSSCCCCCCSS-------TTSCTTCCCEEC
T ss_pred             CEEECCCCCCCccChh-------hhcCCCccEEeC
Confidence            9999999999866542       678888888854

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.31  E-value=2.7e-11  Score=91.14  Aligned_cols=109  Identities=19%  Similarity=0.290  Sum_probs=69.6

Q ss_pred             hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcc
Q psy1563           8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL   87 (152)
Q Consensus         8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L   87 (152)
                      ++.+..+.++++|++|++++|+++.+|..  .++|+++++++|.++.+|.+..+. +|+.+++++|.++.++..  .++|
T Consensus       143 l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~-~L~~L~l~~N~l~~l~~~--~~~L  217 (454)
T 1jl5_A          143 LEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLP-FLTAIYADNNSLKKLPDL--PLSL  217 (454)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCT-TCCEEECCSSCCSSCCCC--CTTC
T ss_pred             CCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCC-CCCEEECCCCcCCcCCCC--cCcc
Confidence            34455677888888888888888776632  247777777777777766665555 666677766666655432  2456


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      +.|++++|.++.++.   +..+++|+.+++++|.+.+
T Consensus       218 ~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          218 ESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSS
T ss_pred             cEEECcCCcCCcccc---cCCCCCCCEEECCCCcCCc
Confidence            666666666655442   4455556666666665554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.30  E-value=1.2e-11  Score=98.36  Aligned_cols=101  Identities=26%  Similarity=0.297  Sum_probs=56.4

Q ss_pred             CCccCcEEEcCCCcccccc--C---ccccccccceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCc
Q psy1563          38 SLKKLRILALGRNMIKTFT--G---LEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVL  112 (152)
Q Consensus        38 ~~~~L~~l~l~~n~~~~~~--~---~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L  112 (152)
                      .+++|++|++++|.++...  .   +..+. +|+.+++++|.++.......+++|++|++++|.++....  .+..+++|
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L  225 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCG-ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDCSAL  225 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCT-TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCC--BCTTCCSC
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCC-CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCc--ccccCCCC
Confidence            4444444444444444322  1   22333 555555555555444334566777777777777665332  25667777


Q ss_pred             cEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563         113 EDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus       113 ~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +.+++++|.+.+..+.      .+..+++|+.|+.
T Consensus       226 ~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L  254 (768)
T 3rgz_A          226 QHLDISGNKLSGDFSR------AISTCTELKLLNI  254 (768)
T ss_dssp             CEEECCSSCCCSCHHH------HTTTCSSCCEEEC
T ss_pred             CEEECcCCcCCCcccH------HHhcCCCCCEEEC
Confidence            7777777777655432      2566667766643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=1.5e-11  Score=98.86  Aligned_cols=99  Identities=13%  Similarity=0.146  Sum_probs=42.8

Q ss_pred             CCcEEEccCCcccccc-C-CcCCccCcEEEcCCCccccccC-ccccc-------cccceeeccccccCCccC-CC--CCC
Q psy1563          19 PNTKLSLSTNLIEKIS-G-LMSLKKLRILALGRNMIKTFTG-LEPLG-------DCLEELWISYNFIEKTKG-IG--SLK   85 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~-~-l~~~~~L~~l~l~~n~~~~~~~-~~~~~-------~~L~~l~l~~n~~~~l~~-~~--~~~   85 (152)
                      +|+.|++++|.++.+| . +..+++|+.|++++|.++.+|. +....       ++|+.|++++|.++.+|. +.  .++
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~  753 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP  753 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence            4444444444444443 1 2234445555555554444431 11100       145555555555544432 22  445


Q ss_pred             cccEEEcCCCccCCcccccccCCCCCccEEEecC
Q psy1563          86 KLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCG  119 (152)
Q Consensus        86 ~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~  119 (152)
                      +|+.|++++|.++.+|.  .+..+++|+.|++++
T Consensus       754 ~L~~L~Ls~N~L~~lp~--~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          754 YLSNMDVSYNCFSSFPT--QPLNSSQLKAFGIRH  785 (876)
T ss_dssp             TCCEEECCSSCCSSCCC--GGGGCTTCCEEECCC
T ss_pred             CcCEEEeCCCCCCccch--hhhcCCCCCEEECCC
Confidence            55555555555544332  233444444444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.29  E-value=1e-11  Score=95.85  Aligned_cols=110  Identities=14%  Similarity=0.027  Sum_probs=89.9

Q ss_pred             CCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCccC
Q psy1563          19 PNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVK   98 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~   98 (152)
                      +|+.|++++|.++.+|.  .+++|+.|++++|.++.+|.  .+. +|+.|++++|.++.+|.+.  ++|+.|++++|.|+
T Consensus       121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~-~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE--LPT-SLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCT-TCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC--cCC-CcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC
Confidence            88899999999888876  67899999999999998876  344 9999999999999987744  89999999999999


Q ss_pred             CcccccccCCCCCc-------cEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          99 EWGELNKINDCPVL-------EDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        99 ~~~~~~~~~~l~~L-------~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      .+|.   +..  +|       +.|++++|.++..+..       +..+++|+.|+.
T Consensus       194 ~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-------l~~l~~L~~L~L  237 (571)
T 3cvr_A          194 SLPA---VPV--RNHHSEETEIFFRCRENRITHIPEN-------ILSLDPTCTIIL  237 (571)
T ss_dssp             SCCC---CC----------CCEEEECCSSCCCCCCGG-------GGGSCTTEEEEC
T ss_pred             chhh---HHH--hhhcccccceEEecCCCcceecCHH-------HhcCCCCCEEEe
Confidence            8875   332  56       9999999999976642       456888887754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=99.28  E-value=1.7e-11  Score=86.11  Aligned_cols=113  Identities=28%  Similarity=0.354  Sum_probs=85.9

Q ss_pred             CCccCcE--EEcCCCccccccCcc----ccccccceeeccccccCCccCC----CCCCcccEEEcCCCccCCcccccccC
Q psy1563          38 SLKKLRI--LALGRNMIKTFTGLE----PLGDCLEELWISYNFIEKTKGI----GSLKKLKVLYMCHNSVKEWGELNKIN  107 (152)
Q Consensus        38 ~~~~L~~--l~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~~~~l~~~----~~~~~L~~l~l~~n~i~~~~~~~~~~  107 (152)
                      ..+.|..  ++++.|....++...    ...++|+.|+|++|.++.++.+    ..+++|+.|+|++|.|+++..+..+.
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~  218 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK  218 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT
T ss_pred             CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc
Confidence            3344443  555666544433211    1224899999999999987643    47899999999999999987666666


Q ss_pred             CCCCccEEEecCCCCccccc-hhHHHHHHHHhCCCcccccCcccC
Q psy1563         108 DCPVLEDLVFCGNPIVENLE-ESAYRVEIKKRLPRLKKLDGEVLP  151 (152)
Q Consensus       108 ~l~~L~~l~l~~n~~~~~~~-~~~~~~~~~~~l~~L~~l~~~~~~  151 (152)
                      .+ .|+.|++.+|++++..+ .+.|+..++..+|+|+.||+.+|+
T Consensus       219 ~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~  262 (267)
T 3rw6_A          219 GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP  262 (267)
T ss_dssp             TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred             cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCC
Confidence            66 89999999999987544 347899999999999999999886

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.23  E-value=9.6e-11  Score=91.29  Aligned_cols=58  Identities=22%  Similarity=0.190  Sum_probs=30.9

Q ss_pred             ccceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          64 CLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        64 ~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      +|+.|++++|.++.+|.  .+++|+.|++++|.++.+|.  .+..+++|+.+++++|++.+.
T Consensus       242 ~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~--~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          242 ELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCG--GGGGSCTTCEEECCSCCCCHH
T ss_pred             cCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCH--HHhhccccCEEEecCCCCCCc
Confidence            45555555555554443  34555555555555555442  344555566666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=9.8e-11  Score=77.28  Aligned_cols=84  Identities=23%  Similarity=0.300  Sum_probs=74.1

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCccccccC--ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFTG--LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+.++.|++++|.++.++  .+..+++|+.|++++|.++.++.  +..+. +|+.|++++|.++.++.  +..+++|+.|
T Consensus        32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT-QLTQLDLNDNHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc-hhhEEECCCCccceeCHHHhccccCCCEE
Confidence            478999999999999884  68899999999999999999873  35666 99999999999998865  7889999999


Q ss_pred             EcCCCccCCcc
Q psy1563          91 YMCHNSVKEWG  101 (152)
Q Consensus        91 ~l~~n~i~~~~  101 (152)
                      ++++|.+...+
T Consensus       111 ~L~~N~~~c~~  121 (174)
T 2r9u_A          111 YLYNNPWDCEC  121 (174)
T ss_dssp             ECCSSCBCTTB
T ss_pred             EeCCCCccccc
Confidence            99999998655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=1.1e-10  Score=76.71  Aligned_cols=84  Identities=24%  Similarity=0.310  Sum_probs=73.7

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      .+.++.|++++|.++.++  .+..+++|++|++++|.++.++ . +..+. +|+.|++++|.++.++.  +..+++|+.|
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT-QLTQLSLNDNQLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC-CCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence            478999999999999884  6889999999999999999887 3 45665 99999999999998864  7889999999


Q ss_pred             EcCCCccCCcc
Q psy1563          91 YMCHNSVKEWG  101 (152)
Q Consensus        91 ~l~~n~i~~~~  101 (152)
                      ++++|.++...
T Consensus       108 ~L~~N~~~c~c  118 (170)
T 3g39_A          108 WLLNNPWDCAC  118 (170)
T ss_dssp             ECCSSCBCTTB
T ss_pred             EeCCCCCCCCc
Confidence            99999988654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=2.2e-10  Score=82.97  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=70.7

Q ss_pred             EEEccCC-ccccccCCcCCccCcEEEcCC-Ccccccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcCCC
Q psy1563          22 KLSLSTN-LIEKISGLMSLKKLRILALGR-NMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHN   95 (152)
Q Consensus        22 ~L~l~~n-~l~~~~~l~~~~~L~~l~l~~-n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n   95 (152)
                      .++.+++ .++.+|.+..+++|+.|++++ |.++.++  .+..+. +|+.|+|++|.++.++.  +..+++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4566666 677776666677778888875 7777665  355565 78888888887777643  567778888888888


Q ss_pred             ccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          96 SVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        96 ~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      .++.++.. .+..+. |+.|++.+|++.....
T Consensus        91 ~l~~~~~~-~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           91 ALESLSWK-TVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCSCCCST-TTCSCC-CCEEECCSSCCCCCGG
T ss_pred             ccceeCHH-HcccCC-ceEEEeeCCCccCCCc
Confidence            87776632 333344 7788888887775543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.17  E-value=1.1e-10  Score=90.98  Aligned_cols=112  Identities=22%  Similarity=0.141  Sum_probs=89.6

Q ss_pred             CCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCc
Q psy1563          17 PNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNS   96 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~   96 (152)
                      +++|+.|++++|.++.++..  .++|+.|++++|.++.++..  . ++|+.|++++|.++.++  ..+++|+.|++++|.
T Consensus       180 ~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~--~-~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          180 PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL--P-SGLKELIVSGNRLTSLP--VLPSELKELMVSGNR  252 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC--C-TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSC
T ss_pred             CCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC--C-CCCCEEEccCCccCcCC--CCCCcCcEEECCCCC
Confidence            47788888888888777632  46788888888888877643  2 48999999999999887  456899999999999


Q ss_pred             cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          97 VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        97 i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++.++.     .+++|+.|++++|.+...+. .      +..+++|+.|+.
T Consensus       253 L~~lp~-----~~~~L~~L~Ls~N~L~~lp~-~------l~~l~~L~~L~L  291 (622)
T 3g06_A          253 LTSLPM-----LPSGLLSLSVYRNQLTRLPE-S------LIHLSSETTVNL  291 (622)
T ss_dssp             CSCCCC-----CCTTCCEEECCSSCCCSCCG-G------GGGSCTTCEEEC
T ss_pred             CCcCCc-----ccccCcEEeCCCCCCCcCCH-H------HhhccccCEEEe
Confidence            998774     56789999999999996643 2      678888887754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.17  E-value=7.3e-14  Score=94.04  Aligned_cols=119  Identities=26%  Similarity=0.260  Sum_probs=92.4

Q ss_pred             CcEEEccCC--cccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-CCCCCcccEEEcCCC
Q psy1563          20 NTKLSLSTN--LIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLYMCHN   95 (152)
Q Consensus        20 l~~L~l~~n--~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~l~~n   95 (152)
                      +....+.+.  .++.++ .+..+++|+.|++++|.++.+|.+..+. +|+.+++++|.++.++. +..+++|+.|++++|
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence            444444433  334444 5778899999999999999888666676 99999999999998876 456689999999999


Q ss_pred             ccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          96 SVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        96 ~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      .+++++   .+..+++|+.+++++|.+...+..     ..+..+++|+.|+.
T Consensus       104 ~l~~l~---~~~~l~~L~~L~l~~N~i~~~~~~-----~~l~~l~~L~~L~l  147 (198)
T 1ds9_A          104 QIASLS---GIEKLVNLRVLYMSNNKITNWGEI-----DKLAALDKLEDLLL  147 (198)
T ss_dssp             ECCCHH---HHHHHHHSSEEEESEEECCCHHHH-----HHHTTTTTCSEEEE
T ss_pred             cCCcCC---ccccCCCCCEEECCCCcCCchhHH-----HHHhcCCCCCEEEe
Confidence            999876   456788999999999999864321     13677888887753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.15  E-value=1.7e-10  Score=83.85  Aligned_cols=127  Identities=16%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             CCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCC-Ccccccc--CccccccccceeeccccccCCccC-CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGR-NMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~-n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L   87 (152)
                      +..+++|+.|++++|.++.++  .+....++..+++.+ +.+..++  .+......++.+++++|.++.++. .....++
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L  179 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL  179 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred             hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence            344444555555544444433  122222333344322 2333333  122222257778888888887754 4455678


Q ss_pred             cEEEcC-CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          88 KVLYMC-HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        88 ~~l~l~-~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +.+.+. +|.++.++. ..+..+++|+.+++++|.++..++..      +..+++|+.++.
T Consensus       180 ~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~~lp~~~------~~~L~~L~~l~~  233 (350)
T 4ay9_X          180 DELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSLPSYG------LENLKKLRARST  233 (350)
T ss_dssp             EEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCCCCCSSS------CTTCCEEECTTC
T ss_pred             hHHhhccCCcccCCCH-HHhccCcccchhhcCCCCcCccChhh------hccchHhhhccC
Confidence            888876 467887764 35677888999999999888766532      344555554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=1.7e-10  Score=83.53  Aligned_cols=95  Identities=20%  Similarity=0.265  Sum_probs=78.2

