Psyllid ID: psy1567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
Protein Sequence
MFPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccEEccccccEEEc
Coil and Loop (DISEMBL)
MFPQQQTFFQFGLrlgaacpsnynpaDYFIQLLAVVPSREETCRNTIEMVCDtfdrseygiKLAQATELRGDLQAKAIlggkmdifsngnvanrspykanWWTQFKAVLWRSwlsvrkdptLMKVRLLQTLMVSIMIGLIYfgqnldqdgvmnINGALFICLTNMTFQNVFAVISVFCSELPLFMrehqngmyrVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILggkmdifsngnvanrspykanWWTQFKAVLWRSwlsvrkdptLMKVRLLQTLMVSIMIGLIYfgqnldqdgvmnINGALFICLTNMTFQNVFAVISVFCSELPLFMrehqngmyrVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSvalsigppviipfllfggfflnaglmgvaif
Flexible Loop (DISEMBL)
MFPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF
Low Complexity Region (SEG)
MFPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYliscisssvsvalsiGPPVIIPfllfggfflnaglmgVAIF
Disordered region (IsUnstruct)
******TFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI*
Disordered Region (DISOPRED)
*F**QQTFFQFGLRLGAACPSNYNPADYFIQLLAV*************MVCDTFDRSEYGIKLAQATELRGDL***********************YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF
Disordered Region (DISEMBL)
MFPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF
Disordered Region (DISPRO)
MFPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAK****************NRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	463	2.2.26 [Sep-21-2011]
Q16928	709	Protein white OS=Anophele	N/A	N/A	0.371	0.242	0.656	9e-74
Q27256	695	Protein white OS=Anophele	yes	N/A	0.380	0.253	0.659	1e-72
Q17320	679	Protein white OS=Ceratiti	N/A	N/A	0.438	0.298	0.616	1e-69
P10090	687	Protein white OS=Drosophi	yes	N/A	0.380	0.256	0.649	8e-69
Q05360	677	Protein white OS=Lucilia	N/A	N/A	0.384	0.262	0.617	1e-67
Q11180	598	ABC transporter ATP-bindi	no	N/A	0.524	0.406	0.349	3e-38
Q9ZU35	725	ABC transporter G family	yes	N/A	0.358	0.228	0.310	2e-26
Q9H172	646	ATP-binding cassette sub-	yes	N/A	0.384	0.275	0.349	2e-24
P45843	666	Protein scarlet OS=Drosop	no	N/A	0.475	0.330	0.279	2e-23
Q09466	610	ABC transporter ATP-bindi	no	N/A	0.410	0.311	0.302	6e-23

>sp|Q16928|WHITE_ANOAL Protein white OS=Anopheles albimanus GN=W PE=3 SV=1

 Score =  278 bits (710), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 128/195 (65%), Positives = 164/195 (84%)

Query: 262 NRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVM 321
           + + Y+A+WWTQF  +LWRSWLSV KDP L+KVRLLQT MV+ +IG IYFGQ LDQDGVM
Sbjct: 423 DSTGYRASWWTQFYCILWRSWLSVLKDPMLVKVRLLQTAMVASLIGSIYFGQVLDQDGVM 482

Query: 322 NINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLA 381
           NING+LF+ LTNMTFQNVFAVI+VF +ELP+F+RE ++ +YRVD YFL KT+AE+P+F+A
Sbjct: 483 NINGSLFLFLTNMTFQNVFAVINVFSAELPVFLREKRSRLYRVDTYFLGKTIAELPLFIA 542

Query: 382 IPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPV 441
           +P +FTS+ Y M+ L    S +LT   I+T+V+ V+TSFGYLISC SSS+S+ALS+GPPV
Sbjct: 543 VPFVFTSITYPMIGLKAAISHYLTTLFIVTLVANVSTSFGYLISCASSSISMALSVGPPV 602

Query: 442 IIPFLLFGGFFLNAG 456
           +IPFL+FGGFFLN+ 
Sbjct: 603 VIPFLIFGGFFLNSA 617

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.
Anopheles albimanus (taxid: 7167)

>sp|Q27256|WHITE_ANOGA Protein white OS=Anopheles gambiae GN=w PE=2 SV=1

 Score =  274 bits (700), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 126/191 (65%), Positives = 162/191 (84%)

Query: 266 YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNING 325
           Y+++WWTQF  +LWRSWLSV KDP L+KVRLLQT MV+ +IG IYFGQ LDQDGVMNING
Sbjct: 414 YRSSWWTQFYCILWRSWLSVLKDPMLVKVRLLQTAMVATLIGSIYFGQVLDQDGVMNING 473

Query: 326 ALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVI 385
           +LF+ LTNMTFQNVFAVI+VF +ELP+F+RE ++ +YRVD YFL KT+AE+P+F+A+P +
Sbjct: 474 SLFLFLTNMTFQNVFAVINVFSAELPVFLREKRSRLYRVDTYFLGKTIAELPLFIAVPFV 533

Query: 386 FTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPF 445
           FTS+ Y M+ L    + +LT   I+T+V+ V+TSFGYLISC SSS+S+ALS+GPPV+IPF
Sbjct: 534 FTSITYPMIGLRTGATHYLTTLFIVTLVANVSTSFGYLISCASSSISMALSVGPPVVIPF 593

Query: 446 LLFGGFFLNAG 456
           L+FGGFFLN+ 
Sbjct: 594 LIFGGFFLNSA 604

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Anopheles gambiae (taxid: 7165)

>sp|Q17320|WHITE_CERCA Protein white OS=Ceratitis capitata GN=W PE=2 SV=1

 Score =  263 bits (673), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/206 (61%), Positives = 162/206 (78%), Gaps = 3/206 (1%)

Query: 254 IFSNG---NVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIY 310
           + SNG      N   YKA+W+ QF+AVLWRSWLSV K+P L+KVRLLQT MV+++IGLI+
Sbjct: 382 VKSNGFGKEDENEYTYKASWFMQFRAVLWRSWLSVLKEPLLVKVRLLQTTMVAVLIGLIF 441

Query: 311 FGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLC 370
            GQ L Q GVMNINGA+F+ LTNMTFQN FA I+VF +ELP+FMRE ++ +YR D YFL 
Sbjct: 442 LGQQLTQVGVMNINGAIFLFLTNMTFQNSFATITVFTTELPVFMRETRSRLYRCDTYFLG 501

Query: 371 KTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSS 430
           KT+AE+P+FL +P +FT++ Y ++ L P    F TA  ++T+V+ V+TSFGYLISC  SS
Sbjct: 502 KTIAELPLFLVVPFLFTAIAYPLIGLRPGVDHFFTALALVTLVANVSTSFGYLISCACSS 561

Query: 431 VSVALSIGPPVIIPFLLFGGFFLNAG 456
            S+ALS+GPPVIIPFLLFGGFFLN+G
Sbjct: 562 TSMALSVGPPVIIPFLLFGGFFLNSG 587

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Ceratitis capitata (taxid: 7213)

>sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2

 Score =  261 bits (667), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 124/191 (64%), Positives = 156/191 (81%)

Query: 266 YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNING 325
           YKA W+ QF+AVLWRSWLSV K+P L+KVRL+QT MV+I+IGLI+ GQ L Q GVMNING
Sbjct: 405 YKATWFMQFRAVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGLIFLGQQLTQVGVMNING 464

Query: 326 ALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVI 385
           A+F+ LTNMTFQNVFA I+VF SELP+FMRE ++ +YR D YFL KT+AE+P+FL +P++
Sbjct: 465 AIFLFLTNMTFQNVFATINVFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLV 524

Query: 386 FTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPF 445
           FT++ Y M+ L      F     ++T+V+ V+TSFGYLISC SSS S+ALS+GPPVIIPF
Sbjct: 525 FTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISCASSSTSMALSVGPPVIIPF 584

Query: 446 LLFGGFFLNAG 456
           LLFGGFFLN+G
Sbjct: 585 LLFGGFFLNSG 595

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q05360|WHITE_LUCCU Protein white OS=Lucilia cuprina GN=W PE=2 SV=2

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 158/191 (82%)

Query: 266 YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNING 325
           YKA+W+TQF+A++WRSW+S  K+P L+KVRL+QT MV+++IGLI+  Q + Q GVMNING
Sbjct: 396 YKASWFTQFRAIMWRSWISTLKEPLLVKVRLIQTTMVAVLIGLIFLNQPMTQVGVMNING 455

Query: 326 ALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVI 385
           A+F+ LTNMTFQNVFAVI+VF SELP+FMRE ++ +YR D YFL KTLAE+P+FL +P +
Sbjct: 456 AIFLFLTNMTFQNVFAVINVFTSELPVFMRETRSRLYRCDTYFLGKTLAELPLFLVVPFL 515

Query: 386 FTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPF 445
           F ++ Y M+ L P  + FL+A  ++T+V+ V+TSFGYLISC S+S S+ALS+GPP+ IPF
Sbjct: 516 FIAIAYPMIGLRPGITHFLSALALVTLVANVSTSFGYLISCASTSTSMALSVGPPLTIPF 575

Query: 446 LLFGGFFLNAG 456
           LLFGG FLN+G
Sbjct: 576 LLFGGVFLNSG 586

May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color.

Lucilia cuprina (taxid: 7375)

>sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 143/255 (56%), Gaps = 12/255 (4%)

Query: 14  RLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYG---IKLAQATELR 70
           + G  CP+ YNPAD+ I+ LAV+ S   T   TI  +   F  ++ G   + +  A +LR
Sbjct: 230 KCGYPCPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLSTDLGQSVLAIGNANKLR 289

Query: 71  GDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQT 130
               A + + G  D            Y A++WTQF A+ WRSWL+V +DP L+ VRLLQ 
Sbjct: 290 ----AASFVTGS-DTSEKTKTFFNQDYNASFWTQFLALFWRSWLTVIRDPNLLSVRLLQI 344

Query: 131 LMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQN 190
           L+ + + G+++F   +    +++ING +F  + NM F   F  + V  +ELP+ +RE+ N
Sbjct: 345 LITAFITGIVFFQTPVTPATIISINGIMFNHIRNMNFMLQFPNVPVITAELPIVLRENAN 404

Query: 191 GMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRF----LTATLIITMAKA 246
           G+YR   YFL K +AE+P ++ +P+++ +++Y+M  L P F  +    L   LI  +A +
Sbjct: 405 GVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYCFASLVTILITNVAIS 464

Query: 247 ILGGKMDIFSNGNVA 261
           I      IF+N +VA
Sbjct: 465 ISYAVATIFANTDVA 479

Caenorhabditis elegans (taxid: 6239)

>sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 99/187 (52%)

Query: 269 NWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALF 328
            WW QF  +L R+W+   +D    KVR   ++  +++ G +++     Q  + +  G L 
Sbjct: 389 GWWRQFFLLLKRAWMQASRDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQ 448

Query: 329 ICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTS 388
           +   N     +   + VF  E  +  RE   G Y +  Y L KT+AE+PI  A P++F +
Sbjct: 449 VAAINTAMAALTKTVGVFPKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGA 508

Query: 389 VMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLF 448
           V+Y M  LNP  SRF     I+T+ S  A++ G  +  +  S   A+++GP ++  F++F
Sbjct: 509 VLYPMARLNPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVF 568

Query: 449 GGFFLNA 455
           GG+++NA
Sbjct: 569 GGYYVNA 575

Arabidopsis thaliana (taxid: 3702)

>sp|Q9H172|ABCG4_HUMAN ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 105/189 (55%)

Query: 266 YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNING 325
           +  +  TQF  +  R++LS+ +D  L  +R +  +++ ++IGL+Y     D   V N  G
Sbjct: 366 FATSTLTQFCILFKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYLHIGDDASKVFNNTG 425

Query: 326 ALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVI 385
            LF  +  + F  +   +  F  E+ +FMREH N  Y +  Y+L KT+A+VP  +  PV+
Sbjct: 426 CLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVV 485

Query: 386 FTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPF 445
           + S++Y+M       SRFL  + + T  + VA S G LI   S+S+ VA  +GP   IP 
Sbjct: 486 YCSIVYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNSLQVATFVGPVTAIPV 545

Query: 446 LLFGGFFLN 454
           LLF GFF++
Sbjct: 546 LLFSGFFVS 554

May be involved in macrophage lipid homeostasis.

Homo sapiens (taxid: 9606)

>sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 16  GAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQA 75
           G  CP  YNPAD+ I +LA  P  E+  + + + +CD F  S    +      L   +  
Sbjct: 311 GYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMAQ 370

Query: 76  KAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSI 135
                   ++ S   VA        W+ +F  V  R+ L++ +DPT+  +R +Q + ++ 
Sbjct: 371 SGNFPFDTEVESFRGVA--------WYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAF 422

Query: 136 MIGLIYFGQNL-DQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYR 194
           +IG  + G     Q GV  + GALFI ++  T+  +++V+++F    PLFMRE ++G+Y 
Sbjct: 423 IIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYS 482

Query: 195 VDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITM 243
              Y+    LA +P  +  P+IF  + Y++  L   F  F    + + +
Sbjct: 483 TGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVL 531

Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules.

Drosophila melanogaster (taxid: 7227)

>sp|Q09466|WHT3_CAEEL ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=3 SV=1

 Score =  108 bits (271), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 107/192 (55%), Gaps = 2/192 (1%)

Query: 265 PYKAN--WWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN 322
           PY  N  ++ +  A+L R+ L V + P  M+++L+Q +++ + IG +Y+ Q LD  GV N
Sbjct: 333 PYIENPGFFAETGALLKRACLDVIRSPAQMRMKLIQKVVMGLFIGSLYWQQPLDPRGVRN 392

Query: 323 INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAI 382
            N AL+  +  +TF  +F +++    ELPL  RE+ +G++ V  Y++ + L+ +P+F   
Sbjct: 393 TNSALYFLIAELTFSTMFGIMTFMEHELPLIAREYHDGLFYVISYYISRFLSYLPLFTID 452

Query: 383 PVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVI 442
             +   + Y+M+ LN  + +   + LI  +V   ATS G  ++C+  + S+A++   P  
Sbjct: 453 GALMIVISYWMIGLNSTWQQVAKSILISVLVEQSATSCGLFLACLFETTSLAIAFAVPAS 512

Query: 443 IPFLLFGGFFLN 454
             F L  G + N
Sbjct: 513 GLFALLSGLYGN 524

Required for efficient RNA interference (RNAi) of pop-1 indicating a role in the germline development.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
53828415	685	ABC membrane transporter [Athalia rosae]	0.496	0.335	0.626	2e-82
307196203	450	Protein white [Harpegnathos saltator]	0.537	0.553	0.587	4e-82
350412731	700	PREDICTED: protein white-like [Bombus im	0.494	0.327	0.614	4e-82
332021334	686	Protein white [Acromyrmex echinatior]	0.494	0.333	0.613	5e-82
112983150	687	ATP dependent transmembrane transporter	0.496	0.334	0.637	7e-82
218775025	687	ABC transporter [Bombyx mori]	0.496	0.334	0.637	7e-82
340720527	700	PREDICTED: protein white-like [Bombus te	0.494	0.327	0.609	2e-81
189473605	687	ABC ATP binding cassette transporter [Bo	0.496	0.334	0.633	2e-81
380018618	695	PREDICTED: LOW QUALITY PROTEIN: protein	0.494	0.329	0.605	2e-79
328714471	666	PREDICTED: protein white-like [Acyrthosi	0.427	0.297	0.681	2e-79

>gi|53828415|dbj|BAD54748.1| ABC membrane transporter [Athalia rosae]

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/241 (62%), Positives = 189/241 (78%), Gaps = 11/241 (4%)

Query: 4   QQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKL 63
           Q  TFF+    LGAACPSNYNPADYFIQ+LAVVP RE +CR  I  VCD F +SE G+K+
Sbjct: 321 QACTFFK---GLGAACPSNYNPADYFIQVLAVVPGREASCRQAINSVCDAFQKSENGVKM 377

Query: 64  A-QATELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTL 122
           A +A  + G+ + ++I+  K+      + A RSPYKA+W  QF+AVLWRSWLSV K+P L
Sbjct: 378 ALEAGTVDGEFE-ESIMDLKL------SSAGRSPYKASWCEQFRAVLWRSWLSVIKEPML 430

Query: 123 MKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELP 182
           +KVR LQTLMVS++IG+IYFGQ LDQDGVMNINGALFI LTNMTFQNVFAVI+VFC+ELP
Sbjct: 431 IKVRFLQTLMVSLLIGVIYFGQKLDQDGVMNINGALFIFLTNMTFQNVFAVINVFCAELP 490

Query: 183 LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIIT 242
           +F+REH+NGMYR DVYF+CKTLAE P+F+A+P++FT ++Y M+ L P    FL    I+T
Sbjct: 491 IFLREHRNGMYRTDVYFICKTLAETPVFIAVPLLFTVIVYPMIGLYPGVDHFLITAGIVT 550

Query: 243 M 243
           +
Sbjct: 551 L 551

Source: Athalia rosae

Species: Athalia rosae

Genus: Athalia

Family: Tenthredinidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196203|gb|EFN77860.1| Protein white [Harpegnathos saltator]

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/264 (58%), Positives = 193/264 (73%), Gaps = 15/264 (5%)

Query: 4   QQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKL 63
           Q  +FF+    LGAACPSNYNPADYF+Q LA+VP RE TCR+ I+  CD F  S+YG+K+
Sbjct: 197 QACSFFK---TLGAACPSNYNPADYFVQTLAIVPGRELTCRHAIKTTCDAFQTSDYGMKI 253

Query: 64  A-QATELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTL 122
           A +A  + GD +    L G     S+G     SPYKA W  QF+AVLWRSWLSV K+P L
Sbjct: 254 ASEAEAVHGDFEDS--LRGLKQPRSSG-----SPYKATWCEQFRAVLWRSWLSVIKEPIL 306

Query: 123 MKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELP 182
           +KVRLLQT+MVS++IG+IYFGQ +DQDGVMNINGALFI LTNMTFQNVFAVI+VFC+ELP
Sbjct: 307 IKVRLLQTIMVSLLIGVIYFGQRMDQDGVMNINGALFIFLTNMTFQNVFAVINVFCAELP 366

Query: 183 LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIIT 242
           +F+REH+NGMYR DVYF+CKTLAE PIFLA+P+IFT ++Y M+ L P    F  AT I+ 
Sbjct: 367 IFLREHRNGMYRTDVYFICKTLAEAPIFLAVPLIFTIIVYPMIGLYPDMKHFFIATGIV- 425

Query: 243 MAKAILGGKMDIFSNGNVANRSPY 266
              A++      F N    ++ P+
Sbjct: 426 ---ALVANVSTSFGNIETVHQPPF 446

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412731|ref|XP_003489743.1| PREDICTED: protein white-like [Bombus impatiens]

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 148/241 (61%), Positives = 185/241 (76%), Gaps = 12/241 (4%)

Query: 4   QQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKL 63
           Q  TFF+    LGAACPSNYNPADYF+Q+LAVVP +E +CR+ I  VCDTF +S++GIK+
Sbjct: 334 QACTFFE---TLGAACPSNYNPADYFVQMLAVVPGQETSCRHAINTVCDTFQKSDHGIKI 390

