Psyllid ID: psy15725

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPPED
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEEccccccccccccccEEEEEEEEEEEccEEEEEEEEEcccccccccccccHHccccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEEEcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccHHHcHHHHHHHHHHHccccccEEEEEEcHHHHHHccccHHHHHHHHHHHcccEEEEccccccccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccHHHHcccccccc
Coil and Loop (DISEMBL)
msssgdfgnplrKFKLVFlgeqsvgktSLITRFmydsfdntyqatIVGKTSLITRFmydsfdntyqaTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDItnansfhqtskwiddvrterGSDVIIMLVGSietnfthlsfhhansfhqtskwiddvrtergSDVIIMLVGnktdlsdkrqvstEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDItnansfhqtskwiddvrtergSDVIIMLVGnktdlsdkrqvstEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAaalpgmdstenkpped
Flexible Loop (DISEMBL)
msssgdfgnplRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFrslipsyirdSTVAVVVYDITnansfhqtskwiddvrTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIimlvgnktdlsdkrqvsteegerkakeLNVMFIETsakagynvkQVRLQLWDTAGQERFRslipsyirdSTVAVVVYDITnansfhqtskwiddvrtERGSDVIimlvgnktdlsdkrqvsteegerkakeLNVMFIETsakagynvkQLFRRVAaalpgmdstenkpped
Low Complexity Region (SEG)
MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPPED
Disordered region (IsUnstruct)
**********LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN*********************LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGN*********************LNVMFIETSAKAGYNVKQLFRRVAAA**************
Disordered Region (DISOPRED)
*************FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH******************GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDT********************VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV*****************
Disordered Region (DISEMBL)
MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL*************KAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL*************KAKELNVMFIETSAKAGYNVKQLFRRVAAALPG***********
Disordered Region (DISPRO)
******FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPPED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
Q5RAV6	208	Ras-related protein Rab-6	yes	N/A	0.467	0.798	0.686	2e-79
P20340	208	Ras-related protein Rab-6	yes	N/A	0.467	0.798	0.686	2e-79
Q9WVB1	208	Ras-related protein Rab-6	yes	N/A	0.467	0.798	0.686	2e-79
P35279	208	Ras-related protein Rab-6	yes	N/A	0.467	0.798	0.686	2e-79
Q1KME6	208	Ras-related protein Rab-6	yes	N/A	0.467	0.798	0.673	2e-78
Q22782	205	Ras-related protein Rab-6	yes	N/A	0.501	0.868	0.641	3e-78
P61294	208	Ras-related protein Rab-6	no	N/A	0.467	0.798	0.665	4e-77
Q9NRW1	208	Ras-related protein Rab-6	no	N/A	0.467	0.798	0.665	4e-77
A6QR46	208	Ras-related protein Rab-6	no	N/A	0.467	0.798	0.665	4e-77
P34213	205	Ras-related protein Rab-6	no	N/A	0.456	0.790	0.634	7e-72

>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QT+KWIDDVRTERGSDVIIML                                  
Sbjct: 98  VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).
Pongo abelii (taxid: 9601)

>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QT+KWIDDVRTERGSDVIIML                                  
Sbjct: 98  VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2

 Score =  296 bits (757), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QT+KWIDDVRTERGSDVIIML                                  
Sbjct: 98  VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Rattus norvegicus (taxid: 10116)

>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4

 Score =  296 bits (757), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 162/230 (70%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QT+KWIDDVRTERGSDVIIML                                  
Sbjct: 98  VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Mus musculus (taxid: 10090)

>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3

 Score =  293 bits (749), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/230 (67%), Positives = 160/230 (69%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS  AVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QT+KWIDDVRTERGSDVIIML                                  
Sbjct: 98  VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Gallus gallus (taxid: 9031)

>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1

 Score =  292 bits (747), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 161/251 (64%), Positives = 168/251 (66%), Gaps = 73/251 (29%)

Query: 6   DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
           DFGNPL+KFKLVFLGEQSVGKTSL                       ITRFMYDSFDNTY
Sbjct: 3   DFGNPLKKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTY 39

Query: 66  QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
           QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN+NSFH
Sbjct: 40  QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFH 99

Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
           QTSKWIDDVRTERGSDVIIML                                       
Sbjct: 100 QTSKWIDDVRTERGSDVIIML--------------------------------------- 120

Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS 245
             VGNKTDLSDKRQV+T+EGERKAKELNVMFIETSAKAGYNVKQ+           R   
Sbjct: 121 --VGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLF---------RRIAG 169

Query: 246 LIPSYIRDSTV 256
            +P  I+D  V
Sbjct: 170 ALPGIIKDDPV 180

Protein transport. Probably involved in vesicular traffic.

Caenorhabditis elegans (taxid: 6239)

>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1

 Score =  288 bits (737), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/230 (66%), Positives = 161/230 (70%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166

Seems to have a role in retrograde membrane traffic at the level of the Golgi complex. May function in retrograde transport in neuronal cells.

Mus musculus (taxid: 10090)

>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1

 Score =  288 bits (737), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/230 (66%), Positives = 161/230 (70%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166

Seems to have a role in retrograde membrane traffic at the level of the Golgi complex. May function in retrograde transport in neuronal cells.

Homo sapiens (taxid: 9606)

>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1

 Score =  288 bits (737), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 153/230 (66%), Positives = 161/230 (70%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSAGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  LNSFQQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 166

Seems to have a role in retrograde membrane traffic at the level of the Golgi complex. May function in retrograde transport in neuronal cells.

Bos taurus (taxid: 9913)

>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1

 Score =  271 bits (692), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 144/227 (63%), Positives = 157/227 (69%), Gaps = 65/227 (28%)

Query: 5   GDF-GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
            DF  N L+KFKLVFLGEQSVGKTS+I                       TRFMYDSFDN
Sbjct: 2   ADFTNNALKKFKLVFLGEQSVGKTSII-----------------------TRFMYDSFDN 38

Query: 64  TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
           TYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITNANS
Sbjct: 39  TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANS 98

Query: 124 FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDV 183
           FHQT+KW+DDVR ERG DVII+L                                     
Sbjct: 99  FHQTTKWVDDVRNERGCDVIIVL------------------------------------- 121

Query: 184 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
               VGNKTDL+DKRQVSTE+GE+KA++LNVMFIETSAKAGYNVKQ+
Sbjct: 122 ----VGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQL 164

Protein transport. Probably involved in vesicular traffic.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
307189589	209	Ras-related protein Rab-6A [Camponotus f	0.467	0.794	0.717	2e-81
345494735	209	PREDICTED: ras-related protein Rab-6A-li	0.467	0.794	0.717	2e-81
157112176	210	rab6 [Aedes aegypti] gi|108878120|gb|EAT	0.467	0.790	0.717	4e-81
157112172	209	rab6 [Aedes aegypti] gi|157112174|ref|XP	0.467	0.794	0.717	4e-81
158297778	209	AGAP011363-PA [Anopheles gambiae str. PE	0.467	0.794	0.717	5e-81
189233646	324	PREDICTED: similar to rab6 [Tribolium ca	0.467	0.512	0.713	6e-81
270014377	209	hypothetical protein TcasGA2_TC001600 [T	0.467	0.794	0.713	1e-80
340718722	209	PREDICTED: ras-related protein Rab-6A-li	0.467	0.794	0.708	2e-80
383848737	209	PREDICTED: ras-related protein Rab-6A-li	0.467	0.794	0.708	3e-80
48096836	209	PREDICTED: ras-related protein Rab-6A [A	0.467	0.794	0.708	3e-80

>gi|307189589|gb|EFN73950.1| Ras-related protein Rab-6A [Camponotus floridanus] gi|307196069|gb|EFN77792.1| Ras-related protein Rab-6A [Harpegnathos saltator] gi|332025967|gb|EGI66120.1| Ras-related protein Rab-6A [Acromyrmex echinatior]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MSSSGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           ANSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494735|ref|XP_001604718.2| PREDICTED: ras-related protein Rab-6A-like [Nasonia vitripennis]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MSSSGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           ANSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112176|ref|XP_001657425.1| rab6 [Aedes aegypti] gi|108878120|gb|EAT42345.1| AAEL006091-PB [Aedes aegypti]

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MSSSGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           ANSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112172|ref|XP_001657423.1| rab6 [Aedes aegypti] gi|157112174|ref|XP_001657424.1| rab6 [Aedes aegypti] gi|108878119|gb|EAT42344.1| AAEL006091-PA [Aedes aegypti] gi|403182767|gb|EJY57618.1| AAEL006091-PC [Aedes aegypti]