Q ss_pred             hhhhhccCCCCCCCcEEEccC-Ccccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-
Q psy1563           7 EKENLYKFKGPNPNTKLSLST-NLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-   80 (152)
Q Consensus         7 ~~~~~~~~~~l~~l~~L~l~~-n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-   80 (152)
                      .++.+..+..+++|+.|++++ |.++.++  .+..+++|+.|++++|.++.++  .+..+. +|+.|+|++|.++.++. 
T Consensus        20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECCSSCCSCCCST
T ss_pred             CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc-CCCEEeCCCCccceeCHH
Confidence            455565578888999999996 9999886  5889999999999999999886  346676 99999999999998864 


Q ss_pred             -CCCCCcccEEEcCCCccCCcccc
Q psy1563          81 -IGSLKKLKVLYMCHNSVKEWGEL  103 (152)
Q Consensus        81 -~~~~~~L~~l~l~~n~i~~~~~~  103 (152)
                       +..+. |+.|++.+|.+.....+
T Consensus        99 ~~~~~~-L~~l~l~~N~~~c~c~l  121 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNPLHCSCAL  121 (347)
T ss_dssp             TTCSCC-CCEEECCSSCCCCCGGG
T ss_pred             HcccCC-ceEEEeeCCCccCCCcc
Confidence             44444 99999999999864443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.09  E-value=2e-11  Score=87.87  Aligned_cols=14  Identities=29%  Similarity=0.446  Sum_probs=5.9

Q ss_pred             CCCCcEEEccCCcc
Q psy1563          17 PNPNTKLSLSTNLI   30 (152)
Q Consensus        17 l~~l~~L~l~~n~l   30 (152)
                      +++|+.|++++|.+
T Consensus        92 ~~~L~~L~L~~~~l  105 (336)
T 2ast_B           92 PFRVQHMDLSNSVI  105 (336)
T ss_dssp             CBCCCEEECTTCEE
T ss_pred             CCCCCEEEccCCCc
Confidence            34444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.05  E-value=1.5e-10  Score=84.47  Aligned_cols=85  Identities=18%  Similarity=0.206  Sum_probs=37.9

Q ss_pred             CCCCC-CCcEEEccCCcccccc--CCcCC-----ccCcEEEcCCCcccccc--C----ccccccccceeeccccccCCcc
Q psy1563          14 FKGPN-PNTKLSLSTNLIEKIS--GLMSL-----KKLRILALGRNMIKTFT--G----LEPLGDCLEELWISYNFIEKTK   79 (152)
Q Consensus        14 ~~~l~-~l~~L~l~~n~l~~~~--~l~~~-----~~L~~l~l~~n~~~~~~--~----~~~~~~~L~~l~l~~n~~~~l~   79 (152)
                      +..++ +|++|++++|.++...  .+..+     ++|+.|++++|.++..+  .    +....++|+.|++++|.++..+
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            33444 5555555555554431  22221     55555555555554322  1    1111025555555555554332


Q ss_pred             C------CCC-CCcccEEEcCCCccC
Q psy1563          80 G------IGS-LKKLKVLYMCHNSVK   98 (152)
Q Consensus        80 ~------~~~-~~~L~~l~l~~n~i~   98 (152)
                      .      +.. .++|+.|++++|.++
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHHHHhCCCceeEEEccCCcCC
Confidence            1      112 235555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.04  E-value=4.5e-11  Score=87.83  Aligned_cols=127  Identities=19%  Similarity=0.174  Sum_probs=67.5

Q ss_pred             CCCcEEEccCCccc--ccc----CCcCCccCcEEEcCCCcccc------cc-CccccccccceeeccccccC-----Ccc
Q psy1563          18 NPNTKLSLSTNLIE--KIS----GLMSLKKLRILALGRNMIKT------FT-GLEPLGDCLEELWISYNFIE-----KTK   79 (152)
Q Consensus        18 ~~l~~L~l~~n~l~--~~~----~l~~~~~L~~l~l~~n~~~~------~~-~~~~~~~~L~~l~l~~n~~~-----~l~   79 (152)
                      ++|+.|++++|.++  .++    .+..+++|++|++++|.++.      ++ .+..+. +|+.|++++|.++     .++
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALA  237 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHH
Confidence            56777777777664  222    33455667777777776651      23 344444 6677777776663     222


Q ss_pred             C-CCCCCcccEEEcCCCccCCcccc---ccc--CCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          80 G-IGSLKKLKVLYMCHNSVKEWGEL---NKI--NDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        80 ~-~~~~~~L~~l~l~~n~i~~~~~~---~~~--~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      . +..+++|+.|++++|.+++....   ..+  +.+++|+.|++++|.+..... ..+...+...+++|+.|+
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~-~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV-RTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH-HHHHHHHHHHCTTCCEEE
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH-HHHHHHHHhcCCCceEEE
Confidence            2 45566677777777666643110   122  235666677777766654200 011122224566666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.04  E-value=2.5e-10  Score=82.08  Aligned_cols=124  Identities=11%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             CCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccc--cc-CccccccccceeeccccccCCc-c-CCCCCCcccEEE
Q psy1563          18 NPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKT--FT-GLEPLGDCLEELWISYNFIEKT-K-GIGSLKKLKVLY   91 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~--~~-~~~~~~~~L~~l~l~~n~~~~l-~-~~~~~~~L~~l~   91 (152)
                      +.++.+++++|.+.... .+..+++|+.+++++|.++.  ++ .+..+. +|+.|++++|.++.. + .+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            67889999999887664 66678999999999998864  44 334454 889999988877633 2 256688888888


Q ss_pred             cCCC-ccCCcccccccCCCCCccEEEecCC-CCccccchhHHHHHHHHhCC-CcccccC
Q psy1563          92 MCHN-SVKEWGELNKINDCPVLEDLVFCGN-PIVENLEESAYRVEIKKRLP-RLKKLDG  147 (152)
Q Consensus        92 l~~n-~i~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~~~~~~~l~-~L~~l~~  147 (152)
                      +++| .+++......+..+++|+.+++++| .+.+.     .....+..++ +|+.|+.
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCCEEEC
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCCEEEe
Confidence            8888 6764221223456777888888888 66532     1122355666 6666644

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.01  E-value=3.6e-10  Score=83.01  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=50.6

Q ss_pred             CCCCCcEEEccCCcccc------cc-CCcCCccCcEEEcCCCccc-----ccc-CccccccccceeeccccccCCc----
Q psy1563          16 GPNPNTKLSLSTNLIEK------IS-GLMSLKKLRILALGRNMIK-----TFT-GLEPLGDCLEELWISYNFIEKT----   78 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~------~~-~l~~~~~L~~l~l~~n~~~-----~~~-~~~~~~~~L~~l~l~~n~~~~l----   78 (152)
                      .+++|+.|++++|.++.      .+ .+..+++|+.|++++|.++     .++ .+..+. +|+.|++++|.++..    
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEEECCCCCCchhhHHH
Confidence            34455555555555541      22 4445555555555555553     222 223333 555555555555432    


Q ss_pred             -cC-C--CCCCcccEEEcCCCccCC-----ccccccc-CCCCCccEEEecCCCCccc
Q psy1563          79 -KG-I--GSLKKLKVLYMCHNSVKE-----WGELNKI-NDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        79 -~~-~--~~~~~L~~l~l~~n~i~~-----~~~~~~~-~~l~~L~~l~l~~n~~~~~  125 (152)
                       +. +  +.+++|+.|++++|.++.     ++.  .+ ..+++|+.+++.+|++.+.
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--VIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH--HHHhcCCCceEEEccCCcCCcc
Confidence             11 1  224555555555555554     221  12 2345555555555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=3.8e-10  Score=82.35  Aligned_cols=131  Identities=19%  Similarity=0.206  Sum_probs=90.1

Q ss_pred             CCCCCCcEEEccCCcccccc------CCcCCc-cCcEEEcCCCcccccc--Ccccc----ccccceeeccccccCCccC-
Q psy1563          15 KGPNPNTKLSLSTNLIEKIS------GLMSLK-KLRILALGRNMIKTFT--GLEPL----GDCLEELWISYNFIEKTKG-   80 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~------~l~~~~-~L~~l~l~~n~~~~~~--~~~~~----~~~L~~l~l~~n~~~~l~~-   80 (152)
                      ...++|++|++++|.++..+      .+..++ +|+.|++++|.++...  .+...    .++|+.|++++|.++.... 
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            34456999999999998653      355777 8999999999998653  33332    1389999999999876532 


Q ss_pred             -----CCCC-CcccEEEcCCCccCCccccc---ccCC-CCCccEEEecCCCCccccchhHHHHHHHHhCC-CcccccC
Q psy1563          81 -----IGSL-KKLKVLYMCHNSVKEWGELN---KIND-CPVLEDLVFCGNPIVENLEESAYRVEIKKRLP-RLKKLDG  147 (152)
Q Consensus        81 -----~~~~-~~L~~l~l~~n~i~~~~~~~---~~~~-l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~-~L~~l~~  147 (152)
                           +..+ ++|+.|++++|.+++.+...   .+.. .+.|+.|++++|.+.+...  ......+..++ +|+.|+.
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~~~l~~~~~~L~~L~L  174 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS--DELIQILAAIPANVNSLNL  174 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH--HHHHHHHhcCCccccEeee
Confidence                 3344 79999999999998765321   1233 3578888888888875432  22222334444 6666643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=8.9e-09  Score=74.13  Aligned_cols=54  Identities=24%  Similarity=0.233  Sum_probs=28.6

Q ss_pred             ccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCcc-EEEecC
Q psy1563          64 CLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLE-DLVFCG  119 (152)
Q Consensus        64 ~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~-~l~l~~  119 (152)
                      +|+.+++++|.++.++.  +..+++|+.+.+.+| ++.++. ..|..+.+|+ .+.+..
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc
Confidence            55556666555555543  455555666655554 444442 2444555555 555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.90  E-value=5.6e-10  Score=83.43  Aligned_cols=130  Identities=15%  Similarity=0.049  Sum_probs=62.7

Q ss_pred             CCCCCCcEEEccCCccccc-----c-CCcCCccCcEEEcCCCccccc--cCccccc----cccceeeccccccCCc----
Q psy1563          15 KGPNPNTKLSLSTNLIEKI-----S-GLMSLKKLRILALGRNMIKTF--TGLEPLG----DCLEELWISYNFIEKT----   78 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~-----~-~l~~~~~L~~l~l~~n~~~~~--~~~~~~~----~~L~~l~l~~n~~~~l----   78 (152)
                      ..+++++.|++++|.++..     + .+..+++|+++++++|.++..  ..+....    ++|+.+++++|.++..    
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            3455666666666666522     2 344556666666666665532  1111111    1466666666665531    


Q ss_pred             -c-CCCCCCcccEEEcCCCccCCcccc--c--ccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          79 -K-GIGSLKKLKVLYMCHNSVKEWGEL--N--KINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        79 -~-~~~~~~~L~~l~l~~n~i~~~~~~--~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                       + .+..+++|+.|++++|.+++....  .  .....++|+.+++++|.+.+...  ......+..+++|+.|+
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~  176 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--EPLASVLRAKPDFKELT  176 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--HHHHHHHHHCTTCCEEE
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--HHHHHHHhhCCCCCEEE
Confidence             1 145566666666666665532110  0  01123345566666555554321  11222344455555543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.84  E-value=6.4e-10  Score=83.15  Aligned_cols=14  Identities=29%  Similarity=0.342  Sum_probs=5.7

Q ss_pred             CCcccEEEcCCCcc
Q psy1563          84 LKKLKVLYMCHNSV   97 (152)
Q Consensus        84 ~~~L~~l~l~~n~i   97 (152)
                      +++|+.|++++|.+
T Consensus       283 ~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          283 KESLKELSLAGNEL  296 (461)
T ss_dssp             CTTCCEEECTTCCC
T ss_pred             CCCcceEECCCCCC
Confidence            33444444444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.84  E-value=9.9e-09  Score=74.54  Aligned_cols=84  Identities=14%  Similarity=0.163  Sum_probs=57.5

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccc-cc--Cccccccccc-eeeccccccCCccC--CCCCCccc
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKT-FT--GLEPLGDCLE-ELWISYNFIEKTKG--IGSLKKLK   88 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~-~~--~~~~~~~~L~-~l~l~~n~~~~l~~--~~~~~~L~   88 (152)
                      .+++++|++++|+|+.++  .+..+++|++|++++|.+.. ++  .+..+. ++. .+.++.|.++.++.  +..+++|+
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~-~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT-TCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch-hhhhhhcccCCcccccCchhhhhccccc
Confidence            357889999999998886  57888999999999888743 44  233444 443 34555666666633  56677777


Q ss_pred             EEEcCCCccCCcc
Q psy1563          89 VLYMCHNSVKEWG  101 (152)
Q Consensus        89 ~l~l~~n~i~~~~  101 (152)
                      ++++++|.++..+
T Consensus       108 ~L~l~~n~l~~~~  120 (350)
T 4ay9_X          108 YLLISNTGIKHLP  120 (350)
T ss_dssp             EEEEEEECCSSCC
T ss_pred             cccccccccccCC
Confidence            7777777666544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.76  E-value=1.8e-09  Score=79.35  Aligned_cols=129  Identities=15%  Similarity=0.118  Sum_probs=75.2

Q ss_pred             CCCCcEEEccCCccccc--cC-CcCCccCcEEEcCCCcccccc--Ccc----ccccccceeeccccccCCccC------C
Q psy1563          17 PNPNTKLSLSTNLIEKI--SG-LMSLKKLRILALGRNMIKTFT--GLE----PLGDCLEELWISYNFIEKTKG------I   81 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~--~~-l~~~~~L~~l~l~~n~~~~~~--~~~----~~~~~L~~l~l~~n~~~~l~~------~   81 (152)
                      .+.|+.|++++|.++..  .. ...+++|+.|++++|.++...  .+.    ...+.|+.|++++|.++....      +
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            35777777777777543  22 223456777777777776432  111    111367888888887754211      3


Q ss_pred             CCCCcccEEEcCCCccCCccc---ccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          82 GSLKKLKVLYMCHNSVKEWGE---LNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        82 ~~~~~L~~l~l~~n~i~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ...++|++|++++|.|++...   ...+...+.|+.|++++|.+.+...  ......+...++|+.||.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~--~~l~~~L~~~~~L~~L~L  246 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA--LALARAAREHPSLELLHL  246 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--HHHHHHHHHCSSCCEEEC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--HHHHHHHHhCCCCCEEec
Confidence            456778888888887765321   1123445677888888887764322  222333456677777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=5.3e-08  Score=70.06  Aligned_cols=84  Identities=15%  Similarity=0.156  Sum_probs=39.7

Q ss_pred             CccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCccc-EEEcCCCccCCcccccccCCCCCcc
Q psy1563          39 LKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLK-VLYMCHNSVKEWGELNKINDCPVLE  113 (152)
Q Consensus        39 ~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~-~l~l~~n~i~~~~~~~~~~~l~~L~  113 (152)
                      +++|+.+++++|.++.++  .+..+. +|+.++++.| ++.++.  +..+.+|+ .+.+.+ .++.++. ..|..|++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~-~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKK-YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCC-CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhCCccCC
Confidence            444555555555555444  233333 5555555544 443432  44555555 555544 4444432 2444555555


