Psyllid ID: psy15724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360
Protein Sequence
MESWKVCFELFKSVHLHTVKMDCTTEQNLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGPKEKLDHVKQTEGEDVHYDCFENEESIDVSSEDTSEIIVEPRTITDDSEYSSISYEYDY
Secondary Structure (PSIPRED)
cccccHHHHHcccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccEEEEcccHHHHcccccccccccEEEEEEEEEEEccccEEEEEccccccccccHHHcccccccccccccccccHHHHHHHHcccccEEEEEccccccEEEccccccHHHHHcccEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcHHHHHHcEEcccccccccccccccHHHccHcHHccccccccccccccccEccHHHHHHHHHHccccccccccEEEcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccEEEEccccccccccccccccccEEEEEEEEEEcccccEEEEcccccccHHHHHHHHHccccccccccHHHHHHHHHHcccccccEEEEEEEcccccEEEccccccHHHHHcccEEEEccEEEEEEccccccEEEEccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MESWKVCFELFKSVHLHtvkmdctteqnlppevekkvsrlgdcevcaiepakytcpkcelktcclncvnihkrelecdgirnkvkfiplqkfsnlelqndfNLLEEVSNSlfkykrdpvknsvsmynklphplhILRKYAYMRKTQVKFLPKLFTQhkintscvyknnlYWRVEWVFVSgnlkhvdeklidstrlcipltahldqpdlafykaadqpdlAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLknkciiefpIFYVIFNYekdmfdieytdvgeakdpriqshsqiengpkekldhvkqtegedvhydcfeneesidvssedtseiiveprtitddseyssisyeydy
Flexible Loop (DISEMBL)
MESWKVCFELFKsvhlhtvkmdctteqnlppevekKVSRLGDCEVCAIEpakytcpkcelKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIFYVIFNYEKDMFDIEYTDVGeakdpriqshsqiengpkeklDHVKQTEGEDVHYDCFENeesidvssedtseiiveprtitddseyssisyeydy
Low Complexity Region (SEG)
MESWKVCFELFKSVHLHTVKMDCTTEQNLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGPKEKLDHVKQTEGEDVHYDCFENEESIDVSSEDTSEIIVEPRtitddseyssisyeydy
Disordered region (IsUnstruct)
***WKVCFELFKSVHLHTVKMDCTTEQNLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIFYVIFNYEKDMFDIEYTDV************************************C***************************************
Disordered Region (DISOPRED)
***WKVCFELFK*******************************EVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVS****************************RKYAYMRKTQVKFLPKLFT********VYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLD*****************YKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIFYVIFNYEKDMFD**************************************************************************SI*YEYDY
Disordered Region (DISEMBL)
MESWKVCFELFKSVHLHTVKMDCTTEQNLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGPKEKLDHVKQTEGEDVHYDCFENEES*********EIIVEPRTITDDSEYSSISYEYDY
Disordered Region (DISPRO)
**SWKVCFELFKSVHLHTVKMDCT***NLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIFYVIFNYEKDMFDIEYTDVG**K******************************************SSEDTSEIIVEPRTITDDSEYSSISYEYDY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESWKVCFELFKSVHLHTVKMDCTTEQNLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCIIEFPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGPKEKLDHVKQTEGEDVHYDCFENEESIDVSSEDTSEIIVEPRTITDDSEYSSISYEYDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	360	2.2.26 [Sep-21-2011]
Q9NWK9	470	Box C/D snoRNA protein 1	no	N/A	0.647	0.495	0.304	1e-24
Q5RF97	465	Box C/D snoRNA protein 1	yes	N/A	0.647	0.501	0.296	2e-24
Q3UFB2	460	Box C/D snoRNA protein 1	yes	N/A	0.605	0.473	0.297	6e-24
O74906	345	Putative box C/D snoRNA p	yes	N/A	0.366	0.382	0.309	6e-11
P38772	366	Box C/D snoRNA protein 1	yes	N/A	0.619	0.609	0.242	3e-06

>sp|Q9NWK9|BCD1_HUMAN Box C/D snoRNA protein 1 OS=Homo sapiens GN=ZNHIT6 PE=1 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 133/250 (53%), Gaps = 17/250 (6%)

Query: 28  NLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFI 87
           N P   ++K++ +  CE C  E AKY CP+C   +C L CV  HK EL C+G+R+K  +I
Sbjct: 206 NHPVGCKRKLA-MSRCETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYI 264

Query: 88  PLQKFSNLELQNDFNLLEEVSNSLFKYKRDP-VKNSVSMYNKLPHPLHILRKYAYMRKTQ 146
            +Q+F+ + L +D+  LE+V+ +     RD  +K  +S  NK    ++ ++  A  +   
Sbjct: 265 SIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKRPIS--NKY---MYFMKNRARRQGIN 319

Query: 147 VKFLPKLFTQHKINTSCV--YKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLD 204
           +K LP  FT+ K N++     K    W V+  F     +++++++ D   +   L  ++D
Sbjct: 320 LKLLPNGFTKRKENSTFFDKKKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYID 379

Query: 205 QPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSS----KFYILDHTLSIAENLKNKCI 260
            P+ +      Q   A+ ++    G+ ILMK+E       ++Y LD   S+ +NL+NK I
Sbjct: 380 -PEKS-DPVIRQRLKAYIRSQ--TGVQILMKIEYMQQNLVRYYELDPYKSLLDNLRNKVI 435

Query: 261 IEFPIFYVIF 270
           IE+P  +V+ 
Sbjct: 436 IEYPTLHVVL 445

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.
Homo sapiens (taxid: 9606)

>sp|Q5RF97|BCD1_PONAB Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 132/250 (52%), Gaps = 17/250 (6%)

Query: 28  NLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFI 87
           N P   ++K++ +  CE C  E AKY CP+C   +C L CV  HK EL C+G+R+K  +I
Sbjct: 201 NHPVGCKRKLA-MSRCETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYI 259

Query: 88  PLQKFSNLELQNDFNLLEEVSNSLFKYKRDP-VKNSVSMYNKLPHPLHILRKYAYMRKTQ 146
            +Q+F+ + L +D+  LE+V+ +     RD  +K  +S  +     ++ ++  A  +   
Sbjct: 260 SIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKRPISNKH-----MYFMKNRARRQGIN 314

Query: 147 VKFLPKLFTQHKINTSCV--YKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLD 204
           +K LP  FT+ K N++     K    W V+  F     +++++++ D   +   L  ++D
Sbjct: 315 LKLLPNGFTKRKENSTFFDKKKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYID 374

Query: 205 QPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSS----KFYILDHTLSIAENLKNKCI 260
            P+ +      Q   A+ ++    G+ ILMK+E       ++Y LD   S+ +NL+NK I
Sbjct: 375 -PEKS-DPVIRQRLKAYIRSQ--TGVQILMKIEYMQQNLVRYYELDPYKSLLDNLRNKVI 430

Query: 261 IEFPIFYVIF 270
           IE+P  +V+ 
Sbjct: 431 IEYPTLHVVL 440

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Pongo abelii (taxid: 9601)

>sp|Q3UFB2|BCD1_MOUSE Box C/D snoRNA protein 1 OS=Mus musculus GN=Znhit6 PE=2 SV=2

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 24/242 (9%)

Query: 40  LGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQN 99
           L  CE C  E AKY CP+C   +C L CV  HK +L C G+R+K  ++ LQ+F+ + L +
Sbjct: 208 LSRCETCGTEEAKYRCPRCMRFSCSLPCVKKHKADLTCSGVRDKTAYVSLQQFTEMNLLS 267

Query: 100 DFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHP---LHILRKYAYMRKTQVKFLPKLFTQ 156
           D+  LE+V+ +  K  RD        + K P     L  ++  A  +   ++ LP  F++
Sbjct: 268 DYRFLEDVARTADKVSRD-------TFLKRPKRKKYLFFMKNRARKQGIYLRLLPNGFSK 320

Query: 157 HKINTSCV--YKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLD--QPDLAFYK 212
            K N++     K    W V+  F     +++++++ D   +   L  ++D  + D    +
Sbjct: 321 RKENSTVFDHRKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYIDPEESDPVIRQ 380

Query: 213 AADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTL----SIAENLKNKCIIEFPIFYV 268
                 L  Y A    G+ ILM+VE   +  I  H L    S+++NLK+K IIE+P  +V
Sbjct: 381 R-----LKAY-AQSQTGVQILMRVENMQQNMIRYHELDPYKSLSDNLKDKVIIEYPTLHV 434

Query: 269 IF 270
           + 
Sbjct: 435 VL 436

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Mus musculus (taxid: 10090)

>sp|O74906|BCD1_SCHPO Putative box C/D snoRNA protein SPCC613.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC613.07 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 7/139 (5%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           RLG C  C    +KY CP+C+ + CCL C   HKR  +C G R+   F+P  K  N  L 
Sbjct: 5   RLGICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCSGERDPATFVPKSKLVN-HLN 63

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
           +DFN L  V   L   K +    S  + N+       L++        +KF P    + +
Sbjct: 64  SDFNFLSGVER-LINRKEN---GSHQVSNRAERNRLQLKRSLERAGINIKFAPPSNKKRR 119

Query: 159 INTSCVYKNN--LYWRVEW 175
           +N +   K +  + W +EW
Sbjct: 120 LNRTHYDKKSHLIKWSIEW 138

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38772|BCD1_YEAST Box C/D snoRNA protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCD1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 106/289 (36%), Gaps = 66/289 (22%)

Query: 43  CEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVK-FIPLQKFS-------- 93
           C VC I+  KY CP+C ++TC L C   HK    C G  +  K +I  +           
Sbjct: 5   CGVCGIKEFKYKCPRCLVQTCSLECSKKHKTRDNCSGQTHDPKEYISSEALKQADDDKHE 64

Query: 94  -NLELQNDFNLLEEVSNSLFKYKRD----------PVKNSVSMYNKLPHPL--------- 133
            N  +Q D+N L ++   +   K D          PV    S + K  + +         
Sbjct: 65  RNAYVQRDYNYLTQLKRMVHVQKMDARMKNKRVLGPVGGHNSNFKKRRYDIDEDDRDSTE 124