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MSSSGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           ANSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297778|ref|XP_001238010.2| AGAP011363-PA [Anopheles gambiae str. PEST] gi|157014741|gb|EAU76291.2| AGAP011363-PA [Anopheles gambiae str. PEST]

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MSSSGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           ANSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233646|ref|XP_972453.2| PREDICTED: similar to rab6 [Tribolium castaneum]

 Score =  307 bits (786), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+SGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 116 MSTSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 152

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 153 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 212

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           ANSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 213 ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 238

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 239 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 281

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014377|gb|EFA10825.1| hypothetical protein TcasGA2_TC001600 [Tribolium castaneum]

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/230 (71%), Positives = 166/230 (72%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+SGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSTSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           ANSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 166

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718722|ref|XP_003397812.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Bombus terrestris] gi|350409818|ref|XP_003488853.1| PREDICTED: ras-related protein Rab-6A-like isoform 2 [Bombus impatiens]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MSSSGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           ANSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLGDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQL 166

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848737|ref|XP_003700004.1| PREDICTED: ras-related protein Rab-6A-like isoform 1 [Megachile rotundata]

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 163/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MSSSGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  PNSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDLSDKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLSDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQL 166

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48096836|ref|XP_392533.1| PREDICTED: ras-related protein Rab-6A [Apis mellifera] gi|380012436|ref|XP_003690289.1| PREDICTED: ras-related protein Rab-6A-like [Apis florea]

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 163/230 (70%), Positives = 164/230 (71%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MSSSGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 97

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           ANSFHQTSKWIDDVRTERGSDVIIML                                  
Sbjct: 98  ANSFHQTSKWIDDVRTERGSDVIIML---------------------------------- 123

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLGDKRQVSMEEGERKAKELNVMFIETSAKAGYNVKQL 166

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
UNIPROTKB|J9NYJ8	208	RAB6A "Uncharacterized protein	0.360	0.615	0.867	4.1e-77
FB|FBgn0015797	208	Rab6 "Rab6" [Drosophila melano	0.360	0.615	0.968	2.1e-61
UNIPROTKB|P20340	208	RAB6A "Ras-related protein Rab	0.360	0.615	0.898	9.6e-57
UNIPROTKB|Q5RAV6	208	RAB6A "Ras-related protein Rab	0.360	0.615	0.898	9.6e-57
MGI|MGI:894313	208	Rab6a "RAB6A, member RAS oncog	0.360	0.615	0.898	9.6e-57
RGD|619737	208	Rab6a "RAB6A, member RAS oncog	0.360	0.615	0.898	9.6e-57
UNIPROTKB|J9P652	186	RAB6A "Uncharacterized protein	0.360	0.688	0.890	1.2e-56
UNIPROTKB|F1P1I5	169	F1P1I5 "Uncharacterized protei	0.360	0.757	0.882	2.5e-56
ZFIN|ZDB-GENE-040426-2849	208	rab6a "RAB6A, member RAS oncog	0.360	0.615	0.882	5.3e-56
UNIPROTKB|Q1KME6	208	RAB6A "Ras-related protein Rab	0.360	0.615	0.882	5.3e-56

UNIPROTKB|J9NYJ8 RAB6A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 565 (203.9 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
 Identities = 111/128 (86%), Positives = 119/128 (92%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + +RLQLWDTAGQERFRSLIPS IRDS  AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct:    60 RTIRLQLWDTAGQERFRSLIPSNIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct:   120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179

Query:   348 TENKPPED 355
             T+++  ED
Sbjct:   180 TQDRSRED 187

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

FB|FBgn0015797 Rab6 "Rab6" [Drosophila melanogaster (taxid:7227)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 124/128 (96%), Positives = 125/128 (97%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct:    59 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 118

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS
Sbjct:   119 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 178

Query:   348 TENKPPED 355
             TENKP ED
Sbjct:   179 TENKPSED 186

GO:0003924 "GTPase activity" evidence=ISS

GO:0001745 "compound eye morphogenesis" evidence=IGI

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007293 "germarium-derived egg chamber formation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP

GO:0006887 "exocytosis" evidence=IMP

GO:0031982 "vesicle" evidence=ISS

GO:0045467 "R7 cell development" evidence=IMP

GO:0060078 "regulation of postsynaptic membrane potential" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

UNIPROTKB|P20340 RAB6A "Ras-related protein Rab-6A" [Homo sapiens (taxid:9606)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 115/128 (89%), Positives = 122/128 (95%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct:    60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct:   120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179

Query:   348 TENKPPED 355
             T+++  ED
Sbjct:   180 TQDRSRED 187

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000042 "protein targeting to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0018125 "peptidyl-cysteine methylation" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0034067 "protein localization to Golgi apparatus" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0072385 "minus-end-directed organelle transport along microtubule" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|Q5RAV6 RAB6A "Ras-related protein Rab-6A" [Pongo abelii (taxid:9601)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 115/128 (89%), Positives = 122/128 (95%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct:    60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct:   120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179

Query:   348 TENKPPED 355
             T+++  ED
Sbjct:   180 TQDRSRED 187

GO:0000042 "protein targeting to Golgi" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

MGI|MGI:894313 Rab6a "RAB6A, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 115/128 (89%), Positives = 122/128 (95%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct:    60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct:   120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179

Query:   348 TENKPPED 355
             T+++  ED
Sbjct:   180 TQDRSRED 187

GO:0000042 "protein targeting to Golgi" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=ISO

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0018125 "peptidyl-cysteine methylation" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0032781 "positive regulation of ATPase activity" evidence=ISO

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

RGD|619737 Rab6a "RAB6A, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 115/128 (89%), Positives = 122/128 (95%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct:    60 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct:   120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179

Query:   348 TENKPPED 355
             T+++  ED
Sbjct:   180 TQDRSRED 187

GO:0000042 "protein targeting to Golgi" evidence=ISO;ISS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IMP;IDA

GO:0003924 "GTPase activity" evidence=ISO;ISS;TAS

GO:0005525 "GTP binding" evidence=IEA;ISO;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISO;ISS;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO;ISS;TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO;IDA

GO:0018125 "peptidyl-cysteine methylation" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0032482 "Rab protein signal transduction" evidence=IC

GO:0032781 "positive regulation of ATPase activity" evidence=IDA

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0048193 "Golgi vesicle transport" evidence=TAS

GO:0051117 "ATPase binding" evidence=IPI

UNIPROTKB|J9P652 RAB6A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 114/128 (89%), Positives = 122/128 (95%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + +RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct:    38 RTIRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 97

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct:    98 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 157

Query:   348 TENKPPED 355
             T+++  ED
Sbjct:   158 TQDRSRED 165

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1P1I5 F1P1I5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 113/128 (88%), Positives = 120/128 (93%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + VRLQLWDTAGQERFRSLIPSYIRDST+AVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct:    21 RTVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 80

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDL+DKRQ++TEEGE++AKELNVMFIETSAK GYNVKQLFRRVAAALPGMDS
Sbjct:    81 IIMLVGNKTDLADKRQITTEEGEQRAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMDS 140

Query:   348 TENKPPED 355
             T  K  ED
Sbjct:   141 TPEKSKED 148

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2849 rab6a "RAB6A, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 113/128 (88%), Positives = 120/128 (93%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + +RLQLWDTAGQERFRSLIPSYIRDS  AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct:    60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct:   120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179

Query:   348 TENKPPED 355
             T++K  ED
Sbjct:   180 TQDKSRED 187

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q1KME6 RAB6A "Ras-related protein Rab-6A" [Gallus gallus (taxid:9031)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 113/128 (88%), Positives = 120/128 (93%)

Query:   228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             + +RLQLWDTAGQERFRSLIPSYIRDS  AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct:    60 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119

Query:   288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
             IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct:   120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179