Q ss_pred             EEEecCCCCcccc
Q psy1563         114 DLVFCGNPIVENL  126 (152)
Q Consensus       114 ~l~l~~n~~~~~~  126 (152)
                      .+++.+|.+....
T Consensus       301 ~l~l~~n~i~~I~  313 (329)
T 3sb4_A          301 YVLATGDKITTLG  313 (329)
T ss_dssp             EEEECSSCCCEEC
T ss_pred             EEEeCCCccCccc
Confidence            5555555554433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.59  E-value=7.1e-09  Score=76.15  Aligned_cols=130  Identities=12%  Similarity=0.074  Sum_probs=91.0

Q ss_pred             CCCCcEEEccCCcccccc--C----Cc-CCccCcEEEcCCCccccc--cCccccccccceeeccccccCCccC--C----
Q psy1563          17 PNPNTKLSLSTNLIEKIS--G----LM-SLKKLRILALGRNMIKTF--TGLEPLGDCLEELWISYNFIEKTKG--I----   81 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~----l~-~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~~~~l~~--~----   81 (152)
                      ++.++.|++++|.++...  .    +. ..++|+.|++++|.++..  ..+....++|+.|++++|.++....  +    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467899999999997542  2    22 336899999999998743  2343332389999999999875421  2    


Q ss_pred             -CCCCcccEEEcCCCccCCcccc---cccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCc
Q psy1563          82 -GSLKKLKVLYMCHNSVKEWGEL---NKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGE  148 (152)
Q Consensus        82 -~~~~~L~~l~l~~n~i~~~~~~---~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~  148 (152)
                       ...++|+.|++++|.+++....   ..+...+.|+.|++++|.+.+...  ......+...++|+.||..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~--~~L~~~L~~~~~L~~L~Ls  219 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL--ELLAAQLDRNRQLQELNVA  219 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH--HHHHHHGGGCSCCCEEECC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH--HHHHHHHhcCCCcCeEECC
Confidence             3468899999999999863311   123567889999999999875321  2223345667788888653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=1e-07  Score=63.32  Aligned_cols=111  Identities=14%  Similarity=0.043  Sum_probs=81.2

Q ss_pred             cCCCCCCCcEEEccCC-ccccc-----c-CCcCCccCcEEEcCCCcccccc------CccccccccceeeccccccCCc-
Q psy1563          13 KFKGPNPNTKLSLSTN-LIEKI-----S-GLMSLKKLRILALGRNMIKTFT------GLEPLGDCLEELWISYNFIEKT-   78 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n-~l~~~-----~-~l~~~~~L~~l~l~~n~~~~~~------~~~~~~~~L~~l~l~~n~~~~l-   78 (152)
                      .+...+.|++|++++| .+...     . .+...++|++|++++|.+..-.      .+.... .|+.|++++|.++.- 
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHH
Confidence            3567889999999999 88642     2 4566789999999999987421      223333 899999999998752 


Q ss_pred             -----cCCCCCCcccEEEc--CCCccCCccc---ccccCCCCCccEEEecCCCCcc
Q psy1563          79 -----KGIGSLKKLKVLYM--CHNSVKEWGE---LNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        79 -----~~~~~~~~L~~l~l--~~n~i~~~~~---~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                           ..+...++|+.|++  +.|.|++...   ...+...+.|+.+++++|.+..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence                 22566788999999  8899886331   1134456789999999998763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.39  E-value=8.5e-07  Score=68.17  Aligned_cols=38  Identities=8%  Similarity=-0.050  Sum_probs=20.7

Q ss_pred             CCCCCcEEEccCCcccccc------CCcCCccCcEEEcCCCccc
Q psy1563          16 GPNPNTKLSLSTNLIEKIS------GLMSLKKLRILALGRNMIK   53 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~------~l~~~~~L~~l~l~~n~~~   53 (152)
                      ++++|++|++++|.++...      .+..+++|+.|++++|.++
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~  205 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA  205 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence            4566777777666654221      1234455666666655554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.27  E-value=1.3e-06  Score=67.05  Aligned_cols=56  Identities=16%  Similarity=0.079  Sum_probs=35.6

Q ss_pred             CCCCCCcEEEccCCccccc-----c-CCcCCccCcEEEcCCCcccccc-Cccccccccceeecc
Q psy1563          15 KGPNPNTKLSLSTNLIEKI-----S-GLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWIS   71 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~-----~-~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~   71 (152)
                      .+++.|+.|++++|.++.+     + .+..+++|+.|++++|.+..++ .+..+. +|+.++++
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~-~L~~L~l~  251 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA-NLEEFCGG  251 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT-TCCEEEEC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh-HHHhhccc
Confidence            3577888888888887622     2 3446788888888888766554 222232 55555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.24  E-value=3.8e-07  Score=70.10  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             cCCccCcEEEcCCCccccc--cCccccccccceeeccccccCCcc--CC-CCCCcccEEEcCCCccCCcccccccCCCCC
Q psy1563          37 MSLKKLRILALGRNMIKTF--TGLEPLGDCLEELWISYNFIEKTK--GI-GSLKKLKVLYMCHNSVKEWGELNKINDCPV  111 (152)
Q Consensus        37 ~~~~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~~~~l~--~~-~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~  111 (152)
                      ..+++|+.|++++ .++..  +.+....++|+.|++++|.++...  .+ ..+++|+.|++++|.+++.........+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3455666666655 33321  122332237888888888765431  12 457888888888888864432223345778


Q ss_pred             ccEEEecCCCCccccchhHHHHHHHHhCCCcc
Q psy1563         112 LEDLVFCGNPIVENLEESAYRVEIKKRLPRLK  143 (152)
Q Consensus       112 L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~  143 (152)
                      |+.+++.+|+++..    . ...+...+|+++
T Consensus       508 L~~L~l~~~~~~~~----~-~~~l~~~lp~l~  534 (594)
T 2p1m_B          508 MRSLWMSSCSVSFG----A-CKLLGQKMPKLN  534 (594)
T ss_dssp             SSEEEEESSCCBHH----H-HHHHHHHCTTEE
T ss_pred             CCEEeeeCCCCCHH----H-HHHHHHhCCCCE
Confidence            88888888887321    1 222346677763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.22  E-value=1.1e-05  Score=59.82  Aligned_cols=35  Identities=20%  Similarity=0.114  Sum_probs=16.9

Q ss_pred             CCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcC
Q psy1563          14 FKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALG   48 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~   48 (152)
                      |.+|++|+.+++..|.++.++ ....+..|+.+.+.
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred             hhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence            445555555555555555443 11123444444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=7.2e-07  Score=62.62  Aligned_cols=93  Identities=19%  Similarity=0.199  Sum_probs=63.4

Q ss_pred             EEccCCcccccc-----CCcCCccCcEEEcCCCccccccCcc----ccccccceeeccccccCCccCCCCCC--cccEEE
Q psy1563          23 LSLSTNLIEKIS-----GLMSLKKLRILALGRNMIKTFTGLE----PLGDCLEELWISYNFIEKTKGIGSLK--KLKVLY   91 (152)
Q Consensus        23 L~l~~n~l~~~~-----~l~~~~~L~~l~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~~~~l~~~~~~~--~L~~l~   91 (152)
                      ++++.|..+.++     ....+++|+.|++++|.++.++.+.    .+ ++|+.|+|++|.++.+..+..+.  +|+.|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l-~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSERELDKIKGLKLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHS-TTCCEEECTTSCCCSGGGGGGGTTSCCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhC-CCCCEEECCCCccCCchhhhhcccCCcceEE
Confidence            455566444332     1135789999999999998776443    34 49999999999998775544444  899999


Q ss_pred             cCCCccCC-ccc-----ccccCCCCCccEEE
Q psy1563          92 MCHNSVKE-WGE-----LNKINDCPVLEDLV  116 (152)
Q Consensus        92 l~~n~i~~-~~~-----~~~~~~l~~L~~l~  116 (152)
                      +++|.+.. .+.     ...+..+++|+.|+
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99999874 221     01234577777654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.18  E-value=7.7e-07  Score=68.37  Aligned_cols=104  Identities=15%  Similarity=0.154  Sum_probs=56.3

Q ss_pred             CCCCCcEEEccCCcccccc--CCc-CCccCcEEEcCCC-cccc--ccCcc-ccccccceeeccccccCCc-----cC-CC
Q psy1563          16 GPNPNTKLSLSTNLIEKIS--GLM-SLKKLRILALGRN-MIKT--FTGLE-PLGDCLEELWISYNFIEKT-----KG-IG   82 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~--~l~-~~~~L~~l~l~~n-~~~~--~~~~~-~~~~~L~~l~l~~n~~~~l-----~~-~~   82 (152)
                      .++.|++|+++++.++...  .+. .+++|+.|++++| .++.  ++.+. .+ ++|+.|++++|.++..     +. ..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHC-TTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhC-CCCCEEeCcCCccCCcchHHHHHHhh
Confidence            4566777777776665331  232 4667777777766 4443  23333 23 3777777777765432     11 23


Q ss_pred             CCCcccEEEcCCCc--cCCcccccccCCCCCccEEEecCC
Q psy1563          83 SLKKLKVLYMCHNS--VKEWGELNKINDCPVLEDLVFCGN  120 (152)
Q Consensus        83 ~~~~L~~l~l~~n~--i~~~~~~~~~~~l~~L~~l~l~~n  120 (152)
                      .+++|+.|+++.|.  ++..........+++|+.+++.+|
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            55677777777665  221100001123567777777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.12  E-value=1.5e-06  Score=57.57  Aligned_cols=111  Identities=15%  Similarity=0.071  Sum_probs=79.2

Q ss_pred             CCcCCccCcEEEcCCC-ccccc-----c-CccccccccceeeccccccCCcc------CCCCCCcccEEEcCCCccCCcc
Q psy1563          35 GLMSLKKLRILALGRN-MIKTF-----T-GLEPLGDCLEELWISYNFIEKTK------GIGSLKKLKVLYMCHNSVKEWG  101 (152)
Q Consensus        35 ~l~~~~~L~~l~l~~n-~~~~~-----~-~~~~~~~~L~~l~l~~n~~~~l~------~~~~~~~L~~l~l~~n~i~~~~  101 (152)
                      .+...++|+.|++++| .+..-     . .+.... +|+.|++++|.+..-.      .+...++|++|++++|.|++..
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            4556789999999999 88742     1 333444 8999999999986431      1445678999999999998632


Q ss_pred             c---ccccCCCCCccEEEe--cCCCCccccchhHHHHHHHHhCCCcccccCc
Q psy1563         102 E---LNKINDCPVLEDLVF--CGNPIVENLEESAYRVEIKKRLPRLKKLDGE  148 (152)
Q Consensus       102 ~---~~~~~~l~~L~~l~l--~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~  148 (152)
                      .   ...+...+.|+.|++  .+|.+.....  ......+...+.|+.|+..
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~--~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVE--MEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHH--HHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHH--HHHHHHHHhCCCcCEEecc
Confidence            1   124556778999999  8899875432  3344556777888888653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.07  E-value=1.8e-06  Score=56.83  Aligned_cols=101  Identities=19%  Similarity=0.242  Sum_probs=66.4

Q ss_pred             ccCcEEEcCCCccccc--cCccccccccceeeccccc-cCCc--cCCCC----CCcccEEEcCCC-ccCCcccccccCCC
Q psy1563          40 KKLRILALGRNMIKTF--TGLEPLGDCLEELWISYNF-IEKT--KGIGS----LKKLKVLYMCHN-SVKEWGELNKINDC  109 (152)
Q Consensus        40 ~~L~~l~l~~n~~~~~--~~~~~~~~~L~~l~l~~n~-~~~l--~~~~~----~~~L~~l~l~~n-~i~~~~~~~~~~~l  109 (152)
                      ..|+.++++++.++..  ..+..+. +|+.|++++|. +++-  ..+..    +++|+.|++++| .|++.. +..+..+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence            3578888888877643  3555555 88888888874 5432  11333    357999999998 588754 3456778


Q ss_pred             CCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563         110 PVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK  144 (152)
Q Consensus       110 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  144 (152)
                      ++|+.|++++++-.....  .....+-..+|++++
T Consensus       139 ~~L~~L~L~~c~~Itd~g--l~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKE--KIVQAFKTSLPSLEL  171 (176)
T ss_dssp             TTCCEEEEESCTTCCCHH--HHHHHHHHHCTTCEE
T ss_pred             CCCCEEECCCCCCCCchH--HHHHHHHHHCCCcEE
Confidence            999999999986443321  223344567887753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.02  E-value=2.1e-06  Score=56.54  Aligned_cols=83  Identities=18%  Similarity=0.181  Sum_probs=64.0

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCc-cccc--cCcccc---ccccceeeccccc-cCCc--cCCCCCCc
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNM-IKTF--TGLEPL---GDCLEELWISYNF-IEKT--KGIGSLKK   86 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~-~~~~--~~~~~~---~~~L~~l~l~~n~-~~~l--~~~~~~~~   86 (152)
                      ..|+.|+++++.++...  .+..+++|+.|++++|. ++..  ..+...   .++|+.|++++|. +|+-  ..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            36899999999987553  67899999999999995 7643  234432   2379999999985 6643  33678899


Q ss_pred             ccEEEcCCC-ccCCc
Q psy1563          87 LKVLYMCHN-SVKEW  100 (152)
Q Consensus        87 L~~l~l~~n-~i~~~  100 (152)
                      |++|+++++ .|++.
T Consensus       141 L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          141 LKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CCEEEEESCTTCCCH
T ss_pred             CCEEECCCCCCCCch
Confidence            999999998 57764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.93  E-value=6.1e-06  Score=60.39  Aligned_cols=129  Identities=12%  Similarity=0.069  Sum_probs=68.5

Q ss_pred             CCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccc--cCcc--ccccccceeeccc--cc------cCCccC-C
Q psy1563          15 KGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTF--TGLE--PLGDCLEELWISY--NF------IEKTKG-I   81 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~--~~~~--~~~~~L~~l~l~~--n~------~~~l~~-~   81 (152)
                      ..+|.|+.|.++++.-..++.+ .+++|+.|++..+.++.-  ..+.  .+ |+|+.|+|+.  +.      +..+.. +
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~l-p~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDL-PNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBC-TTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             hcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccC-CCCcEEEEeccccccccchhHHHHHHHH
Confidence            4567777777766531122333 266777777776665421  1222  23 4777777742  11      111111 1