Query: 64  AQATELRGDLQAKAILGGKMDIFSNGNVA-NRSPYKANWWTQFKAVLWRSWLSVRKDPTL 122
           A        L+A+A+ G   D   +   + NRSPYKA+W  QF AVLWRSWLSV K+P L
Sbjct: 391 A--------LEAEAVSGEFEDSLQDAKYSKNRSPYKASWCEQFHAVLWRSWLSVIKEPIL 442

Query: 123 MKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELP 182
           +KVRLLQT+MVS+++G++YF Q LDQDGVMNINGALFI LTNMTFQNVFAVI+VFC+ELP
Sbjct: 443 IKVRLLQTVMVSLLVGIVYFDQRLDQDGVMNINGALFIFLTNMTFQNVFAVINVFCAELP 502

Query: 183 LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIIT 242
           +F+REH+NGMYR DVYFLCKTLAE PIF+A+P++FT + Y M+ L P    F     I+ 
Sbjct: 503 IFLREHRNGMYRTDVYFLCKTLAEAPIFIAVPLLFTIIAYPMIGLYPGIDHFFITAGIVA 562

Query: 243 M 243
           +
Sbjct: 563 L 563

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021334|gb|EGI61708.1| Protein white [Acromyrmex echinatior]

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 149/243 (61%), Positives = 188/243 (77%), Gaps = 14/243 (5%)

Query: 4   QQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKL 63
           Q  TFF+    LGAACPSN+NPAD+F+Q+LAVVP RE+TC++ IEM CDTF RSEYG  +
Sbjct: 321 QACTFFK---TLGAACPSNHNPADFFVQVLAVVPGREQTCKHAIEMTCDTFRRSEYGANI 377

Query: 64  AQATELRGDLQAKAILGGKMDI---FSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDP 120
                    L+A+A+     D    F++   ++RS YKA+W  QF+AVLWRSWLSV K+P
Sbjct: 378 I--------LKAEAVHDEFEDTLRWFNHSKNSSRSVYKASWCEQFRAVLWRSWLSVIKEP 429

Query: 121 TLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSE 180
            L+KVR LQT+M+S++IG+IYFGQ +DQDGVMNINGALFI LTNMTFQNVFAVI+VFC+E
Sbjct: 430 ILIKVRFLQTIMISLLIGIIYFGQRIDQDGVMNINGALFIFLTNMTFQNVFAVINVFCAE 489

Query: 181 LPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLI 240
           LP+F+REH+NGMYR DVYF+CKTL E PIFLAIP+IFT+++Y M+ L P    F  AT I
Sbjct: 490 LPIFLREHKNGMYRTDVYFICKTLTEAPIFLAIPMIFTAIVYPMIGLYPDVKHFFVATAI 549

Query: 241 ITM 243
           + +
Sbjct: 550 VAL 552

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112983150|ref|NP_001037034.1| ATP dependent transmembrane transporter protein [Bombyx mori] gi|7381618|gb|AAF61569.1|AF229609_1 ATP dependent transmembrane transporter protein [Bombyx mori]

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 148/232 (63%), Positives = 180/232 (77%), Gaps = 2/232 (0%)

Query: 9   FQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATE 68
           FQF   LGAACP+NYNPAD+FIQLLA VP REE  R+TI+ VC  F +SE G ++A   E
Sbjct: 317 FQFFKELGAACPANYNPADHFIQLLAGVPGREEVTRHTIDTVCTAFAKSEIGCRIAAEAE 376

Query: 69  --LRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVR 126
             L  + + +A L       S+   A RSPYKA+W TQF+AVLWRSWLSV K+P L+KVR
Sbjct: 377 NALYNERKIQAGLADAPWAMSSTTRAGRSPYKASWCTQFRAVLWRSWLSVTKEPMLIKVR 436

Query: 127 LLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMR 186
            LQT+MVSI+IG+IYFGQNLDQDGVMNINGA+F+ LTNMTFQN+FAVI+VFCSELP+F+R
Sbjct: 437 FLQTIMVSILIGVIYFGQNLDQDGVMNINGAIFMFLTNMTFQNIFAVINVFCSELPIFIR 496

Query: 187 EHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTAT 238
           EH +GMYR DVYFL KTLAE P+F  IP++FT++ YYM+ LNP   RF  A+
Sbjct: 497 EHHSGMYRADVYFLSKTLAEAPVFATIPLVFTTIAYYMIGLNPDPKRFFIAS 548

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|218775025|dbj|BAH03523.1| ABC transporter [Bombyx mori]

 Score =  310 bits (795), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 148/232 (63%), Positives = 180/232 (77%), Gaps = 2/232 (0%)

Query: 9   FQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATE 68
           FQF   LGAACP+NYNPAD+FIQLLA VP REE  R+TI+ VC  F +SE G ++A   E
Sbjct: 317 FQFFKELGAACPANYNPADHFIQLLAGVPGREEVTRHTIDTVCTAFAKSEIGCRIAAEAE 376

Query: 69  --LRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVR 126
             L  + + +A L       S+   A RSPYKA+W TQF+AVLWRSWLSV K+P L+KVR
Sbjct: 377 NALYNERKIQAGLADAPWAMSSTTRARRSPYKASWCTQFRAVLWRSWLSVTKEPMLIKVR 436

Query: 127 LLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMR 186
            LQT+MVSI+IG+IYFGQNLDQDGVMNINGA+F+ LTNMTFQN+FAVI+VFCSELP+F+R
Sbjct: 437 FLQTIMVSILIGVIYFGQNLDQDGVMNINGAIFMFLTNMTFQNIFAVINVFCSELPIFIR 496

Query: 187 EHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTAT 238
           EH +GMYR DVYFL KTLAE P+F  IP++FT++ YYM+ LNP   RF  A+
Sbjct: 497 EHHSGMYRADVYFLSKTLAEAPVFATIPLVFTTIAYYMIGLNPDPKRFFIAS 548

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720527|ref|XP_003398687.1| PREDICTED: protein white-like [Bombus terrestris]

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/241 (60%), Positives = 184/241 (76%), Gaps = 12/241 (4%)

Query: 4   QQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKL 63
           Q  TFF+    LGAACPSNYNPADYF+Q+LAVVP +E +CR+ I  VCDTF +S++GIK+
Sbjct: 334 QACTFFE---TLGAACPSNYNPADYFVQMLAVVPGQETSCRHAINTVCDTFQKSDHGIKI 390

Query: 64  AQATELRGDLQAKAILGGKMDIFSNGNVA-NRSPYKANWWTQFKAVLWRSWLSVRKDPTL 122
           A        L+A+A+ G   D   +   + NRSPYKA+W  QF AVLWRSWLSV K+P L
Sbjct: 391 A--------LEAEAVNGEFEDSLQDAKYSKNRSPYKASWCEQFHAVLWRSWLSVIKEPIL 442

Query: 123 MKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELP 182
           +KVRLLQT+MVS+++G++YF Q LDQDG MNINGALFI LTNMTFQNVFAVI+VFC+ELP
Sbjct: 443 IKVRLLQTVMVSLLVGIVYFDQRLDQDGAMNINGALFIFLTNMTFQNVFAVINVFCAELP 502

Query: 183 LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIIT 242
           +F+REH+NGMYR DVYFLCKTLAE PIF+A+P++FT + Y M+ L P    F     I+ 
Sbjct: 503 IFLREHRNGMYRTDVYFLCKTLAEAPIFIAVPLLFTIIAYPMIGLYPGIDHFFITAGIVA 562

Query: 243 M 243
           +
Sbjct: 563 L 563

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189473605|gb|ACD99701.1| ABC ATP binding cassette transporter [Bombyx mandarina]

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/232 (63%), Positives = 180/232 (77%), Gaps = 2/232 (0%)

Query: 9   FQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATE 68
           FQF   LGAACP+NYNPAD+FIQLLA VP REE  R+TI+ VC  F +SE G ++A   E
Sbjct: 317 FQFFKELGAACPANYNPADHFIQLLAGVPGREEVTRHTIDTVCTAFAKSEIGCRIAAEAE 376

Query: 69  --LRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVR 126
             L  + + +A L       S+   A RSPYKA+W TQF+AVLWRSWLSV K+P L+KVR
Sbjct: 377 NALYNERKIQAGLADAPWAMSSTTRARRSPYKASWCTQFRAVLWRSWLSVTKEPMLIKVR 436

Query: 127 LLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMR 186
            LQT+MVSI+IG+IYFGQNLDQDGVMNINGA+F+ LTNMTFQN+FAVI+VFCS+LP+F+R
Sbjct: 437 FLQTIMVSILIGVIYFGQNLDQDGVMNINGAIFMFLTNMTFQNIFAVINVFCSDLPIFIR 496

Query: 187 EHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTAT 238
           EH +GMYR DVYFL KTLAE P+F  IP++FT++ YYM+ LNP   RF  A+
Sbjct: 497 EHHSGMYRADVYFLSKTLAEAPVFATIPLVFTTIAYYMIGLNPDPKRFFIAS 548

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018618|ref|XP_003693224.1| PREDICTED: LOW QUALITY PROTEIN: protein white-like [Apis florea]

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/241 (60%), Positives = 183/241 (75%), Gaps = 12/241 (4%)

Query: 4   QQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKL 63
           Q  TFF+    LGAACPSNYNPADYF+Q+LA+VP +E +CR+ I  VCD F +SE+GIK+
Sbjct: 329 QACTFFE---TLGAACPSNYNPADYFVQMLAIVPGQETSCRHAINTVCDAFQKSEHGIKI 385

Query: 64  AQATELRGDLQAKAILGGKMDIFSNGNVA-NRSPYKANWWTQFKAVLWRSWLSVRKDPTL 122
           A        L+A+AI     D   +   + NRS YKA+W  QF+AVLWRSWLSV K+P L
Sbjct: 386 A--------LEAEAINNEFDDSMRDSKYSKNRSLYKASWCEQFRAVLWRSWLSVIKEPIL 437

Query: 123 MKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELP 182
           +KVRLLQT+MVS+++G++YF Q LDQDGVMNINGALFI LTNMTFQNVFAVI+VFC+ELP
Sbjct: 438 IKVRLLQTVMVSLLVGIVYFNQRLDQDGVMNINGALFIFLTNMTFQNVFAVINVFCAELP 497

Query: 183 LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIIT 242
           +F+REH+NGMYR DVYFLCKTLAE PIF+A+P++FT + Y M+ L P    F     I+ 
Sbjct: 498 IFLREHRNGMYRTDVYFLCKTLAEAPIFIAVPLLFTIIAYPMIGLYPGIDHFFITAGIVA 557

Query: 243 M 243
           +
Sbjct: 558 L 558

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714471|ref|XP_001943103.2| PREDICTED: protein white-like [Acyrthosiphon pisum]

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/201 (68%), Positives = 168/201 (83%)

Query: 256 SNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNL 315
           SNG     SPYKA+W  QF AV WRSWLS++K+P L K+RL+QT++V+ +I  I++ Q+L
Sbjct: 377 SNGLENVSSPYKASWTEQFSAVFWRSWLSIKKEPALTKIRLIQTMLVAALISFIFYNQHL 436

Query: 316 DQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAE 375
           DQDGVMNINGALF+C++NMTFQNV AVI+VFCSELP+FMREH NGMYR DVYFL KTLAE
Sbjct: 437 DQDGVMNINGALFMCISNMTFQNVLAVINVFCSELPVFMREHHNGMYRTDVYFLSKTLAE 496

Query: 376 VPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVAL 435
           VPIFL +P++FTS+MYY+V LNP F+ FL A L IT+VS VA SFGY +SC S S+SVAL
Sbjct: 497 VPIFLVLPILFTSIMYYVVGLNPKFTHFLVAALFITLVSLVAVSFGYFVSCASGSISVAL 556

Query: 436 SIGPPVIIPFLLFGGFFLNAG 456
           S+GP ++IPFLLFGG+FLN G
Sbjct: 557 SVGPTIVIPFLLFGGYFLNVG 577

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
FB|FBgn0003996	687	w "white" [Drosophila melanoga	0.477	0.321	0.516	2.8e-57
WB|WBGene00015479	598	wht-1 [Caenorhabditis elegans	0.524	0.406	0.352	1.4e-38
UNIPROTKB|Q11180	598	wht-1 "ABC transporter ATP-bin	0.524	0.406	0.352	1.4e-38
UNIPROTKB|E3LWM9	654	Cre-wht-1 "CRE-WHT-1 protein"	0.522	0.370	0.347	2.2e-37
UNIPROTKB|A8XZE0	627	wht-1 "Protein CBR-WHT-1" [Cae	0.524	0.387	0.345	2.8e-36
WB|WBGene00021535	684	wht-7 [Caenorhabditis elegans	0.518	0.350	0.345	1.2e-33
WB|WBGene00017179	567	wht-4 [Caenorhabditis elegans	0.464	0.379	0.315	6.1e-29
FB|FBgn0003515	666	st "scarlet" [Drosophila melan	0.470	0.327	0.293	1.5e-21
WB|WBGene00012925	619	wht-8 [Caenorhabditis elegans	0.278	0.208	0.286	1.5e-21
WB|WBGene00007060	613	wht-6 [Caenorhabditis elegans	0.384	0.290	0.256	8.6e-21

FB|FBgn0003996 w "white" [Drosophila melanogaster (taxid:7227)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 122/236 (51%), Positives = 162/236 (68%)

Query:     8 FFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQAT 67
             FF +   +GA CP+NYNPAD+++Q+LAVVP RE   R+ I  +CD F  S    K+A+  
Sbjct:   331 FFSY---VGAQCPTNYNPADFYVQVLAVVPGREIESRDRIAKICDNFAIS----KVARDM 383

Query:    68 ELRGDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRL 127
             E    L A   L   ++   NG       YKA W+ QF+AVLWRSWLSV K+P L+KVRL
Sbjct:   384 E---QLLATKNLEKPLEQPENGYT-----YKATWFMQFRAVLWRSWLSVLKEPLLVKVRL 435

Query:   128 LQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMRE 187
             +QT MV+I+IGLI+ GQ L Q GVMNINGA+F+ LTNMTFQNVFA I+VF SELP+FMRE
Sbjct:   436 IQTTMVAILIGLIFLGQQLTQVGVMNINGAIFLFLTNMTFQNVFATINVFTSELPVFMRE 495

Query:   188 HQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITM 243
              ++ +YR D YFL KT+AE+P+FL +P++FT++ Y M+ L      F     ++T+
Sbjct:   496 ARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTL 551

GO:0006856 "eye pigment precursor transport" evidence=NAS;TAS

GO:0006727 "ommochrome biosynthetic process" evidence=IMP

GO:0042441 "eye pigment metabolic process" evidence=TAS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0008049 "male courtship behavior" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0048072 "compound eye pigmentation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0070731 "cGMP transport" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0042401 "cellular biogenic amine biosynthetic process" evidence=IMP

WB|WBGene00015479 wht-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 413 (150.4 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 90/255 (35%), Positives = 145/255 (56%)

Query:    14 RLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYG---IKLAQATELR 70
             + G  CP+ YNPAD+ I+ LAV+ S   T   TI  +   F  ++ G   + +  A +LR
Sbjct:   230 KCGYPCPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLSTDLGQSVLAIGNANKLR 289

Query:    71 GDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQT 130
                 A  + G   D            Y A++WTQF A+ WRSWL+V +DP L+ VRLLQ 
Sbjct:   290 A---ASFVTGS--DTSEKTKTFFNQDYNASFWTQFLALFWRSWLTVIRDPNLLSVRLLQI 344

Query:   131 LMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQN 190
             L+ + + G+++F   +    +++ING +F  + NM F   F  + V  +ELP+ +RE+ N
Sbjct:   345 LITAFITGIVFFQTPVTPATIISINGIMFNHIRNMNFMLQFPNVPVITAELPIVLRENAN 404

Query:   191 GMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTA---TLIIT-MAKA 246
             G+YR   YFL K +AE+P ++ +P+++ +++Y+M  L P F  +  A   T++IT +A +
Sbjct:   405 GVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYCFASLVTILITNVAIS 464

Query:   247 ILGGKMDIFSNGNVA 261
             I      IF+N +VA
Sbjct:   465 ISYAVATIFANTDVA 479

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q11180 wht-1 "ABC transporter ATP-binding protein/permease wht-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 413 (150.4 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 90/255 (35%), Positives = 145/255 (56%)

Query:    14 RLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYG---IKLAQATELR 70
             + G  CP+ YNPAD+ I+ LAV+ S   T   TI  +   F  ++ G   + +  A +LR
Sbjct:   230 KCGYPCPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLSTDLGQSVLAIGNANKLR 289

Query:    71 GDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQT 130
                 A  + G   D            Y A++WTQF A+ WRSWL+V +DP L+ VRLLQ 
Sbjct:   290 A---ASFVTGS--DTSEKTKTFFNQDYNASFWTQFLALFWRSWLTVIRDPNLLSVRLLQI 344

Query:   131 LMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQN 190
             L+ + + G+++F   +    +++ING +F  + NM F   F  + V  +ELP+ +RE+ N
Sbjct:   345 LITAFITGIVFFQTPVTPATIISINGIMFNHIRNMNFMLQFPNVPVITAELPIVLRENAN 404

Query:   191 GMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTA---TLIIT-MAKA 246
             G+YR   YFL K +AE+P ++ +P+++ +++Y+M  L P F  +  A   T++IT +A +
Sbjct:   405 GVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYCFASLVTILITNVAIS 464

Query:   247 ILGGKMDIFSNGNVA 261
             I      IF+N +VA
Sbjct:   465 ISYAVATIFANTDVA 479

GO:0016246 "RNA interference" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E3LWM9 Cre-wht-1 "CRE-WHT-1 protein" [Caenorhabditis remanei (taxid:31234)]

 Score = 406 (148.0 bits), Expect = 2.2e-37, P = 2.2e-37
 Identities = 89/256 (34%), Positives = 148/256 (57%)

Query:    14 RLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYG---IKLAQATELR 70
             R G  CP+ YNPAD+ I+ LAV+ S   T   TI  +   F  ++ G   + +  A +LR
Sbjct:   286 RCGFPCPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLSTDLGQSVLAIGNANKLR 345

Query:    71 G-DLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQ 129
                    +    K   F N +      Y A++WTQF+A+ WRS+L+V +DP L+ VRLLQ
Sbjct:   346 AASFATSSETSEKTKTFFNQD------YNASFWTQFRALFWRSYLTVIRDPNLLSVRLLQ 399

Query:   130 TLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQ 189
              ++ +++ GL++F   +    ++++NG +F  + NM F   F  + V  +ELP+ +RE+ 
Sbjct:   400 IIITALITGLVFFQTPVTPATIISVNGIMFNHIRNMNFMLQFPNVPVITAELPIVLRENA 459

Query:   190 NGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTA---TLIIT-MAK 245
             NG+YR   YFL K +AE+P ++ +PV++ +++Y++  L P F  +  A   T++IT +A 
Sbjct:   460 NGVYRTSAYFLAKNIAELPQYIILPVLYNTIVYWLSGLYPNFWNYCFASLVTILITNVAI 519

Query:   246 AILGGKMDIFSNGNVA 261
             +I      IF+N +VA
Sbjct:   520 SISYAVATIFANTDVA 535

GO:0016246 "RNA interference" evidence=ISS

UNIPROTKB|A8XZE0 wht-1 "Protein CBR-WHT-1" [Caenorhabditis briggsae (taxid:6238)]