Query:   348 TENKPPED 355
             T++K  ED
Sbjct:   180 TQDKSRED 187

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000042 "protein targeting to Golgi" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1KME6	RAB6A_CHICK	No assigned EC number	0.6739	0.4676	0.7980	yes	N/A
P35279	RAB6A_MOUSE	No assigned EC number	0.6869	0.4676	0.7980	yes	N/A
O80501	RAH1B_ARATH	No assigned EC number	0.5810	0.4450	0.7596	yes	N/A
Q55FK2	RAB6_DICDI	No assigned EC number	0.5772	0.4394	0.75	yes	N/A
Q22782	RAB6B_CAEEL	No assigned EC number	0.6414	0.5014	0.8682	yes	N/A
Q5RAV6	RAB6A_PONAB	No assigned EC number	0.6869	0.4676	0.7980	yes	N/A
P17608	RYH1_SCHPO	No assigned EC number	0.5955	0.4535	0.8009	yes	N/A
Q9WVB1	RAB6A_RAT	No assigned EC number	0.6869	0.4676	0.7980	yes	N/A
P20340	RAB6A_HUMAN	No assigned EC number	0.6869	0.4676	0.7980	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	355
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-95
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-75
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	9e-67
pfam00071	162	pfam00071, Ras, Ras family	7e-64
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	9e-64
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-58
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-54
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	7e-54
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-53
pfam00071	162	pfam00071, Ras, Ras family	2e-52
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-51
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-49
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-45
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-45
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-43
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-42
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-40
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-39
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-39
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-38
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-37
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-37
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-37
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-37
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	5e-37
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-36
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-36
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-35
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-35
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	4e-35
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-35
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	5e-35
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	8e-35
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-34
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-34
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	7e-34
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-33
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-32
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	4e-32
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	4e-32
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-31
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-30
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-30
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-30
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-30
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-30
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	8e-30
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-29
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-29
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	8e-29
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	9e-29
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-28
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-28
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-28
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	9e-28
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-27
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-26
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	9e-26
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-25
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-25
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-25
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-25
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	4e-25
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-25
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	9e-25
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-24
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-24
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-24
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-24
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-24
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	9e-24
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-23
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	5e-23
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-23
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	7e-23
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-22
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-22
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	4e-22
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-22
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	5e-22
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-22
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	6e-22
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-21
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-21
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-21
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-21
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	6e-21
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-20
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-20
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-20
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-20
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-20
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-19
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	9e-19
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-18
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-18
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	5e-18
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	7e-18
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-17
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-17
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-17
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-17
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-17
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-17
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	4e-17
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	5e-17
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	7e-17
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	8e-17
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	8e-17
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-16
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-16
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-16
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	4e-16
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-16
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-15
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	6e-15
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	6e-15
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-14
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-14
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	3e-14
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-14
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	5e-14
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	7e-14
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-13
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-13
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-13
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-13
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-13
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-13
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-13
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	5e-13
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-12
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	3e-12
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-12
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-12
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	5e-12
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	5e-12
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	8e-12
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-11
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-11
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-11
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	5e-11
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	5e-11
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	7e-11
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	8e-11
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	8e-11
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-10
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-10
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-09
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-09
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-09
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-09
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	6e-09
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-08
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-08
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	6e-08
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	7e-08
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-07
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-07
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-07
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	6e-07
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	6e-07
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	6e-07
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	8e-07
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-06
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-06
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-06
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-06
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-05
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	1e-05
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-05
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-05
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-05
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	5e-05
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	9e-05
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-04
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-04
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	4e-04
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	9e-04
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	0.001
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	0.001
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	0.001
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	0.002
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	0.003

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  281 bits (720), Expect = 1e-95
 Identities = 131/216 (60%), Positives = 142/216 (65%), Gaps = 64/216 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            KLVFLG+QSVGKTS+ITRFMYD+FDN YQATI                       GIDF
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATI-----------------------GIDF 37

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
           LSKTMY++D+TVRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN             
Sbjct: 38  LSKTMYVDDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN------------- 84

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                         SF  T KWIDDVR ERG+DVII+LVGNKTD
Sbjct: 85  ----------------------------RQSFDNTDKWIDDVRDERGNDVIIVLVGNKTD 116

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
           LSDKRQVSTEEGE+KAKE N MFIETSAKAG+NVKQ
Sbjct: 117 LSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQ 152

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  229 bits (585), Expect = 3e-75
 Identities = 97/118 (82%), Positives = 106/118 (89%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            + K VRLQLWDTAGQERFRSLIPSYIRDS+VAVVVYDITN  SF  T KWIDDVR ERG
Sbjct: 44  VDDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG 103

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +DVII+LVGNKTDLSDKRQVSTEEGE+KAKE N MFIETSAKAG+NVKQLF+++A AL
Sbjct: 104 NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  207 bits (529), Expect = 9e-67
 Identities = 72/184 (39%), Positives = 103/184 (55%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL++RF    F   Y++TIG+DF +KT+ ++ + V+LQ+WDTAGQERFRS+  SY 
Sbjct: 11  VGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDITN  SF     W+ ++R                         +A+   
Sbjct: 71  RGAVGALLVYDITNRESFENLENWLKELRE------------------------YAS--- 103

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +V+IMLVGNK+DL ++RQVS EE E  A+E  + F ETSAK   N
Sbjct: 104 --------------PNVVIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTN 149

Query: 227 VKQV 230
           V++ 
Sbjct: 150 VEEA 153

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  200 bits (510), Expect = 7e-64
 Identities = 75/184 (40%), Positives = 103/184 (55%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ RF  + F   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQERFR+L P Y 
Sbjct: 10  VGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYY 69

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDIT+ +SF    KW++++                          HA    
Sbjct: 70  RGAQGFLLVYDITSRDSFENVKKWLEEIL------------------------RHA---- 101

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +V I+LVGNK DL D+R VSTEEGE  AKEL + F+ETSAK   N
Sbjct: 102 -------------DENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNEN 148

Query: 227 VKQV 230
           V++ 
Sbjct: 149 VEEA 152

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  199 bits (509), Expect = 9e-64
 Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK+V +G+  VGKTSL+ RF+ + F   Y++TI                       G+DF
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTI-----------------------GVDF 37

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            SKT+ ++ + V+LQ+WDTAGQERFRS+  SY R +  A++VYD+TN  SF    KW+++
Sbjct: 38  KSKTIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNE 97

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           ++ E                                            ++ I+LVGNK+D
Sbjct: 98  LK-EYAPP----------------------------------------NIPIILVGNKSD 116

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           L D+RQVSTEE ++ AKE  ++F ETSAK G NV +    L
Sbjct: 117 LEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  185 bits (472), Expect = 3e-58
 Identities = 76/224 (33%), Positives = 111/224 (49%), Gaps = 64/224 (28%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           +FKLV LG+ SVGK+S++ RF+ + F    Q +                      TIG  
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSE-NQES----------------------TIGAA 37

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
           FL++T+ L+D TV+ ++WDTAGQER+RSL P Y R +  A+VVYDIT+  SF +   W+ 
Sbjct: 38  FLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVK 97

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
           +++                         H                    +++I L GNK 
Sbjct: 98  ELQ------------------------EHGP-----------------PNIVIALAGNKA 116

Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWD 236
           DL  KRQVSTEE +  A E  ++F+ETSAK G NV ++  ++  
Sbjct: 117 DLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIAR 160

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  175 bits (446), Expect = 3e-54
 Identities = 58/112 (51%), Positives = 78/112 (69%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V+LQ+WDTAGQERFRS+  SY R +  A++VYDITN  SF     W+ ++R     +V
Sbjct: 47  KRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNV 106

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +IMLVGNK+DL ++RQVS EE E  A+E  + F ETSAK   NV++ F  +A
Sbjct: 107 VIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  174 bits (443), Expect = 7e-54
 Identities = 96/172 (55%), Positives = 110/172 (63%), Gaps = 41/172 (23%)

Query: 57  MYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVY 116
           MYD+FDN YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQERFRSLIPSYIRDS  A+VVY
Sbjct: 1   MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60

Query: 117 DITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR 176
           DITN                                           SF  T+KWI D+ 
Sbjct: 61  DITN-----------------------------------------RQSFENTTKWIQDIL 79

Query: 177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
            ERG DVII LVGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K
Sbjct: 80  NERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131

Length = 176

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  172 bits (439), Expect = 3e-53
 Identities = 58/115 (50%), Positives = 83/115 (72%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            + K+V+LQ+WDTAGQERFRS+  SY R +  A++VYD+TN  SF    KW+++++    
Sbjct: 44  VDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAP 103

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            ++ I+LVGNK+DL D+RQVSTEE ++ AKE  ++F ETSAK G NV + F  +A
Sbjct: 104 PNIPIILVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  170 bits (434), Expect = 2e-52
 Identities = 59/116 (50%), Positives = 80/116 (68%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFR+L P Y R +   ++VYDIT+ +SF    KW++++      +V
Sbjct: 46  KTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENV 105