Q ss_pred             --CCCCcccEEEcCCCccCCcc--cccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          82 --GSLKKLKVLYMCHNSVKEWG--ELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        82 --~~~~~L~~l~l~~n~i~~~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                        ..+++|++|.+++|.+.+..  .......++.|+.|+++.|.+.+.-.  .....-+..+++|+.|+.
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~--~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA--RLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH--HHHHTTHHHHTTCSEEEC
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH--HHHHhhcccCCcceEEEC
Confidence              34678888888888776421  11112346778888888887764311  011111245677776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.82  E-value=0.00016  Score=53.57  Aligned_cols=85  Identities=15%  Similarity=0.105  Sum_probs=46.1

Q ss_pred             CCcCCccCcEEEcCCCccc-----ccc--CccccccccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccc
Q psy1563          35 GLMSLKKLRILALGRNMIK-----TFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNK  105 (152)
Q Consensus        35 ~l~~~~~L~~l~l~~n~~~-----~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~  105 (152)
                      .+..|++|+.+.+.++.+.     .++  .+..+. +|+.+.+.. .++.++.  +..+.+|+.+.+..+ ++.++. ..
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-~a  341 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF-SA  341 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT-TS
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH-Hh
Confidence            4555666666666555443     233  233343 666666663 3544432  556666777666443 555443 24


Q ss_pred             cCCCCCccEEEecCCCCcc
Q psy1563         106 INDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus       106 ~~~l~~L~~l~l~~n~~~~  124 (152)
                      |..+ .|+.+.+.+|....
T Consensus       342 F~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             SSSS-CCCEEEECCSSCCB
T ss_pred             CCCC-CCCEEEEcCCCCcc
Confidence            5556 67777777665443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.39  E-value=0.00023  Score=52.01  Aligned_cols=126  Identities=17%  Similarity=0.072  Sum_probs=77.1

Q ss_pred             CCCCCCCcEEEccCCccc----------ccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCcc--C
Q psy1563          14 FKGPNPNTKLSLSTNLIE----------KIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK--G   80 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~----------~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~--~   80 (152)
                      ..++++|+.|.+......          .+. .+..+|+|+.|.++++.-..++.+. . ++|+.|++..+.++.-.  .
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~-~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-R-PNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-C-TTCSEEEEECSBCCHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-C-CCCcEEEEecCCCChHHHHH
Confidence            456788999988654321          122 3456789999999887322334432 4 48999999888765321  1


Q ss_pred             C--CCCCcccEEEcCC--Cc------cCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHH---hCCCcccccC
Q psy1563          81 I--GSLKKLKVLYMCH--NS------VKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKK---RLPRLKKLDG  147 (152)
Q Consensus        81 ~--~~~~~L~~l~l~~--n~------i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~---~l~~L~~l~~  147 (152)
                      +  ..+++|+.|++..  +.      +..+........+++|+.|.+.+|.+.....      ..+.   .+++|+.||.
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~------~~la~a~~~~~L~~LdL  286 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV------EMFLESDILPQLETMDI  286 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH------HHHHHCSSGGGCSEEEC
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH------HHHHhCccCCCCCEEEC
Confidence            2  3688999998742  21      2222211111347899999999998874221      1232   4667887765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.33  E-value=0.0029  Score=46.34  Aligned_cols=103  Identities=15%  Similarity=0.244  Sum_probs=70.6

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      .|.++..|+.+.+..+. ..++  .+..++.|+.+.+. +.++.++  .+..+. +|+.+.+..+ ++.+..  +..+.+
T Consensus       260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCC
Confidence            46677778888776443 3443  56778888888885 3455565  344555 8888888754 555533  778888


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCC
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP  121 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~  121 (152)
                      |+.+.+-. .++.++. ..|..|.+|+.+.+.++.
T Consensus       336 L~~i~ip~-sv~~I~~-~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          336 LERIAIPS-SVTKIPE-SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CCEEEECT-TCCBCCG-GGGTTCTTCCEEEESSCH
T ss_pred             CCEEEECc-ccCEEhH-hHhhCCCCCCEEEECCce
Confidence            98888854 3776664 367788889998888764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.23  E-value=0.0017  Score=47.25  Aligned_cols=53  Identities=15%  Similarity=0.192  Sum_probs=25.0

Q ss_pred             ccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEec
Q psy1563          64 CLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFC  118 (152)
Q Consensus        64 ~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~  118 (152)
                      +|+.+.+..+.++.++.  +.++.+|+.+.+..+ ++.++. ..|..|.+|+.+.+.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-YAFKNCKALSTISYP  341 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCCCCCC
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEEC
Confidence            55555555554444432  445555555555332 444432 234445555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.17  E-value=0.0013  Score=40.96  Aligned_cols=53  Identities=15%  Similarity=0.174  Sum_probs=29.7

Q ss_pred             EEEcCCCccc--cccCccccccccceeeccccccCCccC--CCCCCcccEEEcCCCccC
Q psy1563          44 ILALGRNMIK--TFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVK   98 (152)
Q Consensus        44 ~l~l~~n~~~--~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~   98 (152)
                      .++-+++.++  .+|.-  +.++++.|+|++|.++.++.  +..+++|+.|++++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555556555  55521  22256666666666666643  455566666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.05  E-value=0.0071  Score=43.90  Aligned_cols=121  Identities=12%  Similarity=0.152  Sum_probs=78.8

Q ss_pred             CCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCccc
Q psy1563          15 KGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLK   88 (152)
Q Consensus        15 ~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~   88 (152)
                      ..+..++.+.+..+ +..++  .+..+..|+.+.+..+ ++.++  .+.... .|+.+.+..+ ++.++.  +..+.+|+
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccc
Confidence            34555666665433 34443  5667788888888765 55554  333444 7888887654 444533  67889999


Q ss_pred             EEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      .+.+.++.++.++. ..+..+.+|+.+.+..+ +......      .+..+.+|+.+..
T Consensus       290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~------aF~~C~~L~~i~i  340 (379)
T 4h09_A          290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY------AFKNCKALSTISY  340 (379)
T ss_dssp             EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT------TTTTCTTCCCCCC
T ss_pred             cccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH------HhhCCCCCCEEEE
Confidence            99998888888775 37788999999999754 4433222      2566777776643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.02  E-value=0.0017  Score=40.42  Aligned_cols=51  Identities=16%  Similarity=0.177  Sum_probs=25.3

Q ss_pred             EEEccCCccc--ccc-CCcCCccCcEEEcCCCcccccc-C-ccccccccceeecccccc
Q psy1563          22 KLSLSTNLIE--KIS-GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFI   75 (152)
Q Consensus        22 ~L~l~~n~l~--~~~-~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~   75 (152)
                      .++-+++.++  .+| .+  .++++.|++++|.++.++ . +..+. +|+.++|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALP-ALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCT-TCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhcc-ccCEEEecCCCe
Confidence            4445555554  444 22  224556666666665554 2 22333 556666665544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.70  E-value=0.0053  Score=44.98  Aligned_cols=101  Identities=14%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      .+.+++.|+.+.+. +.++.++  .+..+.+|+.+.+..+ ++.++  .+..+. +|+.+.+..+ ++.+..  +.++.+
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~-~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE-QLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC-CCCEEEECcc-cCEEhHhHhhCCCC
Confidence            46678999999986 5667775  7888999999999865 66665  455566 8999999754 666643  789999


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCC
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNP  121 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~  121 (152)
                      |+.+.+.++....    ..+..+..|+.+.+..+.
T Consensus       359 L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          359 LNNIEYSGSRSQW----NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CCEEEESSCHHHH----HTCBCCCCC---------
T ss_pred             CCEEEECCceeeh----hhhhccCCCCEEEeCCCC
Confidence            9999998774331    134456667777665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.59  E-value=0.012  Score=43.12  Aligned_cols=36  Identities=14%  Similarity=0.250  Sum_probs=15.6

Q ss_pred             CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEec
Q psy1563          81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFC  118 (152)
Q Consensus        81 ~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~  118 (152)
                      +.++.+|+.+.+..+ ++.++. ..+..|.+|+.+.+.
T Consensus       339 F~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          339 FRGCTSLSNINFPLS-LRKIGA-NAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECT-TTBTTCTTCCEEEEE
T ss_pred             ccCCCCCCEEEECcc-ccEehH-HHhhCCCCCCEEEEC
Confidence            344445554444333 333332 234444445554443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.46  E-value=0.02  Score=41.89  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             cCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV   89 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~   89 (152)
                      .+.++..++.+.+..+...-.. .+..+..++.+......+.. ..+.... +|+.+.+..+ ++.++.  +..+.+|+.
T Consensus       248 ~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~-~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCS-SLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCT-TCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             cccccccceeEEcCCCcceeeccccccccccceeccCceeecc-ccccccc-cccccccccc-cceechhhhcCCCCCCE
Confidence            4567888898888766443222 67778888888776654321 1333444 7888888654 555543  778899999


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      +.+.+ .++.++. ..+..|.+|+.+.+..+ +......      .+..+.+|+.++
T Consensus       325 i~lp~-~v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~------aF~~C~~L~~i~  372 (394)
T 4fs7_A          325 IDLPY-LVEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN------AFQGCINLKKVE  372 (394)
T ss_dssp             ECCCT-TCCEECT-TTTTTCTTCCEECCCTT-CCEECTT------TBTTCTTCCEEE
T ss_pred             EEeCC-cccEEhH-HhccCCCCCCEEEECcc-ccEehHH------HhhCCCCCCEEE
Confidence            98864 4777664 36788999999999776 5433322      256777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.35  E-value=0.0045  Score=41.33  Aligned_cols=107  Identities=13%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             CCCCCCcEEEccCC-ccccc------cCCcCCccCcEEEcCCCcccccc--Cc----cccccccceeeccccccCCcc--
Q psy1563          15 KGPNPNTKLSLSTN-LIEKI------SGLMSLKKLRILALGRNMIKTFT--GL----EPLGDCLEELWISYNFIEKTK--   79 (152)
Q Consensus        15 ~~l~~l~~L~l~~n-~l~~~------~~l~~~~~L~~l~l~~n~~~~~~--~~----~~~~~~L~~l~l~~n~~~~l~--   79 (152)
                      .+-+.|++|+++++ .|...      ..+..-++|+.|++++|.+....  .+    .... .|+.|+|+.|.|..-.  
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHHHH
Confidence            34567888888875 66532      14555677888888888887432  22    2333 7888888888876331  


Q ss_pred             ----CCCCCCcccEEEcCCC---ccCCccc---ccccCCCCCccEEEecCCCC
Q psy1563          80 ----GIGSLKKLKVLYMCHN---SVKEWGE---LNKINDCPVLEDLVFCGNPI  122 (152)
Q Consensus        80 ----~~~~~~~L~~l~l~~n---~i~~~~~---~~~~~~l~~L~~l~l~~n~~  122 (152)
                          .+..-+.|+.|++++|   .+.+...   ...+..-+.|..+++..|..
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                1455567888888755   3332110   11233445677888876654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.33  E-value=0.0037  Score=41.78  Aligned_cols=109  Identities=9%  Similarity=-0.012  Sum_probs=72.0

Q ss_pred             cCCccCcEEEcCCC-ccccc------cCccccccccceeeccccccCCcc--C----CCCCCcccEEEcCCCccCCcccc
Q psy1563          37 MSLKKLRILALGRN-MIKTF------TGLEPLGDCLEELWISYNFIEKTK--G----IGSLKKLKVLYMCHNSVKEWGEL  103 (152)
Q Consensus        37 ~~~~~L~~l~l~~n-~~~~~------~~~~~~~~~L~~l~l~~n~~~~l~--~----~~~~~~L~~l~l~~n~i~~~~~~  103 (152)
                      ..-++|+.|+++++ .+..-      ..+.... .|+.|+|++|.+....  .    +..-+.|+.|+++.|.|++..-.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            45678999999986 77632      2344455 8999999999986442  1    34557999999999999863321


Q ss_pred             ---cccCCCCCccEEEecCCCC---ccccchhHHHHHHHHhCCCcccccCc
Q psy1563         104 ---NKINDCPVLEDLVFCGNPI---VENLEESAYRVEIKKRLPRLKKLDGE  148 (152)
Q Consensus       104 ---~~~~~l~~L~~l~l~~n~~---~~~~~~~~~~~~~~~~l~~L~~l~~~  148 (152)
                         ..+..-+.|+.|++++|..   ....  .....+++..-+.|+.|+..
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g--~~~ia~aL~~N~tL~~L~l~  165 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQV--EMDMMMAIEENESLLRVGIS  165 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHH--HHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHH--HHHHHHHHHhCCCcCeEecc
Confidence               1344556799999986533   2211  12344556666777776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-14
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-12
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 2e-14
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 23  LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI- 81
            +L    +     L++     +L    +M  T   +E     L  L +S N + +   + 
Sbjct: 25  QALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMS 84

Query: 82  ---GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE-SAYRVEIKK 137
                   LK+L +  N +K   EL+K      LE+L   GN + +   + S Y   I++
Sbjct: 85  SIVQKAPNLKILNLSGNELKSERELDK-IKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143

Query: 138 RLPRLKKLDGEVLP 151
           R P+L +LDG  LP
Sbjct: 144 RFPKLLRLDGHELP 157

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.6 bits (136), Expect = 9e-12
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 23  LSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIG 82
           L L+   +  +  L  L  +  L L  N ++          CLE L  S N +E   G+ 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 83  SLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRL 142
           +L +L+ L +C+N +++   +  +  CP L  L   GN +    +E   +  + + LP +
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC---QEEGIQERLAEMLPSV 119

Query: 143 KKL 145
             +
Sbjct: 120 SSI 122

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 7e-10
 Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 21/145 (14%)

Query: 25  LSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSL 84
           L+  LIE+ +   +  + R L L    I     L    D  + +  S N I K  G   L
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

Query: 85  KKLKVLYMCHN---------------------SVKEWGELNKINDCPVLEDLVFCGNPIV 123
           ++LK L + +N                     +     EL  ++    L+ L +      
Sbjct: 63  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122

Query: 124 ENLEESAYRVEIKKRLPRLKKLDGE 148
               +  YR+ +  ++P+++ LD +
Sbjct: 123 PVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
           T L+L  N I  IS + SL KL+ L    N +   + +  L +   +  L   +N I   
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKV---SDVSSLANLTNINWLSAGHNQISDL 366

Query: 79  KGIGSLKKLKVLYMCHN 95
             + +L ++  L +   
Sbjct: 367 TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 20  NTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTK 79
             K  L    +        L ++  L   R  IK+  G+E L + L ++  S N +    
Sbjct: 24  KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLTDIT 82

Query: 80  GIGSLKKLKVLYMCHNSVKEW 100
            + +L KL  + M +N + + 
Sbjct: 83  PLKNLTKLVDILMNNNQIADI 103

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 32/146 (21%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLG------------------- 62
            L L+ N I  ++ L  L KL  L LG N I   + L  L                    
Sbjct: 245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 63  --DCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGN 120
               L  L + +N I     + SL KL+ L+  +N V    +++ + +   +  L    N
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS---DVSSLANLTNINWLSAGHN 361

Query: 121 PIVENLEESAYRVEIKKRLPRLKKLD 146
            I +    +         L R+ +L 
Sbjct: 362 QISDLTPLA--------NLTRITQLG 379