 Score = 395 (144.1 bits), Expect = 2.8e-36, P = 2.8e-36
 Identities = 88/255 (34%), Positives = 140/255 (54%)

Query:    14 RLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYG---IKLAQATELR 70
             + G  CPS YNPAD+ I+ LAV+ S   T   TI  +   F  ++ G   + +  A +LR
Sbjct:   259 KCGFPCPSYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLSTDLGQSVLAIGNANKLR 318

Query:    71 GDLQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQT 130
                   A      D            Y A+++ QFK + WRSWL+V +DP L+ VRLLQ 
Sbjct:   319 A-----ASFATSSDTSEKTKTFFNQDYNASFFIQFKVLFWRSWLTVIRDPNLLSVRLLQI 373

Query:   131 LMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQN 190
             ++ +++ GL++F   +    +++ING +F  + NM F   F  + V  +ELP+  RE+ N
Sbjct:   374 IITALITGLVFFQTPITPATIISINGIMFNHIRNMNFMLQFPNVPVITAELPIVFRENAN 433

Query:   191 GMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTA---TLIIT-MAKA 246
             G+YR   YFL K  AE+P ++ +P+++ +++Y+   L P F  F  A   T++IT +A +
Sbjct:   434 GVYRTSAYFLAKNFAELPQYIILPILYNTIVYWFSGLFPNFWNFCFASLVTILITNVAIS 493

Query:   247 ILGGKMDIFSNGNVA 261
             I      IF+N +VA
Sbjct:   494 ISYAVATIFANTDVA 508

GO:0016246 "RNA interference" evidence=ISS

WB|WBGene00021535 wht-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 373 (136.4 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 86/249 (34%), Positives = 145/249 (58%)

Query:    20 PSNYNPADYFIQLLAVVPSREETCR-NTIEMVCDTFDRSEYGIKLAQATELRG-DLQAKA 77
             P N+NP+D+++  +++    EET + N I  +C TF  SE G  + + +  R  D + +A
Sbjct:   325 PMNFNPSDHYLATMSIRDQAEETLKKNQIGKICTTFKYSELGKSVFKESSGREVDERDRA 384

Query:    78 ILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMI 137
                     ++      R  + A+++ Q +A+ WR+  +V ++PTL+KV+  Q+++++I+ 
Sbjct:   385 FSEDWRRRYAT--TFGRPRFGASFFQQIRALTWRASKTVLREPTLLKVQTFQSIIIAILT 442

Query:   138 GLIYFGQN-LDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVD 196
             GL+Y   + +DQ  +MNING+L+  ++NM F   F+V+  FC E+  F RE  + +YRV 
Sbjct:   443 GLVYTNNSPVDQQKIMNINGSLYQMISNMAFMFQFSVVHHFCLEMNTFYRETSSRLYRVS 502

Query:   197 VYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAK--AILGGKMD- 253
              YF+ K LAE+P ++   VIFTS++Y+M  L PI   FL   L+  + +  AI  G M  
Sbjct:   503 AYFISKNLAELPSYIVSAVIFTSILYWMSGLVPIIDSFLIYMLVGILVQNIAISIGYMFS 562

Query:   254 -IFSNGNVA 261
              IF   N+A
Sbjct:   563 CIFGTVNLA 571

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00017179 wht-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 327 (120.2 bits), Expect = 6.1e-29, P = 6.1e-29
 Identities = 71/225 (31%), Positives = 125/225 (55%)

Query:    20 PSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAIL 79
             P +YNPAD+ +  +++ P  E+     IE +   +  S+ G ++ + T    D       
Sbjct:   211 PESYNPADFVMSEISISPETEQEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVDE-----F 265

Query:    80 GGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGL 139
             GG  D   +G     S Y + + TQF+ +L RS  +  +DP L++VR  Q L  +I++G+
Sbjct:   266 GGYGDDEDDGE----SRYNSTFGTQFEILLKRSLRTTFRDPLLLRVRFAQILATAILVGI 321

Query:   140 IYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYF 199
             + +   L    + N+ G ++ C  +MTF   F  ++V  SELP+F+REH++ +Y V+ YF
Sbjct:   322 VNWRVELKGPTIQNLEGVMYNCARDMTFLFYFPSVNVITSELPVFLREHKSNIYSVEAYF 381

Query:   200 LCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLI-ITM 243
             L K+LAE+P +  +P+I+ +++Y+M  L    + FL    + IT+
Sbjct:   382 LAKSLAELPQYTILPMIYGTIIYWMAGLVASVTSFLVFVFVCITL 426

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0003515 st "scarlet" [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 67/228 (29%), Positives = 117/228 (51%)

Query:    16 GAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQA 75
             G  CP  YNPAD+ I +LA  P  E+  + + + +CD F  S      A+  ++  +L+ 
Sbjct:   311 GYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSS----AAKQRDMLVNLEI 366

Query:    76 KAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSI 135
                  G    F     + R      W+ +F  V  R+ L++ +DPT+  +R +Q + ++ 
Sbjct:   367 HMAQSGNFP-FDTEVESFRG---VAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAF 422

Query:   136 MIGLIYFGQNL-DQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYR 194
             +IG  + G     Q GV  + GALFI ++  T+  +++V+++F    PLFMRE ++G+Y 
Sbjct:   423 IIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYS 482

Query:   195 VDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRF-LTATLII 241
                Y+    LA +P  +  P+IF  + Y++  L   F  F +TA  ++
Sbjct:   483 TGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVV 530

GO:0006727 "ommochrome biosynthetic process" evidence=NAS;IMP

GO:0006856 "eye pigment precursor transport" evidence=TAS

GO:0006726 "eye pigment biosynthetic process" evidence=NAS

GO:0005395 "eye pigment precursor transporter activity" evidence=NAS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

WB|WBGene00012925 wht-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 202 (76.2 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 37/129 (28%), Positives = 72/129 (55%)

Query:   107 AVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMT 166
             A+ +R  L   ++P +MK +L+Q L + + IG +++G   DQDG+ +  GALF  ++ +T
Sbjct:   345 ALFYRYMLDNIRNPAIMKAKLIQKLFMGLFIGTLFYGLETDQDGLASYKGALFYYISELT 404

Query:   167 FQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVH 226
             +  +F + +   ++ P  +RE+ + +Y +  Y++ K  + +PIF    +I     Y++V 
Sbjct:   405 YSTIFGIQAFMPADYPPLVREYDDRIYPISAYYIAKICSFLPIFTVDGIILVVSSYFLVG 464

Query:   227 LNPIFSRFL 235
                 F  FL
Sbjct:   465 FPSDFGVFL 473

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00007060 wht-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 232 (86.7 bits), Expect = 8.6e-21, Sum P(2) = 8.6e-21
 Identities = 46/179 (25%), Positives = 91/179 (50%)

Query:   266 YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNING 325
             ++AN +TQ  A+  R  + V + P L   +++Q ++  + IGL+Y     D  G+ NING
Sbjct:   333 HRANVFTQIFALSTRCGIDVWRAPQLTLAKVIQKILFGLFIGLLYLRTPYDARGIHNING 392

Query:   326 ALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVI 385
             ALF       +   +A++    +E PL  RE+ +G+Y +  Y+  + ++ +P+F    +I
Sbjct:   393 ALFFLAGEYIYSTAYAIMFFLNNEFPLVAREYHDGLYNLWTYYFARCISLIPLFSTDGLI 452

Query:   386 FTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYXXXXXX-XXXXXXXXXGPPVII 443
                ++Y+++ LN    + + A++I  + S  A++FG                  PP+++
Sbjct:   453 LLFIVYWLIGLNTSVMQVIVASIITVLASQAASAFGIAMSCIFPTAQMTAVMASPPLVL 511

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	463
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	9e-91
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	4e-80
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	5e-28
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	6e-17
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-16
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	6e-16
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	2e-13
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	7e-13
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	7e-12
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	6e-11
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-10
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	3e-10
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-10
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	5e-06

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  287 bits (737), Expect = 9e-91
 Identities = 119/197 (60%), Positives = 155/197 (78%)

Query: 260 VANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDG 319
                 Y A+WWTQF A+L RSWLSV +DP L+KVRL+QT+M +I+IGLIY GQ L Q G
Sbjct: 329 NMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKG 388

Query: 320 VMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIF 379
           V NINGALF+ LTNMTFQNVF VI+VF +ELP+F+RE ++G+YRV  YFL KT+AE+P+F
Sbjct: 389 VQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLF 448

Query: 380 LAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGP 439
           + +P +FTS+ Y+M+ L    + FLT   ++T+V+ VATSFGYLISC  SS S+AL++GP
Sbjct: 449 IILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGP 508

Query: 440 PVIIPFLLFGGFFLNAG 456
           P +IPFLLFGGFF+N+ 
Sbjct: 509 PFVIPFLLFGGFFINSD 525

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  259 bits (665), Expect = 4e-80
 Identities = 114/229 (49%), Positives = 154/229 (67%), Gaps = 8/229 (3%)

Query: 15  LGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQ 74
           LG  CP NYNPAD+++Q+LAV+P  E   R  IE +CD+F  S+ G  +   T L     
Sbjct: 261 LGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKA 320

Query: 75  AKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVS 134
              +         +        Y A+WWTQF A+L RSWLSV +DP L+KVRL+QT+M +
Sbjct: 321 GGLV--------KDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTA 372

Query: 135 IMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYR 194
           I+IGLIY GQ L Q GV NINGALF+ LTNMTFQNVF VI+VF +ELP+F+RE ++G+YR
Sbjct: 373 ILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432

Query: 195 VDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITM 243
           V  YFL KT+AE+P+F+ +P +FTS+ Y+M+ L    + FLT   ++T+
Sbjct: 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTL 481

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score =  110 bits (276), Expect = 5e-28
 Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 4/191 (2%)

Query: 272 TQFKAVLWRSWLSVRKDPTL-MKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFIC 330
           TQ KA+L R +L   +DP+L +  RL+Q L+++++ G + FG      G +N  G LF  
Sbjct: 1   TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTV-FGNLDTSLGGLNRPGLLFFS 59

Query: 331 LTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVM 390
           +    F ++  +  VF  E  +  RE  + +Y    Y L K L E+PI L   +IF  ++
Sbjct: 60  ILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIV 119

Query: 391 YYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGG 450
           Y+MV L    SRF    L++ + +  A+  G  I+ ++ S   A  IGP +++P LL  G
Sbjct: 120 YFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSG 177

Query: 451 FFLNAGLMGVA 461
           FF+    M   
Sbjct: 178 FFIPVDSMPGW 188

Length = 210

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 78.8 bits (195), Expect = 6e-17
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 4/142 (2%)

Query: 103 TQFKAVLWRSWLSVRKDPTL-MKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFIC 161
           TQ KA+L R +L   +DP+L +  RL+Q L+++++ G + FG      G +N  G LF  
Sbjct: 1   TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTV-FGNLDTSLGGLNRPGLLFFS 59

Query: 162 LTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVM 221
           +    F ++  +  VF  E  +  RE  + +Y    Y L K L E+PI L   +IF  ++
Sbjct: 60  ILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIV 119

Query: 222 YYMVHLNPIFSRFLTATLIITM 243
           Y+MV L    SRF    L++ +
Sbjct: 120 YFMVGLPV--SRFFLFLLVLLL 139

Length = 210

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 80.9 bits (200), Expect = 5e-16
 Identities = 34/201 (16%), Positives = 91/201 (45%), Gaps = 1/201 (0%)

Query: 259 NVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQD 318
                SPY  ++  Q K  L R++L ++ +P+     +   +++++++  +++    +  
Sbjct: 389 RTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS 448

Query: 319 GVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPI 378
              +  GALF  +    F ++  + S++    P+  +  +  +Y      +   ++E+P 
Sbjct: 449 DFYSRGGALFFAILFNAFSSLLEIASMY-EARPIVEKHRKYALYHPSADAIASIISEIPF 507

Query: 379 FLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIG 438
            +   V+F  ++Y+MV+      RF    LI+ + +   +     I  ++ ++S A++  
Sbjct: 508 KIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPA 567

Query: 439 PPVIIPFLLFGGFFLNAGLMG 459
             +++   ++ GF +    M 
Sbjct: 568 AILLLALSIYTGFAIPRPSML 588

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 79.9 bits (197), Expect = 6e-16
 Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 3/187 (1%)

Query: 268 ANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGAL 327
           + W+ QF  +L RS L  RK  +   +R+ Q +  +++ GL+++  + D   V +  G L
Sbjct: 386 STWFNQFSILLQRS-LKERKHESFNTLRVFQVIAAALLAGLMWW--HSDFRDVQDRLGLL 442

Query: 328 FICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFT 387
           F           F  + VF  E  +F++E  +GMY +  YF+ + + ++P+ L +P IF 
Sbjct: 443 FFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFL 502

Query: 388 SVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLL 447
           +V Y+M  L P    FL   L++     V+   G  +         A +I    ++ F+L
Sbjct: 503 TVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVL 562

Query: 448 FGGFFLN 454
            GGF+++
Sbjct: 563 TGGFYVH 569

Length = 659

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 3/143 (2%)

Query: 99  ANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGAL 158
           + W+ QF  +L RS L  RK  +   +R+ Q +  +++ GL+++  + D   V +  G L
Sbjct: 386 STWFNQFSILLQRS-LKERKHESFNTLRVFQVIAAALLAGLMWW--HSDFRDVQDRLGLL 442

Query: 159 FICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFT 218
           F           F  + VF  E  +F++E  +GMY +  YF+ + + ++P+ L +P IF 
Sbjct: 443 FFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFL 502

Query: 219 SVMYYMVHLNPIFSRFLTATLII 241
           +V Y+M  L P    FL   L++
Sbjct: 503 TVTYWMAGLKPELGAFLLTLLVL 525

Length = 659

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 71.0 bits (174), Expect = 7e-13
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 3/191 (1%)

Query: 266  YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYF--GQNLDQDGVMN- 322
            Y  + W QFK+ LW+ W +  + P    VR   TL  ++M+G I++  G        +  
Sbjct: 1187 YSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTM 1246

Query: 323  INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAI 382
            + GA++  +  +   N   V  +   E  +F RE   GMY    Y + + + E+P  L  
Sbjct: 1247 VIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQ 1306

Query: 383  PVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVI 442
               +T ++Y MV      ++F     I        T +G +   ++ +  VA        
Sbjct: 1307 TTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFY 1366

Query: 443  IPFLLFGGFFL 453
              F LF GFF+
Sbjct: 1367 GLFNLFSGFFI 1377

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 28/161 (17%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 90  NVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQD 149
                SPY  ++  Q K  L R++L ++ +P+     +   +++++++  +++    +  
Sbjct: 389 RTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS 448

Query: 150 GVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPI 209
              +  GALF  +    F ++  + S++    P+  +  +  +Y      +   ++E+P 
Sbjct: 449 DFYSRGGALFFAILFNAFSSLLEIASMY-EARPIVEKHRKYALYHPSADAIASIISEIPF 507

Query: 210 FLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAILGG 250
            +   V+F  ++Y+MV+      RF    LI+ +    +  
Sbjct: 508 KIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSH 548

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 64.9 bits (158), Expect = 6e-11
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 97   YKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYF--GQNLDQDGVMN- 153
            Y  + W QFK+ LW+ W +  + P    VR   TL  ++M+G I++  G        +  
Sbjct: 1187 YSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTM 1246

Query: 154  INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAI 213
            + GA++  +  +   N   V  +   E  +F RE   GMY    Y + + + E+P  L  
Sbjct: 1247 VIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQ 1306

Query: 214  PVIFTSVMYYMV 225
               +T ++Y MV
Sbjct: 1307 TTYYTLIVYAMV 1318

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 7/196 (3%)

Query: 263  RSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN 322
             S Y A+ W QFK VLWR++    + P  +  +   T+  ++ IG  +F       G+ N
Sbjct: 1069 LSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQN 1128

Query: 323  INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAI 382
               A+F+            +           +RE  +  +    +   +   E+P  L  
Sbjct: 1129 QMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVA 1188

Query: 383  PVIFTSVMYYMV-------HLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVAL 435
              IF  + YY V           +  R +   L+ TM     ++ G ++   + +   A 
Sbjct: 1189 GTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248

Query: 436  SIGPPVIIPFLLFGGF 451
             +   +    L F G 
Sbjct: 1249 VLASLLFTMCLSFCGV 1264

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 48/238 (20%), Positives = 84/238 (35%), Gaps = 32/238 (13%)

Query: 19   CPSNYNPADYFIQLLAVVPSRE------ETCRNTIEMVCDTFDRSEYGIKLAQATELRGD 72
            CP + NPA++ ++++   P         E  RN+          SEY     +   L  +
Sbjct: 1007 CPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNS----------SEYQAVKNELDRLEAE 1056

Query: 73   LQAKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLM 132
            L              + +    S Y A+ W QFK VLWR++    + P  +  +   T+ 
Sbjct: 1057 LSKAE---------DDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIF 1107

Query: 133  VSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGM 192
             ++ IG  +F       G+ N   A+F+            +           +RE  +  
Sbjct: 1108 AALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRT 1167

Query: 193  YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMV-------HLNPIFSRFLTATLIITM 243
            +    +   +   E+P  L    IF  + YY V           +  R +   L+ TM
Sbjct: 1168 FSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTM 1225

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 43/187 (22%), Positives = 89/187 (47%), Gaps = 6/187 (3%)

Query: 274 FKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNL----DQDGVMNINGALFI 329
            KA   + WL ++++  +   + +Q ++V+ +   ++    +    ++DG + I   LF 
Sbjct: 518 LKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFS 577

Query: 330 CLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSV 389
            + NM   N FA +++    LP+F ++     +    + L   L  +PI +   V++  +
Sbjct: 578 MIINMF--NGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVI 635

Query: 390 MYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFG 449
            YY +   P  SRF    L++ ++  +A     LI+ +  ++ +A + G  V++   L G
Sbjct: 636 TYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLG 695

Query: 450 GFFLNAG 456
           GF L  G
Sbjct: 696 GFILPKG 702

Length = 1470

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 32/150 (21%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 105 FKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNL----DQDGVMNINGALFI 160
            KA   + WL ++++  +   + +Q ++V+ +   ++    +    ++DG + I   LF 
Sbjct: 518 LKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFS 577

Query: 161 CLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSV 220
            + NM   N FA +++    LP+F ++     +    + L   L  +PI +   V++  +
Sbjct: 578 MIINMF--NGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVI 635

Query: 221 MYYMVHLNPIFSRFLTATLIITMAKAILGG 250
            YY +   P  SRF    L++ + + +  G
Sbjct: 636 TYYSIGFAPEASRFFKQLLLVFLIQQMAAG 665

Length = 1470

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	463
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065|consensus	1391		100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
KOG0061|consensus	613		100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065|consensus	1391		99.97
KOG0061|consensus	613		99.89
PLN03211	659	ABC transporter G-25; Provisional	99.87
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.85
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.77
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.47
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.45
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.41
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.28
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.27
PRK15066	257	inner membrane transport permease; Provisional	99.1
TIGR01248	152	drrC daunorubicin resistance protein C. The model	98.79
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	98.67
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.21
COG0842	286	ABC-type multidrug transport system, permease comp	98.13
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	98.01
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	97.81
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	97.58
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	97.57
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	97.5
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	97.31
COG4587	268	ABC-type uncharacterized transport system, permeas	97.02
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	96.88
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	96.7
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	96.68
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	96.17
COG2386	221	CcmB ABC-type transport system involved in cytochr	95.97
COG1277	278	NosY ABC-type transport system involved in multi-c	95.88
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	95.48
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	94.1
PRK15066	257	inner membrane transport permease; Provisional	93.06
PF06182	229	ABC2_membrane_6: ABC-2 family transporter protein;	92.4
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	91.95
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	91.94
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	91.72
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	90.32
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	88.69
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	85.73
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	85.39
COG3559	536	TnrB3 Putative exporter of polyketide antibiotics	82.23
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	81.45