Query: 134 --HILRKYAYMRKTQVKFLPKLFTQHKINTSCVYKN-NLY-WRVEWVFVSGN-------- 181
              I+R     R      LPK   +   N S   K  +L+ W VEW+             
Sbjct: 125 CQRIIR-----RGVNCLMLPKGMQRSSQNRSKWDKTMDLFVWSVEWILCPMQEKGEKKEL 179

Query: 182 LKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAA------DQPDLAFYKAAGI-----NGL 230
            KHV  ++ ++  L   +  ++ Q    FY+ A      +  D +  K         +GL
Sbjct: 180 FKHVSHRIKETDFLVQGMGKNVFQKCCEFYRLAGTSSCIEGEDGSETKEERTQILQKSGL 239

Query: 231 LILMKVERSSKFYILD---------HTLSIAENLKNKCIIEFPIFYVIF 270
               K    +  +I+D         H   I E LKN  +IEFP  +V  
Sbjct: 240 KFYTKTFPYNTTHIMDSKKLVELAIHEKCIGELLKNTTVIEFPTIFVAM 288

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
307201140	343	Zinc finger HIT domain-containing protei	0.819	0.860	0.389	2e-54
383848534	343	PREDICTED: box C/D snoRNA protein 1-like	0.777	0.816	0.411	2e-54
350416025	339	PREDICTED: box C/D snoRNA protein 1-like	0.688	0.731	0.438	5e-54
340711572	324	PREDICTED: box C/D snoRNA protein 1-like	0.675	0.75	0.431	3e-52
380030543	340	PREDICTED: box C/D snoRNA protein 1-like	0.730	0.773	0.429	4e-52
307180026	330	Zinc finger HIT domain-containing protei	0.736	0.803	0.424	2e-51
345479972	357	PREDICTED: box C/D snoRNA protein 1-like	0.786	0.792	0.4	6e-50
242023743	302	conserved hypothetical protein [Pediculu	0.666	0.794	0.423	2e-46
328776674	339	PREDICTED: box C/D snoRNA protein 1-like	0.608	0.646	0.432	2e-45
157133822	384	hypothetical protein AaeL_AAEL012876 [Ae	0.675	0.632	0.428	5e-45

>gi|307201140|gb|EFN81051.1| Zinc finger HIT domain-containing protein 6 [Harpegnathos saltator]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/316 (38%), Positives = 194/316 (61%), Gaps = 21/316 (6%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           +L DCEVC    AKYTCPKCE++TC L CVN+HKREL+CDGIR+K KF+ L+ F++L+L 
Sbjct: 7   KLKDCEVCGATKAKYTCPKCEVRTCSLVCVNVHKRELKCDGIRDKTKFVSLKSFTDLDLL 66

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
           +D+ LLEE+  ++   KR+P K  V     LP  LH L+  A+ ++T + F+P+ F++ K
Sbjct: 67  SDYRLLEEIGKTIDTCKRNPEKKYVRQGVPLPLYLHKLKAAAFSKRTILLFMPQNFSRRK 126

Query: 159 INTSCV--YKNNLYWRVEWVF-VSGNLKHVDEKLIDSTRL----------CIPLTAHLDQ 205
            NT+ +    N L+WR+EW+F  + N+K   +K++D+TR+           + L  ++D 
Sbjct: 127 ANTTYLNWKTNELFWRIEWIFPQADNIKWTMKKVLDTTRISTLIDEILDPTVSLADNVDI 186

Query: 206 PDLAFYKAADQPD-LAFYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNKCI 260
            +L    + +  D L FYK+AG+N + +L+K E+    S +F+ LD TLS+ ENL+NK I
Sbjct: 187 TELNVKLSKNLSDKLQFYKSAGLNNIKVLLKAEKVKNSSCRFHDLDLTLSLRENLRNKTI 246

Query: 261 IEFPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGPKEKLDHVKQTEGEDVHYD 320
           IEFP  YV+  +  DM++I  TD  E  D   +SH+       +  +  K+++  +  ++
Sbjct: 247 IEFPTLYVVIKHHSDMYEIIDTD-EETSDIEYKSHTARRKNIDKSTEKEKESKPVNYFFN 305

Query: 321 CF--ENEESIDVSSED 334
            F   ++E ID S E+
Sbjct: 306 DFSESDDEKIDGSHEN 321

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848534|ref|XP_003699904.1| PREDICTED: box C/D snoRNA protein 1-like [Megachile rotundata]

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/299 (41%), Positives = 182/299 (60%), Gaps = 19/299 (6%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           ++ DCEVC    AKYTCPKCE++TCCL CVNIHK+ELECDGIR+K KFIPL+ F++L++ 
Sbjct: 7   KIEDCEVCGANKAKYTCPKCEVRTCCLQCVNIHKKELECDGIRDKTKFIPLKSFTDLDVL 66

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
           +D+ LLEEV  ++ + KRDP K   +  N LP  L  LR  A+ R   ++F+P+ F++H+
Sbjct: 67  SDYRLLEEVGRTVDQLKRDPSK-KYTRQNNLPLHLAKLRTAAFKRTINLQFMPQNFSRHQ 125

Query: 159 INTSCV--YKNNLYWRVEWVFVSG-NLKHVDEKLIDSTRLCI-------PLTAHLDQPDL 208
            NT+ +    N+LYWR+EW+F    + K V E+ +++TRL I       P+ +  D+ D+
Sbjct: 126 NNTTFLNWKTNDLYWRIEWIFPQAEHTKWVTERALETTRLSILIEEILNPINSLKDKNDV 185

Query: 209 A--FYKAADQPDLAFYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNKCIIE 262
                K      L +Y+AAG+ G+ +L+K ER      KFY LD T S+ ENL+NK IIE
Sbjct: 186 EELNLKMRLNDRLQYYQAAGLTGIKVLLKAERIIKSDLKFYELDVTCSLQENLENKTIIE 245

Query: 263 FPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGPKEKLDHV--KQTEGEDVHY 319
           FP  Y+I       ++I  TD     D + +S + +    K K + +  K+ +   V+Y
Sbjct: 246 FPTIYIILKDHSCTYEIIDTDDELTCDAQCESDNNVLKRKKRKYNQIDKKEKKASSVNY 304

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416025|ref|XP_003490820.1| PREDICTED: box C/D snoRNA protein 1-like [Bombus impatiens]

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 117/267 (43%), Positives = 169/267 (63%), Gaps = 19/267 (7%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           +L +CEVC    AKYTCPKCE++TCCL CVNIHK+ELECDGIR+K KFIPL+ F++L++ 
Sbjct: 7   KLENCEVCGGNKAKYTCPKCEVRTCCLQCVNIHKKELECDGIRDKTKFIPLRSFTDLDVL 66

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
           +D+ LLEEV  ++ + KRDP+K      N LP  L+ L++  + R   ++F+P+ F++HK
Sbjct: 67  SDYRLLEEVGRTVEQLKRDPLKKCTRQLN-LPMHLNKLKRATFKRNVNLQFMPQHFSRHK 125

Query: 159 INTSCV--YKNNLYWRVEWVFVSGN-LKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAAD 215
            NT+ +    + LYWR+EW+F   +  K V E+ ++STRL + +   LD P  +     D
Sbjct: 126 NNTTYLNWKTSELYWRIEWIFPQADCTKWVTERALESTRLSLLIEEILD-PTKSVENKND 184

Query: 216 ----------QPDLAFYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNKCII 261
                        L FY+AAG++G+ +L+K E+      KFY LD  LS+ ENL+NK II
Sbjct: 185 IEELNLRIRLNERLQFYQAAGLSGIKVLLKAEKVVKSDLKFYELDVRLSLKENLENKTII 244

Query: 262 EFPIFYVIFNYEKDMFDIEYTDVGEAK 288
           EFP  Y+I N    M++I  TD   +K
Sbjct: 245 EFPTIYIILNDHSYMYEIIDTDANTSK 271

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711572|ref|XP_003394349.1| PREDICTED: box C/D snoRNA protein 1-like [Bombus terrestris]

 Score =  212 bits (539), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/262 (43%), Positives = 165/262 (62%), Gaps = 19/262 (7%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           ++ +CEVC    AKYTCPKCE++TCCL CVNIHK+ELECDGIR+K KFIPL+ F++L++ 
Sbjct: 7   KIENCEVCGGNKAKYTCPKCEVRTCCLQCVNIHKKELECDGIRDKTKFIPLKSFTDLDIL 66

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
           +D+ LLEEV  ++ + KR+P+K      N LP  L+ L++  + R   ++ +P+ F++HK
Sbjct: 67  SDYRLLEEVGRTVEQLKRNPLKKCTRQLN-LPMHLNKLKRATFKRNVNLQLMPQHFSRHK 125

Query: 159 INTSCV--YKNNLYWRVEWVFVSGN-LKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAAD 215
            NT+ +      LYWR+EW+F   +  K V E+ ++STRL + +   LD P  +     D
Sbjct: 126 DNTTYLNWKTGELYWRIEWIFPQADCTKWVTERALESTRLSMLIEEILD-PTKSVENKND 184

Query: 216 ----------QPDLAFYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNKCII 261
                        L FY+AAG++G+ +L+K E+      KFY LD  LS+ ENL+NK II
Sbjct: 185 IEELNLRKLLNARLQFYQAAGLSGIKVLLKAEKVVKSDLKFYELDIRLSLKENLENKTII 244

Query: 262 EFPIFYVIFNYEKDMFDIEYTD 283
           EFP  Y+I N    M++I  TD
Sbjct: 245 EFPTIYIILNDHSHMYEIIDTD 266

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030543|ref|XP_003698905.1| PREDICTED: box C/D snoRNA protein 1-like [Apis florea]

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/282 (42%), Positives = 174/282 (61%), Gaps = 19/282 (6%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           ++ DCEVC    AKYTCPKCE++TCCL C+NIHK+ELECDGIR++ KFIPL+ F++L++ 
Sbjct: 7   KIEDCEVCGENKAKYTCPKCEVRTCCLQCINIHKKELECDGIRDRTKFIPLKSFTDLDIL 66