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 38  SLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSV 97
           +L +     LG+  +        L   +  L      I+   G+  L  L  +   +N +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL 78

Query: 98  KEWGELNKINDCPVLEDLVFC 118
               ++  + +   L D++  
Sbjct: 79  T---DITPLKNLTKLVDILMN 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKT 78
            +LSL+ N ++ I  L SL  L  L L  N I   + L PL     L EL +  N I   
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQI---SNLAPLSGLTKLTELKLGANQISNI 278

Query: 79  KGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR 138
             +  L  L  L +  N +++    + I++   L  L    N I +    S         
Sbjct: 279 SPLAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISPVS--------S 327

Query: 139 LPRLKKLD 146
           L +L++L 
Sbjct: 328 LTKLQRLF 335

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 48.1 bits (113), Expect = 4e-08
 Identities = 69/132 (52%), Positives = 86/132 (65%), Gaps = 4/132 (3%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG 80
             L+LSTN IEKIS L  ++ LRIL+LGRN+IK    L+ + D LEELWISYN I    G
Sbjct: 51  KHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110

Query: 81  IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIV----ENLEESAYRVEIK 136
           I  L  L+VLYM +N +  WGE++K+     LEDL+  GNP+     EN   S YR+E+ 
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

Query: 137 KRLPRLKKLDGE 148
           KRLP LKKLDG 
Sbjct: 171 KRLPNLKKLDGM 182

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 8e-05
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           K +L    +        L  +  +    + IK+  G++ L + + +L+++ N +   K +
Sbjct: 28  KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLNGNKLTDIKPL 86

Query: 82  GSLKKLKVLYMCHNSVKEW 100
            +LK L  L++  N VK+ 
Sbjct: 87  ANLKNLGWLFLDENKVKDL 105

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 2e-04
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 21  TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEK-TK 79
            +L++S N + ++       +L  L    N +     +  L   L++L + YN + +   
Sbjct: 287 EELNVSNNKLIELPA--LPPRLERLIASFNHLAE---VPELPQNLKQLHVEYNPLREFPD 341

Query: 80  GIGSLKKLKV 89
              S++ L++
Sbjct: 342 IPESVEDLRM 351

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 39  LKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVK 98
           L +     LG+  +        L D +  L      I+   G+  L  L  +   +N + 
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 75

Query: 99  EWGELNKINDC 109
           +   L  +   
Sbjct: 76  DITPLKNLTKL 86

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 22  KLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI 81
           K  L    +        L ++  L   R  IK+  G+E L + L ++  S N +     +
Sbjct: 22  KTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLTDITPL 80

Query: 82  GSLKKLKVLYMCHNSVKEW 100
            +L KL  + M +N + + 
Sbjct: 81  KNLTKLVDILMNNNQIADI 99

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 36  LMSLKKLRILALGRNMIKTFTGLEPLGDC--LEELWISYNFIEKTKGIGSLKKLKVLYMC 93
           L +L KL  L    N I   + + PL     L E+ +  N I     + +   L ++ + 
Sbjct: 169 LANLSKLTTLKADDNKI---SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

Query: 94  H 94
           +
Sbjct: 226 N 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.89
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.82
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.49
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.4
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.17
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.06
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.02
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.7
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.47
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.18
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.47
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.37

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.9e-23  Score=133.80  Aligned_cols=144  Identities=22%  Similarity=0.310  Sum_probs=127.2

Q ss_pred             hhhhhhhhccCCCCCCCcEEEccCCccccccC-CcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--
Q psy1563           4 EEREKENLYKFKGPNPNTKLSLSTNLIEKISG-LMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--   80 (152)
Q Consensus         4 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~~~~-l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--   80 (152)
                      ..+.++....+.++..+++|++++|+|+.++. +..+++|+.+++++|.++.++.+..+. +|+.+++++|.++.++.  
T Consensus         4 t~~~i~~~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~-~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_           4 TAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             CHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCS-SCCEEECCSSCCCEECSCH
T ss_pred             CHHHHhhhHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCc-chhhhhcccccccCCCccc
Confidence            34566677778899999999999999999974 467899999999999999998887776 99999999999998865  


Q ss_pred             CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCcccC
Q psy1563          81 IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVLP  151 (152)
Q Consensus        81 ~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~  151 (152)
                      +..+++|+.|++++|.|+++++...+..+++|+.+++.+|+++..+   .++..++..+|+|+.||+.+|+
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~---~~r~~~i~~lp~L~~LD~~~i~  150 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQKVK  150 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTEECC
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCCCcccccc---chHHHHHHHCCCcCeeCCCCCC
Confidence            4578999999999999999987777888999999999999998765   6788889999999999999886

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.7e-20  Score=115.60  Aligned_cols=121  Identities=25%  Similarity=0.438  Sum_probs=106.9

Q ss_pred             cEEEccCCccccccCCcCCccCcEEEcCCCcccccc-CccccccccceeeccccccCCccCCCCCCcccEEEcCCCccCC
Q psy1563          21 TKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT-GLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKE   99 (152)
Q Consensus        21 ~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~-~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~   99 (152)
                      +.|++++|+++.++.+..+++|+++++++|.++.+| .+..+. +|+.+++++|.++.++++..+++|+.+++++|.|++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~-~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR-CLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCT-TCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhh-cccccccccccccccCccccccccCeEECCCCccCC
Confidence            578999999999888889999999999999999997 566776 999999999999999889999999999999999999


Q ss_pred             cccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563         100 WGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL  145 (152)
Q Consensus       100 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l  145 (152)
                      ++....+..+++|+.+++++|+++..+   .++..+...+|+++.+
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~~~~---~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLCQEE---GIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGGGSS---SCTTHHHHHCTTCSEE
T ss_pred             CCCchhhcCCCCCCEEECCCCcCCcCc---cHHHHHHHHCcCcceE
Confidence            887667788999999999999998754   4455577888988765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.82  E-value=8.7e-23  Score=136.63  Aligned_cols=140  Identities=49%  Similarity=0.807  Sum_probs=122.1

Q ss_pred             cCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYM   92 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l   92 (152)
                      ++..+++|+.|++++|.|+.++.+..+++|+.|++++|.++.++.+....+.|+.+++++|.++.++++..+++|+.|++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L  122 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEE
T ss_pred             HHhcccccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46678899999999999999888888999999999999999888766555589999999999998877788899999999


Q ss_pred             CCCccCCcccccccCCCCCccEEEecCCCCccccch----hHHHHHHHHhCCCcccccCcccCC
Q psy1563          93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE----SAYRVEIKKRLPRLKKLDGEVLPE  152 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~----~~~~~~~~~~l~~L~~l~~~~~~~  152 (152)
                      ++|.|++++....+..+++|+.+++.+|++....+.    ..|+..++..+|+|+.||+.+|+.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~  186 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDV  186 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTT
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCH
Confidence            999999987666788999999999999998754432    357888899999999999999863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2e-16  Score=105.26  Aligned_cols=113  Identities=23%  Similarity=0.292  Sum_probs=67.5

Q ss_pred             hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcc
Q psy1563           8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKL   87 (152)
Q Consensus         8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L   87 (152)
                      ++.+..+..+++|+.|++++|+++.++.+..+++|+.+++++|.+..++.+..+. .|+.++++++....++.+..+++|
T Consensus        52 i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~L  130 (199)
T d2omxa2          52 IKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQITDIDPLKNLTNL  130 (199)
T ss_dssp             CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCT-TCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             CCCccccccCCCcCcCccccccccCcccccCCccccccccccccccccccccccc-ccccccccccccccccccchhhhh
Confidence            4445556667788888888887777666777777788888777776665554444 555555555555444444455555


Q ss_pred             cEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          88 KVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        88 ~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      +.+++++|.+..++   .+..+++++.+++.+|.+++
T Consensus       131 ~~L~l~~n~l~~~~---~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         131 NRLELSSNTISDIS---ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             SEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCC
T ss_pred             HHhhhhhhhhcccc---cccccccccccccccccccC
Confidence            55555555554433   23344445555555554444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.5e-16  Score=104.05  Aligned_cols=127  Identities=24%  Similarity=0.286  Sum_probs=110.3

Q ss_pred             hhhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCc
Q psy1563           7 EKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKK   86 (152)
Q Consensus         7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~   86 (152)
                      .++++..+.++++|+.|++++|.+..++.+..+++|+.++++++....++.+..+. +|+.+++++|.+..++.+..+++
T Consensus        73 ~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~l~~~~~  151 (199)
T d2omxa2          73 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT-NLNRLELSSNTISDISALSGLTS  151 (199)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCT-TCSEEECCSSCCCCCGGGTTCTT
T ss_pred             cccCcccccCCcccccccccccccccccccccccccccccccccccccccccchhh-hhHHhhhhhhhhccccccccccc
Confidence            45566668899999999999999988888889999999999999988877777776 99999999999988887889999


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL  145 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l  145 (152)
                      ++.+++.+|.+++++   .+..+++|+.|++++|++++.+.        +..+++|+.|
T Consensus       152 L~~L~l~~n~l~~l~---~l~~l~~L~~L~ls~N~i~~i~~--------l~~L~~L~~L  199 (199)
T d2omxa2         152 LQQLNFSSNQVTDLK---PLANLTTLERLDISSNKVSDISV--------LAKLTNLESL  199 (199)
T ss_dssp             CSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG--------GGGCTTCSEE
T ss_pred             ccccccccccccCCc---cccCCCCCCEEECCCCCCCCCcc--------ccCCCCCCcC
Confidence            999999999999876   46789999999999999987543        5778888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.9e-16  Score=105.28  Aligned_cols=128  Identities=26%  Similarity=0.291  Sum_probs=81.7

Q ss_pred             hhhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCC-----
Q psy1563           7 EKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI-----   81 (152)
Q Consensus         7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~-----   81 (152)
                      .++++..+..+++|++|++++|.++.++.+..+++|+.+++++|.++.++.+..+. +|+.+++++|.+..++.+     
T Consensus        57 ~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~~~~~~~~~l~~l~~  135 (210)
T d1h6ta2          57 DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLK-KLKSLSLEHNGISDINGLVHLPQ  135 (210)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCT-TCCEEECTTSCCCCCGGGGGCTT
T ss_pred             CCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            34445556677788888888888877766667778888888888777766655554 666666666655544333     


Q ss_pred             -----------------CCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563          82 -----------------GSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK  144 (152)
Q Consensus        82 -----------------~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  144 (152)
                                       ..+++|+.+++++|.+++++   .+..+++|+.+++++|.++..+.        +..+++|+.
T Consensus       136 l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~---~l~~l~~L~~L~Ls~N~i~~l~~--------l~~l~~L~~  204 (210)
T d1h6ta2         136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRA--------LAGLKNLDV  204 (210)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCGG--------GTTCTTCSE
T ss_pred             ccccccccccccccccccccccccccccccccccccc---cccCCCCCCEEECCCCCCCCChh--------hcCCCCCCE
Confidence                             34556666666666665543   24556666777777776655432        455666666


Q ss_pred             cc
Q psy1563         145 LD  146 (152)
Q Consensus       145 l~  146 (152)
                      |+
T Consensus       205 L~  206 (210)
T d1h6ta2         205 LE  206 (210)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=3.8e-16  Score=104.72  Aligned_cols=122  Identities=23%  Similarity=0.295  Sum_probs=94.5

Q ss_pred             CCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCC
Q psy1563          16 GPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHN   95 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n   95 (152)
                      .+..++.|+++++.++.++.+..+++|+.|++++|.++.++.+..+. +|+.+++++|.++.++.+..+++|+.+++.+|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLK-NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCGGGGTTCTTCCEEECTTS
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCc-cccccccccccccccccccccccccccccccc
Confidence            46689999999999998888889999999999999999988777776 99999999999999988888999999999999


Q ss_pred             ccCCcccc-------------------cccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          96 SVKEWGEL-------------------NKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        96 ~i~~~~~~-------------------~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      .+.+++..                   ..+..+++|+.+++.+|.+.+.++        +..+++|+.|+
T Consensus       123 ~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~--------l~~l~~L~~L~  184 (210)
T d1h6ta2         123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--------LAGLTKLQNLY  184 (210)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--------GTTCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc--------ccCCCCCCEEE
Confidence            87765422                   112234456666666666654432        44566666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=8.6e-16  Score=94.94  Aligned_cols=111  Identities=21%  Similarity=0.282  Sum_probs=91.4

Q ss_pred             hhhhhhhhccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC--
Q psy1563           4 EEREKENLYKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG--   80 (152)
Q Consensus         4 ~~~~~~~~~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~--   80 (152)
                      .+..++.+..+..++.|++|++++|.++.+| .+..+++|+++++++|.++.++.+..+. +|+.+++++|.++.++.  
T Consensus         6 s~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~-~L~~L~l~~N~i~~~~~~~   84 (124)
T d1dcea3           6 AHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP-RLQELLLCNNRLQQSAAIQ   84 (124)
T ss_dssp             TTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCCSSSTTG
T ss_pred             CCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCcccccc-ccCeEECCCCccCCCCCch
Confidence            3556777778889999999999999999997 7889999999999999999999888886 99999999999988764  


Q ss_pred             -CCCCCcccEEEcCCCccCCccccc--ccCCCCCccEE
Q psy1563          81 -IGSLKKLKVLYMCHNSVKEWGELN--KINDCPVLEDL  115 (152)
Q Consensus        81 -~~~~~~L~~l~l~~n~i~~~~~~~--~~~~l~~L~~l  115 (152)
                       +..+++|+.+++++|.+++.+...  ....+|++..+
T Consensus        85 ~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          85 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             hhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence             567899999999999998654321  12235655543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=4.2e-14  Score=93.32  Aligned_cols=109  Identities=24%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             CCCcEEEccCCcccc-cc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCcccEE
Q psy1563          18 NPNTKLSLSTNLIEK-IS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVL   90 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~-~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l   90 (152)
                      +.+++|++++|.|+. ++  .+..+++|+.|++++|.+..++  .+..+. +|+.+++++|+++.++.  +.++++|+.|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~-~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc-ccceeeeccccccccCHHHHhCCCccccc
Confidence            589999999999975 43  6778999999999999998775  445565 99999999999998864  7899999999


Q ss_pred             EcCCCccCCcccccccCCCCCccEEEecCCCCccccch
Q psy1563          91 YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEE  128 (152)
Q Consensus        91 ~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  128 (152)
                      ++++|.|+.++. ..+..+++|+++++.+|++......
T Consensus       108 ~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_         108 NLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             ECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             ccCCccccccCH-HHhcCCcccccccccccccccccch
Confidence            999999999874 4778899999999999999876543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-14  Score=98.70  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=18.1

Q ss_pred             CCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIK   53 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~   53 (152)
                      |.++++|++|++++|+++.++.+..+++|++|++++|+++
T Consensus        51 f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS
T ss_pred             hhcccccccccccccccccccccccccccccccccccccc
Confidence            3444444444444444444443334444444444444444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=9.1e-15  Score=105.05  Aligned_cols=128  Identities=25%  Similarity=0.303  Sum_probs=94.8