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=4.4e-55  Score=488.56  Aligned_cols=450  Identities=20%  Similarity=0.361  Sum_probs=384.9

Q ss_pred             CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCCCchh----hhH---HHHHHHHHHhhcChHHHHHHHhhhhhhhhH
Q psy1567           2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREE----TCR---NTIEMVCDTFDRSEYGIKLAQATELRGDLQ   74 (463)
Q Consensus         2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~~~~----~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~   74 (463)
                      +|+.+++++||+++||+||+++|||||++|+++.+...+.    ..+   .+++++++.|++++.+++..++.+.+.+..
T Consensus       419 ~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  498 (1470)
T PLN03140        419 QGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKS  498 (1470)
T ss_pred             eCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhh
Confidence            6899999999999999999999999999999885432111    111   457899999999988877665544321110


Q ss_pred             HHHhhCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCc---ccc
Q psy1567          75 AKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQ---DGV  151 (463)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~---~~~  151 (463)
                             ..    .......+++..+++.|++.|++|.++..+||+..+..|+++.+++|+++|++|++++.++   .+.
T Consensus       499 -------~~----~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~  567 (1470)
T PLN03140        499 -------QS----HKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDG  567 (1470)
T ss_pred             -------hc----ccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhH
Confidence                   00    0112234568899999999999999999999999999999999999999999999997553   345


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchh
Q psy1567         152 MNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF  231 (463)
Q Consensus       152 ~~~~g~~f~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~  231 (463)
                      +.+.|.+||.+++.++.++ ..++.++.||++|.||+.+++|++++|++|++++|+|+.++.+++|.+|+|||+|+++++
T Consensus       568 ~~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~  646 (1470)
T PLN03140        568 ALYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEA  646 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCch
Confidence            6788999999998888875 568899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHh---------------------------------------------------------------
Q psy1567         232 SRFLTATLIITMAKAIL---------------------------------------------------------------  248 (463)
Q Consensus       232 ~~f~~f~l~l~l~~~i~---------------------------------------------------------------  248 (463)
                      ++||.|++++++++.++                                                               
T Consensus       647 ~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~  726 (1470)
T PLN03140        647 SRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAV  726 (1470)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHH
Confidence            99999999987754100                                                               


Q ss_pred             -------------c------C-----------------------------------------------------------
Q psy1567         249 -------------G------G-----------------------------------------------------------  250 (463)
Q Consensus       249 -------------~------~-----------------------------------------------------------  250 (463)
                                   .      |                                                           
T Consensus       727 NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~  806 (1470)
T PLN03140        727 NEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEM  806 (1470)
T ss_pred             HhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhh
Confidence                         0      0                                                           


Q ss_pred             -----------------c----------------------------------c-------c-cccC--------------
Q psy1567         251 -----------------K----------------------------------M-------D-IFSN--------------  257 (463)
Q Consensus       251 -----------------~----------------------------------~-------~-~~~~--------------  257 (463)
                                       .                                  +       + .|++              
T Consensus       807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~  886 (1470)
T PLN03140        807 EGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQ  886 (1470)
T ss_pred             hccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCcccccc
Confidence                             0                                  0       0 0000              


Q ss_pred             ----CC--C-----------------------------------------------------------------------
Q psy1567         258 ----GN--V-----------------------------------------------------------------------  260 (463)
Q Consensus       258 ----~~--~-----------------------------------------------------------------------  260 (463)
                          ++  .                                                                       
T Consensus       887 ~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~  966 (1470)
T PLN03140        887 GVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSP  966 (1470)
T ss_pred             ccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCC
Confidence                00  0                                                                       


Q ss_pred             --------------------------------------------C------C----------------------------
Q psy1567         261 --------------------------------------------A------N----------------------------  262 (463)
Q Consensus       261 --------------------------------------------~------~----------------------------  262 (463)
                                                                  .      +                            
T Consensus       967 ~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP 1046 (1470)
T PLN03140        967 QVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046 (1470)
T ss_pred             CCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence                                                        0      0                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy1567         263 --------------------------------------------------------------------------------  262 (463)
Q Consensus       263 --------------------------------------------------------------------------------  262 (463)
                                                                                                      
T Consensus      1047 TsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140       1047 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------CCCCCCCHHHHHHHHHHHhhhhh
Q psy1567         263 ---------------------------------------------------------RSPYKANWWTQFKAVLWRSWLSV  285 (463)
Q Consensus       263 ---------------------------------------------------------~~~~~~s~~~q~~~l~~R~~~~~  285 (463)
                                                                               ++++++|++.|++++++|+++..
T Consensus      1127 ~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~ 1206 (1470)
T PLN03140       1127 EKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTY 1206 (1470)
T ss_pred             CCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHH
Confidence                                                                     01246789999999999999999


Q ss_pred             ccChhhHHHHHHHHHHHHHHHHHHhcCCCCCh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhCCCC
Q psy1567         286 RKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQ---DGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMY  362 (463)
Q Consensus       286 ~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~---~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE~~~~~y  362 (463)
                      ||||.++..|+++.+++++++|++|+++++++   .+++++.|++|+++++.++.++.++++.+..||.+++||+++|+|
T Consensus      1207 ~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y 1286 (1470)
T PLN03140       1207 WRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMY 1286 (1470)
T ss_pred             HCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999997664   567788999999999988988888889999999999999999999


Q ss_pred             chhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhhhHHH
Q psy1567         363 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVI  442 (463)
Q Consensus       363 ~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~  442 (463)
                      ++.+|++|++++|+|+.++++++|.+|+|||+|+++++..|+.|+++++++.+++.++|+++++++||.+.|..++++++
T Consensus      1287 ~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~ 1366 (1470)
T PLN03140       1287 SALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFY 1366 (1470)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccccCCCcccccC
Q psy1567         443 IPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       443 ~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      .++++|+|+++|.++||+||+
T Consensus      1367 ~~~~lf~Gf~i~~~~iP~~~~ 1387 (1470)
T PLN03140       1367 GLFNLFSGFFIPRPKIPKWWV 1387 (1470)
T ss_pred             HHHHHHeeeccChHHCchHHH
Confidence            999999999999999999985

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.9e-55  Score=493.43  Aligned_cols=459  Identities=19%  Similarity=0.318  Sum_probs=387.9

Q ss_pred             CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCC-----CchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHH-
Q psy1567           2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVP-----SREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQA-   75 (463)
Q Consensus         2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-   75 (463)
                      +|+++++.+||+++||+||++.|||||++|+++.+.     +.+...+.+++++++.|++|+.+++..++.+...+... 
T Consensus       292 ~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  371 (1394)
T TIGR00956       292 FGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE  371 (1394)
T ss_pred             ECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence            589999999999999999999999999999987542     22333456789999999999988776665543211100 


Q ss_pred             --H--HhhCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q psy1567          76 --K--AILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGV  151 (463)
Q Consensus        76 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~  151 (463)
                        .  .....+.. ..........+++.|+++|+++|++|++++.+|||..++.|+++++++|+++|++|++++++++++
T Consensus       372 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~  450 (1394)
T TIGR00956       372 SDTKEAYRESHVA-KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDF  450 (1394)
T ss_pred             hhhHHHHHHHHHh-hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhH
Confidence              0  00000000 001112334568899999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchh
Q psy1567         152 MNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF  231 (463)
Q Consensus       152 ~~~~g~~f~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~  231 (463)
                      ++|.|++|+++++.++.++.. +..+..||++|.||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|++.++
T Consensus       451 ~~r~g~lf~~~~~~~~~~~~~-i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~  529 (1394)
T TIGR00956       451 YSRGGALFFAILFNAFSSLLE-IASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA  529 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence            999999999999999998644 6777889999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHH-----------------------------------------------------------------
Q psy1567         232 SRFLTATLIITMAKA-----------------------------------------------------------------  246 (463)
Q Consensus       232 ~~f~~f~l~l~l~~~-----------------------------------------------------------------  246 (463)
                      ++|+.|+++++++..                                                                 
T Consensus       530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~  609 (1394)
T TIGR00956       530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV  609 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence            999999998776530                                                                 


Q ss_pred             ---------Hh---------------cCcc------------c---------------cc--------------------
Q psy1567         247 ---------IL---------------GGKM------------D---------------IF--------------------  255 (463)
Q Consensus       247 ---------i~---------------~~~~------------~---------------~~--------------------  255 (463)
                               +.               +..|            +               .|                    
T Consensus       610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~  689 (1394)
T TIGR00956       610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILL  689 (1394)
T ss_pred             hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence                     00               0000            0               00                    


Q ss_pred             -------------------------------------------------------------------------cC-----
Q psy1567         256 -------------------------------------------------------------------------SN-----  257 (463)
Q Consensus       256 -------------------------------------------------------------------------~~-----  257 (463)
                                                                                               ++     
T Consensus       690 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~  769 (1394)
T TIGR00956       690 TEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEV  769 (1394)
T ss_pred             HHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEe
Confidence                                                                                     00     


Q ss_pred             ----CCC--CC---------------------------------------------------------------------
Q psy1567         258 ----GNV--AN---------------------------------------------------------------------  262 (463)
Q Consensus       258 ----~~~--~~---------------------------------------------------------------------  262 (463)
                          ++.  ++                                                                     
T Consensus       770 ~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~  849 (1394)
T TIGR00956       770 KIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLP  849 (1394)
T ss_pred             cCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCC
Confidence                000  00                                                                     


Q ss_pred             --------------------------------------------------------------------------------
Q psy1567         263 --------------------------------------------------------------------------------  262 (463)
Q Consensus       263 --------------------------------------------------------------------------------  262 (463)
                                                                                                      
T Consensus       850 ~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEP  929 (1394)
T TIGR00956       850 TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEP  929 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy1567         263 --------------------------------------------------------------------------------  262 (463)
Q Consensus       263 --------------------------------------------------------------------------------  262 (463)
                                                                                                      
T Consensus       930 TsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~ 1009 (1394)
T TIGR00956       930 TSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPE 1009 (1394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCC
Confidence                                                                                            


Q ss_pred             ------------------C-----------------------------------------CCCCCCHHHHHHHHHHHhhh
Q psy1567         263 ------------------R-----------------------------------------SPYKANWWTQFKAVLWRSWL  283 (463)
Q Consensus       263 ------------------~-----------------------------------------~~~~~s~~~q~~~l~~R~~~  283 (463)
                                        .                                         +++++|+++|+++|++|.++
T Consensus      1010 ~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~ 1089 (1394)
T TIGR00956      1010 DANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQ 1089 (1394)
T ss_pred             CCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHH
Confidence                              0                                         02457899999999999999


Q ss_pred             hhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHhhCCCC
Q psy1567         284 SVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLF-MREHQNGMY  362 (463)
Q Consensus       284 ~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~-~rE~~~~~y  362 (463)
                      ..+|||.++..|+++.+++|+++|++|+++++++.+++++.|++|+.++...+.. ...++.++.||.++ .||+++|+|
T Consensus      1090 ~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~-~~~~~~f~~~r~~~~~RE~~s~~Y 1168 (1394)
T TIGR00956      1090 QYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLI-QQYLPPFVAQRDLYEVRERPSRTF 1168 (1394)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999999999999999999999888776663 46678888888886 999999999


Q ss_pred             chhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHH
Q psy1567         363 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSR-------FLTATLIITMVSTVATSFGYLISCISSSVSVAL  435 (463)
Q Consensus       363 ~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~-------f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~  435 (463)
                      ++.+|++|++++|+|+.++.+++|.+|+||++|+++++..       |+.+++++++..+++.++|++++++++|...|+
T Consensus      1169 ~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~ 1248 (1394)
T TIGR00956      1169 SWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248 (1394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence            9999999999999999999999999999999999887755       999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567         436 SIGPPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       436 ~~~~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      .++++++.++++|||+++|.+++|+||+
T Consensus      1249 ~~~~~~~~~~~lf~G~~~~~~~ip~~~~ 1276 (1394)
T TIGR00956      1249 VLASLLFTMCLSFCGVLAPPSRMPGFWI 1276 (1394)
T ss_pred             HHHHHHHHHHHHhccccCChhHCcHHHh
Confidence            9999999999999999999999999975

>KOG0065|consensus

Probab=100.00  E-value=9.6e-53  Score=442.64  Aligned_cols=450  Identities=20%  Similarity=0.332  Sum_probs=400.6

Q ss_pred             CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCCC-------chhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhH
Q psy1567           2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPS-------REETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQ   74 (463)
Q Consensus         2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~   74 (463)
                      +|+.+++++||+++||.||+++++|||+.++.+..+.       ........++++.+.|++++.+.+..++.+.+.+..
T Consensus       343 ~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~  422 (1391)
T KOG0065|consen  343 QGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKS  422 (1391)
T ss_pred             eccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhh
Confidence            6999999999999999999999999999999983322       112233456999999999999999988877665433


Q ss_pred             HHHhhCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCC-CCccccch
Q psy1567          75 AKAILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQN-LDQDGVMN  153 (463)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~-~~~~~~~~  153 (463)
                      .           ..+...+.+++..+.|.|++.|++|.+..++||..++..+.++.+++|+++|++|++++ .+..+...
T Consensus       423 k-----------~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~  491 (1391)
T KOG0065|consen  423 K-----------KHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYS  491 (1391)
T ss_pred             h-----------ccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchh
Confidence            1           12234566789999999999999999999999999999999999999999999999999 77889999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhh
Q psy1567         154 INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSR  233 (463)
Q Consensus       154 ~~g~~f~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~  233 (463)
                      +.|.+||.+++.++.++.. ++.....|++++|+|...+|++++|.++..++++|..++.+++|.+|.||++|+.+++++
T Consensus       492 ~~~~lffsll~~~f~~laE-i~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~r  570 (1391)
T KOG0065|consen  492 RGGALFFALLFNLFNGLAE-IALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGR  570 (1391)
T ss_pred             hhhHHHHHHHHHHHHhHHH-HHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHH
Confidence            9999999999999998755 677789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH------------------------------------------------------------------
Q psy1567         234 FLTATLIITMAKAI------------------------------------------------------------------  247 (463)
Q Consensus       234 f~~f~l~l~l~~~i------------------------------------------------------------------  247 (463)
                      ||.+++++++.+..                                                                  
T Consensus       571 FF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NE  650 (1391)
T KOG0065|consen  571 FFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNE  650 (1391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhh
Confidence            99999999887521                                                                  


Q ss_pred             --------h------------cCcc-------------------------c--cc-------------------------
Q psy1567         248 --------L------------GGKM-------------------------D--IF-------------------------  255 (463)
Q Consensus       248 --------~------------~~~~-------------------------~--~~-------------------------  255 (463)
                              +            +..|                         .  .|                         
T Consensus       651 F~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~  730 (1391)
T KOG0065|consen  651 FHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK  730 (1391)
T ss_pred             hhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence                    0            0000                         0  01                         


Q ss_pred             --------------------c-C----------------C-C-C------------------------------------
Q psy1567         256 --------------------S-N----------------G-N-V------------------------------------  260 (463)
Q Consensus       256 --------------------~-~----------------~-~-~------------------------------------  260 (463)
                                          . +                + + +                                    
T Consensus       731 p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG~~~qLL~~V  810 (1391)
T KOG0065|consen  731 PLKKSGAILVFKKGKEKKKVKSAGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQGGTRQLLNNV  810 (1391)
T ss_pred             ccccccceeeeccchhhhcchhccccccccccccccccccccccCCCccccccccceEEEEeCCccccccccceEhhhcC
Confidence                                0 0                0 0 0                                    


Q ss_pred             ------------------CC------------------------------------------------------------
Q psy1567         261 ------------------AN------------------------------------------------------------  262 (463)
Q Consensus       261 ------------------~~------------------------------------------------------------  262 (463)
                                        .|                                                            
T Consensus       811 ~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~  890 (1391)
T KOG0065|consen  811 SGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAA  890 (1391)
T ss_pred             ceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHH
Confidence                              00                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy1567         263 --------------------------------------------------------------------------------  262 (463)
Q Consensus       263 --------------------------------------------------------------------------------  262 (463)
                                                                                                      
T Consensus       891 LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~  970 (1391)
T KOG0065|consen  891 LRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVM  970 (1391)
T ss_pred             HcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy1567         263 --------------------------------------------------------------------------------  262 (463)
Q Consensus       263 --------------------------------------------------------------------------------  262 (463)
                                                                                                      
T Consensus       971 ~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~ 1050 (1391)
T KOG0065|consen  971 RFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIG 1050 (1391)
T ss_pred             HHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcc
Confidence                                                                                            


Q ss_pred             --------------------------------------------CCCCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHH
Q psy1567         263 --------------------------------------------RSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQ  298 (463)
Q Consensus       263 --------------------------------------------~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~  298 (463)
                                                                  +++|++|++.|++.+++|++..+||+|.++..|++.
T Consensus      1051 ~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~ 1130 (1391)
T KOG0065|consen 1051 AGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFAL 1130 (1391)
T ss_pred             cccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence                                                        123678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhH
Q psy1567         299 TLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPI  378 (463)
Q Consensus       299 ~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~  378 (463)
                      .++.++++|+.|++++.+..+.++..+++|+.+++........+...+..||..++||+++++|+..+|++|++++|+|+
T Consensus      1131 ~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~ 1210 (1391)
T KOG0065|consen 1131 TIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPY 1210 (1391)
T ss_pred             HHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888777667788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCc
Q psy1567         379 FLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLM  458 (463)
Q Consensus       379 ~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~l  458 (463)
                      .++++.+|.++.|+++|+.+++.+++++++.+++..++...+|+++.+++||.+.|..+.+.++.....|||+++|...+
T Consensus      1211 ~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~i 1290 (1391)
T KOG0065|consen 1211 NLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLI 1290 (1391)
T ss_pred             HHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q psy1567         459 GVAIF  463 (463)
Q Consensus       459 P~~l~  463 (463)
                      |+||+
T Consensus      1291 P~fW~ 1295 (1391)
T KOG0065|consen 1291 PKFWI 1295 (1391)
T ss_pred             cceee
Confidence            99996

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=2.7e-40  Score=346.40  Aligned_cols=235  Identities=23%  Similarity=0.382  Sum_probs=176.6

Q ss_pred             CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCCCc----hhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHH
Q psy1567           2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSR----EETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKA   77 (463)
Q Consensus         2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~   77 (463)
                      .|+.+++++||+++|++||++.|||||++|+++.+.+.    +.+.....+++.+.|++.... +..+..+...... ..
T Consensus       288 ~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~  365 (659)
T PLN03211        288 FGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAP-KVKAAIEMSHFPQ-AN  365 (659)
T ss_pred             ECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccH-HHHHHHhhhhhhc-ch
Confidence            58899999999999999999999999999999864321    111222335566666532211 1111111100000 00