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            I+LVGNK DL D+R VSTEEGE  AKEL + F+ETSAK   NV++ F  +A  + 
Sbjct: 106 PIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  169 bits (428), Expect = 1e-51
 Identities = 83/121 (68%), Positives = 99/121 (81%)

Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           VRLQLWDTAGQERFRSLIPSYIRDS  A+VVYDITN  SF  T+KWI D+  ERG DVII
Sbjct: 29  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 88

Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
            LVGNKTDL D R+V+ EEG +KA+E N MF ETSAKAG+N+K LF+++AA LP +D++ 
Sbjct: 89  ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNSN 148

Query: 350 N 350
           +
Sbjct: 149 S 149

Length = 176

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  163 bits (414), Expect = 2e-49
 Identities = 56/115 (48%), Positives = 77/115 (66%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
            V+ ++WDTAGQER+RSL P Y R +  A+VVYDIT+  SF +   W+ +++     +++
Sbjct: 49  TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIV 108

Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
           I L GNK DL  KRQVSTEE +  A E  ++F+ETSAK G NV +LF  +A  LP
Sbjct: 109 IALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  152 bits (387), Expect = 1e-45
 Identities = 70/221 (31%), Positives = 109/221 (49%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK+V LGE  VGKTSL+ R++ + F+  +++T                    QA+    F
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTT-------------------QAS----F 37

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
             KT+ +  + + L +WDTAGQER+ +L P Y RD+  A++VYDIT+A+SF +       
Sbjct: 38  FQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQK------- 90

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           V+                                  KWI +++  RG+++ +++VGNK D
Sbjct: 91  VK----------------------------------KWIKELKQMRGNNISLVIVGNKID 116

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           L  +R VS  E E  AK +     ETSAK G  ++++ L L
Sbjct: 117 LERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  152 bits (386), Expect = 3e-45
 Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 41/188 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  DSF+ ++ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  SY 
Sbjct: 14  VGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTSYY 73

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDIT+  SF     W+ ++                          HA+   
Sbjct: 74  RGAMGIILVYDITDEKSFENIKNWMRNI------------------------DEHAS--- 106

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          DV  MLVGNK D+ +KR VS EEGE  A+E  + F+ETSAKA  N
Sbjct: 107 --------------EDVERMLVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANIN 152

Query: 227 VKQVRLQL 234
           V++  L L
Sbjct: 153 VEEAFLTL 160

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  147 bits (374), Expect = 2e-43
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK+V +G+  VGK++L++RF  + F+                   DS     ++TIG++F
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFN------------------LDS-----KSTIGVEF 40

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            ++T+ ++ +T++ Q+WDTAGQER+R++  +Y R +  A++VYDIT  ++F    +W+ +
Sbjct: 41  ATRTIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKE 100

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +R                         HA+                 S+++IMLVGNK+D
Sbjct: 101 LRD------------------------HAD-----------------SNIVIMLVGNKSD 119

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           L   R V TEE +  A++  + FIETSA  G NV++   QL
Sbjct: 120 LRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  145 bits (368), Expect = 1e-42
 Identities = 64/184 (34%), Positives = 99/184 (53%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ RF  D+FD    +TIG+DF  KT+ ++ + V+L +WDTAGQERFR+L  SY 
Sbjct: 11  VGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD+T  ++F     W++++ T                 ++           
Sbjct: 71  RGAQGVILVYDVTRRDTFDNLDTWLNELDT-----------------YS----------- 102

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          D + MLVGNK D  + R+V+ EEG++ A++ N++FIETSAK    
Sbjct: 103 ------------TNPDAVKMLVGNKIDKEN-REVTREEGQKFARKHNMLFIETSAKTRIG 149

Query: 227 VKQV 230
           V+Q 
Sbjct: 150 VQQA 153

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  139 bits (353), Expect = 2e-40
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 41/183 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +TV+LQ+WDTAGQERFR++  SY 
Sbjct: 13  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYY 72

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD+T+  SF+   +W+ ++                          +A+   
Sbjct: 73  RGAHGIIIVYDVTDQESFNNVKQWLQEID------------------------RYAS--- 105

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +V  +LVGNK DL+DK+ V   E +  A EL + F+ETSAK   N
Sbjct: 106 --------------ENVNKLLVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATN 151

Query: 227 VKQ 229
           V++
Sbjct: 152 VEE 154

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  136 bits (344), Expect = 4e-39
 Identities = 55/115 (47%), Positives = 79/115 (68%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           KQ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F+  + W++D R    S++
Sbjct: 51  KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNM 110

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            IML+GNK DL  +R+VS EEGE  A+E  ++F+ETSAK   NV++ F   A  +
Sbjct: 111 TIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  135 bits (343), Expect = 5e-39
 Identities = 51/115 (44%), Positives = 78/115 (67%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K++ L +WDTAGQER+ +L P Y RD+  A++VYDIT+A+SF +  KWI +++  RG+++
Sbjct: 47  KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNI 106

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            +++VGNK DL  +R VS  E E  AK +     ETSAK G  +++LF  +A  +
Sbjct: 107 SLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  134 bits (338), Expect = 3e-38
 Identities = 64/189 (33%), Positives = 98/189 (51%), Gaps = 41/189 (21%)

Query: 45  TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
           T VGK+ L+ +F    F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  S
Sbjct: 13  TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRS 72

Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
           Y R +  A++VYDIT                                  F HL       
Sbjct: 73  YYRGAAGALLVYDITR------------------------------RETFNHL------- 95

Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
               + W++D R    S++ IML+GNK DL  +R+VS EEGE  A+E  ++F+ETSAK  
Sbjct: 96  ----TSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTA 151

Query: 225 YNVKQVRLQ 233
            NV++  + 
Sbjct: 152 SNVEEAFIN 160

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  132 bits (333), Expect = 1e-37
 Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 41/187 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
            GK+ L+ +F+ + F      TIG++F S+ + +  ++V+LQ+WDTAGQERFRS+  SY 
Sbjct: 11  TGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSYY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDIT+  SF+  + W+ D RT          + S                 
Sbjct: 71  RGAAGALLVYDITSRESFNALTNWLTDART----------LAS----------------- 103

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          D++I+LVGNK DL D R+V+  E  R A+E  ++F+ETSA  G N
Sbjct: 104 --------------PDIVIILVGNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGEN 149

Query: 227 VKQVRLQ 233
           V++  L+
Sbjct: 150 VEEAFLK 156

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  131 bits (333), Expect = 2e-37
 Identities = 48/111 (43%), Positives = 77/111 (69%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAGQER+R++  +Y R +  A++VYDIT  ++F    +W+ ++R    S++
Sbjct: 50  KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNI 109

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +IMLVGNK+DL   R V TEE +  A++  + FIETSA  G NV++ F+++
Sbjct: 110 VIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  131 bits (332), Expect = 3e-37
 Identities = 66/185 (35%), Positives = 94/185 (50%), Gaps = 38/185 (20%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTSL+ +++   F N Y+ATIG DFL+K + ++DR V LQ+WDTAGQERF+SL  ++ 
Sbjct: 11  VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQERFQSLGVAFY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   V+VYD+TN  SF     W D+                        S     +F 
Sbjct: 71  RGADCCVLVYDVTNPKSFESLDSWRDEF-------------------LIQASPRDPENFP 111

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 225
                              +++GNK DL +KRQVST++ ++  K    + + ETSAK   
Sbjct: 112 ------------------FVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAI 153

Query: 226 NVKQV 230
           NV Q 
Sbjct: 154 NVDQA 158

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  131 bits (331), Expect = 3e-37
 Identities = 64/216 (29%), Positives = 92/216 (42%), Gaps = 64/216 (29%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           KLV LG   VGK++L  RF+   F   Y  TI               +++Y+  I +D  
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTI---------------EDSYRKQIVVD-- 43

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
                    T  L + DTAGQE F ++   YIR+    ++VY IT+  SF +     + +
Sbjct: 44  -------GETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQI 96

Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
              +  +                                        DV I+LVGNK DL
Sbjct: 97  LRVKDKE----------------------------------------DVPIVLVGNKCDL 116

Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            ++RQVSTEEGE  A+E    F+ETSAK   N+ ++
Sbjct: 117 ENERQVSTEEGEALAEEWGCPFLETSAKTNINIDEL 152

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  130 bits (330), Expect = 5e-37
 Identities = 54/112 (48%), Positives = 75/112 (66%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++LQ+WDTAGQERFR++  SY R +   ++VYDIT+  SF     W+ ++      DV
Sbjct: 50  KKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDV 109