Q ss_pred             hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccc----------------------cCcccccccc
Q psy1563           8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTF----------------------TGLEPLGDCL   65 (152)
Q Consensus         8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~----------------------~~~~~~~~~L   65 (152)
                      ++++..+..+++++.+++.+|.++.++.+..+++|+.++++++.++.+                      +.+..+. ++
T Consensus       231 l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~-~l  309 (384)
T d2omza2         231 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK-NL  309 (384)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCT-TC
T ss_pred             CCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhc-cc
Confidence            334455566677777777777776666566667777777776665533                      2233333 78


Q ss_pred             ceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563          66 EELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL  145 (152)
Q Consensus        66 ~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l  145 (152)
                      +.+++++|.+++++.+..+++|+.|++++|++++++   .+..+++|+.+++++|++++.++        +..+++|+.|
T Consensus       310 ~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~---~l~~l~~L~~L~l~~N~l~~l~~--------l~~l~~L~~L  378 (384)
T d2omza2         310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS---SLANLTNINWLSAGHNQISDLTP--------LANLTRITQL  378 (384)
T ss_dssp             SEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCBCGG--------GTTCTTCSEE
T ss_pred             CeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh---hHcCCCCCCEEECCCCcCCCChh--------hccCCCCCEe
Confidence            889999998888876788899999999999998865   45778999999999999987765        6778888887


Q ss_pred             cC
Q psy1563         146 DG  147 (152)
Q Consensus       146 ~~  147 (152)
                      +-
T Consensus       379 ~L  380 (384)
T d2omza2         379 GL  380 (384)
T ss_dssp             EC
T ss_pred             eC
Confidence            64

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.9e-14  Score=97.88  Aligned_cols=116  Identities=22%  Similarity=0.230  Sum_probs=71.0

Q ss_pred             hhhhhccCCCCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCCcccccc--Cccccc---------------------
Q psy1563           7 EKENLYKFKGPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKTFT--GLEPLG---------------------   62 (152)
Q Consensus         7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~~~--~~~~~~---------------------   62 (152)
                      .++.+..+..+++|+.|++++|+++..+ .+..+++|+.++++++.+..++  .+..+.                     
T Consensus        66 ~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~  145 (266)
T d1p9ag_          66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT  145 (266)
T ss_dssp             CCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecccccc
Confidence            4556666777888888888888887665 6667777888888777665443  111221                     


Q ss_pred             --cccceeeccccccCCccC--CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCcc
Q psy1563          63 --DCLEELWISYNFIEKTKG--IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        63 --~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                        +.++.+++++|+++.++.  +..+++|++|++++|.|+.+|.  .+..+++|+.+++.+||+.-
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~--~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--GFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCCCSEEECCSCCBCC
T ss_pred             ccccchhcccccccccccCccccccccccceeecccCCCcccCh--hHCCCCCCCEEEecCCCCCC
Confidence              255555666665555532  4455666666666666665543  23345556666666666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=7e-14  Score=94.37  Aligned_cols=128  Identities=22%  Similarity=0.236  Sum_probs=97.5

Q ss_pred             hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc----------------------Ccccccccc
Q psy1563           8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT----------------------GLEPLGDCL   65 (152)
Q Consensus         8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~----------------------~~~~~~~~L   65 (152)
                      +..+..+..+++++.+++++|.++.++.+..+++|+.+.++++....++                      .+... ++|
T Consensus        75 i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~L  153 (227)
T d1h6ua2          75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL-TNL  153 (227)
T ss_dssp             CCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC-TTC
T ss_pred             eeccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccc-ccc
Confidence            4455567778888888888888877777777788888888777654321                      22233 378


Q ss_pred             ceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563          66 EELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL  145 (152)
Q Consensus        66 ~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l  145 (152)
                      +.+++++|.++..+.+..+++|+.|++++|++++++   .+..+++|+.|++++|++++.++        +..+++|+.|
T Consensus       154 ~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~---~l~~l~~L~~L~Ls~N~lt~i~~--------l~~l~~L~~L  222 (227)
T d1h6ua2         154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQISDVSP--------LANTSNLFIV  222 (227)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECTTSCCCBCGG--------GTTCTTCCEE
T ss_pred             ccccccccccccchhhcccccceecccCCCccCCCh---hhcCCCCCCEEECcCCcCCCCcc--------cccCCCCCEE
Confidence            999999998887776888899999999999998865   35678889999999999887654        6788888887


Q ss_pred             cC
Q psy1563         146 DG  147 (152)
Q Consensus       146 ~~  147 (152)
                      +.
T Consensus       223 ~l  224 (227)
T d1h6ua2         223 TL  224 (227)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-14  Score=92.82  Aligned_cols=112  Identities=26%  Similarity=0.222  Sum_probs=89.4

Q ss_pred             cccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCccCCcccccccCCC
Q psy1563          30 IEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSVKEWGELNKINDC  109 (152)
Q Consensus        30 l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i~~~~~~~~~~~l  109 (152)
                      +...+.+.+..+++.|++++|.++.++.+....++|+.+++++|.++.++++..+++|++|++++|.++.++.. .+..+
T Consensus         8 i~~~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~-~~~~l   86 (162)
T d1a9na_           8 IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEG-LDQAL   86 (162)
T ss_dssp             HHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSC-HHHHC
T ss_pred             HhhhHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcc-ccccc
Confidence            33445556777899999999999999866443349999999999999998899999999999999999988642 34568


Q ss_pred             CCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563         110 PVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus       110 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      ++|+++++++|.+.......     .+..+++|+.++.
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~-----~l~~l~~L~~L~l  119 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLD-----PLASLKSLTYLCI  119 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGG-----GGGGCTTCCEEEC
T ss_pred             cccccceecccccccccccc-----ccccccccchhhc
Confidence            99999999999998654311     1567888887743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=1.3e-13  Score=90.83  Aligned_cols=118  Identities=18%  Similarity=0.144  Sum_probs=97.7

Q ss_pred             CcEEEccCCcccccc-CCcCCccCcEEEcCCCcccc-cc--CccccccccceeeccccccCCccC--CCCCCcccEEEcC
Q psy1563          20 NTKLSLSTNLIEKIS-GLMSLKKLRILALGRNMIKT-FT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKVLYMC   93 (152)
Q Consensus        20 l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n~~~~-~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~l~l~   93 (152)
                      .+.++.++++++.+| .+  .+++++|++++|.++. ++  .+..+. +|+.|++++|.+..++.  +..+++|+.|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~-~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCc-eEeeeeccccccccccccccccccccceeeec
Confidence            467889999999998 55  3689999999999975 43  445566 99999999999988754  7788999999999


Q ss_pred             CCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563          94 HNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        94 ~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      +|+++.++. ..|.++++|+.|++.+|.++..+++.      +..+++|+.++.
T Consensus        87 ~N~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i~~~~------f~~l~~L~~l~L  133 (192)
T d1w8aa_          87 ENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGS------FEHLNSLTSLNL  133 (192)
T ss_dssp             SCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTS------STTCTTCCEEEC
T ss_pred             cccccccCH-HHHhCCCcccccccCCccccccCHHH------hcCCcccccccc
Confidence            999999874 46888999999999999999877653      567788887753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.6e-13  Score=93.59  Aligned_cols=126  Identities=22%  Similarity=0.256  Sum_probs=94.1

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc-C-ccccccccceeeccccccCCccC--CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT-G-LEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~-~-~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      .+.++++|+.|++++|.+..++  .+...++|+.+++++|.++.++ . +.... +|+.+++++|.++.++.  +..+++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~-~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcccc-chhhcccccCcccccchhhhccccc
Confidence            4667888888888888887654  5566778888888888888775 3 33444 78888888888877744  667788


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      |+.+++++|.++.+.. ..+..+++++.+++++|.+.+.++.      .+..+++|+.|+
T Consensus       179 L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~~------~~~~~~~L~~L~  231 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQYLR  231 (284)
T ss_dssp             CCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHH------HHTTCTTCCEEE
T ss_pred             cchhhhhhccccccCh-hHhhhhhhccccccccccccccccc------ccccccccCEEE
Confidence            8888888888887653 3677788888888888888776643      266777777764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=3.2e-13  Score=96.86  Aligned_cols=128  Identities=25%  Similarity=0.300  Sum_probs=99.0

Q ss_pred             hhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC-------
Q psy1563           8 KENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG-------   80 (152)
Q Consensus         8 ~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~-------   80 (152)
                      ++++.....++.++.+++++|.++.++.+..+++++.+++++|.++.++.+..+. +|+.++++.+.++.++.       
T Consensus       209 i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~l  287 (384)
T d2omza2         209 ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT-KLTELKLGANQISNISPLAGLTAL  287 (384)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT-TCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             cCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccc-cCCEeeccCcccCCCCcccccccc
Confidence            3444556678899999999999998888888999999999999999887777776 88888888887765432       


Q ss_pred             ---------------CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccc
Q psy1563          81 ---------------IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKL  145 (152)
Q Consensus        81 ---------------~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l  145 (152)
                                     +..+++++.+++++|.+++++   .+..+++|+.+++++|.+++.+.        +..+++|+.|
T Consensus       288 ~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~l~~l~~--------l~~l~~L~~L  356 (384)
T d2omza2         288 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVSS--------LANLTNINWL  356 (384)
T ss_dssp             SEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCCGG--------GGGCTTCCEE
T ss_pred             ccccccccccccccccchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCCCCCChh--------HcCCCCCCEE
Confidence                           234456777777777777654   35668889999999998876432        5778888888


Q ss_pred             cC
Q psy1563         146 DG  147 (152)
Q Consensus       146 ~~  147 (152)
                      +.
T Consensus       357 ~l  358 (384)
T d2omza2         357 SA  358 (384)
T ss_dssp             EC
T ss_pred             EC
Confidence            64

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.4e-12  Score=87.84  Aligned_cols=129  Identities=20%  Similarity=0.215  Sum_probs=102.4

Q ss_pred             hhhhhccCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccC------
Q psy1563           7 EKENLYKFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKG------   80 (152)
Q Consensus         7 ~~~~~~~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~------   80 (152)
                      .++.+..+.++++|+.|++++|.+..+..+..+++++.+++++|.++.++.+..+. .|+.+.++.+....++.      
T Consensus        52 ~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~-~L~~l~l~~~~~~~~~~~~~~~~  130 (227)
T d1h6ua2          52 GVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQ-SIKTLDLTSTQITDVTPLAGLSN  130 (227)
T ss_dssp             CCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCT-TCCEEECTTSCCCCCGGGTTCTT
T ss_pred             CCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccc-cccccccccccccccchhccccc
Confidence            45566678889999999999999998877889999999999999998887777776 88888887776543321      


Q ss_pred             ----------------CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563          81 ----------------IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK  144 (152)
Q Consensus        81 ----------------~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  144 (152)
                                      +..+++|+.+.+++|.+++..   .+..+++|+.+++++|.+.+.++        ++.+++|+.
T Consensus       131 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~l~~l~~--------l~~l~~L~~  199 (227)
T d1h6ua2         131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNKISDISP--------LASLPNLIE  199 (227)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG--------GGGCTTCCE
T ss_pred             hhhhhchhhhhchhhhhccccccccccccccccccch---hhcccccceecccCCCccCCChh--------hcCCCCCCE
Confidence                            245567888888888887654   35678899999999999887543        678888888


Q ss_pred             ccC
Q psy1563         145 LDG  147 (152)
Q Consensus       145 l~~  147 (152)
                      |+.
T Consensus       200 L~L  202 (227)
T d1h6ua2         200 VHL  202 (227)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            854

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.5e-12  Score=86.52  Aligned_cols=113  Identities=22%  Similarity=0.296  Sum_probs=97.2

Q ss_pred             cCCCCCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKK   86 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~   86 (152)
                      .+..+++|+.+++.+|+++.++  .+..+++|+.+++++|.++.++  .+..+. +|+.+++++|.++.+..  +..+++
T Consensus       124 ~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~-~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc-ccchhhhhhccccccChhHhhhhhh
Confidence            4566889999999999999886  5778899999999999999886  455565 99999999999988743  788999


Q ss_pred             ccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          87 LKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        87 L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      ++++++++|.+.+.+. ..+..+++|+.+++++|++....+
T Consensus       203 L~~L~l~~N~i~~~~~-~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         203 LMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccccccccccccc-cccccccccCEEEecCCCCCCCcc
Confidence            9999999999998874 467889999999999999987654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.4e-11  Score=78.51  Aligned_cols=107  Identities=19%  Similarity=0.206  Sum_probs=82.1

Q ss_pred             CCCCCcEEEccCCcccccc-CCcCCccCcEEEcCCC-cccccc--CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563          16 GPNPNTKLSLSTNLIEKIS-GLMSLKKLRILALGRN-MIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV   89 (152)
Q Consensus        16 ~l~~l~~L~l~~n~l~~~~-~l~~~~~L~~l~l~~n-~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~   89 (152)
                      .+.....+..+++.+...+ .+..+++++.|+++++ .++.++  .+..+. +|+.|++++|.++.++.  +..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhcccc-ccCcceeeccccCCcccccccccccccc
Confidence            3445566788888887766 7778888999999766 488775  456676 89999999999988854  678889999


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccc
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVEN  125 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~  125 (152)
                      |++++|+++.++.- .+.. ..++.+++++|++.-.
T Consensus        85 L~Ls~N~l~~l~~~-~~~~-~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          85 LNLSFNALESLSWK-TVQG-LSLQELVLSGNPLHCS  118 (156)
T ss_dssp             EECCSSCCSCCCST-TTCS-CCCCEEECCSSCCCCC
T ss_pred             eeccCCCCcccChh-hhcc-ccccccccCCCcccCC
Confidence            99999999988752 4433 3588999999998643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1e-13  Score=89.15  Aligned_cols=88  Identities=33%  Similarity=0.494  Sum_probs=74.2

Q ss_pred             cccceeeccccccCCccC----CCCCCcccEEEcCCCccCCcccccccCCCCCccEEEecCCCCccccc-hhHHHHHHHH
Q psy1563          63 DCLEELWISYNFIEKTKG----IGSLKKLKVLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE-ESAYRVEIKK  137 (152)
Q Consensus        63 ~~L~~l~l~~n~~~~l~~----~~~~~~L~~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~~~~  137 (152)
                      +.|+.+++++|.++.+++    +..+++|+.|++++|.|+++++...+.. ..++.+++.+|++..... ...|+..++.
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~-~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG-LKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTT-CCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhc-cccceeecCCCCcCcCcccchhHHHHHHH
Confidence            489999999999988754    3568999999999999999887655544 469999999999987553 3478999999