Q ss_pred             hhCCCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhH
Q psy1567          78 ILGGKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGA  157 (463)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~  157 (463)
                      ........ .......+..+.++|++|+++|++|++++ +||+.....|+++++++|+++|++|++++  ++++++|.|+
T Consensus       366 ~~~~~~~~-~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~  441 (659)
T PLN03211        366 ARFVGSAS-TKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGL  441 (659)
T ss_pred             hhhhhccc-ccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Confidence            00000000 00001112235678999999999999988 89999999999999999999999999985  6789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHH
Q psy1567         158 LFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTA  237 (463)
Q Consensus       158 ~f~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f  237 (463)
                      +|+++++..+.+...+++.|+.||++|.||+.+|+|++++|++||+++|+|+.++.+++|.+|+|||+|+++++.+|+.|
T Consensus       442 lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f  521 (659)
T PLN03211        442 LFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLT  521 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHH
Confidence            99999998888888899999999999999999999999999999999999999999999999999999999876666665


Q ss_pred             HHHHH
Q psy1567         238 TLIIT  242 (463)
Q Consensus       238 ~l~l~  242 (463)
                      +++++
T Consensus       522 ~li~~  526 (659)
T PLN03211        522 LLVLL  526 (659)
T ss_pred             HHHHH
Confidence            55444

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=1.5e-39  Score=340.97  Aligned_cols=233  Identities=50%  Similarity=0.898  Sum_probs=193.8

Q ss_pred             CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhCC
Q psy1567           2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGG   81 (463)
Q Consensus         2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~   81 (463)
                      +|+++++.+||+++|++||++.|||||++|+++.+++.+....++.+++.+.|++++.+++..+..+...+.+      +
T Consensus       248 ~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~------~  321 (617)
T TIGR00955       248 LGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKA------G  321 (617)
T ss_pred             ECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccc------c
Confidence            6899999999999999999999999999999987766555556677888888888876654433322111000      0


Q ss_pred             CcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHH
Q psy1567          82 KMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFIC  161 (463)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~  161 (463)
                      ...  ......+..++..+++.|+++|++|++++.+|||..+..|+++++++|+++|++|+++++++++++++.|++|++
T Consensus       322 ~~~--~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~  399 (617)
T TIGR00955       322 GLV--KDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLF  399 (617)
T ss_pred             ccc--cccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence            000  001111234567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Q psy1567         162 LTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLII  241 (463)
Q Consensus       162 ~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l  241 (463)
                      .+..++.++..+++.|+.||++|.||+.+|+|++++|++||+++|+|+.++.+++|++|+|||+|+++++.+|+.|++++
T Consensus       400 ~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~  479 (617)
T TIGR00955       400 LTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLV  479 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHH
Confidence            99999998888899999999999999999999999999999999999999999999999999999987766665554443


Q ss_pred             H
Q psy1567         242 T  242 (463)
Q Consensus       242 ~  242 (463)
                      +
T Consensus       480 ~  480 (617)
T TIGR00955       480 T  480 (617)
T ss_pred             H
Confidence            3

>KOG0061|consensus

Probab=100.00  E-value=8.3e-36  Score=309.32  Aligned_cols=197  Identities=45%  Similarity=0.837  Sum_probs=192.8

Q ss_pred             CCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy1567         267 KANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVF  346 (463)
Q Consensus       267 ~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~  346 (463)
                      .++++.|+.++.+|.+++.+|||.....|+++.+.+++++|.+|++.+.+..+++++.|++++.+....+..+.+++..+
T Consensus       333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f  412 (613)
T KOG0061|consen  333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVF  412 (613)
T ss_pred             CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             hhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567         347 CSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISC  426 (463)
Q Consensus       347 ~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~  426 (463)
                      +.||+++.||+.+++|+..+|++|++++++|+.++.+++|.+|+|||+|++++..+|+.+.+++++..+++.++|+++++
T Consensus       413 ~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~  492 (613)
T KOG0061|consen  413 PQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISA  492 (613)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567         427 ISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       427 ~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      ..+|...|+.+++++.+++++++|++++.+++|.|++
T Consensus       493 ~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~  529 (613)
T KOG0061|consen  493 IVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFR  529 (613)
T ss_pred             hccchhheeehHHHHHHHHHHHhhhhcCcccccHHHH
Confidence            9999999999999999999999999999999999874

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.2e-33  Score=314.66  Aligned_cols=227  Identities=19%  Similarity=0.362  Sum_probs=191.5

Q ss_pred             hhHHHHHHhhc-CCC-CCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhCCC
Q psy1567           5 QQTFFQFGLRL-GAA-CPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGK   82 (463)
Q Consensus         5 ~~~~~~yF~~~-G~~-cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~   82 (463)
                      ++++++||+++ |++ ||+++|||||++|+++.+.+.     ...++|.+.|++|+.+++..+..+....      +.+ 
T Consensus      1109 ~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-----~~~~d~~~~~~~s~~~~~~~~~~~~~~~------~~~- 1176 (1470)
T PLN03140       1109 SHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-----KLGIDFAEHYKSSSLYQRNKALVKELST------PPP- 1176 (1470)
T ss_pred             cccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc-----cccchHHHHHhccHHHHHHHHHHHHhcc------CCC-
Confidence            47999999998 674 999999999999998754321     1235799999999887765544322110      000 


Q ss_pred             cccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCc---cccchhhhHHH
Q psy1567          83 MDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQ---DGVMNINGALF  159 (463)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~---~~~~~~~g~~f  159 (463)
                          .........++.+++++|+++|++|++++.||||.+...|+++++++|+++|++|+++++++   .+++++.|++|
T Consensus      1177 ----~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~ 1252 (1470)
T PLN03140       1177 ----GASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMY 1252 (1470)
T ss_pred             ----CccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHH
Confidence                01111224568899999999999999999999999999999999999999999999999775   46778899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Q psy1567         160 ICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATL  239 (463)
Q Consensus       160 ~~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l  239 (463)
                      +++++..+..+...++.|..||++|+||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+|+++++..|+.|++
T Consensus      1253 ~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~ 1332 (1470)
T PLN03140       1253 AAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYF 1332 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence            99999888877788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy1567         240 IITMAKAI  247 (463)
Q Consensus       240 ~l~l~~~i  247 (463)
                      +++++...
T Consensus      1333 ~~~l~~~~ 1340 (1470)
T PLN03140       1333 ISFFSFLY 1340 (1470)
T ss_pred             HHHHHHHH
Confidence            99877643

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=3.6e-33  Score=313.96  Aligned_cols=230  Identities=20%  Similarity=0.347  Sum_probs=189.6

Q ss_pred             hhHHHHHHhhcCC-CCCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhCCCc
Q psy1567           5 QQTFFQFGLRLGA-ACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKM   83 (463)
Q Consensus         5 ~~~~~~yF~~~G~-~cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (463)
                      ++++++||+++|+ +||+++|||||++|+++.+.+.+.     .++|.+.|++++..++..++.+.....      ....
T Consensus       992 ~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~------~~~~ 1060 (1394)
T TIGR00956       992 SHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA-----NQDYHEVWRNSSEYQAVKNELDRLEAE------LSKA 1060 (1394)
T ss_pred             cchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch-----hccHHHHHhcCHHHHHHHHHHHHhhcc------cccC
Confidence            3789999999996 999999999999999986543221     257899999988776554443221110      0000


Q ss_pred             ccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHHHH
Q psy1567          84 DIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLT  163 (463)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~~~  163 (463)
                      +  .........++++++++|+++|++|++++.||||.+...|+++++++|+++|++|+++++++.+++++.|++|+.++
T Consensus      1061 ~--~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~ 1138 (1394)
T TIGR00956      1061 E--DDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATV 1138 (1394)
T ss_pred             c--cccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            0  00111123467899999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHhhhhhhHH-HHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhh-------HH
Q psy1567         164 NMTFQNVFAVISVFCSELPLF-MREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSR-------FL  235 (463)
Q Consensus       164 ~~~~~~~~~~i~~f~~er~i~-~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~-------f~  235 (463)
                      ...+. ....++.|+.||.++ .||+.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+|+++++..       |+
T Consensus      1139 ~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~ 1217 (1394)
T TIGR00956      1139 LFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGV 1217 (1394)
T ss_pred             HHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHH
Confidence            77666 457788999999886 9999999999999999999999999999999999999999999988766       99


Q ss_pred             HHHHHHHHHHHHh
Q psy1567         236 TATLIITMAKAIL  248 (463)
Q Consensus       236 ~f~l~l~l~~~i~  248 (463)
                      .|++++++....+
T Consensus      1218 ~~~~~~~~~~~~~ 1230 (1394)
T TIGR00956      1218 LFWLLSTMFFLYF 1230 (1394)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988876543

>KOG0065|consensus

Probab=99.97  E-value=2.9e-31  Score=280.87  Aligned_cols=227  Identities=19%  Similarity=0.322  Sum_probs=193.8

Q ss_pred             hhHHHHHHhhcC-CCCCCCCCchHHHHHHhccCCCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhCCCc
Q psy1567           5 QQTFFQFGLRLG-AACPSNYNPADYFIQLLAVVPSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILGGKM   83 (463)
Q Consensus         5 ~~~~~~yF~~~G-~~cP~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (463)
                      ++.+++||+++| .+||+..|||||++|+++...+.+..     .+|++.|++|+.+++..++.+...+..      +. 
T Consensus      1020 s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~-----~D~a~~w~~S~e~k~~~e~v~~l~~~~------~~- 1087 (1391)
T KOG0065|consen 1020 SSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLS-----VDFAEIWKNSEEYKRNKELVKELSQPP------PG- 1087 (1391)
T ss_pred             cHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccC-----ccHHHHHhccHHHHHHHHHHHHHhcCC------cc-
Confidence            467888999998 99999999999999999865544322     389999999999998887765432211      00 


Q ss_pred             ccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHHHH
Q psy1567          84 DIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLT  163 (463)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~~~  163 (463)
                         .......+.++.+|+|.|++.+++|++..+||||.+++.|++..++.|+++|+.||+++++..+.+|.+|++|..++
T Consensus      1088 ---~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v 1164 (1391)
T KOG0065|consen 1088 ---FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATV 1164 (1391)
T ss_pred             ---CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHH
Confidence               12234445678999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHH
Q psy1567         164 NMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITM  243 (463)
Q Consensus       164 ~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l~l  243 (463)
                      +..-.......+.+..||.+++||+.+|+|++.+|.+|++++|+|+.++++.+|.+|.|+++|+.+.+.+++.|++..++
T Consensus      1165 ~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~ 1244 (1391)
T KOG0065|consen 1165 FSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFI 1244 (1391)
T ss_pred             HhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHH
Confidence            76666444466777889999999999999999999999999999999999999999999999999999998888877666


Q ss_pred             HHH
Q psy1567         244 AKA  246 (463)
Q Consensus       244 ~~~  246 (463)
                      ...
T Consensus      1245 f~l 1247 (1391)
T KOG0065|consen 1245 FFL 1247 (1391)
T ss_pred             HHH
Confidence            543

>KOG0061|consensus

Probab=99.89  E-value=1.1e-21  Score=204.10  Aligned_cols=232  Identities=36%  Similarity=0.649  Sum_probs=190.0

Q ss_pred             CcchhHHHHHHhhcCCCCCCCCCchHHHHHHhccC-CCchhhhHHHHHHHHHHhhcChHHHHHHHhhhhhhhhHHHHhhC
Q psy1567           2 FPQQQTFFQFGLRLGAACPSNYNPADYFIQLLAVV-PSREETCRNTIEMVCDTFDRSEYGIKLAQATELRGDLQAKAILG   80 (463)
Q Consensus         2 ~~~~~~~~~yF~~~G~~cP~~~NpADf~ldv~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~   80 (463)
                      +|+++++++||+++|+|||++.|||||++|+++.+ +..+.....+.....+.++..+..   .+..+ .   ....   
T Consensus       252 ~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~---~~~~---  321 (613)
T KOG0061|consen  252 SGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNL---KKTLE-A---LEKS---  321 (613)
T ss_pred             ecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchh---hhhHH-H---Hhhh---
Confidence            69999999999999999999999999999999975 333333333333333333320000   00000 0   0000   


Q ss_pred             CCcccccCCCCCCCCCCCCcHHHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHH
Q psy1567          81 GKMDIFSNGNVANRSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFI  160 (463)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~  160 (463)
                       ..+     ....+....++||.|+++|++|.+++.+|||.....|+++++++|+++|++|++++++..+++++.|++|+
T Consensus       322 -~~~-----~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~  395 (613)
T KOG0061|consen  322 -LST-----SKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFF  395 (613)
T ss_pred             -ccc-----ccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH
Confidence             000     00111111789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Q psy1567         161 CLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLI  240 (463)
Q Consensus       161 ~~~~~~~~~~~~~i~~f~~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~  240 (463)
                      .+..+.+.++.++++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|.++
T Consensus       396 ~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~  475 (613)
T KOG0061|consen  396 ILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLI  475 (613)
T ss_pred             HHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence            99999999999899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy1567         241 ITMAKAILG  249 (463)
Q Consensus       241 l~l~~~i~~  249 (463)
                      +++...+++
T Consensus       476 ~~~~~~~a~  484 (613)
T KOG0061|consen  476 ILLSSLVAE  484 (613)
T ss_pred             HHHHHHHHH
Confidence            999876554

>PLN03211 ABC transporter G-25; Provisional

Probab=99.87  E-value=3.9e-21  Score=202.11  Aligned_cols=194  Identities=25%  Similarity=0.498  Sum_probs=186.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy1567         265 PYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVIS  344 (463)
Q Consensus       265 ~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~  344 (463)
                      .+.+||++|+++|++|+++. +||+.....|+++.+++|+++|.+|++.+  +.+++++.|++|+++++.++.++++++.
T Consensus       383 ~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~  459 (659)
T PLN03211        383 ISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVF  459 (659)
T ss_pred             ccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999998 89999999999999999999999999874  6789999999999999988888889999


Q ss_pred             HhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567         345 VFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLI  424 (463)
Q Consensus       345 ~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i  424 (463)
                      .++.||++++||+.+|+|++.+|++||+++++|+.++.+++|.+|+|||+|+++++.+|+.|++++++..+++.++|+++
T Consensus       460 ~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i  539 (659)
T PLN03211        460 VFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLAL  539 (659)
T ss_pred             HHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567         425 SCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       425 ~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      +++++|.+.|+.++++++.++++||||+++  ++|+||+
T Consensus       540 ~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~  576 (659)
T PLN03211        540 GAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMA  576 (659)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHH
Confidence            999999999999999999999999999997  7999974

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.85  E-value=5.8e-20  Score=193.22  Aligned_cols=201  Identities=60%  Similarity=1.058  Sum_probs=195.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy1567         263 RSPYKANWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAV  342 (463)
Q Consensus       263 ~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~  342 (463)
                      .+++..+++.|++++++|.++..+|||..+..+++..+++++++|.+|++.+.++.+++++.|++|++++..++.++..+
T Consensus       332 ~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~  411 (617)
T TIGR00955       332 GIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPV  411 (617)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567         343 ISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGY  422 (463)
Q Consensus       343 i~~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~  422 (463)
                      +..++.||+++.||+.+|+|++.+|++||+++++|..++.+++|.+|+||++|+++++.+|+.+++++++..+++.++|.
T Consensus       412 ~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~  491 (617)
T TIGR00955       412 INVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGY  491 (617)
T ss_pred             HHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567         423 LISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       423 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      +++++++|...|+.+++++++++++|+|+++|.+++|.||+
T Consensus       492 ~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~  532 (617)
T TIGR00955       492 LISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFK  532 (617)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHH
Confidence            99999999999999999999999999999999999999874

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.77  E-value=1.6e-20  Score=171.25  Aligned_cols=188  Identities=22%  Similarity=0.331  Sum_probs=172.0

Q ss_pred             HHHHHHHHHhhhhhccChhhH-HHHHHHHHHHHHHHHHHhcCCCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1567         272 TQFKAVLWRSWLSVRKDPTLM-KVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSEL  350 (463)
Q Consensus       272 ~q~~~l~~R~~~~~~R~~~~~-~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er  350 (463)
                      +|++.+++|++++.+|||... ...++.+++.++++|.++.+.+++.++. ++.+.+...+....+....+......+||
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER   79 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence            599999999999999999888 9999999999999999999988444444 67788888888777666656668889999


Q ss_pred             hHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy1567         351 PLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSS  430 (463)
Q Consensus       351 ~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~  430 (463)
                      +.+.||+.++.|++.+|.++|.+.+++..++.++++.++.+.+.|++.+  +++.+++.+++..+++.++|.+++.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~  157 (210)
T PF01061_consen   80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS  157 (210)
T ss_pred             cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence            9999999999999999999999999999999999999999999999877  77888999999999999999999999999


Q ss_pred             hhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567         431 VSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI  462 (463)
Q Consensus       431 ~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l  462 (463)
                      .+.+..+.+++..+++++||.++|.+++|+|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~  189 (210)
T PF01061_consen  158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWL  189 (210)
T ss_pred             hhhhhhhhhhcccccccceeeecchHHChHHH
Confidence            99999999999999999999999999999875

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.47  E-value=2.3e-12  Score=119.79  Aligned_cols=179  Identities=14%  Similarity=0.181  Sum_probs=132.8

Q ss_pred             HhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCC-CCC--hhhhhhh----hHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy1567         280 RSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQ-NLD--QDGVMNI----NGALFICLTNMTFQNVFAVISVFCSELPL  352 (463)
Q Consensus       280 R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~-~~~--~~~~~~~----~~~lf~~~~~~~~~~~~~~i~~~~~er~~  352 (463)
                      |++|+..|||......++.|++..+++|.++.+. +.+  ..+....    .|.+.+.....+....  ......+|++.
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~--~~~~~~~~~g~   78 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSG--ISVIWDRQFGF   78 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhCH
Confidence            7889999999999999999999999999988753 111  1111111    2333333333332221  11222344444


Q ss_pred             HHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Q psy1567         353 FMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVS  432 (463)
Q Consensus       353 ~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~  432 (463)
                      +.|=. ....+...|+++|.+.+++..+++.++..++.+++.+.+  ...++..++..++...+..++|.+++...+|.+
T Consensus        79 ~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~  155 (236)
T TIGR01247        79 LKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILK--PSGVIPTLVLAFIVGVALSGLGVAIAARMDSME  155 (236)
T ss_pred             HHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            44444 444489999999999999999999999999998887755  334555556666777888999999999999999


Q ss_pred             hHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567         433 VALSIGPPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       433 ~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      .++.+.+++..++.++||.+.|.+.+|+|++
T Consensus       156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~  186 (236)
T TIGR01247       156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQ  186 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHH
Confidence            9999999999999999999999999999863

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.45  E-value=6.6e-12  Score=117.76  Aligned_cols=187  Identities=13%  Similarity=0.061  Sum_probs=137.2