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
             MLVGNK D+ +KR VS EEGE  A+E  + F+ETSAKA  NV++ F  +A
Sbjct: 110 ERMLVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLA 161

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  129 bits (326), Expect = 2e-36
 Identities = 56/112 (50%), Positives = 78/112 (69%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFRS+  SY R +  A++VYDIT+  SF+  + W+ D RT    D+
Sbjct: 47  KSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDI 106

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +I+LVGNK DL D R+V+  E  R A+E  ++F+ETSA  G NV++ F + A
Sbjct: 107 VIILVGNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  127 bits (321), Expect = 8e-36
 Identities = 49/113 (43%), Positives = 75/113 (66%), Gaps = 2/113 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT-ERGSD 286
           K+V+L +WDTAGQERFR+L  SY R +   ++VYD+T  ++F     W++++ T     D
Sbjct: 47  KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPD 106

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            + MLVGNK D  + R+V+ EEG++ A++ N++FIETSAK    V+Q F  + 
Sbjct: 107 AVKMLVGNKIDKEN-REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELV 158

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  126 bits (319), Expect = 2e-35
 Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 42/189 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT ++ RF   +F      TIG+DF  KT+ ++ + V+LQ+WDTAGQERFR++  SY 
Sbjct: 14  VGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYY 73

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++ YDIT  +SF     WI++V                          +     
Sbjct: 74  RSANGAIIAYDITRRSSFESVPHWIEEVE------------------------KYG---- 105

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGY 225
                         S+V+++L+GNK DL ++R+V  EE    A+   ++  +ETSAK   
Sbjct: 106 -------------ASNVVLLLIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESS 152

Query: 226 NVKQVRLQL 234
           NV++  L +
Sbjct: 153 NVEEAFLLM 161

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  128 bits (322), Expect = 2e-35
 Identities = 55/115 (47%), Positives = 81/115 (70%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F+  + W++D R    +++
Sbjct: 53  KPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANM 112

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            IML+GNK DL+ +R VSTEEGE+ AKE  ++F+E SAK   NV++ F + AA +
Sbjct: 113 TIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  125 bits (316), Expect = 4e-35
 Identities = 49/115 (42%), Positives = 74/115 (64%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFR++  SY R +   ++VYD+T+  SF+   +W+ ++      +V
Sbjct: 49  KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENV 108

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+DK+ V   E +  A EL + F+ETSAK   NV++ F  +A  +
Sbjct: 109 NKLLVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  126 bits (317), Expect = 4e-35
 Identities = 50/116 (43%), Positives = 76/116 (65%), Gaps = 1/116 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V+LQ+WDTAGQERFR++  SY R +  A++ YDIT  +SF     WI++V     S+V
Sbjct: 50  KRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNV 109

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVKQLFRRVAAAL 342
           +++L+GNK DL ++R+V  EE    A+   ++  +ETSAK   NV++ F  +A  L
Sbjct: 110 VLLLIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  126 bits (319), Expect = 5e-35
 Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 41/185 (22%)

Query: 45  TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
           T VGK+ L+ +F    F   +  TIG++F ++ + ++++ ++LQ+WDTAGQE FRS+  S
Sbjct: 15  TGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74

Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
           Y R +  A++VYDIT   +F+  + W++D R                         HAN 
Sbjct: 75  YYRGAAGALLVYDITRRETFNHLASWLEDAR------------------------QHAN- 109

Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
                           +++ IML+GNK DL+ +R VSTEEGE+ AKE  ++F+E SAK  
Sbjct: 110 ----------------ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTA 153

Query: 225 YNVKQ 229
            NV++
Sbjct: 154 QNVEE 158

Length = 210

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  125 bits (316), Expect = 8e-35
 Identities = 75/214 (35%), Positives = 108/214 (50%), Gaps = 63/214 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK++ +G+  VGKT L+ RF   +F             L   F+         AT+GI F
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAF-------------LAGSFI---------ATVGIQF 38

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            +K + ++   V+LQ+WDTAGQERFRS+  +Y RD+   +++YD+TN +SF       D+
Sbjct: 39  TNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSF-------DN 91

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +R                                   W+ ++     SDV+IML+GNK D
Sbjct: 92  IRA----------------------------------WLTEILEYAQSDVVIMLLGNKAD 117

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
           +S +R V  E+GER AKE  V F+ETSAK G NV
Sbjct: 118 MSGERVVKREDGERLAKEYGVPFMETSAKTGLNV 151

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  124 bits (314), Expect = 2e-34
 Identities = 58/114 (50%), Positives = 79/114 (69%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
           +V+LQ+WDTAGQERFRS+  +Y RD+   +++YD+TN +SF     W+ ++     SDV+
Sbjct: 49  KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVV 108

Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           IML+GNK D+S +R V  E+GER AKE  V F+ETSAK G NV+  F  VA  L
Sbjct: 109 IMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  124 bits (314), Expect = 4e-34
 Identities = 66/182 (36%), Positives = 95/182 (52%), Gaps = 41/182 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSY 105
           VGK+SL+ RF    F      T+G+DF S+ + +E    ++LQLWDTAGQERFRS+  SY
Sbjct: 13  VGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSY 72

Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            R+S   ++V+DITN  SF     W+++ R                   +H+  H     
Sbjct: 73  YRNSVGVLLVFDITNRESFEHVHDWLEEAR-------------------SHIQPHR---- 109

Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                             + +LVG+K DL  +RQV+ EE E+ AK+L + +IETSA+ G 
Sbjct: 110 -----------------PVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGD 152

Query: 226 NV 227
           NV
Sbjct: 153 NV 154

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  123 bits (311), Expect = 7e-34
 Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 40/184 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSY 105
           VGKTS+I R+++  F   Y+ATIG+DF  K +  +  T VRLQLWD AGQERF  +   Y
Sbjct: 11  VGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVY 70

Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            + +  A++V+D+T  ++F    KW  D+                               
Sbjct: 71  YKGAVGAIIVFDVTRPSTFEAVLKWKADL------------------------------- 99

Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELN-VMFIETSAKA 223
              SK    V    G  +  +L+ NK DL  +R     E+ ++  KE   + + ETSAK 
Sbjct: 100 --DSK----VTLPNGEPIPALLLANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKE 153

Query: 224 GYNV 227
             N+
Sbjct: 154 NINI 157

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  120 bits (301), Expect = 6e-33
 Identities = 68/190 (35%), Positives = 99/190 (52%), Gaps = 41/190 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTS + R+  DSF + + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQER+R++  +Y 
Sbjct: 12  VGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAYY 71

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +++YDITN  SF+    W   ++T                     S+ +A    
Sbjct: 72  RGAMGFILMYDITNEESFNAVQDWSTQIKT--------------------YSWDNAQ--- 108

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                             ++LVGNK D+ D+R VS E G + A +L   F E SAK   N
Sbjct: 109 ------------------VILVGNKCDMEDERVVSAERGRQLADQLGFEFFEASAKENIN 150

Query: 227 VKQVRLQLWD 236
           VKQV  +L D
Sbjct: 151 VKQVFERLVD 160

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  118 bits (297), Expect = 3e-32
 Identities = 49/114 (42%), Positives = 75/114 (65%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N ++++LQ+WDTAGQERFR++  SY R +  A++VYDIT  ++++  S W+ D R     
Sbjct: 47  NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP 106

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           + +I L+GNK DL  +R V+ EE ++ A E  ++F+E SAK G NV+  F   A
Sbjct: 107 NTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  119 bits (300), Expect = 4e-32
 Identities = 51/113 (45%), Positives = 77/113 (68%), Gaps = 1/113 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGSD 286
            +++LQLWDTAGQERFRS+  SY R+S   ++V+DITN  SF     W+++ R+  +   
Sbjct: 50  VRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHR 109

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            + +LVG+K DL  +RQV+ EE E+ AK+L + +IETSA+ G NV++ F  + 
Sbjct: 110 PVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLT 162

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  118 bits (296), Expect = 4e-32
 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 41/187 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ +F    F      TIG++F ++ + +  + ++LQ+WDTAGQERFR++  SY 
Sbjct: 13  VGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYY 72

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDIT                                + + HL         
Sbjct: 73  RGAAGALMVYDITR------------------------------RSTYNHL--------- 93

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
             S W+ D R     + +I L+GNK DL  +R V+ EE ++ A E  ++F+E SAK G N
Sbjct: 94  --SSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGEN 151