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
           +D+ LLEEV  ++ + KRDP K      N LP  L+ LR  A  R   ++F+P+ F++HK
Sbjct: 67  SDYRLLEEVGRTVDQLKRDPFKKCTRRIN-LPVHLNKLRIAAIKRNITLQFMPQHFSRHK 125

Query: 159 INTSCV--YKNNLYWRVEWVFVSGN-LKHVDEKLIDSTRLC-------IPLTAHLDQPDL 208
            NT+ +    N LYWR+EW+F      K + E+ ++S RL         P+ +  ++ D+
Sbjct: 126 NNTTYLNWKSNELYWRIEWIFPQAECTKWITERALESIRLSSLLEEILYPIKSVKNKSDI 185

Query: 209 A--FYKAADQPDLAFYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNKCIIE 262
                + +    L FY+AAG+ G+ +L+K E+    + KFY LD TLS+ ENL+NK IIE
Sbjct: 186 EELNLRISLNEKLQFYQAAGLYGIKVLLKAEKVVKSNLKFYELDITLSLKENLENKIIIE 245

Query: 263 FPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGPKE 304
           FPI YVI      M++I  TD   +K   I  H+ I    KE
Sbjct: 246 FPIIYVILKDHSYMYEIIDTDENISKTTTI--HNNILKKNKE 285

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180026|gb|EFN68102.1| Zinc finger HIT domain-containing protein 6 [Camponotus floridanus]

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/285 (42%), Positives = 170/285 (59%), Gaps = 20/285 (7%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           +L DCEVC    AKYTCPKCE++TC L CVN HK+EL+CDGIR+K KFIPL  F++L+L 
Sbjct: 7   KLEDCEVCGTTKAKYTCPKCEVRTCSLICVNRHKKELDCDGIRDKTKFIPLASFADLDLL 66

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
           +D+  LE+ S  +   KR+P +  +   N LP  LH LR  A  RK  + F+P++F +HK
Sbjct: 67  SDYRFLEQASRLIDTKKRNPERRYIRPIN-LPVHLHKLRCAASCRKVSLLFMPQIFNRHK 125

Query: 159 INTSCV--YKNNLYWRVEWVFVSG-NLKHVDEKLIDSTRLCIPLTAHLDQPDLA------ 209
            NT+ +    N L+WR+EW+F    N+K + ++ +D+TRL   +   LD   L       
Sbjct: 126 ENTTFLNWKTNELFWRIEWIFPQAQNIKWIMKRALDNTRLSTLVEQVLDPVSLEDESDIE 185

Query: 210 --FYKAADQPDLAFYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNKCIIEF 263
               + A    L FY+AAG+  + +L+K E+     SKFY LD TL++ ENL+NK I+EF
Sbjct: 186 KLNIQLALADKLQFYRAAGLTSIKVLLKAEKVKKAHSKFYELDLTLTLKENLENKTIVEF 245

Query: 264 PIFYVIFNYEKDMFDI----EYTDVGEAKDPRIQSHSQIENGPKE 304
           P FYVI     DM++I    E T   E K+P  +   + E   KE
Sbjct: 246 PTFYVIMKDHSDMYEIIDTDEETSDTECKNPGERKRRKNEFDKKE 290

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479972|ref|XP_001604792.2| PREDICTED: box C/D snoRNA protein 1-like [Nasonia vitripennis]

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/310 (40%), Positives = 177/310 (57%), Gaps = 27/310 (8%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           +L  CEVCA   AKYTCPKCE++TC L C NIHK+ELECDGIR+K KFIPL  F++L+L 
Sbjct: 13  KLETCEVCAANKAKYTCPKCEVRTCSLTCANIHKQELECDGIRDKTKFIPLNSFTDLDLL 72

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNK-LPHPLHILRKYAYMRKTQVKFLPKLFTQH 157
           +D+ LLE +  S+ + ++DP K    +  + LP   + LR  AY +  ++ F+P  F++H
Sbjct: 73  SDYRLLENIGRSVEQLQKDPAKRCTRLIEQNLPPHFYRLRAAAYRKGVELHFMPHNFSRH 132

Query: 158 KINTSCV--YKNNLYWRVEWVFVSG-NLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAA 214
             NT+ +    N ++WRVE +F    N K V E++ ++ RL I L   L+       K++
Sbjct: 133 IENTTHLEWKTNEIFWRVELIFSQAENAKWVIERVPENKRLSILLEEILNGEGSTETKSS 192

Query: 215 D--------QPDLAFYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNKCIIE 262
           D        Q  L FY+A G++GL   +K ER     S+F+ LD  +++ ENL NK IIE
Sbjct: 193 DASSHLSVLQNKLKFYRACGLSGLKAFLKAERVKKSDSRFFDLDLDMTLQENLNNKTIIE 252

Query: 263 FPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGPKEKLDHVKQTEGEDVHYDCF 322
           FPI YV      DMF+I  +D  E K+ + + HS   N    KL+  ++        D  
Sbjct: 253 FPIIYVALKDHSDMFEIIDSDDEELKE-KAERHSNRRN----KLNRKRK------QMDDQ 301

Query: 323 ENEESIDVSS 332
           EN   IDV S
Sbjct: 302 ENSPKIDVDS 311

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023743|ref|XP_002432290.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517713|gb|EEB19552.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/255 (42%), Positives = 163/255 (63%), Gaps = 15/255 (5%)

Query: 34  EKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFS 93
           ++K +RLG+CEVC  E A+YTCP+CE+KTC LNCV IHK+EL+C G R+KV F+P+ KF+
Sbjct: 8   DEKYNRLGNCEVCGNENAQYTCPRCEIKTCSLNCVKIHKKELDCSGDRDKVGFVPMSKFN 67

Query: 94  NLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKL 153
           NL L +D+ LLE+VS ++   KR+P+K        LP  L+ LR+ A  RKT ++FLP+ 
Sbjct: 68  NLTLLSDYRLLEDVSRTVDNCKRNPLKKYTRFNKPLPPHLYKLRREALSRKTTLQFLPQH 127

Query: 154 FTQHKINTSCVYKNN--LYWRVEWVFV-SGNLKHVDEKLIDSTRLCIPLTAHLD---QPD 207
           FT+H+ NT+ ++     ++W+++ +F  + NL  V +K  ++ RL   L+ ++D    PD
Sbjct: 128 FTRHQNNTTYLHFETKIIHWKIQLIFYHADNLNVVIDKCNENDRLSTILSNYVDFDKCPD 187

Query: 208 LAFYKAADQPDLAFYKAAGINGLLILMKVER---SSKFYILDHTLSIAENLKNKCIIEFP 264
                 A++  L +Y + G+ GL +L+K E       F+ LD   S+ EN ++K IIE+P
Sbjct: 188 ------AERKILKYYHSTGLPGLEVLLKAENVIEQPSFFQLDVHSSLKENFEDKIIIEYP 241

Query: 265 IFYVIFNYEKDMFDI 279
           I YVIF   KD F I
Sbjct: 242 ILYVIFKSHKDEFRI 256

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776674|ref|XP_396837.4| PREDICTED: box C/D snoRNA protein 1-like [Apis mellifera]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/236 (43%), Positives = 151/236 (63%), Gaps = 17/236 (7%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           ++ DCEVC    AKYTCPKCE++TCCL C+NIHK+ELECDGIR++ KFIPL+ F++L++ 
Sbjct: 7   KIEDCEVCGENKAKYTCPKCEVRTCCLQCINIHKKELECDGIRDRTKFIPLKSFTDLDIL 66

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
           +D+ LLEEV  ++ + KRDP K      N LP  L+ LR  A  R   ++F+P+ F++HK
Sbjct: 67  SDYRLLEEVGRTVEQLKRDPFKKCTRRIN-LPVHLNKLRIAAIKRNITLQFMPQHFSKHK 125

Query: 159 INTSCV--YKNNLYWRVEWVFVSGN-LKHVDEKLIDSTRLC-------IPLTAHLDQPDL 208
            NT+ +    N LYWR+EW+F      K + E+ ++S RL         P+ +  ++ D+
Sbjct: 126 NNTTYLNWKSNELYWRIEWIFPQAECTKWITERALESIRLSSLLEEILYPMKSVKNKSDI 185

Query: 209 A--FYKAADQPDLAFYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNK 258
                + +    L FY+AAG+ G+ +L+K E+    + KFY LD TLS+ ENL+NK
Sbjct: 186 EELNLRISLNEKLQFYQAAGLYGIKVLLKAEKVVKSNLKFYELDITLSLKENLENK 241

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133822|ref|XP_001656294.1| hypothetical protein AaeL_AAEL012876 [Aedes aegypti] gi|157133824|ref|XP_001656295.1| hypothetical protein AaeL_AAEL012876 [Aedes aegypti] gi|108870698|gb|EAT34923.1| AAEL012876-PA [Aedes aegypti] gi|403183316|gb|EJY58005.1| AAEL012876-PB [Aedes aegypti]

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/252 (42%), Positives = 151/252 (59%), Gaps = 9/252 (3%)

Query: 39  RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQ 98
           RLG CEVC    AKYTCPKCE+K+CCL CVNIHK+EL CDGIR++ K+IP++K S +++ 
Sbjct: 25  RLGLCEVCNAILAKYTCPKCEIKSCCLKCVNIHKKELSCDGIRDRTKYIPMKKMSQMDMM 84

Query: 99  NDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHK 158
           +D+  LEE S  +   KRD +K        LP  L  LR  A  R T +KFL + FT+H+
Sbjct: 85  SDYYFLEECSRFVDDRKRDKIKRYTRYNKTLPPSLFRLRCAARERGTTLKFLLQNFTKHQ 144

Query: 159 INTSCVYKNNLY--WRVEWVFVSG-NLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAAD 215
            NTS +    L   WRVEW F +   L  VDE+  ++  L   L  +L+  +   +    
Sbjct: 145 RNTSQLNFKTLVINWRVEWCFPNAEGLLFVDERCDENASLYDLLGKYLEAGNGQDF--VG 202

Query: 216 QPDLAFYKAAGINGLLILMKVE---RS-SKFYILDHTLSIAENLKNKCIIEFPIFYVIFN 271
           +  L FY++ G+N L +L+K E   RS ++F+ L    S+ ENLK K I+E+P+ YVIF 
Sbjct: 203 KSKLEFYQSRGMNRLRVLLKAEGVKRSKNRFFELKPKKSLKENLKGKTIVEYPVIYVIFK 262