Q ss_pred             HHHHHHHHhhhhhccC-hhhHHHHHHHHHHHHHHHHHHhcCCCCChhh--hhhh--hHHHHHHHHHHHHHHHHHHHHHhh
Q psy1567         273 QFKAVLWRSWLSVRKD-PTLMKVRLLQTLMVSIMIGLIYFGQNLDQDG--VMNI--NGALFICLTNMTFQNVFAVISVFC  347 (463)
Q Consensus       273 q~~~l~~R~~~~~~R~-~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~--~~~~--~~~lf~~~~~~~~~~~~~~i~~~~  347 (463)
                      +...+.+|++++.+|+ |......+++|++..+++|..+.....+..+  ..+.  .|++-+.++..+..........-.
T Consensus         6 ~~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~   85 (253)
T TIGR01291         6 NWAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARM   85 (253)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567789999999999 9999999999999999999998754111111  1111  144444444443322211122222


Q ss_pred             hhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1567         348 SELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCI  427 (463)
Q Consensus       348 ~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~  427 (463)
                      +|++.++|-+..+. ++..+++||++.+....+++.++...+.+.+ |..+ ...++..+.+.++..++..++|.+++.+
T Consensus        86 r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~-~~~~l~~~~~~ll~~l~~~~lg~~~a~~  162 (253)
T TIGR01291        86 RVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIE-WWSLIYILPVIALTGLAFASLSMLVAAL  162 (253)
T ss_pred             HHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhch-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666665 9999999999999888888887766665543 5443 3445555667677888888999999999


Q ss_pred             cCChhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567         428 SSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI  462 (463)
Q Consensus       428 ~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l  462 (463)
                      .++.+.+..+...+..|++++||.+.|.+++|+|+
T Consensus       163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~l  197 (253)
T TIGR01291       163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVI  197 (253)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHH
Confidence            99999999999999999999999999999999986

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.41  E-value=2.3e-11  Score=114.29  Aligned_cols=188  Identities=15%  Similarity=0.180  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCC-CC------Ch--hh-hhhhhHHHHHHHHHHHHHHHH
Q psy1567         271 WTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQ-NL------DQ--DG-VMNINGALFICLTNMTFQNVF  340 (463)
Q Consensus       271 ~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~-~~------~~--~~-~~~~~~~lf~~~~~~~~~~~~  340 (463)
                      ++++.++.+|++++..|||..+...++.|++..+++|.+|... +.      +.  +. ..-..|++-+.+...++.+. 
T Consensus         1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~-   79 (253)
T TIGR03861         1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSS-   79 (253)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhh-
Confidence            3678999999999999999999999999999999999998643 11      11  11 11112443333333333221 


Q ss_pred             HHHHHhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy1567         341 AVISVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSF  420 (463)
Q Consensus       341 ~~i~~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~l  420 (463)
                       ......+|++.+.+-+..+. +...+.++|++.+....+++.++..++.+. .|.+.+...++......++...+..++
T Consensus        80 -~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l  156 (253)
T TIGR03861        80 -LSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL  156 (253)
T ss_pred             -hHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence             12233455556666666665 899999999999998888887776666654 376655444555555666677888899


Q ss_pred             HHHHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCc---cccc
Q psy1567         421 GYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLM---GVAI  462 (463)
Q Consensus       421 g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~l---P~~l  462 (463)
                      |.++|.++++.+.+..+.+++..+++++||.+.|.+++   |+|+
T Consensus       157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l  201 (253)
T TIGR03861       157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWL  201 (253)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHH
Confidence            99999999999999999999999999999999998776   6665

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.28  E-value=1.2e-12  Score=119.04  Aligned_cols=142  Identities=25%  Similarity=0.323  Sum_probs=123.3

Q ss_pred             HHHHHHHHHhhHhhccChhHH-HHHHHHHHHHHHHHHHHHhCCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1567         103 TQFKAVLWRSWLSVRKDPTLM-KVRLLQTLMVSIMIGLIYFGQNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSEL  181 (463)
Q Consensus       103 ~q~~~L~~R~~~~~~Rn~~~~-~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~i~~f~~er  181 (463)
                      +|++.|++|+++..+|||... ..+++..++.++++|.++.+++++.++. ++.++++..+....+....+......+||
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER   79 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence            599999999999999999888 8999999999999999999998545555 77888888888777666666657789999


Q ss_pred             hHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHH
Q psy1567         182 PLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAKAI  247 (463)
Q Consensus       182 ~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l~l~~~i  247 (463)
                      ..+.||+.++.|++.+|.++|.+.+++..++.++++..+.|.+.|++.+  +++.+.+.+++....
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~  143 (210)
T PF01061_consen   80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILC  143 (210)
T ss_pred             cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheeccccccccc
Confidence            9999999999999999999999999999999999999999999999987  666666665555433

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.27  E-value=3.4e-10  Score=104.88  Aligned_cols=173  Identities=12%  Similarity=0.086  Sum_probs=115.2

Q ss_pred             ccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhCCCCch
Q psy1567         286 RKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN-INGALFICLTNMTFQNVFAVISVFCSELPLFMREHQNGMYRV  364 (463)
Q Consensus       286 ~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~-~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE~~~~~y~~  364 (463)
                      +|||......+.+|+++.++++.++.+... .+.... ..+.+-+..+..+.... +......+|++.+.|-+.++. ++
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~er~~G~l~rl~~~P~-~~   78 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-HNRGATFIPVLMALAAISTAFTGQ-AIAVARDRRYGALKRLGATPL-PR   78 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCccC-CcchhHhhHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHhcCCC-cH
Confidence            699999999999999999999999886311 112221 22333333332222222 222233444556666665555 99


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChhhHHHhhhHH
Q psy1567         365 DVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISS---SVSVALSIGPPV  441 (463)
Q Consensus       365 ~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~---~~~~a~~~~~~~  441 (463)
                      ..|+++|.+...+..+++..+..++ ++..|++.... ....++...+....+..++.+++.+++   +.+.+..+.++.
T Consensus        79 ~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~  156 (232)
T TIGR00025        79 LGILAGRSLAVVARVFLQTLILLVI-GFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLV  156 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            9999999888888877776555544 55678875432 233334444455556666777777764   455558888999


Q ss_pred             HHHHHHhhhccccCCCcccccC
Q psy1567         442 IIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       442 ~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      .+++.++||.+.|.+.+|+|++
T Consensus       157 ~~p~~~lSG~~~P~~~mP~~lq  178 (232)
T TIGR00025       157 WFIFALLSAGLVPLNLIPTWIK  178 (232)
T ss_pred             HHHHHHHhheeeecccccHHHH
Confidence            9999999999999999999974

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PRK15066 inner membrane transport permease; Provisional

Probab=99.10  E-value=1.4e-08  Score=95.62  Aligned_cols=190  Identities=12%  Similarity=0.134  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHhhhhhccChhh-HHHHHHHHHHHHHHHHHHhcCC-CC--Chhhh-hhhhHHHHHHHHHHHHHHHHHHHH
Q psy1567         270 WWTQFKAVLWRSWLSVRKDPTL-MKVRLLQTLMVSIMIGLIYFGQ-NL--DQDGV-MNINGALFICLTNMTFQNVFAVIS  344 (463)
Q Consensus       270 ~~~q~~~l~~R~~~~~~R~~~~-~~~~l~~~~~~~~i~g~~f~~~-~~--~~~~~-~~~~~~lf~~~~~~~~~~~~~~i~  344 (463)
                      .++.++.+.+|+++...||+.. ...-++++++..+++|.++... +.  +.+.. .-..|.+-+.....+.......+.
T Consensus         6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~~~i~   85 (257)
T PRK15066          6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVASSFF   85 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999865 3334455556666666665421 11  11111 111244444443333332212122


Q ss_pred             HhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567         345 VFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLI  424 (463)
Q Consensus       345 ~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i  424 (463)
                      . .++.+.++|=..++ .+...+.+++++......+++.++..++.+...|.+..  .........++...+....|.++
T Consensus        86 ~-~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~  161 (257)
T PRK15066         86 S-AKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN  161 (257)
T ss_pred             H-HHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 12222333333344 48999999999999888888887777777766666643  23334444444445455568999


Q ss_pred             HHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567         425 SCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       425 ~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      +.+.++.+.+..+.+++..+++++||.+.|.+++|+|++
T Consensus       162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~  200 (257)
T PRK15066        162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQ  200 (257)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHH
Confidence            988889899999999999999999999999999999863

>TIGR01248 drrC daunorubicin resistance protein C

Probab=98.79  E-value=1.9e-07  Score=80.28  Aligned_cols=116  Identities=9%  Similarity=-0.072  Sum_probs=89.7

Q ss_pred             HhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchH--HHHHHHHHHHHHHHHHHHHHHH
Q psy1567         345 VFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF--SRFLTATLIITMVSTVATSFGY  422 (463)
Q Consensus       345 ~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~--~~f~~~~l~~~l~~~~~~~lg~  422 (463)
                      ...+|++.++|-+.++. +++.++++|++......+++.++..++.+. .|.+.+.  ...+...++..+.......+|.
T Consensus        13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~   90 (152)
T TIGR01248        13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVM   90 (152)
T ss_pred             HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777777776 999999999999999999999988888864 4877653  2233445555666667777888


Q ss_pred             HHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567         423 LISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       423 ~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      .++...++.+..+ ....+++|+.++||.+.|.+++|+|++
T Consensus        91 ~~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq  130 (152)
T TIGR01248        91 AMALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQ  130 (152)
T ss_pred             HHHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHH
Confidence            8877766655544 457789999999999999999999974

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=98.67  E-value=2.2e-07  Score=84.60  Aligned_cols=98  Identities=14%  Similarity=0.022  Sum_probs=84.1

Q ss_pred             CchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhhhHH
Q psy1567         362 YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPPV  441 (463)
Q Consensus       362 y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~  441 (463)
                      -+.+.++++|.+..++..+++.++...+.++..|+++.  +++.+++..++..+++.++|.+++++.++...  ....+.
T Consensus        57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~  132 (208)
T TIGR03062        57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVL  132 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHH
Confidence            47788999999999999999999999999999999864  57788888899999999999999999987544  444555


Q ss_pred             HHHHHHhhhccccCCCcccccC
Q psy1567         442 IIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       442 ~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      ..++++++|.+.|.+++|+|++
T Consensus       133 ~~~~~~~sG~~~P~~~~P~~~~  154 (208)
T TIGR03062       133 LVLQLGSSGGTFPIELLPAFFQ  154 (208)
T ss_pred             HHHHHccCCCccchhhCHHHHH
Confidence            6678888999999999999863

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.21  E-value=0.00018  Score=66.71  Aligned_cols=164  Identities=13%  Similarity=0.102  Sum_probs=92.6

Q ss_pred             HHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcC---CCCChhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh--
Q psy1567         275 KAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFG---QNLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSE--  349 (463)
Q Consensus       275 ~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~---~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~e--  349 (463)
                      +.+.||+++.+.|.|.....-.+..++.++.......+   .+.+..+.....+...+..  ...... -+...+.+|  
T Consensus         2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~p~-l~~~~ia~Er~   78 (240)
T TIGR03518         2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFLWVFPGDFNILDYGYADLTPFFSLAPWVF--LFLIPA-ITMRSFAEERK   78 (240)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhHHhcCcchHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHH
Confidence            57899999999999999988777777766443222111   1112222222222211111  111111 112223233  


Q ss_pred             hhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHH---HHHHHHHHhcCC---cchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567         350 LPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPV---IFTSVMYYMVHL---NPIFSRFLTATLIITMVSTVATSFGYL  423 (463)
Q Consensus       350 r~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~---i~~~i~y~~~g~---~~~~~~f~~~~l~~~l~~~~~~~lg~~  423 (463)
                      ++.+..-...+. +.+.+.+||.+.......+..+   ++..... ..|.   +.+.+.+....+..++...+..++|.+
T Consensus        79 ~GTle~Llt~Pv-s~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~aig~~  156 (240)
T TIGR03518        79 LGTLELLLTRPI-SDWQIILGKYLGSLTLVILALLPTLLYVFTIY-QLGNPVGNLDIGSTFGSYIGLLLLGSVYTAIGLF  156 (240)
T ss_pred             cCHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444 8999999999998765443332   1222221 2222   235666666666677777889999999


Q ss_pred             HHHhcCChhhHHHhhhHHHH
Q psy1567         424 ISCISSSVSVALSIGPPVII  443 (463)
Q Consensus       424 i~~~~~~~~~a~~~~~~~~~  443 (463)
                      +|++.+|..+|..++..+..
T Consensus       157 iSsl~~~q~~a~~~~~~~~~  176 (240)
T TIGR03518       157 ASSLTENQIVAFIIAVFLCF  176 (240)
T ss_pred             HHHHhchHHHHHHHHHHHHH
Confidence            99999998887665554433

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=98.13  E-value=0.00013  Score=69.31  Aligned_cols=179  Identities=13%  Similarity=0.194  Sum_probs=115.0

Q ss_pred             hhhhccChhhHHHHHHHHHHHHHHHHHHhcCCC-------CC-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy1567         282 WLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQN-------LD-QDGVMNINGALFICLTNMTFQNVFAVISVFCSELPLF  353 (463)
Q Consensus       282 ~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~-------~~-~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~  353 (463)
                      +......+..........+..+...+..+.+.+       .+ ........|.+.+.............+.. .++++.+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~  120 (286)
T COG0842          42 FQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFR-EREFGTL  120 (286)
T ss_pred             heeeeecccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHh-HHhhCcH
Confidence            444455555555555556666666666655442       11 11122223444444444444333222111 3556666


Q ss_pred             HHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCChh
Q psy1567         354 MREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLIS-CISSSVS  432 (463)
Q Consensus       354 ~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~-~~~~~~~  432 (463)
                      .|=..++. +...+++++.+.......+...+...+..+..|.. ....+.....+..+......++|.+++ ...++.+
T Consensus       121 ~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~  198 (286)
T COG0842         121 ERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQ  198 (286)
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            66666666 55777788888887777777777777777777733 344566666677777778888888666 3556788


Q ss_pred             hHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567         433 VALSIGPPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       433 ~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      .+..+..++..++.+++|.+.|.+.+|+|++
T Consensus       199 ~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~  229 (286)
T COG0842         199 CASAVGNLLILPLGFLSGVFFPLELLPAWLQ  229 (286)
T ss_pred             HHHHHHHHHHHHHHHHccccCchhhhHHHHH
Confidence            8889999999999999999999999999763

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=98.01  E-value=0.00072  Score=61.49  Aligned_cols=156  Identities=19%  Similarity=0.231  Sum_probs=102.3

Q ss_pred             HHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy1567         274 FKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGV-MNINGALFICLTNMTFQNVFAVISVFCSELPL  352 (463)
Q Consensus       274 ~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~-~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~  352 (463)
                      ++.+.||+++.-+|++.....-+...+....++.....   .+.+.. +...|.+..+..+.+..+. +         ..
T Consensus         1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~al~---~~~~~l~~~~~gllWi~~lfa~~l~~-~---------r~   67 (215)
T PF03379_consen    1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFALG---PDPDLLARVAPGLLWIALLFASLLGL-N---------RS   67 (215)
T ss_pred             CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhhcC---CchhHHHHHhHHHHHHHHHHHHHHHh-h---------Hh
Confidence            36789999999999998887777777666666666543   233222 3334555555555444433 1         23


Q ss_pred             HHHHhhCCC--------CchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567         353 FMREHQNGM--------YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLI  424 (463)
Q Consensus       353 ~~rE~~~~~--------y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i  424 (463)
                      +.+|+++|.        .++.+++++|.+.......+..++...+...+.|.+  ...+..+.+.+.+.+.+...+|.+.
T Consensus        68 f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~--~~~~~~~~~~l~lgt~gl~~igtl~  145 (215)
T PF03379_consen   68 FAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLP--ISSWPLLLLSLLLGTLGLAAIGTLL  145 (215)
T ss_pred             HHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            455555554        267889999999998877776666666666676766  4566777778888888888888888


Q ss_pred             HHhcCChhhHHHhhhHHHHH
Q psy1567         425 SCISSSVSVALSIGPPVIIP  444 (463)
Q Consensus       425 ~~~~~~~~~a~~~~~~~~~~  444 (463)
                      +++.-+......+.+++.+|
T Consensus       146 aal~~~~r~~~~Ll~lL~lP  165 (215)
T PF03379_consen  146 AALAAGARGREILLPLLLLP  165 (215)
T ss_pred             HHHHHhccccCHHHHHHHHH
Confidence            87775444444444444443

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.81  E-value=0.0034  Score=58.81  Aligned_cols=183  Identities=9%  Similarity=0.073  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHhhhhhcc-ChhhHHHHHHHHHHHHHHHHHHhcCC-CCC-hh-hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy1567         270 WWTQFKAVLWRSWLSVRK-DPTLMKVRLLQTLMVSIMIGLIYFGQ-NLD-QD-GVMNINGALFICLTNMTFQNVFAVISV  345 (463)
Q Consensus       270 ~~~q~~~l~~R~~~~~~R-~~~~~~~~l~~~~~~~~i~g~~f~~~-~~~-~~-~~~~~~~~lf~~~~~~~~~~~~~~i~~  345 (463)
                      .++....|.+|+.|...| +.-.....++.|+++.++.+.+|... +.+ .+ ...-..|.+.......+.+   .....
T Consensus        16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f~~~~i~---~~~~s   92 (263)
T COG1682          16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFFFSEAIS---EGAGS   92 (263)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH---hHHHH
Confidence            456677888999998544 66677778899999999999988765 221 11 1111123322222222222   22333


Q ss_pred             hhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567         346 FCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLIS  425 (463)
Q Consensus       346 ~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~  425 (463)
                      +......+.|-    ..++..+.+++++.++....+..++.....-+..+.+  ...+........+..+.+.++|..+|
T Consensus        93 ~~~n~~li~k~----~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~a  166 (263)
T COG1682          93 VVANAALIKKI----NFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLILA  166 (263)
T ss_pred             hhhhHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444332    1378999999999999887777766665555554443  34455565666666777788888888


Q ss_pred             HhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccc
Q psy1567         426 CISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVA  461 (463)
Q Consensus       426 ~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~  461 (463)
                      +++.-..=-..+...+..+.+..+|.+-|.+++|.-
T Consensus       167 ~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~  202 (263)
T COG1682         167 SLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQ  202 (263)
T ss_pred             hHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHH
Confidence            887665555667777888889999999999999964

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=97.58  E-value=0.008  Score=56.96  Aligned_cols=172  Identities=14%  Similarity=0.117  Sum_probs=89.1

Q ss_pred             HHHHHhhhhhccChhhHHHHHHHHHH-HHHHHHHHhcCCCCC--h--hhhhhhhHHH--------------HHHHHHHHH
Q psy1567         276 AVLWRSWLSVRKDPTLMKVRLLQTLM-VSIMIGLIYFGQNLD--Q--DGVMNINGAL--------------FICLTNMTF  336 (463)
Q Consensus       276 ~l~~R~~~~~~R~~~~~~~~l~~~~~-~~~i~g~~f~~~~~~--~--~~~~~~~~~l--------------f~~~~~~~~  336 (463)
                      .+.|++++..+|+|.......+..++ ....+-........+  .  .+........              +..... .+
T Consensus         2 ~i~~~E~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l   80 (277)
T PF12679_consen    2 AIAKKEFRELFRSRRFWILLIIFLLLLFILAFYPILQAQAQSQAFQTQELIPALENLQSFNFAESAKFFFSIVSFLG-PL   80 (277)
T ss_pred             hhHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHhhhhhhhhhhHHHHHHHHH-HH
Confidence            57899999999999887777666655 222222222211111  0  0101100000              111111 11