Query: 227 VKQVRLQ 233
           V+   L+
Sbjct: 152 VEDAFLE 158

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  116 bits (292), Expect = 1e-31
 Identities = 63/188 (33%), Positives = 96/188 (51%), Gaps = 41/188 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT L+ RF    F     ATIG+DF+ KT+ ++   ++LQ+WDTAGQERFRS+  SY 
Sbjct: 18  VGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYY 77

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++ YDIT   SF    +W+ ++                          +AN   
Sbjct: 78  RSANALILTYDITCEESFRCLPEWLREIEQ------------------------YAN--- 110

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         + VI +LVGNK DL+++R+VS +  E  +   ++ ++ETSAK   N
Sbjct: 111 --------------NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDN 156

Query: 227 VKQVRLQL 234
           V+++ L L
Sbjct: 157 VEKLFLDL 164

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  114 bits (287), Expect = 1e-30
 Identities = 61/185 (32%), Positives = 86/185 (46%), Gaps = 41/185 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSY 105
           VGKT L  RF    F    +ATIG+DF  +T+ ++   +++QLWDTAGQERFR S++  Y
Sbjct: 13  VGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHY 72

Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            R+    V VYD+TN  SFH    WI++                           H+   
Sbjct: 73  YRNVHAVVFVYDVTNMASFHSLPSWIEECE------------------------QHS--- 105

Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                          ++V  +LVGNK DL ++ QV T+  +R A   ++   ETSAK   
Sbjct: 106 -------------LPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPS 152

Query: 226 NVKQV 230
               V
Sbjct: 153 ENDHV 157

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  114 bits (287), Expect = 1e-30
 Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 64/219 (29%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R++KLV LG   VGK++L  +F+   F + Y  TI               +++Y+  I I
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI---------------EDSYRKQIEI 45

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           D              L + DTAGQE F ++   Y+R     ++VY IT+  SF + +K  
Sbjct: 46  D---------GEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAK-- 94

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                                            F +       +R +   DV I+LVGNK
Sbjct: 95  ---------------------------------FREQI-----LRVKDRDDVPIVLVGNK 116

Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            DL ++R VSTEEG+  A++    F+ETSAK   NV + 
Sbjct: 117 CDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEA 155

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  113 bits (285), Expect = 2e-30
 Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 1/113 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           +   L + DTAGQE F ++   YIR+    ++VY IT+  SF +     + +   +  + 
Sbjct: 45  ETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKED 104

Query: 288 I-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           + I+LVGNK DL ++RQVSTEEGE  A+E    F+ETSAK   N+ +LF  + 
Sbjct: 105 VPIVLVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLV 157

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  113 bits (285), Expect = 2e-30
 Identities = 64/217 (29%), Positives = 92/217 (42%), Gaps = 64/217 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           +KLV LG   VGK++L  +F+   F + Y  TI               +++Y+  I ID 
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI---------------EDSYRKQIEID- 44

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
                        L + DTAGQE F ++   Y+R     ++VY IT+  SF +  K    
Sbjct: 45  --------GEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKK---- 92

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                          F +    I  +R +   DV I+LVGNK D
Sbjct: 93  -------------------------------FREQ---I--LRVKDRDDVPIVLVGNKCD 116

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           L  +R VSTEEG+  A++    F+ETSAK   NV + 
Sbjct: 117 LESERVVSTEEGKELARQWGCPFLETSAKERVNVDEA 153

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  112 bits (282), Expect = 4e-30
 Identities = 57/186 (30%), Positives = 81/186 (43%), Gaps = 44/186 (23%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPS 104
           VGK+S+I RF+   F   Y+ TIG+DFL K ++L      VRL LWDTAGQE F ++  +
Sbjct: 11  VGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKA 70

Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
           Y R +   ++V+  T+  SF     W + V  E          G I              
Sbjct: 71  YYRGAQACILVFSTTDRESFEAIESWKEKVEAE---------CGDIPM------------ 109

Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
                                +LV  K DL D+  ++ EE E  AK L +    TS K  
Sbjct: 110 ---------------------VLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDD 148

Query: 225 YNVKQV 230
           +NV ++
Sbjct: 149 FNVTEL 154

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  111 bits (280), Expect = 8e-30
 Identities = 47/114 (41%), Positives = 74/114 (64%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
           +++LQ+WDTAGQERFRS+  SY R +   ++ YDIT   SF    +W+ ++     + VI
Sbjct: 55  KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI 114

Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            +LVGNK DL+++R+VS +  E  +   ++ ++ETSAK   NV++LF  +A  L
Sbjct: 115 TILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  112 bits (282), Expect = 1e-29
 Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 42/183 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ RF  ++F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQERFR++  +Y 
Sbjct: 17  VGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYY 76

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+TN  SF    +W+ +                IE N             
Sbjct: 77  RGTHGVIVVYDVTNGESFVNVKRWLQE----------------IEQN------------- 107

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                 DDV          +LVGNK D  +++ V TE+  + A ++ +   ETSAK   N
Sbjct: 108 -----CDDVCK--------VLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN 154

Query: 227 VKQ 229
           V++
Sbjct: 155 VEE 157

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  111 bits (279), Expect = 2e-29
 Identities = 59/230 (25%), Positives = 95/230 (41%), Gaps = 81/230 (35%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           K+V +G+ +VGKT L+  +  + F   Y  T+              FDN Y A + +D  
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV--------------FDN-YSANVTVD-- 44

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQ-TSKWID 132
                   + V L LWDTAGQE +  L P SY   + V ++ + + + +SF    +KW  
Sbjct: 45  -------GKQVNLGLWDTAGQEEYDRLRPLSY-PQTDVFLLCFSVDSPSSFENVKTKWYP 96

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
           +++                        H+                    +V I+LVG K 
Sbjct: 97  EIK------------------------HYC------------------PNVPIILVGTKI 114

Query: 193 DLSD-----------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
           DL D           ++ ++ EEGE+ AKE+  V ++E SA     +K+V
Sbjct: 115 DLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEV 164

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  110 bits (276), Expect = 8e-29
 Identities = 66/191 (34%), Positives = 99/191 (51%), Gaps = 42/191 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTSL+ RF  D+F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQERF S+  +Y 
Sbjct: 11  VGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDIT   +F    KW+                                   
Sbjct: 71  RSAKGIILVYDITKKETFDDLPKWM----------------------------------- 95

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 225
              K ID   +E   D  ++LVGNK D    R+++ ++GE+ A+++  M F E SAK  +
Sbjct: 96  ---KMIDKYASE---DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 149

Query: 226 NVKQVRLQLWD 236
           NV ++ L+L D
Sbjct: 150 NVDEIFLKLVD 160

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  109 bits (273), Expect = 9e-29
 Identities = 49/113 (43%), Positives = 73/113 (64%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N K+++LQ+WDTAGQER+R++  +Y R +   +++YDITN  SF+    W   ++T    
Sbjct: 46  NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 105

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +  ++LVGNK D+ D+R VS E G + A +L   F E SAK   NVKQ+F R+
Sbjct: 106 NAQVILVGNKCDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERL 158

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  108 bits (271), Expect = 2e-28
 Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           +   L + DTAGQE F ++   Y+R     ++VY IT+  SF + +K+ + + R +   D
Sbjct: 48  EVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD 107

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           V I+LVGNK DL ++R VSTEEG+  A++    F+ETSAK   NV + F  +
Sbjct: 108 VPIVLVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDL 159

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  108 bits (272), Expect = 2e-28
 Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           +   L + DTAGQE F ++   Y+R     ++VY IT+  SF +  K+ + + R +   D
Sbjct: 46  EVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDD 105

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           V I+LVGNK DL  +R VSTEEG+  A++    F+ETSAK   NV + F  +
Sbjct: 106 VPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  107 bits (268), Expect = 7e-28
 Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 50/193 (25%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT----------VRLQLWDTAGQE 96
           VGKT+ + R+  + F+  +  T+GIDF  K +    +           V LQLWDTAGQE
Sbjct: 15  VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWDTAGQE 74

Query: 97  RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
           RFRSL  ++ RD+   ++++D+T+  SF     W+  ++                     
Sbjct: 75  RFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQA-------------------- 114

Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
               HA                   +  I+L+GNK DL D+R+VS  +    A +  + +
Sbjct: 115 ----HAYC----------------ENPDIVLIGNKADLPDQREVSERQARELADKYGIPY 154

Query: 217 IETSAKAGYNVKQ 229
            ETSA  G NV++
Sbjct: 155 FETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  108 bits (270), Expect = 9e-28
 Identities = 57/183 (31%), Positives = 102/183 (55%), Gaps = 41/183 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+++++RF  + F    ++TIG++F ++T+ +E +TV+ Q+WDTAGQER+R++  +Y 
Sbjct: 23  VGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYY 82