Query: 272 YEKDMFDIEYTD 283
              D FD+  +D
Sbjct: 263 EASDGFDVIESD 274

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	360
FB|FBgn0030406	336	CG1463 [Drosophila melanogaste	0.827	0.886	0.340	3.5e-36
UNIPROTKB|F1MYH0	471	ZNHIT6 "Uncharacterized protei	0.672	0.513	0.306	3.5e-27
UNIPROTKB|Q9NWK9	470	ZNHIT6 "Box C/D snoRNA protein	0.644	0.493	0.305	4.6e-27
UNIPROTKB|E1BRD0	272	ZNHIT6 "Uncharacterized protei	0.7	0.926	0.313	1.1e-25
RGD|1308723	461	Znhit6 "zinc finger, HIT-type	0.655	0.511	0.294	2.1e-25
MGI|MGI:1916996	460	Znhit6 "zinc finger, HIT type	0.652	0.510	0.301	2.7e-25
UNIPROTKB|F1SEX2	307	ZNHIT6 "Uncharacterized protei	0.330	0.387	0.333	1.4e-14
POMBASE|SPCC613.07	345	SPCC613.07 "snoRNA biogenesis	0.727	0.759	0.256	2.4e-14
CGD|CAL0006308	362	orf19.2260 [Candida albicans (	0.238	0.237	0.329	5.9e-13
UNIPROTKB|Q59Z40	362	CaO19.2260 "Putative uncharact	0.238	0.237	0.329	5.9e-13

FB|FBgn0030406 CG1463 [Drosophila melanogaster (taxid:7227)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 109/320 (34%), Positives = 160/320 (50%)

Query:    36 KVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNL 95
             +  RLG CEVCA + A Y CPKCE+KTC L CV IHK+EL CDG R++ KF+PL + ++ 
Sbjct:    10 RTMRLGMCEVCAAKEACYACPKCEVKTCSLPCVQIHKKELNCDGQRDRTKFVPLSEMTSR 69

Query:    96 ELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFT 155
             E  +D+  LEE +      K DP K        LP   H +R  A  R   ++   + F+
Sbjct:    70 EFMSDYCFLEECTRYAENRKSDPCKRFTHDQRNLPVTQHRMRMAAKKRNINLRLQLENFS 129

Query:   156 QHKINTSCV-YK-NNLYWRVEWVFVS----GNLKHVDEKLID---STRLCIP-LTAHLDQ 205
             +HK NT+ + +K    +WR+EW+F +     +L     + +D   +  L +P L A    
Sbjct:   130 RHKENTTYLNWKLGRFHWRIEWLFANIPYEASLPRNVTRFVDKECNEELTLPDLVAKY-- 187

Query:   206 PDLAFYKAADQPDL-AFYKAAGINGLLILMKVE---RSS-KFYILDHTLSIAENLKNKCI 260
              DL    A +Q  L A ++ AGI  L   ++ E   RSS + Y+LD T ++AENL  K I
Sbjct:   188 VDLRHETAREQRKLLANHQTAGIGQLSFWLRAEGVRRSSTRCYLLDSTKTLAENLVGKTI 247

Query:   261 IEFPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGPKEKLDHVKQT--EGEDVH 318
             +EFP   V ++  K     E  D  E  +   +    +   P    + V +   +  DV+
Sbjct:   248 VEFPTILVTYD-PKPPGGYEAIDSSEEFEEEHEEQVPVTK-PGTSSNAVAEDLDDSHDVY 305

Query:   319 YDCFENEESIDVS-SEDTSE 337
             Y         DVS +ED  E
Sbjct:   306 YKLAAAFAGEDVSETEDDEE 325

GO:0048812 "neuron projection morphogenesis" evidence=IMP

UNIPROTKB|F1MYH0 ZNHIT6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 307 (113.1 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 80/261 (30%), Positives = 132/261 (50%)

Query:    26 EQNLPPEV-EKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKV 84
             E  + P V  K+   +  CE C  E AKY CP+C   +C L CV  HK EL C+G+R+K 
Sbjct:   202 EPQINPSVGSKRKLAMSRCETCGTEEAKYRCPRCLRYSCSLPCVKKHKAELTCNGVRDKT 261

Query:    85 KFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDP-VKNSVSMYNKLPHPLHILRKYAYMR 143
              ++ +Q+F+ + L +D+  LE+V+ +     RD  +K  +S  NK  H ++ ++  A  +
Sbjct:   262 AYVSIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKRPIS--NK--H-MYFMKNRARKQ 316

Query:   144 KTQVKFLPKLFTQHKINTSCV--YKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTA 201
                +K LP  FT+ K N++     K    W V+  F      +V++++ D   +   L  
Sbjct:   317 GINLKLLPNGFTKRKENSTFFDKKKQQFCWHVKLQFPQSQAVYVEKRVPDDKTINEILRP 376

Query:   202 HLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSS-----KFYILDHTLSIAENLK 256
             ++D P+ +      +  L  Y      G+ ILMKVE        ++Y LD   S+ +NL+
Sbjct:   377 YID-PEKS--DPVIRQRLKAYICCQ-TGVQILMKVENMQQNLVRRYYELDPDRSLLDNLR 432

Query:   257 NKCIIEFPIFYVIFN-YEKDM 276
              K I+E+P  +V+   Y  DM
Sbjct:   433 GKVILEYPTLHVVLKEYSNDM 453

GO:0070761 "pre-snoRNP complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

UNIPROTKB|Q9NWK9 ZNHIT6 "Box C/D snoRNA protein 1" [Homo sapiens (taxid:9606)]

 Score = 306 (112.8 bits), Expect = 4.6e-27, P = 4.6e-27
 Identities = 76/249 (30%), Positives = 133/249 (53%)

Query:    28 NLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFI 87
             N P   ++K++ +  CE C  E AKY CP+C   +C L CV  HK EL C+G+R+K  +I
Sbjct:   206 NHPVGCKRKLA-MSRCETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCNGVRDKTAYI 264

Query:    88 PLQKFSNLELQNDFNLLEEVSNSLFKYKRDP-VKNSVSMYNKLPHPLHILRKYAYMRKTQ 146
              +Q+F+ + L +D+  LE+V+ +     RD  +K  +S  NK    ++ ++  A  +   
Sbjct:   265 SIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKRPIS--NKY---MYFMKNRARRQGIN 319

Query:   147 VKFLPKLFTQHKINTSCV--YKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLD 204
             +K LP  FT+ K N++     K    W V+  F     +++++++ D   +   L  ++D
Sbjct:   320 LKLLPNGFTKRKENSTFFDKKKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKPYID 379

Query:   205 QPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSS----KFYILDHTLSIAENLKNKCI 260
              P+ +      Q   A+ ++    G+ ILMK+E       ++Y LD   S+ +NL+NK I
Sbjct:   380 -PEKSD-PVIRQRLKAYIRSQ--TGVQILMKIEYMQQNLVRYYELDPYKSLLDNLRNKVI 435

Query:   261 IEFPIFYVI 269
             IE+P  +V+
Sbjct:   436 IEYPTLHVV 444

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0070761 "pre-snoRNP complex" evidence=IDA

UNIPROTKB|E1BRD0 ZNHIT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 84/268 (31%), Positives = 134/268 (50%)

Query:    43 CEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFN 102
             CE C  E AKY CP+C   +C L CV  HK  L C G+R+K  F+ + +F++L L +D+ 
Sbjct:     6 CETCGEEEAKYRCPRCMKYSCSLLCVKKHKLALSCSGVRDKTAFVSVTEFTDLNLLSDYR 65

Query:   103 LLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTS 162
              LE+V  +     RD   +  +  NK    ++ LR  A      +K LP  FT+ K N++
Sbjct:    66 FLEDVGRAADAAARDLSVHRPAT-NKF---INYLRNRARRHNINLKTLPIGFTKRKENST 121

Query:   163 CVYKNN--LYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLAFYKAADQPDLA 220
                K     YW ++ VF   + ++  +++ +   L   L  ++D P  +      +  L 
Sbjct:   122 IFNKKEQKFYWHLKLVFPHCHAEYTLKRVPEDKTLTDILKPYID-PVESDPVVCQR--LK 178

Query:   221 FYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNKCIIEFP-IFYVIFNYEKD 275
              Y  +  + + ILMK+E     S+++  LD + S+ ENLKNK IIE+P +F V+   + D
Sbjct:   179 TYTMSPRSDVQILMKIENRKQNSTRYSELDASRSLLENLKNKVIIEYPTLFVVLKKLKND 238

Query:   276 MFDI--EYTDVGEAKDPRIQSHSQIENG 301
             M  +  E ++  E  D    S S  E G
Sbjct:   239 MVVLGQEASESAEDSDSGSSSLSSEEEG 266

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0070761 "pre-snoRNP complex" evidence=IEA

RGD|1308723 Znhit6 "zinc finger, HIT-type containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 291 (107.5 bits), Expect = 2.1e-25, P = 2.1e-25
 Identities = 74/251 (29%), Positives = 128/251 (50%)

Query:    26 EQNLPPEVE-KKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKV 84
             E  + P V  K+   +  CE C  E AKY CP+C   +C L CV  HK EL C G+R+K 
Sbjct:   193 EPQMNPRVGCKRKLAMSRCETCGTEEAKYRCPRCMRYSCSLPCVKRHKAELMCSGVRDKT 252

Query:    85 KFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRK 144
              ++ LQ+F+ + L +D+  LE+V+ +  +  RD          K    L  L+  A  + 
Sbjct:   253 AYVSLQRFTEMNLLSDYRFLEDVARTADRVSRDIFLTRP----KRKKYLLFLKNRARKQG 308

Query:   145 TQVKFLPKLFTQHKINTSCV-YKNNLY-WRVEWVFVSGNLKHVDEKLIDSTRLCIPLTAH 202
               ++ LP  F++ + N++   ++N  + W V+  F     ++V++++ D   +   L  +
Sbjct:   309 VYLRLLPSGFSKRRENSTVFDHRNQQFCWHVKLQFPQSQAEYVEKRVPDDKTINEILKPY 368