Q ss_pred             HHHHHHHHHhhhhh--hHHHHHhhCCCCchhHHHHHHHHHHHhHHHH---HHHHH-H--HHHHHhcCCcchHHHHHHHHH
Q psy1567         337 QNVFAVISVFCSEL--PLFMREHQNGMYRVDVYFLCKTLAEVPIFLA---IPVIF-T--SVMYYMVHLNPIFSRFLTATL  408 (463)
Q Consensus       337 ~~~~~~i~~~~~er--~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~---~~~i~-~--~i~y~~~g~~~~~~~f~~~~l  408 (463)
                      .+...+...+.+||  +.+. ---+..+++..++++|.+......+.   ..++- .  .......|.+.+...+....+
T Consensus        81 ~~~~l~~~~ia~E~e~gTi~-~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
T PF12679_consen   81 FAIILASDLIAGERERGTIE-LLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLL  159 (277)
T ss_pred             HHHHHHHHHHHhccccCEee-HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            12222233343332  2211 12234468999999999999877432   11111 1  112222444555555554444


Q ss_pred             HHHHHHH---HHHHHHHHHHHhcCChhhHHHhhhHHHHHHHHhh
Q psy1567         409 IITMVST---VATSFGYLISCISSSVSVALSIGPPVIIPFLLFG  449 (463)
Q Consensus       409 ~~~l~~~---~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~s  449 (463)
                      ...+..+   +..+++.++|++.+|...|...+..+.+......
T Consensus       160 ~~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~  203 (277)
T PF12679_consen  160 LFVLLLLAVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLY  203 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHH
Confidence            4444433   5689999999999998888887776665554433

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=97.57  E-value=0.0084  Score=56.39  Aligned_cols=186  Identities=10%  Similarity=0.072  Sum_probs=93.4

Q ss_pred             HHHHHHHHHhhhhhcc-ChhhHHHHHHHHHHHHHHHHHHhcCCCCC-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1567         272 TQFKAVLWRSWLSVRK-DPTLMKVRLLQTLMVSIMIGLIYFGQNLD-QDGVMNINGALFICLTNMTFQNVFAVISVFCSE  349 (463)
Q Consensus       272 ~q~~~l~~R~~~~~~R-~~~~~~~~l~~~~~~~~i~g~~f~~~~~~-~~~~~~~~~~lf~~~~~~~~~~~~~~i~~~~~e  349 (463)
                      +..+.+.+|++|...| ..-.....++.|+++.++++.+|...... ..+   ..+..|..+....+.-...++..-.+-
T Consensus        19 ~li~~L~~rdlk~ry~~s~LG~~W~~l~Pll~~~v~~~vF~~~~~~~~~~---~~~~~fl~~Gl~pw~~fs~~~~~~~~a   95 (264)
T PRK15176         19 ELIILLMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQYLNRSVPIS---TDDISFVIAGILPYLLFRYTITATMRT   95 (264)
T ss_pred             HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455689999998655 46677788999999998888887643211 000   011234443333333221211111100


Q ss_pred             hhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1567         350 LPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMV-HLNPIFSRFLTATLIITMVSTVATSFGYLISCIS  428 (463)
Q Consensus       350 r~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~-g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~  428 (463)
                      ..+..+..--+-....-..++....+....++..++...+.+... +..++.  ........++..+.+.++|.++|++.
T Consensus        96 ~si~~~~~li~kv~~p~~i~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~l~~~~~~ll~~l~~~glglils~l~  173 (264)
T PRK15176         96 HSFSTSLAVVSQVKKRHVIFSLAAIEFVNAVIIYIIISLINFLIFSRWEAQK--PFLIFEGMVIAWLLGLSFGYFCDALS  173 (264)
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011111111111123333344444444333333333222222222 333222  23333333445555667777776665


Q ss_pred             CChhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567         429 SSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI  462 (463)
Q Consensus       429 ~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l  462 (463)
                      .-..-...+..++..+.+..||.+-|.+.+|+++
T Consensus       174 v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~  207 (264)
T PRK15176        174 ERFPLVYKAVPVMLRPMFLISAVFYTANELPYSL  207 (264)
T ss_pred             HhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHH
Confidence            4433344556677788889999999999999864

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=97.50  E-value=2.6e-05  Score=76.08  Aligned_cols=112  Identities=23%  Similarity=0.279  Sum_probs=0.0

Q ss_pred             Hhhhhh--hHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHHHHH
Q psy1567         345 VFCSEL--PLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVH---LNPIFSRFLTATLIITMVSTVATS  419 (463)
Q Consensus       345 ~~~~er--~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g---~~~~~~~f~~~~l~~~l~~~~~~~  419 (463)
                      ...+||  ++..|-+.+|. +...|+++|.+......+++.++..++   ..|   ++..  +++..++..++..++..+
T Consensus       181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~  254 (344)
T PF12698_consen  181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFIS  254 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHH
Confidence            334444  44555556665 999999999999999999988877774   444   4433  566677888888999999


Q ss_pred             HHHHHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567         420 FGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI  462 (463)
Q Consensus       420 lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l  462 (463)
                      ++.+++.++++...+..+++++.++++.++|...|.+++|+++
T Consensus       255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (344)
T PF12698_consen  255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFL  297 (344)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Confidence            9999999999999999998888888888888888888888775

>TIGR01190 ccmB heme exporter protein CcmB

Probab=97.31  E-value=0.025  Score=50.93  Aligned_cols=152  Identities=12%  Similarity=0.130  Sum_probs=98.1

Q ss_pred             HHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhh-hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy1567         278 LWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNI-NGALFICLTNMTFQNVFAVISVFCSELPLFMRE  356 (463)
Q Consensus       278 ~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~-~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE  356 (463)
                      .+|+++.-+|++.....-++..++...++..-+.   .|.+..+.. .|++..+..+....+.          ...|.+|
T Consensus         2 ~~kDl~l~~r~~~~~~~~llF~l~vi~lf~la~g---p~~~~l~~~apgilWva~lfa~ll~l----------~rlF~~d   68 (211)
T TIGR01190         2 IRRDLRLAFRAGGGILNPLWFFLIVVTLFPFGVG---PELKLLSRIAPGIVWVGALLSSLLSL----------DRLFRDD   68 (211)
T ss_pred             cHHHHHHHHcccchHHHHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHH
Confidence            5899999999988876666666655555554443   343333333 3555555555444433          2244555


Q ss_pred             hhCCC--------CchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1567         357 HQNGM--------YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCIS  428 (463)
Q Consensus       357 ~~~~~--------y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~  428 (463)
                      +++|.        .+....+++|.+.......+.-++.....-.+.|.+.  .....+.+.+.+.+.....+|.+.+++.
T Consensus        69 ~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt  146 (211)
T TIGR01190        69 FEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALT  146 (211)
T ss_pred             HhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554        3789999999999987766666666666666777764  3346677788888888888888888887


Q ss_pred             CChhhHHHhhhHHHHH
Q psy1567         429 SSVSVALSIGPPVIIP  444 (463)
Q Consensus       429 ~~~~~a~~~~~~~~~~  444 (463)
                      -+....-.+.+++.+|
T Consensus       147 ~g~r~~~~Ll~lL~lP  162 (211)
T TIGR01190       147 VGLKRGGLLLSLLVLP  162 (211)
T ss_pred             HhccCCchHHHHHHHH
Confidence            5544433444444444

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=97.02  E-value=0.035  Score=50.16  Aligned_cols=192  Identities=10%  Similarity=0.093  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChh-----hhhhhhHHHHHHHHHHHHHHHHHHH
Q psy1567         269 NWWTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQD-----GVMNINGALFICLTNMTFQNVFAVI  343 (463)
Q Consensus       269 s~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~-----~~~~~~~~lf~~~~~~~~~~~~~~i  343 (463)
                      ++++..+.+.+-.++...-.+...+.-.+...+-+++.+.++..+-++.+     ...+.....+.+.+.......   -
T Consensus         3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~---~   79 (268)
T COG4587           3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTV---W   79 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHH---H
Confidence            57888888888888887777777777777777777777777765522222     112222333333222222222   2


Q ss_pred             HHhhhhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHH---HHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHH
Q psy1567         344 SVFCSELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIP---VIFTSVMYYMVHL----NPIFSRFLTATLIITMVSTV  416 (463)
Q Consensus       344 ~~~~~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~---~i~~~i~y~~~g~----~~~~~~f~~~~l~~~l~~~~  416 (463)
                      ....-|+++-.-|.....-+|..|.......+.+......   .+-.+..|.+.+-    ..+......+.+...+....
T Consensus        80 ~~~ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~  159 (268)
T COG4587          80 SIWEFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLL  159 (268)
T ss_pred             HHHHHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHH
Confidence            2222334454444444444555565555555554433332   2222223333222    12334444444444443334


Q ss_pred             HHHHHHHHHHhcCChhhHHHhhhHHHHHHHHhhhccccCCCcccccC
Q psy1567         417 ATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       417 ~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      -......+++.+--.+-|+.+.-..-..-.++||..+|++-.|+|++
T Consensus       160 ~F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~~v~  206 (268)
T COG4587         160 RFLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPDWVR  206 (268)
T ss_pred             HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChHHHH
Confidence            44455555555545577788888888888999999999999999864

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=96.88  E-value=0.037  Score=51.80  Aligned_cols=124  Identities=15%  Similarity=0.182  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCC-CCC---c-cccchh-----hhHHHHHHHHHHHHHHH
Q psy1567         102 WTQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQ-NLD---Q-DGVMNI-----NGALFICLTNMTFQNVF  171 (463)
Q Consensus       102 ~~q~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~-~~~---~-~~~~~~-----~g~~f~~~~~~~~~~~~  171 (463)
                      ++++..+.+|.++...|||..+..-+++.++.-+++|.+|... +.+   + .+..+.     .|++-+......+.   
T Consensus         1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~---   77 (253)
T TIGR03861         1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ---   77 (253)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence            3678999999999999999999999999999999999998553 211   0 010111     12221212221111   


Q ss_pred             HHHHHhhhh--hhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchh
Q psy1567         172 AVISVFCSE--LPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF  231 (463)
Q Consensus       172 ~~i~~f~~e--r~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~  231 (463)
                      ++. ....|  +..+.+=+.... +...+.++|.+.+....+++.++...+.+. .|.+.+.
T Consensus        78 ~~~-~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~  136 (253)
T TIGR03861        78 SSL-SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPV  136 (253)
T ss_pred             hhh-HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCc
Confidence            221 12233  335555555555 777899999999988888877666555543 3665543

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=96.70  E-value=0.048  Score=50.41  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=73.1

Q ss_pred             HhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCC-CC--ccccchh----hhHHHHHHHHHHHHHHHHHHHH-hhhhhh
Q psy1567         111 RSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQN-LD--QDGVMNI----NGALFICLTNMTFQNVFAVISV-FCSELP  182 (463)
Q Consensus       111 R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~-~~--~~~~~~~----~g~~f~~~~~~~~~~~~~~i~~-f~~er~  182 (463)
                      |+++...|||.....-+++.++..+++|..+-+.- .+  +.+....    .|++.+.....+..   .+... .-+|+.
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~---~~~~~~~~~~~g   77 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF---SGISVIWDRQFG   77 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHhC
Confidence            77888999999999999999999999999876542 11  1222111    12222222222222   11111 112333


Q ss_pred             HHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccc
Q psy1567         183 LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNP  229 (463)
Q Consensus       183 i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~  229 (463)
                      .++|=+.... +...|+++|.+.+.+..++..++...+.+++.+.+.
T Consensus        78 ~~~~~~~~P~-~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~  123 (236)
T TIGR01247        78 FLKEILVAPA-SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP  123 (236)
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3333333333 678999999999999999999999999988877554

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=96.68  E-value=0.42  Score=44.56  Aligned_cols=158  Identities=14%  Similarity=0.109  Sum_probs=88.1

Q ss_pred             HHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy1567         278 LWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGV-MNINGALFICLTNMTFQNVFAVISVFCSELPLFMRE  356 (463)
Q Consensus       278 ~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~-~~~~~~lf~~~~~~~~~~~~~~i~~~~~er~~~~rE  356 (463)
                      .+-+++...|.+.... .++.|++..++....+.+.+.++... ......  ..+......+.......-.+|+..-.|.
T Consensus         3 l~aE~lK~Krt~~~~l-~l~~Pl~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~~i~i~~~~~~~~E~~~~~~k~   79 (248)
T TIGR03733         3 LKSDFIKLKRTSILWI-HICAPILGSLLFLLYYSFRGLDNIDIIEGYFQV--LAIVLPLLIGIVCGMVVEQEESAGNFKN   79 (248)
T ss_pred             HHHHHHHHcchhHHHH-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence            4556677777765555 88888877777654333333222111 111111  1111122222222222223333344555


Q ss_pred             hhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHH-----HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q psy1567         357 HQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMY-----YMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSV  431 (463)
Q Consensus       357 ~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y-----~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~  431 (463)
                      ..+...+...+++||.+.-+...++..++...+..     ...+-+.+...++...+.++++++....++..++....+ 
T Consensus        80 ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~-  158 (248)
T TIGR03733        80 LLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGM-  158 (248)
T ss_pred             HhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence            55555688999999999887776665554322222     111223355677788888899999999999999999875 


Q ss_pred             hhHHHhhh
Q psy1567         432 SVALSIGP  439 (463)
Q Consensus       432 ~~a~~~~~  439 (463)
                      ..+..++.
T Consensus       159 ~~si~ig~  166 (248)
T TIGR03733       159 GASIGIGI  166 (248)
T ss_pred             chhHHHHH
Confidence            34444444

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=96.17  E-value=0.91  Score=40.77  Aligned_cols=86  Identities=16%  Similarity=0.192  Sum_probs=51.0

Q ss_pred             CchhHHHHHHHHHHHhHHHHHHHHHHHHH---HHhcCC-cchHH---H-HHHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Q psy1567         362 YRVDVYFLCKTLAEVPIFLAIPVIFTSVM---YYMVHL-NPIFS---R-FLTATLIITMVSTVATSFGYLISCISSSVSV  433 (463)
Q Consensus       362 y~~~~y~la~~~~~l~~~~~~~~i~~~i~---y~~~g~-~~~~~---~-f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~  433 (463)
                      .++..++.+|.++.....++..++...+.   ..+.+. +.+..   + ...+.+..++.......+ .+++...+|...
T Consensus        87 ~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~  165 (232)
T PF12730_consen   87 ISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLFISLL-LFISSLFRNSIV  165 (232)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH
Confidence            47999999999999877666665543332   233332 22322   2 223444444444455555 888999998777


Q ss_pred             HHHhhhHHHHHHHHh
Q psy1567         434 ALSIGPPVIIPFLLF  448 (463)
Q Consensus       434 a~~~~~~~~~~~~l~  448 (463)
                      +..++.+......+.
T Consensus       166 ~i~~~~~~~~~~~~~  180 (232)
T PF12730_consen  166 AIIISILLFLLGIIL  180 (232)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            766555555444433

>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.9  Score=40.22  Aligned_cols=155  Identities=15%  Similarity=0.142  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhh-hHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1567         272 TQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNI-NGALFICLTNMTFQNVFAVISVFCSEL  350 (463)
Q Consensus       272 ~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~~~~~~~~~~~~~-~~~lf~~~~~~~~~~~~~~i~~~~~er  350 (463)
                      ..+..+.+|++|.-+|.+.....-+........++..-+   |+|.+-.... -|++.......+..+.          .
T Consensus         2 ~~~~~l~~rdLrl~~R~~~~~~~~l~F~l~Vi~lfp~~v---Gpd~~~la~iaPgilWia~lLA~lL~l----------~   68 (221)
T COG2386           2 MAFLALFKRDLRLEFRAKAGILNPLLFFLLVITLFPLAV---GPDPQLLARIAPGILWIAALLASLLGL----------E   68 (221)
T ss_pred             hhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcccc---CCchhHHHHhcchHHHHHHHHHHHHhH----------H
Confidence            346779999999999988877655555554444444433   3443322222 3555555444433322          2


Q ss_pred             hHHHHHhhCCCC--------chhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567         351 PLFMREHQNGMY--------RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGY  422 (463)
Q Consensus       351 ~~~~rE~~~~~y--------~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~  422 (463)
                      ..|++|+.+|.-        ....-+++|+++......+--++..-+.+.+.|++  ...+....+...+.+-....+|.
T Consensus        69 rlF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~ga  146 (221)
T COG2386          69 RLFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLGA  146 (221)
T ss_pred             HHHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHHH
Confidence            356777777764        46778899999998888888888888888888887  45577777777777777777777


Q ss_pred             HHHHhcCChhhHHHhhhHH
Q psy1567         423 LISCISSSVSVALSIGPPV  441 (463)
Q Consensus       423 ~i~~~~~~~~~a~~~~~~~  441 (463)
                      ..+++.-+....-.+.+++
T Consensus       147 ~gaALtv~lrrgglLl~vl  165 (221)
T COG2386         147 VGAALTVGLRRGGLLLSVL  165 (221)
T ss_pred             HHHHHHhcCccCCchhhHH
Confidence            7776664444433333333

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=95.88  E-value=1.1  Score=42.27  Aligned_cols=179  Identities=14%  Similarity=0.079  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhhhhhccChhhHHHHHHHHHHHHHHHHHHhc---CC-----CCChhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy1567         272 TQFKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYF---GQ-----NLDQDGVMNINGALFICLTNMTFQNVFAVI  343 (463)
Q Consensus       272 ~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~~i~g~~f~---~~-----~~~~~~~~~~~~~lf~~~~~~~~~~~~~~i  343 (463)
                      ++...+.+++++...|+|.........-+..++.+...+.   ..     +.+.... ................+...+.
T Consensus         2 ~~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~   80 (278)
T COG1277           2 SNILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLL-FLSSVSLVFSFFLPLLAILLGA   80 (278)
T ss_pred             chhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhh-hhhhHHHHHHHHHHHHHHHHcc
Confidence            3578899999999999998887777555555555544442   11     1111111 0100010111111111111222


Q ss_pred             HHhhhhhh-HHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHH---HHHHHhcCCcc---hHHHHHHHHHHHHHHHHH
Q psy1567         344 SVFCSELP-LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFT---SVMYYMVHLNP---IFSRFLTATLIITMVSTV  416 (463)
Q Consensus       344 ~~~~~er~-~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~---~i~y~~~g~~~---~~~~f~~~~l~~~l~~~~  416 (463)
                      ..+.+|++ .-.+---+...+++--+.+|.+..+....+..++..   .......|...   +......+.....+...+
T Consensus        81 ~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (278)
T COG1277          81 DLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLV  160 (278)
T ss_pred             chhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence            22322221 112223344568899999999998877666665555   23444455443   334567888888888888


Q ss_pred             HHHHHHHHHHhcCChhhHHHhhhHHHHHHHHhhhc
Q psy1567         417 ATSFGYLISCISSSVSVALSIGPPVIIPFLLFGGF  451 (463)
Q Consensus       417 ~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~  451 (463)
                      ..+++.++++..++...+..++..+.+...+..+.
T Consensus       161 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (278)
T COG1277         161 LLSISLLISSLFSSSSLALLVSIILLLLFIIAFSL  195 (278)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888777666665554443

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=95.48  E-value=0.73  Score=43.07  Aligned_cols=119  Identities=16%  Similarity=0.069  Sum_probs=71.5