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDIT   +F    +W+ ++R                         HA+   
Sbjct: 83  RGAVGALLVYDITKRQTFDNVQRWLRELRD------------------------HAD--- 115

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         S+++IM+ GNK+DL+  R V+ E+G+  A++  + F+ETSA    N
Sbjct: 116 --------------SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATN 161

Query: 227 VKQ 229
           V++
Sbjct: 162 VEK 164

Length = 216

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  105 bits (264), Expect = 5e-27
 Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 57/205 (27%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT+L+ R + D F   Y  TIG    +KT+    R ++LQLWDTAGQE +RSL P Y 
Sbjct: 16  VGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYY 75

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD T   S        D++  E                             
Sbjct: 76  RGANGILIVYDSTLRESS-------DELTEE----------------------------- 99

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-------------- 212
               W++++R     DV I+LVGNK DL D++  S E   +  +E+              
Sbjct: 100 ----WLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEV 155

Query: 213 -NVMFIETSAKA--GYNVKQVRLQL 234
            N   +ETSAK+  G NV ++  +L
Sbjct: 156 ANPALLETSAKSLTGPNVNELFKEL 180

Length = 219

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  102 bits (256), Expect = 4e-26
 Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD-V 287
           +V LQLWDTAGQERFRSL  ++ RD+   ++++D+T+  SF     W+  ++     +  
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
            I+L+GNK DL D+R+VS  +    A +  + + ETSA  G NV++
Sbjct: 122 DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  101 bits (252), Expect = 9e-26
 Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 41/188 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT L+ RF  + F +++ +TIG+DF  KT+ ++   VR+Q+WDTAGQER++++   Y 
Sbjct: 11  VGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +    +VYDI++  S+    KW+ DV                                
Sbjct: 71  RRAQGIFLVYDISSERSYQHIMKWVSDV-------------------------------- 98

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                 D+   E    V  +L+GNK D   KRQV  E+G + AKE  + F ETSA    N
Sbjct: 99  ------DEYAPEG---VQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKN 149

Query: 227 VKQVRLQL 234
           +K+   +L
Sbjct: 150 IKESFTRL 157

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  100 bits (251), Expect = 1e-25
 Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 210 KELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
           K + V F+E       + + VRL LWDTAGQE F ++  +Y R +   ++V+  T+  SF
Sbjct: 31  KTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESF 90

Query: 270 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
                W + V  E G D+ ++LV  K DL D+  ++ EE E  AK L +    TS K  +
Sbjct: 91  EAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDF 149

Query: 330 NVKQLFRRVAA 340
           NV +LF  +A 
Sbjct: 150 NVTELFEYLAE 160

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  100 bits (251), Expect = 2e-25
 Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 11/120 (9%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           + V LQ+WDTAGQERF+SL  ++ R +   V+VYD+TN  SF     W D+   +     
Sbjct: 47  RLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRD 106

Query: 287 ------VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA 339
                 V++   GNK DL +KRQVST++ ++  K    + + ETSAK   NV Q F  +A
Sbjct: 107 PENFPFVVL---GNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIA 163

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  101 bits (252), Expect = 2e-25
 Identities = 71/228 (31%), Positives = 99/228 (43%), Gaps = 63/228 (27%)

Query: 2   SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
           SSSG        FK++ +G+  VGK+SL+  F+  S ++                     
Sbjct: 3   SSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDL-------------------- 42

Query: 62  DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
                 TIG+DF  K + +  + ++L +WDTAGQERFR+L  SY R++   ++VYD+T  
Sbjct: 43  ----APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRR 98

Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
            +F               SDV    V    TN                            
Sbjct: 99  ETFTNL------------SDVWGKEVELYSTN---------------------------Q 119

Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
           D + MLVGNK D   +R VS EEG   AKE   +F+E SAK   NV+Q
Sbjct: 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167

Length = 211

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  100 bits (250), Expect = 3e-25
 Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 68/220 (30%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           K+V LG++SVGKTSL+ R+++  F                          YQ TIG  F+
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRF----------------------LVGPYQNTIGAAFV 39

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
           +K M + +R V L +WDTAG ER+ ++   Y R +  A+V YD+T+++SF +   W+ ++
Sbjct: 40  AKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL 99

Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
           +                    H                            I L G K+DL
Sbjct: 100 Q----------------NLEEHCK--------------------------IYLCGTKSDL 117

Query: 195 ----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  RQV   + +  A E+     ETS+K G NV ++
Sbjct: 118 IEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL 157

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  100 bits (251), Expect = 4e-25
 Identities = 44/111 (39%), Positives = 75/111 (67%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+ Q+WDTAGQER+R++  +Y R +  A++VYDIT   +F    +W+ ++R    S++
Sbjct: 59  KTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNI 118

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +IM+ GNK+DL+  R V+ E+G+  A++  + F+ETSA    NV++ F+ +
Sbjct: 119 VIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169

Length = 216

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 99.0 bits (247), Expect = 6e-25
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 5/119 (4%)

Query: 229 QVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSD 286
           ++++QLWDTAGQERFR S++  Y R+    V VYD+TN  SFH    WI++       ++
Sbjct: 50  RIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE 109

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY---NVKQLFRRVAAAL 342
           V  +LVGNK DL ++ QV T+  +R A   ++   ETSAK      +V+ +F  +A  L
Sbjct: 110 VPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 99.9 bits (249), Expect = 9e-25
 Identities = 59/182 (32%), Positives = 81/182 (44%), Gaps = 39/182 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSY 105
            GKTSLI RF  + F  +Y+ TIG+DF S+ + L     V LQ+WD  GQ+    ++  Y
Sbjct: 11  SGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQIGGKMLDKY 70

Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
           I  +    +VYDITN+ SF     W+  V                               
Sbjct: 71  IYGAQAVCLVYDITNSQSFENLEDWLSVV------------------------------- 99

Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                    V  E  +   ++LVGNKTDL   RQV+ E+  R A+E ++  I  SAK G 
Sbjct: 100 -------KKVNEESETKPKMVLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGD 152

Query: 226 NV 227
            V
Sbjct: 153 RV 154

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 98.4 bits (246), Expect = 1e-24
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 16/135 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQ-T 272
           +F   SA    + KQV L LWDTAGQE +  L P SY   + V ++ + + + +SF    
Sbjct: 33  VFDNYSANVTVDGKQVNLGLWDTAGQEEYDRLRPLSY-PQTDVFLLCFSVDSPSSFENVK 91

Query: 273 SKWIDDVRTERGSDVIIMLVGNKTDLSD-----------KRQVSTEEGERKAKELN-VMF 320
           +KW  +++     +V I+LVG K DL D           ++ ++ EEGE+ AKE+  V +
Sbjct: 92  TKWYPEIK-HYCPNVPIILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKY 150

Query: 321 IETSAKAGYNVKQLF 335
           +E SA     +K++F
Sbjct: 151 MECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 98.5 bits (245), Expect = 2e-24
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K++RLQ+WDTAGQERF S+  +Y R +   ++VYDIT   +F    KW+  +      D 
Sbjct: 47  KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 106

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRV 338
            ++LVGNK D    R+++ ++GE+ A+++  M F E SAK  +NV ++F ++
Sbjct: 107 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 60/230 (26%), Positives = 92/230 (40%), Gaps = 82/230 (35%)

Query: 16  LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLS 75
           LV +G+ +VGKT L+  +  ++F   Y  T+              F+N Y A + +D   
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV--------------FEN-YSADVEVD--- 42

Query: 76  KTMYLEDRTVRLQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQ-TSKWIDD 133
                  + V L LWDTAGQE +  L P SY  D+ V ++ + + +  SF     KW  +
Sbjct: 43  ------GKPVELGLWDTAGQEDYDRLRPLSY-PDTDVFLICFSVDSPASFENVKEKWYPE 95

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           V+                        H                     +V I+LVG K D
Sbjct: 96  VK------------------------HFCP------------------NVPIILVGTKLD 113

Query: 194 L----------SDKRQ--VSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
           L          S K+Q  V+ E+G+  AK +  V ++E SA     V++V
Sbjct: 114 LRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREV 163

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 97.6 bits (243), Expect = 4e-24
 Identities = 45/111 (40%), Positives = 73/111 (65%), Gaps = 3/111 (2%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N ++V+LQ+WDTAGQERFR++  +Y R +   +VVYD+TN  SF    +W+ ++  E+  
Sbjct: 51  NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNC 108