Query:   203 LDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSS----KFYILDHTLSIAENLKNK 258
             +D P+ +      +  L  Y  +   G+ ILM+VE       ++Y LD + S+  NL+NK
Sbjct:   369 ID-PEKS--DPVIRQRLKAYTQSQ-TGVQILMRVENMQQNLIRYYELDPSKSLVNNLRNK 424

Query:   259 CIIEFPIFYVI 269
              IIE+P  +V+
Sbjct:   425 VIIEYPTLHVV 435

GO:0000492 "box C/D snoRNP assembly" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0070761 "pre-snoRNP complex" evidence=IEA;ISO

MGI|MGI:1916996 Znhit6 "zinc finger, HIT type 6" [Mus musculus (taxid:10090)]

 Score = 290 (107.1 bits), Expect = 2.7e-25, P = 2.7e-25
 Identities = 76/252 (30%), Positives = 127/252 (50%)

Query:    26 EQNLPPEV-EKKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKV 84
             E  + P V  K+   L  CE C  E AKY CP+C   +C L CV  HK +L C G+R+K 
Sbjct:   193 EPQMNPRVGSKRKLALSRCETCGTEEAKYRCPRCMRFSCSLPCVKKHKADLTCSGVRDKT 252

Query:    85 KFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRK 144
              ++ LQ+F+ + L +D+  LE+V+ +  K  RD          K    L  ++  A  + 
Sbjct:   253 AYVSLQQFTEMNLLSDYRFLEDVARTADKVSRDTFLKRP----KRKKYLFFMKNRARKQG 308

Query:   145 TQVKFLPKLFTQHKINTSCVY---KNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTA 201
               ++ LP  F++ K N S V+   K    W V+  F     +++++++ D   +   L  
Sbjct:   309 IYLRLLPNGFSKRKEN-STVFDHRKQQFCWHVKLQFPQSQAEYIEKRVPDDKTINEILKP 367

Query:   202 HLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSS----KFYILDHTLSIAENLKN 257
             ++D P+ +      +  L  Y A    G+ ILM+VE       +++ LD   S+++NLK+
Sbjct:   368 YID-PEES--DPVIRQRLKAY-AQSQTGVQILMRVENMQQNMIRYHELDPYKSLSDNLKD 423

Query:   258 KCIIEFPIFYVI 269
             K IIE+P  +V+
Sbjct:   424 KVIIEYPTLHVV 435

GO:0000492 "box C/D snoRNP assembly" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070761 "pre-snoRNP complex" evidence=ISO

UNIPROTKB|F1SEX2 ZNHIT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 41/123 (33%), Positives = 66/123 (53%)

Query:     6 VCFELFKSVHLHTVKMDCTTE---QNLPPEVEKKVSRLGDCEVCAIEPAKYTCPKCELKT 62
             +C +  K+V    V  D   +   Q  PP   K+   +  CE C  E AKY CP+C   +
Sbjct:   182 MCVKEEKNVPKEEVMADAQVKEEPQMHPPVGSKRKLAMSRCETCGTEEAKYRCPRCMRHS 241

Query:    63 CCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNLLEEVSNSLFKYKRDP-VKN 121
             C L CV  HK +L C+G+R+K  ++ +Q+F+ + L +D+  LE+V+ +     RD  +K 
Sbjct:   242 CSLPCVKKHKADLTCNGVRDKTAYVSIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKR 301

Query:   122 SVS 124
              +S
Sbjct:   302 PIS 304

GO:0070761 "pre-snoRNP complex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

POMBASE|SPCC613.07 SPCC613.07 "snoRNA biogenesis protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 204 (76.9 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 73/285 (25%), Positives = 129/285 (45%)

Query:    38 SRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLEL 97
             +RLG C  C    +KY CP+C+ + CCL C   HKR  +C G R+   F+P  K  N  L
Sbjct:     4 NRLGICSTCQKNASKYRCPRCDSRFCCLECNLEHKRLTKCSGERDPATFVPKSKLVN-HL 62

Query:    98 QNDFNLLEEVSNSLFKYKRDPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQH 157
              +DFN L  V   +   +++   + VS  N+       L++        +KF P    + 
Sbjct:    63 NSDFNFLSGVERLI--NRKENGSHQVS--NRAERNRLQLKRSLERAGINIKFAPPSNKKR 118

Query:   158 KIN-TSCVYKNNLY-WRVEW-VFVSGNLKHVDEKLIDSTRLCIPLTAHLDQPDLA--FYK 212
             ++N T    K++L  W +EW +  S   K + ++  ++T   I   +H +   L   F K
Sbjct:   119 RLNRTHYDKKSHLIKWSIEWCLHESSTSKDLTDEASENT---IITHSHPESEPLEKIFRK 175

Query:   213 AADQ-PDL-AFYKAAGING---LLILMKVERS-SKFYI---LDHTLSIAENLKNKCIIEF 263
               ++  ++ +    A I+    +  ++K  +S SK +I   ++ + S++  L+N  + E 
Sbjct:   176 LVEENSEMNSQVSKANIHAPDDMQFMIKSRKSRSKGFIYKKIEPSNSLSSCLRNSFVFEV 235

Query:   264 PIFYVIFNYEKDMFDIEY-TDVGEAKDPRIQSHSQIENGPKEKLD 307
             P  +V  +  +   +  Y T   E  D    S S I +  +   D
Sbjct:   236 PTIHVFTSTTQVHTESSYETSSSEQSDDSSSSSSCISDSEESSSD 280

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0016074 "snoRNA metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0006308 orf19.2260 [Candida albicans (taxid:5476)]

 Score = 161 (61.7 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
 Identities = 29/88 (32%), Positives = 49/88 (55%)

Query:    43 CEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSN--LELQND 100
             C +C    +KYTCP CE+KTC L+C N HK E +C G  +  K++   + +   + L  D
Sbjct:    10 CTICHENKSKYTCPACEIKTCSLSCYNKHKYERDCTGKVDSNKYLNRNELAADPVHLNRD 69

Query:   101 FNLLEEVSNSLFKYKRDPVKNSVSMYNK 128
             +N L  V   +   K D +K++ +++ +
Sbjct:    70 YNFLNNVDRKIHVGKEDIIKSAKNVFKR 97

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016074 "snoRNA metabolic process" evidence=IEA

UNIPROTKB|Q59Z40 CaO19.2260 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 161 (61.7 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
 Identities = 29/88 (32%), Positives = 49/88 (55%)

Query:    43 CEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSN--LELQND 100
             C +C    +KYTCP CE+KTC L+C N HK E +C G  +  K++   + +   + L  D
Sbjct:    10 CTICHENKSKYTCPACEIKTCSLSCYNKHKYERDCTGKVDSNKYLNRNELAADPVHLNRD 69

Query:   101 FNLLEEVSNSLFKYKRDPVKNSVSMYNK 128
             +N L  V   +   K D +K++ +++ +
Sbjct:    70 YNFLNNVDRKIHVGKEDIIKSAKNVFKR 97

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	360
pfam04438	30	pfam04438, zf-HIT, HIT zinc finger	2e-06

>gnl|CDD|203013 pfam04438, zf-HIT, HIT zinc finger

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 43 CEVCAIEPAKYTCPKCELKTCCLNCVN 69
          C VC   P+KY CP+C ++ C L C  
Sbjct: 5  CSVCG-NPSKYRCPRCGVRYCSLECYK 30

This presumed zinc finger contains up to 6 cysteine residues that could coordinate zinc. The domain is named after the HIT protein. This domain is also found in the Thyroid receptor interacting protein 3 (TRIP-3) that specifically interacts with the ligand binding domain of the thyroid receptor. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	360
KOG2858|consensus	390		99.9
KOG2858|consensus	390		99.6
KOG2857|consensus	157		98.86
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	98.77
KOG4317|consensus	383		98.55
KOG3362|consensus	156		97.55
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	92.72
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	91.85
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	85.18

>KOG2858|consensus

Probab=99.90  E-value=2.6e-25  Score=217.10  Aligned_cols=233  Identities=16%  Similarity=0.137  Sum_probs=139.4

Q ss_pred             cCCccCcccCCCCCCcccCCCCCCccccccccccccccccccCCCCcccccc-CCCcc------hhhhhhhhhhHHHHHh
Q psy15724         37 VSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIP-LQKFS------NLELQNDFNLLEEVSN  109 (360)
Q Consensus        37 ~~~~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd~t~fVp-~~~~~------~~~l~~DYnFLe~i~R  109 (360)
                      .....+|.||+.+++||+||||.++||||.|+++||...+|+|.|||..||| +++++      ++.|++|||||-+++|
T Consensus        14 ~~~~vlCgVClknE~KYkCPRCl~rtCsLeCskkHK~~dnCsG~rqp~t~Vp~l~q~d~~K~~~~q~v~~d~n~l~gvkr   93 (390)
T KOG2858|consen   14 GLHSVLCGVCLKNEPKYKCPRCLARTCSLECSKKHKIGDNCSGSRQPPTEVPMLDQPDTEKRLAGQWVEQDVNDLPGVKR   93 (390)
T ss_pred             ccchhhhhhcccCcccccCcchhhhheeccccccccccCCCcCCcCCcccccccccCCchhhhhhHHHHHHhhhhhcccc
Confidence            4567789999999999999999999999999999999999999999999999 45553      4689999999999999