Q ss_pred             hCCCcccccCcccC
Q psy1563         138 RLPRLKKLDGEVLP  151 (152)
Q Consensus       138 ~l~~L~~l~~~~~~  151 (152)
                      .+|+|+.||+..|+
T Consensus       144 ~~P~L~~LDg~~v~  157 (162)
T d1koha1         144 RFPKLLRLDGHELP  157 (162)
T ss_dssp             TSTTCCEETTEECC
T ss_pred             HCCCCCEECcCCCc
Confidence            99999999998875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.23  E-value=6.3e-11  Score=82.68  Aligned_cols=106  Identities=26%  Similarity=0.370  Sum_probs=70.9

Q ss_pred             CCCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-CCCCCcccEEE
Q psy1563          17 PNPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKLKVLY   91 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L~~l~   91 (152)
                      +++++.|++++|......  .+..++.++.+++++|.++.++  .+..+. +|+.|++++|.++.+|. +..+++|+.|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~-~L~~L~L~~N~L~~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVY  248 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEE
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc-cceeeecccccccccccccccccCCCEEE
Confidence            456666666666665442  4566677777777777777664  233444 78888888888877754 66778888888


Q ss_pred             cCCCccCCccccc-----ccCCCCCccEEEecCCCCc
Q psy1563          92 MCHNSVKEWGELN-----KINDCPVLEDLVFCGNPIV  123 (152)
Q Consensus        92 l~~n~i~~~~~~~-----~~~~l~~L~~l~l~~n~~~  123 (152)
                      +++|+|+.++...     .......|+.+++++|++.
T Consensus       249 Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            8888887765321     1223566778888888775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7e-12  Score=79.96  Aligned_cols=89  Identities=19%  Similarity=0.223  Sum_probs=73.7

Q ss_pred             hhccCCCCCCCcEEEccCC-cccccc--CCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-CCC
Q psy1563          10 NLYKFKGPNPNTKLSLSTN-LIEKIS--GLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGS   83 (152)
Q Consensus        10 ~~~~~~~l~~l~~L~l~~n-~l~~~~--~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~   83 (152)
                      .+..+..++++++|++.+| .++.++  .|..+++|+.|++++|+++.++  .+..+. +|+.+++++|.++.++. +..
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~  101 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLSFNALESLSWKTVQ  101 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECCSSCCSCCCSTTTC
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccc-cccceeccCCCCcccChhhhc
Confidence            3566778889999999765 588885  6889999999999999999986  355665 99999999999998865 334


Q ss_pred             CCcccEEEcCCCccCC
Q psy1563          84 LKKLKVLYMCHNSVKE   99 (152)
Q Consensus        84 ~~~L~~l~l~~n~i~~   99 (152)
                      ...++.|++++|++..
T Consensus       102 ~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3         102 GLSLQELVLSGNPLHC  117 (156)
T ss_dssp             SCCCCEEECCSSCCCC
T ss_pred             cccccccccCCCcccC
Confidence            4579999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=2.4e-13  Score=90.19  Aligned_cols=121  Identities=26%  Similarity=0.287  Sum_probs=95.2

Q ss_pred             CCCCcEEEccCC--cccccc-CCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCC-CCCCcccEEEc
Q psy1563          17 PNPNTKLSLSTN--LIEKIS-GLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGI-GSLKKLKVLYM   92 (152)
Q Consensus        17 l~~l~~L~l~~n--~l~~~~-~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~-~~~~~L~~l~l   92 (152)
                      ....+.+.+.++  .++.++ .+..+++|++|++++|.++.++.+..+. +|+.|++++|.++.++.+ ..+++|+.|++
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~-~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHT-TCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCc-cccChhhccccccccccccccccccccccc
Confidence            445666777654  355555 6778899999999999999988888887 999999999999988764 34568999999


Q ss_pred             CCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCccccc
Q psy1563          93 CHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLD  146 (152)
Q Consensus        93 ~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~  146 (152)
                      ++|.++.++   .+..+++|+.+++++|.+......     ..+..+++|+.|+
T Consensus       101 ~~N~i~~l~---~~~~l~~L~~L~L~~N~i~~~~~~-----~~l~~l~~L~~L~  146 (198)
T d1m9la_         101 SYNQIASLS---GIEKLVNLRVLYMSNNKITNWGEI-----DKLAALDKLEDLL  146 (198)
T ss_dssp             SEEECCCHH---HHHHHHHSSEEEESEEECCCHHHH-----HHHTTTTTCSEEE
T ss_pred             ccccccccc---cccccccccccccccchhcccccc-----ccccCCCccceee
Confidence            999999875   355688899999999998764321     1367888888775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=2.7e-11  Score=84.64  Aligned_cols=110  Identities=20%  Similarity=0.213  Sum_probs=91.2

Q ss_pred             cCCCCCCCcEEEccCCccccccCCcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC--CCCCCccc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLK   88 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~   88 (152)
                      .+..+++++.+++..|.+..++.- .+++++.+++++|..+..+  .+..+. .++.+++++|.++.++.  +..+++|+
T Consensus       145 ~~~~l~~L~~l~l~~n~l~~l~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~L~~s~n~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLR  222 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred             ccccccccCccccccCCccccCcc-cCCccCEEECCCCcCCCCChhHhhccc-cccccccccccccccccccccccccce
Confidence            456788999999999999887621 2678999999999887654  455565 89999999999988754  67889999


Q ss_pred             EEEcCCCccCCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          89 VLYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        89 ~l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      .|++++|.++.++.  .+..+++|+.+++++|+++...
T Consensus       223 ~L~L~~N~L~~lp~--~l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         223 ELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             EEECCSSCCSSCCT--TTTTCSSCCEEECCSSCCCCCC
T ss_pred             eeeccccccccccc--ccccccCCCEEECCCCccCccC
Confidence            99999999998864  6778999999999999988654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.06  E-value=9.4e-11  Score=82.13  Aligned_cols=107  Identities=24%  Similarity=0.279  Sum_probs=65.3

Q ss_pred             CCcEEEccCCcccc---cc-CCcCCccCcEEEcCC-Cccc-ccc-CccccccccceeeccccccCCccC--CCCCCcccE
Q psy1563          19 PNTKLSLSTNLIEK---IS-GLMSLKKLRILALGR-NMIK-TFT-GLEPLGDCLEELWISYNFIEKTKG--IGSLKKLKV   89 (152)
Q Consensus        19 ~l~~L~l~~n~l~~---~~-~l~~~~~L~~l~l~~-n~~~-~~~-~~~~~~~~L~~l~l~~n~~~~l~~--~~~~~~L~~   89 (152)
                      +++.|+++++.++.   +| .+..+++|++|++++ |.++ .+| .+..+. +|+.|++++|.+..++.  +..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccccc-ccchhhhccccccccccccccchhhhcc
Confidence            46667777766653   34 566677777777765 4554 455 455555 77777777776665533  455666777


Q ss_pred             EEcCCCccCCcccccccCCCCCccEEEecCCCCccccc
Q psy1563          90 LYMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        90 l~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      ++++.|.+.... ...+..++.++.+++++|.+.+..+
T Consensus       130 l~l~~N~~~~~~-p~~l~~l~~L~~l~l~~n~l~~~ip  166 (313)
T d1ogqa_         130 LDFSYNALSGTL-PPSISSLPNLVGITFDGNRISGAIP  166 (313)
T ss_dssp             EECCSSEEESCC-CGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             cccccccccccC-chhhccCcccceeeccccccccccc
Confidence            777666554322 1245566667777777776665443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.7e-10  Score=74.84  Aligned_cols=130  Identities=18%  Similarity=0.105  Sum_probs=78.7

Q ss_pred             CCCCCCCcEEEccCCccccccC---CcCCccCcEEEcCCCcccccc--CccccccccceeeccccccCCccC-CCCCCcc
Q psy1563          14 FKGPNPNTKLSLSTNLIEKISG---LMSLKKLRILALGRNMIKTFT--GLEPLGDCLEELWISYNFIEKTKG-IGSLKKL   87 (152)
Q Consensus        14 ~~~l~~l~~L~l~~n~l~~~~~---l~~~~~L~~l~l~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~l~~-~~~~~~L   87 (152)
                      +.++++|+.++++++.+...+.   +..+..+..+...++.+..++  .+..+...++.++++.|.++.++. .....++
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l  178 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL  178 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCE
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhh
Confidence            3445555555555555543331   222233333333444444443  222233367778888888887754 3445555


Q ss_pred             cEE-EcCCCccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHhCCCcccccCccc
Q psy1563          88 KVL-YMCHNSVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKKLDGEVL  150 (152)
Q Consensus        88 ~~l-~l~~n~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~  150 (152)
                      ..+ .+.+|.+++++. ..+..+++|+.+++++|.++..+...      +..+++|+.++...+
T Consensus       179 ~~~~~l~~n~l~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~------~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         179 DELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSLPSYG------LENLKKLRARSTYNL  235 (242)
T ss_dssp             EEEECTTCTTCCCCCT-TTTTTSCCCSEEECTTSCCCCCCSSS------CTTCCEEESSSEESS
T ss_pred             hccccccccccccccH-HHhcCCCCCCEEECCCCcCCccCHHH------HcCCcccccCcCCCC
Confidence            554 577888998874 35778999999999999998765432      577788887766543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.02  E-value=1.8e-09  Score=75.90  Aligned_cols=99  Identities=16%  Similarity=0.195  Sum_probs=76.4

Q ss_pred             CCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCcc
Q psy1563          18 NPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNSV   97 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~i   97 (152)
                      ..++.|+++++.++.+|.+  .++|++|++++|.++.+|..  . ++|+.|++++|.++.++.+  .+.|++|++++|.+
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~-~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l  110 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--P-QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQL  110 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--C-TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCC
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc--h-hhhhhhhhhhcccchhhhh--cccccccccccccc
Confidence            3678899999998888743  56889999999998888753  2 2788889998888877653  24688899999988


Q ss_pred             CCcccccccCCCCCccEEEecCCCCcccc
Q psy1563          98 KEWGELNKINDCPVLEDLVFCGNPIVENL  126 (152)
Q Consensus        98 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  126 (152)
                      +.++.   .+.++.|+++++.++.+...+
T Consensus       111 ~~lp~---~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         111 EKLPE---LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             SSCCC---CTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccc---hhhhccceeeccccccccccc
Confidence            88763   356788888988888776544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.88  E-value=6.9e-09  Score=72.40  Aligned_cols=112  Identities=15%  Similarity=0.160  Sum_probs=71.6

Q ss_pred             cCCCCCCCcEEEccCCccc-ccc-CCcCCccC-cEEEcCCCccccc------------------------c-Cccccccc
Q psy1563          13 KFKGPNPNTKLSLSTNLIE-KIS-GLMSLKKL-RILALGRNMIKTF------------------------T-GLEPLGDC   64 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~-~~~-~l~~~~~L-~~l~l~~n~~~~~------------------------~-~~~~~~~~   64 (152)
                      .+.+++.++.+++++|.+. .+| .+..+..+ +.+++++|+++..                        + .+... +.
T Consensus       144 ~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~-~~  222 (313)
T d1ogqa_         144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KN  222 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT-SC
T ss_pred             hhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            3556666777777776665 334 34444443 5566666555421                        1 01112 36


Q ss_pred             cceeeccccccCCc-cCCCCCCcccEEEcCCCccC-CcccccccCCCCCccEEEecCCCCccccc
Q psy1563          65 LEELWISYNFIEKT-KGIGSLKKLKVLYMCHNSVK-EWGELNKINDCPVLEDLVFCGNPIVENLE  127 (152)
Q Consensus        65 L~~l~l~~n~~~~l-~~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~l~~L~~l~l~~n~~~~~~~  127 (152)
                      ++.++++.+.++.. +.+..+++++.|++++|+++ .+|.  .+..+++|+.|++++|.+++..|
T Consensus       223 l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~--~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             CSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccccccccccccccccccccCccCeecccCCh--HHhCCCCCCEEECcCCcccccCC
Confidence            77777777776644 34677788888888888887 4543  67778888899999988886554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.86  E-value=1.8e-08  Score=70.52  Aligned_cols=80  Identities=28%  Similarity=0.312  Sum_probs=68.0

Q ss_pred             CCCCcEEEccCCccccccCCcCCccCcEEEcCCCccccccCccccccccceeeccccccCCccCCCCCCcccEEEcCCCc
Q psy1563          17 PNPNTKLSLSTNLIEKISGLMSLKKLRILALGRNMIKTFTGLEPLGDCLEELWISYNFIEKTKGIGSLKKLKVLYMCHNS   96 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~~~l~~~~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~l~~~~~~~~L~~l~l~~n~   96 (152)
                      +++|++|++++|+|+.+|..  ..+|+.|++++|.++.++.+.   +.|+.|++++|.++.++..+.+++|++++++++.
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhhc---cccccccccccccccccchhhhccceeecccccc
Confidence            57899999999999988843  468999999999998877543   3799999999999999888889999999999988


Q ss_pred             cCCcc
Q psy1563          97 VKEWG  101 (152)
Q Consensus        97 i~~~~  101 (152)
                      ++..+
T Consensus       132 ~~~~~  136 (353)
T d1jl5a_         132 LKKLP  136 (353)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            77543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.3e-08  Score=66.29  Aligned_cols=83  Identities=16%  Similarity=0.208  Sum_probs=53.2

Q ss_pred             CCCcEEEccCCcccccc--CCcCCccCcEEEcCCCcccc-cc--Cccccccccceeeccc-cccCCccC--CCCCCcccE
Q psy1563          18 NPNTKLSLSTNLIEKIS--GLMSLKKLRILALGRNMIKT-FT--GLEPLGDCLEELWISY-NFIEKTKG--IGSLKKLKV   89 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~--~l~~~~~L~~l~l~~n~~~~-~~--~~~~~~~~L~~l~l~~-n~~~~l~~--~~~~~~L~~   89 (152)
                      +.+++|++++|.++.++  .+..+++|+++++++|.+.. ++  .+..+. .++.+.+.. |.+..++.  +..+++|+.
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~-~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP-KLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT-TCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc-ccccccccccccccccccccccccccccc
Confidence            47889999999998876  57888999999999887754 32  233343 555555433 34443322  455666666


Q ss_pred             EEcCCCccCCcc
Q psy1563          90 LYMCHNSVKEWG  101 (152)
Q Consensus        90 l~l~~n~i~~~~  101 (152)
                      +++++|.++..+
T Consensus       108 l~l~~~~l~~~~  119 (242)
T d1xwdc1         108 LLISNTGIKHLP  119 (242)
T ss_dssp             EEEESCCCCSCC
T ss_pred             cccchhhhcccc
Confidence            666666655443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.2e-08  Score=68.34  Aligned_cols=58  Identities=17%  Similarity=0.132  Sum_probs=31.5