Q ss_pred             HHHHHHHhhHhhccC-hhHHHHHHHHHHHHHHHHHHHHhCCCCCccccchhh-----hHHHHHHHHHHHHHHHHHH-HHh
Q psy1567         105 FKAVLWRSWLSVRKD-PTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMNIN-----GALFICLTNMTFQNVFAVI-SVF  177 (463)
Q Consensus       105 ~~~L~~R~~~~~~Rn-~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~~~-----g~~f~~~~~~~~~~~~~~i-~~f  177 (463)
                      ...+.+|+++..+|+ |......+++.++.-+++|..+-....+..+. +..     |++-+..+..+   ..+.. ..+
T Consensus         7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~-~y~~f~~pg~l~~~~~~~~---~~~~~~~~~   82 (253)
T TIGR01291         7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV-SYAAFLAAGMVATSAMTAS---TFETIYATF   82 (253)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-CHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            556779999999999 99998889999988899998876542221221 221     22212112111   11111 122


Q ss_pred             hh--hhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccc
Q psy1567         178 CS--ELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNP  229 (463)
Q Consensus       178 ~~--er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~  229 (463)
                      .+  |+..++|-+..-. +...+.++|.+.+.-..++..++...+.+.+ |..+
T Consensus        83 ~~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~  134 (253)
T TIGR01291        83 ARMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIE  134 (253)
T ss_pred             HHHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhch
Confidence            22  3334444444444 7789999999999887777777665555443 4433

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=94.10  E-value=2  Score=39.43  Aligned_cols=109  Identities=9%  Similarity=0.055  Sum_probs=65.7

Q ss_pred             ccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccch-hhhHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHhhcCCCc
Q psy1567         117 RKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN-INGALFICLTNMTFQNVFAVISVFCSELP--LFMREHQNGMY  193 (463)
Q Consensus       117 ~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~-~~g~~f~~~~~~~~~~~~~~i~~f~~er~--i~~rE~~~g~Y  193 (463)
                      +|||.....-+.+.+++-++.+.++-+-. +.+..+. ..+.+-......+..   ..-....+||+  .+.|=+.... 
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~er~~G~l~rl~~~P~-   76 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFT---GQAIAVARDRRYGALKRLGATPL-   76 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHhCHHHHHhcCCC-
Confidence            69999999999988888777777776521 1222221 223222222222222   11223344443  4555555544 


Q ss_pred             chhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchh
Q psy1567         194 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIF  231 (463)
Q Consensus       194 ~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~  231 (463)
                      +...|+++|.+...+..++...+.. ++++..|.+...
T Consensus        77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~  113 (232)
T TIGR00025        77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAG  113 (232)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCC
Confidence            7899999999988888776655554 556677888654

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PRK15066 inner membrane transport permease; Provisional

Probab=93.06  E-value=7  Score=36.49  Aligned_cols=126  Identities=13%  Similarity=0.162  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHhhHhhccChhH-HHHHHHHHHHHHHHHHHHHhCCCCCcccc--chhh--hHHHHHHHHHHHHHHHHHHH
Q psy1567         101 WWTQFKAVLWRSWLSVRKDPTL-MKVRLLQTLMVSIMIGLIYFGQNLDQDGV--MNIN--GALFICLTNMTFQNVFAVIS  175 (463)
Q Consensus       101 ~~~q~~~L~~R~~~~~~Rn~~~-~~~r~~~~~~~ali~g~~f~~~~~~~~~~--~~~~--g~~f~~~~~~~~~~~~~~i~  175 (463)
                      .++-++.+.+|.++...||+.. ...-+++..+..+++|..+-....+..+.  ....  |++-+.....+..   .+..
T Consensus         6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~---~~~~   82 (257)
T PRK15066          6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYS---NVAS   82 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            4788999999999999999865 33445555566666676653211111111  1111  3322222222222   2222


Q ss_pred             Hhhhhhh--HHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccch
Q psy1567         176 VFCSELP--LFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPI  230 (463)
Q Consensus       176 ~f~~er~--i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~  230 (463)
                      .+.+||.  ..+|=+.... +...+.+++.+...-..++..++...+.+...|.+..
T Consensus        83 ~i~~~~~~~~~~~l~vtp~-~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~  138 (257)
T PRK15066         83 SFFSAKFQRNIEELLVSPV-PNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH  138 (257)
T ss_pred             HHHHHHHhhhHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence            3333331  1222222333 7778899999988777777766666665555466643

>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function

Probab=92.40  E-value=4.5  Score=37.05  Aligned_cols=99  Identities=14%  Similarity=0.107  Sum_probs=65.2

Q ss_pred             CchhHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhhhH
Q psy1567         362 YRVDVYFLCKTLAE-VPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIGPP  440 (463)
Q Consensus       362 y~~~~y~la~~~~~-l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~  440 (463)
                      ++...+.+.+-+.. ....++.+++..+......+.+.++.+++.+.+.+.+......++...+++++=-......+.  
T Consensus        71 v~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~--  148 (229)
T PF06182_consen   71 VNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFIIGLLAFWFTESWGLS--  148 (229)
T ss_pred             CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence            35666666655554 333444444444444445677778888988888888888888888888887753333333332  


Q ss_pred             HHHHHHHhhhccccCCCcccccC
Q psy1567         441 VIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       441 ~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                       .+...+++|...|.+-.|+|++
T Consensus       149 -~i~~~l~sg~~~Pl~~fp~~~~  170 (229)
T PF06182_consen  149 -YIFYSLLSGAIYPLSIFPGWIQ  170 (229)
T ss_pred             -HHHHHHHHHHHccHHHhHHHHH
Confidence             3445559999999999998864

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=91.95  E-value=7  Score=39.34  Aligned_cols=94  Identities=11%  Similarity=0.111  Sum_probs=63.1

Q ss_pred             hhhhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHH---------HhcC--CcchHHHHHHHHHHHHHHHHH
Q psy1567         348 SELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMY---------YMVH--LNPIFSRFLTATLIITMVSTV  416 (463)
Q Consensus       348 ~er~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y---------~~~g--~~~~~~~f~~~~l~~~l~~~~  416 (463)
                      +||.++.-=-.++. ++..+..||++.-....+.+..++.+..+         ...+  ++..+..+..+.+.+.+....
T Consensus       214 Ke~rtlE~LLssPv-Sr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l  292 (407)
T COG1668         214 KERRTLEVLLSSPV-SRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLL  292 (407)
T ss_pred             hhhchhhhhhccCc-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHH
Confidence            34444443334444 89999999999999999999777777662         1111  223344455666666665555


Q ss_pred             H-HHHHHHHHHhcCChhhHHHhhhHHH
Q psy1567         417 A-TSFGYLISCISSSVSVALSIGPPVI  442 (463)
Q Consensus       417 ~-~~lg~~i~~~~~~~~~a~~~~~~~~  442 (463)
                      + .+++.++++.+++.+-|+....++.
T Consensus       293 ~~~~l~a~l~~~a~~~k~aq~~~~p~~  319 (407)
T COG1668         293 LYAALAAFLGAMAGSIKEAQTLISPLT  319 (407)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHhhHHH
Confidence            4 4489999999999888888877333

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=91.94  E-value=9.5  Score=34.64  Aligned_cols=123  Identities=20%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             HHHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCCCCCccccch-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q psy1567         105 FKAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQNLDQDGVMN-INGALFICLTNMTFQNVFAVISVFCSELPL  183 (463)
Q Consensus       105 ~~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~~~~~~~~~~-~~g~~f~~~~~~~~~~~~~~i~~f~~er~i  183 (463)
                      ++.+.||.++.-+|++.....-+......-.+..   +-++.+++...+ ..|++..+..+.+..+         .+| .
T Consensus         1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~---~al~~~~~~l~~~~~gllWi~~lfa~~l~---------~~r-~   67 (215)
T PF03379_consen    1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFS---FALGPDPDLLARVAPGLLWIALLFASLLG---------LNR-S   67 (215)
T ss_pred             CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH---hhcCCchhHHHHHhHHHHHHHHHHHHHHH---------hhH-h
Confidence            4689999999999999877555554444444443   345544433232 2333322222222221         122 2


Q ss_pred             HHHhhcCCC--------cchhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH
Q psy1567         184 FMREHQNGM--------YRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIIT  242 (463)
Q Consensus       184 ~~rE~~~g~--------Y~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l~  242 (463)
                      |.+|+++|.        .+....+++|.+...-...+..++...+...+-|.+.+  ....+.+.+.
T Consensus        68 f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~~--~~~~~~~~l~  132 (215)
T PF03379_consen   68 FAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPIS--SWPLLLLSLL  132 (215)
T ss_pred             HHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--HHHHHHHHHH
Confidence            666666655        13567899999999877777777766666666677653  3444444433

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=91.72  E-value=5.1  Score=48.58  Aligned_cols=105  Identities=17%  Similarity=0.136  Sum_probs=75.5

Q ss_pred             HHHHHhhhhhhHHHHHh--hCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q psy1567         341 AVISVFCSELPLFMREH--QNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMVSTVAT  418 (463)
Q Consensus       341 ~~i~~~~~er~~~~rE~--~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~~~~~f~~~~l~~~l~~~~~~  418 (463)
                      ..+..+..||+.=.||.  -.|+ +.+.|++++.+..+...++.+++.+++...  +--.....++..++.+++..+...
T Consensus       669 ~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~~--~~~~~~s~~~~lfl~~~~y~~s~I  745 (2272)
T TIGR01257       669 MTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIMH--GRILHYSDPFILFLFLLAFSTATI  745 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CceeecCChHHHHHHHHHHHHHHH
Confidence            45566777887777774  4566 789999999999887777766555554322  211122345666677777788889


Q ss_pred             HHHHHHHHhcCChhhHHHhhhHHHHHHHHh
Q psy1567         419 SFGYLISCISSSVSVALSIGPPVIIPFLLF  448 (463)
Q Consensus       419 ~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~  448 (463)
                      .++.++++++.+...|..+++++.+.+.+.
T Consensus       746 ~~~fliS~fFska~~A~~~~~li~f~~~lp  775 (2272)
T TIGR01257       746 MQCFLLSTFFSKASLAAACSGVIYFTLYLP  775 (2272)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888776543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=90.32  E-value=4.7  Score=48.90  Aligned_cols=96  Identities=9%  Similarity=0.040  Sum_probs=70.4

Q ss_pred             HHhhhhhhHHHH--HhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHHHH
Q psy1567         344 SVFCSELPLFMR--EHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMV--HLNPIFSRFLTATLIITMVSTVATS  419 (463)
Q Consensus       344 ~~~~~er~~~~r--E~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~--g~~~~~~~f~~~~l~~~l~~~~~~~  419 (463)
                      .....||..=.|  ..-+|. ++.+|.++..+.|+..-++..+++.++.+..-  ++. +...+...++++++.+++...
T Consensus      1699 ~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip 1776 (2272)
T TIGR01257      1699 LYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIP 1776 (2272)
T ss_pred             eeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHH
Confidence            334566665433  456777 99999999999999888887777776665432  122 334566677788888999999


Q ss_pred             HHHHHHHhcCChhhHHHhhhHH
Q psy1567         420 FGYLISCISSSVSVALSIGPPV  441 (463)
Q Consensus       420 lg~~i~~~~~~~~~a~~~~~~~  441 (463)
                      +..+++.++++...|....+++
T Consensus      1777 ~tYl~SflF~~~~~A~~~~~~i 1798 (2272)
T TIGR01257      1777 MMYPASFLFDVPSTAYVALSCA 1798 (2272)
T ss_pred             HHHHHHHhhCCchhHHHHHHHH
Confidence            9999999999988887654433

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=88.69  E-value=20  Score=33.15  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             HHHHHHhhHhhccChhHHHHHHHHHHHHHHHHHHHHhCC----CCCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy1567         106 KAVLWRSWLSVRKDPTLMKVRLLQTLMVSIMIGLIYFGQ----NLDQDGVMNINGALFICLTNMTFQNVFAVISVFCSEL  181 (463)
Q Consensus       106 ~~L~~R~~~~~~Rn~~~~~~r~~~~~~~ali~g~~f~~~----~~~~~~~~~~~g~~f~~~~~~~~~~~~~~i~~f~~er  181 (463)
                      +.+.||.++...|+|..+..-.+...+.|+.. ..+.+.    ..+.++.+.-.+.   ......+....-++..+.+||
T Consensus         2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~---~~~~~~~~~p~l~~~~ia~Er   77 (240)
T TIGR03518         2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSL---APWVFLFLIPAITMRSFAEER   77 (240)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999977777666666442 222111    1122222222221   111111111112334444444


Q ss_pred             hHHHHh--hcCCCcchhHHHHHHHhHHhhHHHH
Q psy1567         182 PLFMRE--HQNGMYRVDVYFLCKTLAEVPIFLA  212 (463)
Q Consensus       182 ~i~~rE--~~~g~Y~~~~Y~~a~~~~~~p~~~~  212 (463)
                      +-=.-|  ..... +...+.++|.++-.....+
T Consensus        78 ~~GTle~Llt~Pv-s~~~ivlgK~l~~~~~~~~  109 (240)
T TIGR03518        78 KLGTLELLLTRPI-SDWQIILGKYLGSLTLVIL  109 (240)
T ss_pred             HcCHHHHHHhCCC-ChHHHHHHHHHHHHHHHHH
Confidence            322222  22222 5578899999988655443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=85.73  E-value=5.9  Score=35.52  Aligned_cols=50  Identities=18%  Similarity=0.074  Sum_probs=40.3

Q ss_pred             chhHHHHHHHhHHhhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHH
Q psy1567         194 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNPIFSRFLTATLIITMAK  245 (463)
Q Consensus       194 ~~~~Y~~a~~~~~~p~~~~~~~v~~~i~Y~~~gl~~~~~~f~~f~l~l~l~~  245 (463)
                      +.+.++++|.+...+..++++++...+.|++.|++++  ++..+++++++..
T Consensus        58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~  107 (208)
T TIGR03062        58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTS  107 (208)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHH
Confidence            5567899999999999999999999999999999874  4555555554443

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=85.39  E-value=16  Score=36.51  Aligned_cols=97  Identities=7%  Similarity=0.034  Sum_probs=63.6

Q ss_pred             chhHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcc--hH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHhh
Q psy1567         363 RVDVYFLCKTLAEVPIFLAIPVIFTSVMYYMVHLNP--IF--SRFLTATLIITMVSTVATSFGYLISCISSSVSVALSIG  438 (463)
Q Consensus       363 ~~~~y~la~~~~~l~~~~~~~~i~~~i~y~~~g~~~--~~--~~f~~~~l~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~  438 (463)
                      ++..+++-|.+......++.++.++.+. +..+.+.  ..  +.|+.+|...++...+.....-.+.++.+.  .-..+.
T Consensus       240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~--~~~~~~  316 (382)
T PF12051_consen  240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGP--PFMPFW  316 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHH
Confidence            8889999999999999999999999998 5556554  22  458888888777655544433333344322  223344


Q ss_pred             hHHHHHHHHhhhccccCCCcccccC
Q psy1567         439 PPVIIPFLLFGGFFLNAGLMGVAIF  463 (463)
Q Consensus       439 ~~~~~~~~l~sG~~i~~~~lP~~l~  463 (463)
                      .+..+...+-+ -+.|.+-.|+..|
T Consensus       317 ll~wvi~nv~~-~~~P~el~p~fyr  340 (382)
T PF12051_consen  317 LLFWVILNVSS-TFYPLELSPGFYR  340 (382)
T ss_pred             HHHHHHHhccc-ccCChhhCccHHH
Confidence            44444444455 5568888887654

It is found in bacterial and eukaryotic proteins.

>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]

Probab=82.23  E-value=57  Score=32.61  Aligned_cols=171  Identities=9%  Similarity=-0.007  Sum_probs=84.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHhcCCCC----Ch--hhhhh-----------hhHHHHHHHHH-HHHHHHHHHHHHhhhh
Q psy1567         288 DPTLMKVRLLQTLMVSIMIGLIYFGQNL----DQ--DGVMN-----------INGALFICLTN-MTFQNVFAVISVFCSE  349 (463)
Q Consensus       288 ~~~~~~~~l~~~~~~~~i~g~~f~~~~~----~~--~~~~~-----------~~~~lf~~~~~-~~~~~~~~~i~~~~~e  349 (463)
                      ++..++.-.+...+.+++.|.+|.+.++    |.  .++..           -...+|.++.+ ........++....+|
T Consensus       296 ~Rg~lI~W~v~~fllglvygs~fg~l~~fL~~n~avrqave~~e~ag~le~~Flv~lfsIisil~a~~~V~~vlkl~geE  375 (536)
T COG3559         296 NRGSLILWTVGLFLLGLVYGSVFGGLGDFLGDNTAVRQAVERMEGAGALEQAFLVLLFSIISILAAAFAVSLVLKLHGEE  375 (536)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            4455555566667788999999987632    21  11111           11222222211 1222223444455677


Q ss_pred             hhHHHHHhhCCCCchhHHHHHHHHHHHhHHHHHHHHHHHH---HHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1567         350 LPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVIFTSV---MYYMVHLN--PIFSRFLTATLIITMVSTVATSFGYLI  424 (463)
Q Consensus       350 r~~~~rE~~~~~y~~~~y~la~~~~~l~~~~~~~~i~~~i---~y~~~g~~--~~~~~f~~~~l~~~l~~~~~~~lg~~i  424 (463)
                      |+.-.....++-.+.+..+.+.....+....+..++....   .|.|.+-+  .+......--++.....+...++...+
T Consensus       376 r~nr~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v~sgl~~lvav~f~l~ia~ll  455 (536)
T COG3559         376 RGNRAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVVGSGLVQLVAVWFLLAIAVLL  455 (536)
T ss_pred             hcchHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            7766665556666766666665555554444444433333   33322221  122223333334444445555566666


Q ss_pred             HHhcCChhhHHHhhhHHHHHHHHhhhccccCCCccccc
Q psy1567         425 SCISSSVSVALSIGPPVIIPFLLFGGFFLNAGLMGVAI  462 (463)
Q Consensus       425 ~~~~~~~~~a~~~~~~~~~~~~l~sG~~i~~~~lP~~l  462 (463)
                      .-+.|...--.-+.-+.......++|.    -++|+|+
T Consensus       456 ~GLaPr~t~laWlyl~~~~fvtyLg~L----lslpewl  489 (536)
T COG3559         456 FGLAPRFTPLAWLYLIVGFFVTYLGGL----LSLPEWL  489 (536)
T ss_pred             hccchhhhhhHHHHHHHHHHHHHHHHh----cccHHHH
Confidence            666676544444444455555556663    3667664

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=81.45  E-value=45  Score=30.88  Aligned_cols=38  Identities=11%  Similarity=-0.086  Sum_probs=24.0

Q ss_pred             hhhhHHHHhhcCCCcchhHHHHHHHhHHhhHHHHHHHH
Q psy1567         179 SELPLFMREHQNGMYRVDVYFLCKTLAEVPIFLAIPVI  216 (463)
Q Consensus       179 ~er~i~~rE~~~g~Y~~~~Y~~a~~~~~~p~~~~~~~v  216 (463)
                      ||+.--.|.-.+.-.+...+++||.+.-.-..++..++
T Consensus        71 E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l  108 (248)
T TIGR03733        71 EESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFL  108 (248)
T ss_pred             HHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444566789999999877776665554

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00