Q ss_pred             h-hhhccCCCcc-----ccccCCCCCCchhHHHHHHHHHcCcEEE---EcCchhhhccccCcee--ccceEEEEEEEEEE
Q psy15724        110 S-LFKYKRDPVK-----NSVSMYNKLPHPLHILRKYAYMRKTQVK---FLPKLFTQHKINTSCV--YKNNLYWRVEWVFV  178 (360)
Q Consensus       110 ~-ve~~krd~~~-----r~~~~~~~lp~~~~~Lr~~a~~RgI~L~---~lP~gMsRrk~NtT~~--K~~~i~WtVEWiF~  178 (360)
                      . +...+.|...     +.....    .....++....|.+|+..   |+|+|+...+.|.+.+  +.+.|.|+|+|-|.
T Consensus        94 e~v~~qk~D~~~~~ke~kv~~Pe----v~r~~~k~~~eRy~in~~~~rfi~~g~k~e~ln~~~~~~~sd~ikW~i~~dlk  169 (390)
T KOG2858|consen   94 ENVVKQKTDSSLVVKEAKVGEPE----VKREKVKGEVERYSINKQEERFIGQGIKEELLNGECVKEESDFIKWEIVDDLK  169 (390)
T ss_pred             cccccccccccccccccccCCcc----cccccccchhhhhhhhhhhhhhcccchhhhhcchhhhhhhccchheeeeeeee
Confidence            7 6666666322     111110    111112222233333333   5566666666666666  56666666666665


Q ss_pred             CC-------ceeEeecccccccchhhHhhhccCCCc---hhhhhhcCCccchhhhhcCCCceEEeeec--cC----Ccce
Q psy15724        179 SG-------NLKHVDEKLIDSTRLCIPLTAHLDQPD---LAFYKAADQPDLAFYKAAGINGLLILMKV--ER----SSKF  242 (360)
Q Consensus       179 ~~-------~~~~v~~rv~E~~tL~~iL~k~l~~~~---~dp~~~~~~~kLk~y~~~~i~~l~vlmK~--E~----~~~y  242 (360)
                      -.       ++.-.....+|+....++.........   .-+.......+|..+...++++.+|++..  +.    ...+
T Consensus       170 v~s~~~il~p~~~k~~~~~eTi~te~~k~~~pr~k~y~clV~e~~k~v~ql~c~~~Rgidd~qf~e~~~s~~~R~~g~I~  249 (390)
T KOG2858|consen  170 VKSEPPILHPVGCKRKSRCETIGTEEAKYRCPRCKRYSCLVPEVKKHVAQLTCNGVRGIDDQQFTEMNLSDVARTAGHIS  249 (390)
T ss_pred             eeccCCCcCchhhhccccccchhhhhccccccchhhhceeccchhhhhhhhcccccccchHHHHHHHhccchhhhcceee
Confidence            10       111111233444433333332222210   00000012223443333466666666652  11    2223


Q ss_pred             EEccCCCcHHHhhcCCEEEECcEEEEEecCC
Q psy15724        243 YILDHTLSIAENLKNKCIIEFPIFYVIFNYE  273 (360)
Q Consensus       243 ~~LD~~kTL~enLrgKtVIEFPTI~V~l~~~  273 (360)
                      -..-+..++...+++-++++-|++.|.++..
T Consensus       250 ~k~~lk~~~s~~~~nf~k~~~~~k~vfl~~~  280 (390)
T KOG2858|consen  250 RKAFLKRPISNKYMNFMKNRARRKGVFLKLL  280 (390)
T ss_pred             hhcccccchhhhhhhhhheeccccchhHHHh
Confidence            3344556777777777777777777776655

>KOG2858|consensus

Probab=99.60  E-value=1.4e-16  Score=156.26  Aligned_cols=195  Identities=26%  Similarity=0.441  Sum_probs=156.9

Q ss_pred             cCcccCCCCCCcccCCCCCCccccccccccccccccccCCCCccccccCCCcchhhhhhhhhh----HHHHHhhhhhccC
Q psy15724         41 GDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSNLELQNDFNL----LEEVSNSLFKYKR  116 (360)
Q Consensus        41 ~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd~t~fVp~~~~~~~~l~~DYnF----Le~i~R~ve~~kr  116 (360)
                      +.|+.|....++|+||+|....|.+.|+++|+.+..|.+.|    ++           +|.+|    |++.+|..+...+
T Consensus       186 ~~~eTi~te~~k~~~pr~k~y~clV~e~~k~v~ql~c~~~R----gi-----------dd~qf~e~~~s~~~R~~g~I~~  250 (390)
T KOG2858|consen  186 SRCETIGTEEAKYRCPRCKRYSCLVPEVKKHVAQLTCNGVR----GI-----------DDQQFTEMNLSDVARTAGHISR  250 (390)
T ss_pred             ccccchhhhhccccccchhhhceeccchhhhhhhhcccccc----cc-----------hHHHHHHHhccchhhhcceeeh
Confidence            88999999999999999999999999999999999999998    33           23333    4556677666666


Q ss_pred             CCccccccCCCCCCchhHHHHHHHHHcCcEEEEcCchhhhccccCcee--ccceEEEEEEEEEECCceeEeecccccccc
Q psy15724        117 DPVKNSVSMYNKLPHPLHILRKYAYMRKTQVKFLPKLFTQHKINTSCV--YKNNLYWRVEWVFVSGNLKHVDEKLIDSTR  194 (360)
Q Consensus       117 d~~~r~~~~~~~lp~~~~~Lr~~a~~RgI~L~~lP~gMsRrk~NtT~~--K~~~i~WtVEWiF~~~~~~~v~~rv~E~~t  194 (360)
                      ++..+....+    .....++..+.+.||.|.+++.++..+.+|+|++  ++..|.|+++--|+.+...+...+++...+
T Consensus       251 k~~lk~~~s~----~~~nf~k~~~~~k~vfl~~~q~~~~e~lenst~~~~~~q~f~~~~~~d~pes~~~~~~nr~p~ekt  326 (390)
T KOG2858|consen  251 KAFLKRPISN----KYMNFMKNRARRKGVFLKLLQNGFTERLENSTFFDKKKQQFCWHVKLDFPESQAEYIENRVPDEKT  326 (390)
T ss_pred             hcccccchhh----hhhhhhheeccccchhHHHhhhhhhhhhccccccccCCceeeeeeeccCccchhhhhcccCCCccc
Confidence            6655433332    2355667788999999999999999999999999  678999999999998888888899999999


Q ss_pred             hhhHhhhccCCCchhhhhhcCCccchhhhhcCCCceEEeeeccC----CcceEEccCCCcHHHhhcCCEEEECc
Q psy15724        195 LCIPLTAHLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVER----SSKFYILDHTLSIAENLKNKCIIEFP  264 (360)
Q Consensus       195 L~~iL~k~l~~~~~dp~~~~~~~kLk~y~~~~i~~l~vlmK~E~----~~~y~~LD~~kTL~enLrgKtVIEFP  264 (360)
                      ...+...++++.+.++   ..+.+++       .+..+.++.+.    ..+||.|||-+++..+|+|+.++|||
T Consensus       327 ~N~~k~p~~D~e~~d~---~~r~r~~-------t~~~~~rk~~y~s~~~~~~ysldPy~p~l~~~~n~l~~ey~  390 (390)
T KOG2858|consen  327 INEIKKPYIDPEKSDP---VIRQRLK-------TGVQILRKIEYMSQNLVRYYSLDPYKPLLDNLRNKLIIEYP  390 (390)
T ss_pred             cccccCCCCCcccccc---hhhccCC-------CCchhhhccchhhhccccccccCCccchhhcccccccccCC
Confidence            9888777888877665   3333332       34445555544    56789999999999999999999998

>KOG2857|consensus

Probab=98.86  E-value=6.9e-10  Score=97.31  Aligned_cols=43  Identities=35%  Similarity=0.925  Sum_probs=38.2

Q ss_pred             ccCcccCCCCCCcccCCCCCCccccccccccccccccccCCCC
Q psy15724         40 LGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRN   82 (360)
Q Consensus        40 ~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd   82 (360)
                      +..|.+|.+.+.||+||+|.++||||.|+|.||..-.|-..-+
T Consensus         5 t~tC~ic~e~~~KYKCpkC~vPYCSl~CfKiHk~tPq~~~ve~   47 (157)
T KOG2857|consen    5 TTTCVICLESEIKYKCPKCSVPYCSLPCFKIHKSTPQCETVED   47 (157)
T ss_pred             eeeehhhhcchhhccCCCCCCccccchhhhhccCCccccccCC
Confidence            6789999999999999999999999999999998667766543

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.77  E-value=7.1e-10  Score=73.58  Aligned_cols=29  Identities=45%  Similarity=1.107  Sum_probs=23.4

Q ss_pred             ccCcccCCCCCCcccCCCCCCccccccccc
Q psy15724         40 LGDCEVCAIEPAKYTCPKCELKTCCLNCVN   69 (360)
Q Consensus        40 ~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k   69 (360)
                      ..+|.||+. .++|+||+|+.++|||+|+|
T Consensus         2 ~~~C~vC~~-~~kY~Cp~C~~~~CSl~C~k   30 (30)
T PF04438_consen    2 RKLCSVCGN-PAKYRCPRCGARYCSLACYK   30 (30)
T ss_dssp             -EEETSSSS-EESEE-TTT--EESSHHHHH
T ss_pred             cCCCccCcC-CCEEECCCcCCceeCcEeEC
Confidence            357999998 99999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>KOG4317|consensus

Probab=98.55  E-value=4e-08  Score=96.06  Aligned_cols=70  Identities=27%  Similarity=0.637  Sum_probs=47.5

Q ss_pred             ccCcccCCCCCCcccCCCCCCccccccccccccccccccCCCCccccccCCCcch--hhhhhhhhhHHHHHhhhhh
Q psy15724         40 LGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNKVKFIPLQKFSN--LELQNDFNLLEEVSNSLFK  113 (360)
Q Consensus        40 ~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd~t~fVp~~~~~~--~~l~~DYnFLe~i~R~ve~  113 (360)
                      -..|.||++..+.||||||..+||||.||+.||.  +|+...-+-.-  ..++..  ++...--+.+|...|..+.
T Consensus         7 ~~~C~ic~vq~~~YtCPRCn~~YCsl~CYr~h~~--~CsE~FyrdqV--~~eL~~~r~d~s~k~km~e~lkr~~q~   78 (383)
T KOG4317|consen    7 FLACGICGVQKREYTCPRCNLLYCSLKCYRNHKH--SCSEKFYRDQV--KQELSGKRADISQKRKMGEELKRKMQK   78 (383)
T ss_pred             eeeccccccccccccCCCCCccceeeeeecCCCc--cchHHHHHHHH--HHHhhhccccccchhHHHHHHHHHHhh
Confidence            4579999999999999999999999999999995  59976422111  011111  2233334556666666554