Q ss_pred             CCCcccEEEcCCC-ccCCcccccccCCCCCccEEEecCC-CCccccchhHHHHHHHHhCCCcccccC
Q psy1563          83 SLKKLKVLYMCHN-SVKEWGELNKINDCPVLEDLVFCGN-PIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus        83 ~~~~L~~l~l~~n-~i~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                      .+++|++|++++| .+++.. ...+..+++|+++++.+| .+++....      .++++|+|+.|+.
T Consensus       173 ~~~~L~~L~L~~~~~itd~~-~~~l~~~~~L~~L~L~~C~~i~~~~l~------~L~~~~~L~~L~l  232 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLL------ELGEIPTLKTLQV  232 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGG------GGGGCTTCCEEEC
T ss_pred             ccccccccccccccCCCchh-hhhhcccCcCCEEECCCCCCCChHHHH------HHhcCCCCCEEee
Confidence            4566777777665 455432 234555667777777764 34332211      1456666666653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6.4e-08  Score=66.76  Aligned_cols=74  Identities=20%  Similarity=0.251  Sum_probs=45.3

Q ss_pred             cccceeeccccc-cCCc--cCCCCCCcccEEEcCCC-ccCCcccccccCCCCCccEEEecCCCCccccchhHHHHHHHHh
Q psy1563          63 DCLEELWISYNF-IEKT--KGIGSLKKLKVLYMCHN-SVKEWGELNKINDCPVLEDLVFCGNPIVENLEESAYRVEIKKR  138 (152)
Q Consensus        63 ~~L~~l~l~~n~-~~~l--~~~~~~~~L~~l~l~~n-~i~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~  138 (152)
                      |+|+.+++++|. +++.  ..+..+++|++|+++++ .+++.. ...++.+++|+.+++.++ +....     ...+...
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~-l~~L~~~~~L~~L~l~~~-~~d~~-----l~~l~~~  247 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI-VPDGT-----LQLLKEA  247 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS-SCTTC-----HHHHHHH
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH-HHHHhcCCCCCEEeeeCC-CCHHH-----HHHHHHh
Confidence            477888887753 4422  33567778888888875 566533 335566778888888776 33211     1223456


Q ss_pred             CCCcc
Q psy1563         139 LPRLK  143 (152)
Q Consensus       139 l~~L~  143 (152)
                      +|+|+
T Consensus       248 lp~L~  252 (284)
T d2astb2         248 LPHLQ  252 (284)
T ss_dssp             STTSE
T ss_pred             Ccccc
Confidence            77765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7.2e-08  Score=69.53  Aligned_cols=105  Identities=16%  Similarity=0.184  Sum_probs=64.8

Q ss_pred             CCcEEEccCCcccccc---CCcCCccCcEEEcCCCccccc-----c-CccccccccceeeccccccCCcc------CCC-
Q psy1563          19 PNTKLSLSTNLIEKIS---GLMSLKKLRILALGRNMIKTF-----T-GLEPLGDCLEELWISYNFIEKTK------GIG-   82 (152)
Q Consensus        19 ~l~~L~l~~n~l~~~~---~l~~~~~L~~l~l~~n~~~~~-----~-~~~~~~~~L~~l~l~~n~~~~l~------~~~-   82 (152)
                      +|++|++++|+++...   -+..+++++++++++|.++..     . .+.... +|+.|++++|.++...      .+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4677888888886542   344567777888888877632     1 223343 7888888877765321      122 


Q ss_pred             CCCcccEEEcCCCccCCccc---ccccCCCCCccEEEecCCCCcc
Q psy1563          83 SLKKLKVLYMCHNSVKEWGE---LNKINDCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        83 ~~~~L~~l~l~~n~i~~~~~---~~~~~~l~~L~~l~l~~n~~~~  124 (152)
                      ...+|++|++++|.+++...   ...+..++.|+.+++.+|.+..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            23467888888887765321   1134567778888888877653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.3e-07  Score=58.76  Aligned_cols=79  Identities=20%  Similarity=0.127  Sum_probs=56.0

Q ss_pred             cCCccCcEEEcCCCccccccCcc----ccccccceeeccccccCCccCC--CCCCcccEEEcCCCccCCcccc------c
Q psy1563          37 MSLKKLRILALGRNMIKTFTGLE----PLGDCLEELWISYNFIEKTKGI--GSLKKLKVLYMCHNSVKEWGEL------N  104 (152)
Q Consensus        37 ~~~~~L~~l~l~~n~~~~~~~~~----~~~~~L~~l~l~~n~~~~l~~~--~~~~~L~~l~l~~n~i~~~~~~------~  104 (152)
                      ..+++|+++++++|+++.++.+.    .+ ++|+.+++++|.++.++.+  .....++.+++.+|.+......      .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l-~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKA-PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHS-TTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhC-CcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            46788999999999998775432    34 4899999999999888652  2335688899999988753221      1


Q ss_pred             ccCCCCCccEEE
Q psy1563         105 KINDCPVLEDLV  116 (152)
Q Consensus       105 ~~~~l~~L~~l~  116 (152)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            134577777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.18  E-value=1.2e-06  Score=61.61  Aligned_cols=107  Identities=19%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             CCCCcEEEccCCccccc-----c-CCcCCccCcEEEcCCCccccc------c-CccccccccceeeccccccCCc-----
Q psy1563          17 PNPNTKLSLSTNLIEKI-----S-GLMSLKKLRILALGRNMIKTF------T-GLEPLGDCLEELWISYNFIEKT-----   78 (152)
Q Consensus        17 l~~l~~L~l~~n~l~~~-----~-~l~~~~~L~~l~l~~n~~~~~------~-~~~~~~~~L~~l~l~~n~~~~l-----   78 (152)
                      .+.++.+.+++|.++..     . .+..+++++.+++++|.++.-      . .+... ++|+.+++++|.++..     
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~L  235 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSAL  235 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcch-hhhcccccccccccccccccc
Confidence            44555555555555321     1 233455666666666665421      1 22223 2666677766665422     


Q ss_pred             -cCCCCCCcccEEEcCCCccCCcccc---cccC--CCCCccEEEecCCCCcc
Q psy1563          79 -KGIGSLKKLKVLYMCHNSVKEWGEL---NKIN--DCPVLEDLVFCGNPIVE  124 (152)
Q Consensus        79 -~~~~~~~~L~~l~l~~n~i~~~~~~---~~~~--~l~~L~~l~l~~n~~~~  124 (152)
                       ..+..+++|+.|++++|.|++....   ..+.  ..+.|+++++++|.+..
T Consensus       236 ~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence             1144566666777777666542211   0111  12456667777766543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.10  E-value=5.8e-07  Score=63.17  Aligned_cols=41  Identities=20%  Similarity=0.020  Sum_probs=27.5

Q ss_pred             cCCCCCCCcEEEccCCccccc-----c-CCcCCccCcEEEcCCCccc
Q psy1563          13 KFKGPNPNTKLSLSTNLIEKI-----S-GLMSLKKLRILALGRNMIK   53 (152)
Q Consensus        13 ~~~~l~~l~~L~l~~n~l~~~-----~-~l~~~~~L~~l~l~~n~~~   53 (152)
                      .+..+++|+.|++++|.+...     . .+...++|+.+++++|.+.
T Consensus        88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHhhCCCcccccccccccccccccchhhhhcccccchheeccccccc
Confidence            345677888888888877542     1 3445677888888877653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.8e-07  Score=65.09  Aligned_cols=125  Identities=20%  Similarity=0.231  Sum_probs=52.8

Q ss_pred             CCCcEEEccCCcccccc------CCcCCccCcEEEcCCCccccc-----c-CccccccccceeeccccccCCcc------
Q psy1563          18 NPNTKLSLSTNLIEKIS------GLMSLKKLRILALGRNMIKTF-----T-GLEPLGDCLEELWISYNFIEKTK------   79 (152)
Q Consensus        18 ~~l~~L~l~~n~l~~~~------~l~~~~~L~~l~l~~n~~~~~-----~-~~~~~~~~L~~l~l~~n~~~~l~------   79 (152)
                      ..++.++++++.++...      .+...++|+.|++++|.++..     . .+....+.|+.|++++|.++...      
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            34555555555544221      112334555555555555421     1 11111124555566555554311      


Q ss_pred             CCCCCCcccEEEcCCCccCCcccc---cccC-CCCCccEEEecCCCCccccchhHHHHHHHHhCCCccc
Q psy1563          80 GIGSLKKLKVLYMCHNSVKEWGEL---NKIN-DCPVLEDLVFCGNPIVENLEESAYRVEIKKRLPRLKK  144 (152)
Q Consensus        80 ~~~~~~~L~~l~l~~n~i~~~~~~---~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~  144 (152)
                      .+..+++|++|++++|.|++....   ..+. ....|+.+++.++.+.+...  ..-..+....|+|++
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~--~~l~~l~~~~~~l~~  458 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME--DRLQALEKDKPSLRV  458 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH--HHHHHHHHHCTTSEE
T ss_pred             HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH--HHHHHHHHhCCCCEE
Confidence            123345555666665555531110   0111 12245556665555543222  222233444555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=2.4e-05  Score=49.34  Aligned_cols=107  Identities=13%  Similarity=0.127  Sum_probs=72.9

Q ss_pred             CCCCCCcEEEccCC-ccccc------cCCcCCccCcEEEcCCCccccc--cCc----cccccccceeeccccccCCcc--
Q psy1563          15 KGPNPNTKLSLSTN-LIEKI------SGLMSLKKLRILALGRNMIKTF--TGL----EPLGDCLEELWISYNFIEKTK--   79 (152)
Q Consensus        15 ~~l~~l~~L~l~~n-~l~~~------~~l~~~~~L~~l~l~~n~~~~~--~~~----~~~~~~L~~l~l~~n~~~~l~--   79 (152)
                      .+.+.|++|+++++ .++..      ..+...++|+.|++++|.+..-  ..+    ... +.|+.+++++|.++.-.  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n-~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhc-ccccceeeehhhcchHHHH
Confidence            35689999999874 56532      1466778899999999988732  222    223 37999999999886421  


Q ss_pred             ----CCCCCCcccEEEcCCCccCCccc------ccccCCCCCccEEEecCCCC
Q psy1563          80 ----GIGSLKKLKVLYMCHNSVKEWGE------LNKINDCPVLEDLVFCGNPI  122 (152)
Q Consensus        80 ----~~~~~~~L~~l~l~~n~i~~~~~------~~~~~~l~~L~~l~l~~n~~  122 (152)
                          .+...++|+.|++++|.+..+..      ...+...+.|..+++.++..
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence                26677889999999887664321      11234467788888876643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.10  E-value=0.00042  Score=43.42  Aligned_cols=110  Identities=10%  Similarity=0.005  Sum_probs=73.6

Q ss_pred             CCccCcEEEcCCC-cccc--c----cCccccccccceeeccccccCCc--cC----CCCCCcccEEEcCCCccCCccc--
Q psy1563          38 SLKKLRILALGRN-MIKT--F----TGLEPLGDCLEELWISYNFIEKT--KG----IGSLKKLKVLYMCHNSVKEWGE--  102 (152)
Q Consensus        38 ~~~~L~~l~l~~n-~~~~--~----~~~~~~~~~L~~l~l~~n~~~~l--~~----~~~~~~L~~l~l~~n~i~~~~~--  102 (152)
                      +.++|+.++++++ .++.  +    ..+.... +|+.|++++|.++.-  ..    +...+.|+.|++++|.+++...  
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~-~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCC-ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            4578999999975 5652  1    1333444 899999999988643  22    4456899999999999986321  


Q ss_pred             -ccccCCCCCccEEEecCCCCccccch-hHHHHHHHHhCCCcccccCc
Q psy1563         103 -LNKINDCPVLEDLVFCGNPIVENLEE-SAYRVEIKKRLPRLKKLDGE  148 (152)
Q Consensus       103 -~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~l~~L~~l~~~  148 (152)
                       ...+...+.|+.|++.+|.....-.. ......++..-+.|+.|+..
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~  139 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  139 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCc
Confidence             12355678899999998865532111 12234556777888877653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.47  E-value=0.0017  Score=40.35  Aligned_cols=107  Identities=14%  Similarity=0.073  Sum_probs=69.5

Q ss_pred             CCCCCCcEEEccC-Cccccc-----c-CCcCCccCcEEEcCCCcccccc------CccccccccceeeccccccCCc---
Q psy1563          15 KGPNPNTKLSLST-NLIEKI-----S-GLMSLKKLRILALGRNMIKTFT------GLEPLGDCLEELWISYNFIEKT---   78 (152)
Q Consensus        15 ~~l~~l~~L~l~~-n~l~~~-----~-~l~~~~~L~~l~l~~n~~~~~~------~~~~~~~~L~~l~l~~n~~~~l---   78 (152)
                      .+.+.|++|.+++ +.++..     - .+...++|+.|++++|.++.-.      .+.... +++.++++.+.++.-   
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~-~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcc-cchhhhhccccccchhHH
Confidence            4678999999987 456532     1 4567889999999999886321      222333 788899988877532   


Q ss_pred             ---cCCCCCCcccEEEc--CCCccCCccc---ccccCCCCCccEEEecCCCC
Q psy1563          79 ---KGIGSLKKLKVLYM--CHNSVKEWGE---LNKINDCPVLEDLVFCGNPI  122 (152)
Q Consensus        79 ---~~~~~~~~L~~l~l--~~n~i~~~~~---~~~~~~l~~L~~l~l~~n~~  122 (152)
                         ..+...++++.+++  +.|.+.+...   ...+...+.|+.+++..+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence               12456677877655  4556654221   11234577888898877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.37  E-value=0.00052  Score=42.78  Aligned_cols=108  Identities=16%  Similarity=0.100  Sum_probs=70.6

Q ss_pred             cCCccCcEEEcCC-Cccccc------cCccccccccceeeccccccCCccC------CCCCCcccEEEcCCCccCCccc-
Q psy1563          37 MSLKKLRILALGR-NMIKTF------TGLEPLGDCLEELWISYNFIEKTKG------IGSLKKLKVLYMCHNSVKEWGE-  102 (152)
Q Consensus        37 ~~~~~L~~l~l~~-n~~~~~------~~~~~~~~~L~~l~l~~n~~~~l~~------~~~~~~L~~l~l~~n~i~~~~~-  102 (152)
                      .+.++|+.+++++ +.++.-      ..+.... +|+.|++++|.++.-..      +...+.++.++++.|.++.-.. 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~-~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCC-ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            3568899999997 456521      1333454 89999999998764311      4567899999999998875321 


Q ss_pred             --ccccCCCCCccEEEec--CCCCccccchhHHHHHHHHhCCCcccccC
Q psy1563         103 --LNKINDCPVLEDLVFC--GNPIVENLEESAYRVEIKKRLPRLKKLDG  147 (152)
Q Consensus       103 --~~~~~~l~~L~~l~l~--~n~~~~~~~~~~~~~~~~~~l~~L~~l~~  147 (152)
                        ...+...+.++.+.+.  +|.+.....  .....++...+.|+.|+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~--~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVE--MEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHH--HHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHH--HHHHHHHHhCCCcCEEeC
Confidence              1234556778876664  556643221  344455678888888864