>KOG3362|consensus

Probab=97.55  E-value=2.3e-05  Score=69.32  Aligned_cols=38  Identities=32%  Similarity=0.822  Sum_probs=33.0

Q ss_pred             CCccCcccCCCCCCcccCCCCCCccccccccccccccccc
Q psy15724         38 SRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELEC   77 (360)
Q Consensus        38 ~~~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C   77 (360)
                      .....|.||| ..++|.|-+||.+|||+.|.+.|.. +-|
T Consensus       116 P~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~Hne-TRC  153 (156)
T KOG3362|consen  116 PLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNE-TRC  153 (156)
T ss_pred             CcchhhhhcC-CCchhHHHhcCCceeechhhhhccc-ccc
Confidence            4456899999 5899999999999999999999974 555

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.72  E-value=0.03  Score=38.27  Aligned_cols=29  Identities=28%  Similarity=0.765  Sum_probs=23.5

Q ss_pred             cccCCCCCCcccCCCC-CCcccccccccccc
Q psy15724         43 CEVCAIEPAKYTCPKC-ELKTCCLNCVNIHK   72 (360)
Q Consensus        43 C~vC~~~~~kY~CP~C-~~~tCSl~C~k~Hk   72 (360)
                      |.+|+....+ +|++| .+.|||.+|-+.|-
T Consensus         1 C~~C~~~~~~-~C~~C~~~~YCs~~Cq~~~w   30 (37)
T PF01753_consen    1 CAVCGKPALK-RCSRCKSVYYCSEECQRADW   30 (37)
T ss_dssp             -TTTSSCSSE-EETTTSSSEESSHHHHHHHH
T ss_pred             CcCCCCCcCC-cCCCCCCEEecCHHHHHHHH
Confidence            7789986666 99999 78899999987764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=91.85  E-value=0.1  Score=39.51  Aligned_cols=24  Identities=33%  Similarity=0.944  Sum_probs=18.7

Q ss_pred             CcccCCC---CCCcccCCCCCCcc-ccc
Q psy15724         42 DCEVCAI---EPAKYTCPKCELKT-CCL   65 (360)
Q Consensus        42 ~C~vC~~---~~~kY~CP~C~~~t-CSl   65 (360)
                      +|.+|..   ....|.||.||++| ||-
T Consensus         1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~   28 (55)
T PF13824_consen    1 LCPVCKKDLPAHVNFECPDCGIPTHCSE   28 (55)
T ss_pred             CCCCCccccccccCCcCCCCCCcCccCH
Confidence            4777876   35799999999987 554

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=85.18  E-value=0.51  Score=30.01  Aligned_cols=18  Identities=28%  Similarity=1.071  Sum_probs=14.0

Q ss_pred             cccC------CCCCCcccCCCCCC
Q psy15724         43 CEVC------AIEPAKYTCPKCEL   60 (360)
Q Consensus        43 C~vC------~~~~~kY~CP~C~~   60 (360)
                      |..|      .+....|.||.|+.
T Consensus         1 C~sC~~~i~~r~~~v~f~CPnCG~   24 (24)
T PF07754_consen    1 CTSCGRPIAPREQAVPFPCPNCGF   24 (24)
T ss_pred             CccCCCcccCcccCceEeCCCCCC
Confidence            6667      55577999999983

It is likely to bind zinc via its four well-conserved cysteine residues.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	360
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	2e-10
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Length = 59

 Score = 55.1 bits (132), Expect = 2e-10
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 35 KKVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKR 73
          +     G C    ++PA+YTCP+C    C L C   H  
Sbjct: 9  EPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT 47

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 56

 Score = 48.9 bits (116), Expect = 3e-08
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 43 CEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIRNK 83
          C +C  E  KY CP C +  C + C   HK   +C+   + 
Sbjct: 15 CVICL-EKPKYRCPACRVPYCSVVCFRKHKE--QCNPETSG 52

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 54/341 (15%), Positives = 108/341 (31%), Gaps = 92/341 (26%)

Query: 1   MESWKVCFELFKSVHLHTVKMDCTTEQNLPPEVEK----KVSRLGDCEVCAIEPA----- 51
           ++   +     +   L    +DC   Q+LP EV      ++S +   E      A     
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNW 347

Query: 52  -KYTCPKCELKTC---CLNCVN--IHKRELECDGI-RNKVKFIPLQKFSNLELQNDFNLL 104
               C K  L T     LN +    +++  +   +       IP    S +      + +
Sbjct: 348 KHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDV 404

Query: 105 EEVSNSLFKY---KRDPVKNSVSMYN----KLPHP-----LH--ILRKYAYMRKTQVKFL 150
             V N L KY   ++ P ++++S+ +              LH  I+  Y   +      L
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

Query: 151 PKLFTQ---------HKINTSCVYKNNLYWRVEWVFVSGNLKHVDEKLIDSTRLCIPLTA 201
              +           H  N     +  L+     VF+  + + +++K+   +       +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLF---RMVFL--DFRFLEQKIRHDSTAWNASGS 519

Query: 202 HLDQPDLAFYKAADQPDLAFYKAAGINGLLILMKVERSSKFYILDHTLSIAENLKNKCII 261
            L+   L          L FYK                   YI D+       +    I+
Sbjct: 520 ILN--TLQ--------QLKFYKP------------------YICDNDPKYERLVNA--IL 549

Query: 262 EFPIFYVIFNYEKDMFDIEYTDVGEAKDPRIQSHSQIENGP 302
           +F     +   E+++   +YTD+       ++     E+  
Sbjct: 550 DF-----LPKIEENLICSKYTDL-------LRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 40/309 (12%), Positives = 91/309 (29%), Gaps = 77/309 (24%)

Query: 90  QKFSNLELQNDFN-LLEEVSN---------SLFKYKRDPVKNSVSMYNKL----PHPLHI 135
           QKF    L+ ++  L+  +            ++  +RD + N   ++ K       P   
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 136 LRKYAYMRKTQVKFLPKLFTQ-----------------HKINTSCVYKNNLYWRVEWVFV 178
           LR+       +++    +                    +K+   C     ++W      +
Sbjct: 140 LRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFW------L 187

Query: 179 S-GNLKHVDEKLIDSTRLCIPLTA-------HLDQPDLAFYKAADQPDLAFYKAAGINGL 230
           +  N    +  L    +L   +         H     L  +    +           N L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 231 LILMKVERSSKFYILDH---TL------SIAENLKNKCIIEFPIFYVIFNYEKD----MF 277
           L+L+ V+ +  +   +     L       + + L         + +       D    + 
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 278 DIEYTDVGEAKDPR--IQSH----SQIENGPKEKLDHVKQTEGEDVHYDCFENEESIDVS 331
            ++Y D      PR  + ++    S I    ++ L      +    H +C +    I+ S
Sbjct: 308 -LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK----HVNCDKLTTIIESS 362

Query: 332 SE--DTSEI 338
               + +E 
Sbjct: 363 LNVLEPAEY 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	360
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	99.51
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	99.13
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	91.26
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	85.7
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	85.47
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	81.33

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.4e-15  Score=111.94  Aligned_cols=47  Identities=26%  Similarity=0.636  Sum_probs=42.8

Q ss_pred             ccCCccCcccCCCCCCcccCCCCCCccccccccccccccccccCCC-Cccc
Q psy15724         36 KVSRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGIR-NKVK   85 (360)
Q Consensus        36 ~~~~~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~r-d~t~   85 (360)
                      -+.++.+|.||+. .+||+||+|+++||||+|+|.||.+  |+|+| ||+.
T Consensus         8 ~~~~~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k~Hk~~--C~~~~~~p~~   55 (56)
T 2yqq_A            8 LKCSTVVCVICLE-KPKYRCPACRVPYCSVVCFRKHKEQ--CNPETSGPSS   55 (56)
T ss_dssp             CCCCCCCCTTTCS-CCSEECTTTCCEESSHHHHHHHHHH--CCCCCSSCCC
T ss_pred             cCCCCCccCcCcC-CCeeeCCCCCCCeeCHHHHHHHHhh--CcCCcCCCCC
Confidence            4567778999999 9999999999999999999999976  99999 9864

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=99.13  E-value=4.4e-12  Score=95.12  Aligned_cols=39  Identities=38%  Similarity=0.996  Sum_probs=34.9

Q ss_pred             cCcccCCC---CCCcccCCCCCCccccccccccccccccccCCCC
Q psy15724         41 GDCEVCAI---EPAKYTCPKCELKTCCLNCVNIHKRELECDGIRN   82 (360)
Q Consensus        41 ~~C~vC~~---~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~rd   82 (360)
                      .+|.||+.   +.+||+||+|+++||||.|+|.||   .|++..-
T Consensus        12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~Hk---~Cse~F~   53 (59)
T 1x4s_A           12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHG---TCAENFY   53 (59)
T ss_dssp             EEECSSCTTCCEEECEECTTTCCEESSHHHHHHHC---CGGGGTS
T ss_pred             CcCcCCCCCcCCCccccCcCCCCCccChHHHHHHh---HhCHHHH
Confidence            48999995   679999999999999999999998   6998753

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=91.26  E-value=0.078  Score=38.93  Aligned_cols=41  Identities=24%  Similarity=0.499  Sum_probs=31.9

Q ss_pred             CCccCcccCCCCCCcccCCCCC-Cccccccc----cccccccccccCCC
Q psy15724         38 SRLGDCEVCAIEPAKYTCPKCE-LKTCCLNC----VNIHKRELECDGIR   81 (360)
Q Consensus        38 ~~~~~C~vC~~~~~kY~CP~C~-~~tCSl~C----~k~Hk~~~~C~g~r   81 (360)
                      .....|..|+. .+..+|.+|. +.|||.+|    ++.||.  .|....
T Consensus        11 ~~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~--~C~~~~   56 (60)
T 2od1_A           11 DSSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWEKHHH--ICGQTL   56 (60)
T ss_dssp             CCSSCCTTTSS-CCCEECTTTSCCEESSHHHHHHHHHHHTT--TSSCSS
T ss_pred             CCCCccccCCC-cccccCCCCCCeeecCHHHHHHHHHHHhH--HHcccc
Confidence            44568999998 6899999997 57999999    566774  576543

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.70  E-value=0.48  Score=36.15  Aligned_cols=38  Identities=18%  Similarity=0.460  Sum_probs=28.0

Q ss_pred             cCCccCcccCCCCCCc-----ccCCCCCCcccccccccccccccccc
Q psy15724         37 VSRLGDCEVCAIEPAK-----YTCPKCELKTCCLNCVNIHKRELECD   78 (360)
Q Consensus        37 ~~~~~~C~vC~~~~~k-----Y~CP~C~~~tCSl~C~k~Hk~~~~C~   78 (360)
                      +.....|..|.+...-     |+| +|+..+|+.-   +|..+.+|+
T Consensus        12 ~~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H---Ry~e~H~C~   54 (67)
T 1x4w_A           12 QKSRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH---RLPEQHDCT   54 (67)
T ss_dssp             CSCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT---CSTGGGTCS
T ss_pred             CccCCcchhhCCeecccccCceEe-cCCCEehhcc---CCccccCCc
Confidence            3445789999998874     899 9999999962   333455665

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=85.47  E-value=0.33  Score=35.46  Aligned_cols=32  Identities=25%  Similarity=0.524  Sum_probs=26.4

Q ss_pred             CccCcccCCCCCCcccCCCCCC-ccccccccccc
Q psy15724         39 RLGDCEVCAIEPAKYTCPKCEL-KTCCLNCVNIH   71 (360)
Q Consensus        39 ~~~~C~vC~~~~~kY~CP~C~~-~tCSl~C~k~H   71 (360)
                      ....|..|+. .+..+|.+|.. .|||.+|-+.|
T Consensus        14 ~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~~   46 (60)
T 2dj8_A           14 SSESCWNCGR-KASETCSGCNTARYCGSFCQHKD   46 (60)
T ss_dssp             CSCCCSSSCS-CCCEECTTTSCCEESSHHHHHHT
T ss_pred             CCcccccCCC-CCcccCCCCCCEeeeCHHHHHHH
Confidence            4568999998 68999999976 69999996554

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=81.33  E-value=0.35  Score=33.98  Aligned_cols=32  Identities=22%  Similarity=0.520  Sum_probs=24.5

Q ss_pred             CccCcccCCCCCCcccCCCCCC-ccccccccccc
Q psy15724         39 RLGDCEVCAIEPAKYTCPKCEL-KTCCLNCVNIH   71 (360)
Q Consensus        39 ~~~~C~vC~~~~~kY~CP~C~~-~tCSl~C~k~H   71 (360)
                      ....|..|+. ++..+|.+|.. .|||.+|-+.|
T Consensus         8 ~~~~C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~~   40 (52)
T 2jw6_A            8 KEQSCVNCGR-EAMSECTGCHKVNYCSTFCQRKD   40 (52)
T ss_dssp             ---CCSSSSS-SCSEECTTTCSSEESSHHHHHHH
T ss_pred             cCCcCCCCCC-CCcCcCCCCCCEeecCHHHHHHH
Confidence            4568999998 58999999975 69999996554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	360
d1x4sa1	46	g.85.1.2 (A:8-53) Zinc finger HIT domain containin	4e-11

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 4e-11
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 38 SRLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKR 73
             G C    ++PA+YTCP+C    C L C   H  
Sbjct: 5  GPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	360
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	99.28
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	93.99
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	92.91
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	92.11
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	87.1
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	85.83
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	80.35

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-13  Score=97.23  Aligned_cols=39  Identities=36%  Similarity=0.900  Sum_probs=35.1

Q ss_pred             CccCcccCCCCCCcccCCCCCCccccccccccccccccccCC
Q psy15724         39 RLGDCEVCAIEPAKYTCPKCELKTCCLNCVNIHKRELECDGI   80 (360)
Q Consensus        39 ~~~~C~vC~~~~~kY~CP~C~~~tCSl~C~k~Hk~~~~C~g~   80 (360)
                      ..++|.||..+++||+||+|+++||||+|+|.||.   |+..
T Consensus         6 ~~~lC~vC~~~~~KY~CP~C~~~yCSL~CyK~Hk~---Cse~   44 (46)
T d1x4sa1           6 PCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGT---CAEN   44 (46)
T ss_dssp             EECSSCTTCCEEECEECTTTCCEESSHHHHHHHCC---GGGG
T ss_pred             CCccChhhhCccccccCCCCCCceechHHHhhhhh---cccc
Confidence            46789999999999999999999999999999984   7743

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.0075  Score=41.11  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=28.0

Q ss_pred             cCCccCcccCCCCCCcccCCCC-CCccccccccccc
Q psy15724         37 VSRLGDCEVCAIEPAKYTCPKC-ELKTCCLNCVNIH   71 (360)
Q Consensus        37 ~~~~~~C~vC~~~~~kY~CP~C-~~~tCSl~C~k~H   71 (360)
                      ......|.+|+. ++..+|.+| .+.|||.+|-+.|
T Consensus         5 ~~~~~~C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~d   39 (47)
T d2dj8a1           5 EDSSESCWNCGR-KASETCSGCNTARYCGSFCQHKD   39 (47)
T ss_dssp             CCCSCCCSSSCS-CCCEECTTTSCCEESSHHHHHHT
T ss_pred             ccCCCcCCCCCc-cccccCCCCCCeeeCCHHHHHHH
Confidence            356678999997 677799999 5899999997655

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.0097  Score=38.81  Aligned_cols=29  Identities=24%  Similarity=0.586  Sum_probs=24.5

Q ss_pred             cccCCCCCCcccCCCCC-Ccccccccccccc
Q psy15724         43 CEVCAIEPAKYTCPKCE-LKTCCLNCVNIHK   72 (360)
Q Consensus        43 C~vC~~~~~kY~CP~C~-~~tCSl~C~k~Hk   72 (360)
                      |.+|+. ++..+|++|. +.|||.+|-+.|=
T Consensus         2 C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~~W   31 (38)
T d2jw6a1           2 CVNCGR-EAMSECTGCHKVNYCSTFCQRKDW   31 (38)
T ss_dssp             CSSSSS-SCSEECTTTCSSEESSHHHHHHHT
T ss_pred             ccccCc-cccccCCCCCCEeeCCHHHHHHHH
Confidence            889997 5788999999 4999999977654

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.021  Score=38.83  Aligned_cols=30  Identities=30%  Similarity=0.790  Sum_probs=25.4

Q ss_pred             CcccCCCCCCcccCCCCC-Ccccccccccccc
Q psy15724         42 DCEVCAIEPAKYTCPKCE-LKTCCLNCVNIHK   72 (360)
Q Consensus        42 ~C~vC~~~~~kY~CP~C~-~~tCSl~C~k~Hk   72 (360)
                      .|..|+. ++-.+|.+|. +.|||.+|-+.|-
T Consensus        10 ~C~~Cg~-~~~~~Cs~C~~~~YCs~~CQ~~dW   40 (47)
T d2dana1          10 RCAYCSA-EASKRCSRCQNEWYCCRECQVKHW   40 (47)
T ss_dssp             CCSSSCC-CCCEECTTTSCSEESSHHHHHHTH
T ss_pred             cCcCCCC-hhhccCCCCCCEeeCCHHHHHHHH
Confidence            5999998 5677999997 7999999977663

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.10  E-value=0.23  Score=36.72  Aligned_cols=28  Identities=21%  Similarity=0.624  Sum_probs=22.4

Q ss_pred             cCCccCcccCCCCCC--cccCCCCCCccccc
Q psy15724         37 VSRLGDCEVCAIEPA--KYTCPKCELKTCCL   65 (360)
Q Consensus        37 ~~~~~~C~vC~~~~~--kY~CP~C~~~tCSl   65 (360)
                      +.+..+|.+|.++-.  -|+| +|+..+|++
T Consensus        22 k~k~~RC~~C~KKl~l~~~~C-rCg~~FC~~   51 (74)
T d1wfla_          22 KPKKNRCFMCRKKVGLTGFDC-RCGNLFCGL   51 (74)
T ss_dssp             CSCTTBCSSSCCBCGGGCEEC-TTSCEECSS
T ss_pred             CCCCCcChhhCCcccceeeEc-cCCCEehhh
Confidence            345678999997644  5999 899999986

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.83  E-value=0.29  Score=37.07  Aligned_cols=29  Identities=21%  Similarity=0.666  Sum_probs=23.3

Q ss_pred             ccCCccCcccCCCCCC---cccCCCCCCccccc
Q psy15724         36 KVSRLGDCEVCAIEPA---KYTCPKCELKTCCL   65 (360)
Q Consensus        36 ~~~~~~~C~vC~~~~~---kY~CP~C~~~tCSl   65 (360)
                      ++....+|.+|..+-.   -|+| +|+..+|+.
T Consensus        21 kk~~~~RC~~C~KKl~l~~~~~C-rCg~~FC~~   52 (85)
T d1wffa_          21 KKKIMKHCFLCGKKTGLATSFEC-RCGNNFCAS   52 (85)
T ss_dssp             CCCCCCBCSSSCCBCSSSSCEEC-TTCCEECTT
T ss_pred             ccccCCcChhcCCeecCCcCeec-CCCCEehhh
Confidence            4555568999998764   4999 799999986

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.35  E-value=0.7  Score=34.04  Aligned_cols=28  Identities=21%  Similarity=0.565  Sum_probs=22.1

Q ss_pred             cCCccCcccCCCCCC--cccCCCCCCccccc
Q psy15724         37 VSRLGDCEVCAIEPA--KYTCPKCELKTCCL   65 (360)
Q Consensus        37 ~~~~~~C~vC~~~~~--kY~CP~C~~~tCSl   65 (360)
                      +.+...|.+|.++..  -|+| +|+..+|+.
T Consensus        22 k~kk~RC~~C~KKl~l~~~~C-rCg~~FC~~   51 (74)
T d1wfpa_          22 KSTATRCLSCNKKVGVTGFKC-RCGSTFCGT   51 (74)
T ss_dssp             TCCCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred             CCCCCcChhcCCccCCCceec-CCCChhhhc
Confidence            344788999997543  6889 899999986