Query: 286 DVII-MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           D +  +LVGNK D  +++ V TE+  + A ++ +   ETSAK   NV+++F
Sbjct: 109 DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 96.9 bits (241), Expect = 4e-24
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 42/185 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT LI RF  D FD  Y+ATIG+DF  +   +      LQLWDTAGQERF+ +  +Y 
Sbjct: 11  VGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++V+D+T+  S   T +W++D   E                             
Sbjct: 71  RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-------------------------- 104

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE--RKAKELNVMFIETSAKAG 224
                         S V++ LVG K DLS   Q +  E +  + A+E+   +   SA  G
Sbjct: 105 --------------SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTG 150

Query: 225 YNVKQ 229
            NV+ 
Sbjct: 151 ENVRD 155

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 97.0 bits (241), Expect = 9e-24
 Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRT-ERGS 285
           K+++L +WDTAGQERFR+L  SY R++   ++VYD+T   +F   S  W  +V       
Sbjct: 60  KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           D + MLVGNK D   +R VS EEG   AKE   +F+E SAK   NV+Q F  +A
Sbjct: 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELA 173

Length = 211

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 94.6 bits (236), Expect = 3e-23
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 72/220 (32%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI---GI 71
           K+  LG +SVGK+SL  +F+   F  +Y  TI               +NT+   I   G 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTI---------------ENTFSKIITYKGQ 47

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQTSKW 130
           ++             L++ DTAGQ+ + S++P  Y       ++VY +T+  SF +  K 
Sbjct: 48  EY------------HLEIVDTAGQDEY-SILPQKYSIGIHGYILVYSVTSRKSF-EVVKV 93

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           I D                                    K +D +  E    V I+LVGN
Sbjct: 94  IYD------------------------------------KILDMLGKES---VPIVLVGN 114

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           K+DL  +RQVS EEG++ A+     F+E+SAK   NV++ 
Sbjct: 115 KSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEA 154

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 94.7 bits (236), Expect = 5e-23
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD----VRTER 283
             VRLQLWD AGQERF  +   Y + +  A++V+D+T  ++F    KW  D    V    
Sbjct: 48  TVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPN 107

Query: 284 GSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVA 339
           G  +  +L+ NK DL  +R     E+ ++  KE   + + ETSAK   N+++  R + 
Sbjct: 108 GEPIPALLLANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLV 165

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 93.8 bits (234), Expect = 5e-23
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 17/131 (12%)

Query: 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQ-TSKWID 277
           SA    + K V L LWDTAGQE +  L P SY  D+ V ++ + + +  SF     KW  
Sbjct: 36  SADVEVDGKPVELGLWDTAGQEDYDRLRPLSY-PDTDVFLICFSVDSPASFENVKEKWYP 94

Query: 278 DVRTERGSDVIIMLVGNKTDL----------SDKRQ--VSTEEGERKAKELN-VMFIETS 324
           +V+     +V I+LVG K DL          S K+Q  V+ E+G+  AK +  V ++E S
Sbjct: 95  EVK-HFCPNVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECS 153

Query: 325 AKAGYNVKQLF 335
           A     V+++F
Sbjct: 154 ALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 93.1 bits (231), Expect = 7e-23
 Identities = 46/111 (41%), Positives = 67/111 (60%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
           +VR+Q+WDTAGQER++++   Y R +    +VYDI++  S+    KW+ DV       V 
Sbjct: 48  KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ 107

Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            +L+GNK D   KRQV  E+G + AKE  + F ETSA    N+K+ F R+ 
Sbjct: 108 KILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 93.0 bits (231), Expect = 1e-22
 Identities = 60/182 (32%), Positives = 85/182 (46%), Gaps = 39/182 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT+L  +   + F  TY  TI  D   K + ++ +   L++ DTAGQE + +L   +I
Sbjct: 10  VGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWI 68

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R+    ++VY IT+ ++F          R ER                    F       
Sbjct: 69  REGEGFILVYSITSRSTFE---------RVER--------------------FREQ---- 95

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                I  V+ E  +DV IM+VGNK D   +R+VSTEEG   A+ L   FIE SAK   N
Sbjct: 96  -----IQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN 150

Query: 227 VK 228
           V+
Sbjct: 151 VE 152

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 91.5 bits (227), Expect = 4e-22
 Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 3/112 (2%)

Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIM 290
           LQLWDTAGQERF+ +  +Y R +   ++V+D+T+  S   T +W++D   E   S V++ 
Sbjct: 51  LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF 110

Query: 291 LVGNKTDLSDKRQVSTEEGE--RKAKELNVMFIETSAKAGYNVKQLFRRVAA 340
           LVG K DLS   Q +  E +  + A+E+   +   SA  G NV+  F RVA+
Sbjct: 111 LVGTKKDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVAS 162

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 91.9 bits (228), Expect = 4e-22
 Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 1/112 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           ++V+LQLWDT+GQ RF ++  SY R +   ++VYDITN  SF    +WI ++  E    V
Sbjct: 53  RRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGV 111

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
             +LVGN+  L+ KRQV+TE+ +  A+   + F E S    +N+ + F  +A
Sbjct: 112 PKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 91.3 bits (227), Expect = 4e-22
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 36/184 (19%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ +I R+    F + Y  TIGID+  K + + ++ VR+  +D +G   +  +   + 
Sbjct: 11  VGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           +D+   ++VYD+T+  SF     W+ +++ E G                     H N   
Sbjct: 71  KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGP--------------------HGNM-- 108

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          ++++++  NK DL+  R VS +EG   A+     + ETSA  G  
Sbjct: 109 --------------ENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEG 154

Query: 227 VKQV 230
           V ++
Sbjct: 155 VNEM 158

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 91.5 bits (228), Expect = 5e-22
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 6/126 (4%)

Query: 232 LQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-I 289
           L++ DTAGQ+ + S++P  Y       ++VY +T+  SF       D +    G + + I
Sbjct: 51  LEIVDTAGQDEY-SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI 109

Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
           +LVGNK+DL  +RQVS EEG++ A+     F+E+SAK   NV++ F  +   +  ++  E
Sbjct: 110 VLVGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELL---IEEIEKVE 166

Query: 350 NKPPED 355
           N  P  
Sbjct: 167 NPLPPG 172

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 92.2 bits (229), Expect = 6e-22
 Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 3/121 (2%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW---IDDVRTERGS 285
            V LQ+WD  GQ+    ++  YI  +    +VYDITN+ SF     W   +  V  E  +
Sbjct: 49  NVTLQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESET 108

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
              ++LVGNKTDL   RQV+ E+  R A+E ++  I  SAK G  V   F+R+AA L G+
Sbjct: 109 KPKMVLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGV 168

Query: 346 D 346
            
Sbjct: 169 K 169

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 91.6 bits (228), Expect = 6e-22
 Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 17/124 (13%)

Query: 228 KQVRLQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGS 285
           K + L LWDTAGQE +  L P SY  D  V ++ Y + N  S      KW  +V      
Sbjct: 50  KIIELALWDTAGQEDYDRLRPLSY-PDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCP 107

Query: 286 DVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVK 332
              I+LVG KTDL   +             V+ E+GE  AK +  V +IE SAK   NV 
Sbjct: 108 GTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVD 167

Query: 333 QLFR 336
           ++F 
Sbjct: 168 EVFD 171

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 3/114 (2%)

Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW---IDDVRTERGSDVI 288
           L++ DTAGQE + +L   +IR+    ++VY IT+ ++F +  ++   I  V+ E  +DV 
Sbjct: 49  LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP 108

Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           IM+VGNK D   +R+VSTEEG   A+ L   FIE SAK   NV++ F  +  AL
Sbjct: 109 IMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 90.0 bits (223), Expect = 2e-21
 Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 42/183 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK  ++      S ++ Y   +GID+ + T+ L+ R V+LQLWDT+GQ RF ++  SY 
Sbjct: 17  VGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYS 76

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDITN  SF    +WI                                   
Sbjct: 77  RGAQGIILVYDITNRWSFDGIDRWI----------------------------------- 101

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
              K ID    E    V  +LVGN+  L+ KRQV+TE+ +  A+   + F E S    +N
Sbjct: 102 ---KEID----EHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFN 154

Query: 227 VKQ 229
           + +
Sbjct: 155 ITE 157

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 89.7 bits (223), Expect = 3e-21
 Identities = 61/234 (26%), Positives = 84/234 (35%), Gaps = 81/234 (34%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
            K K+V +G+   GKT L+  +   SF   Y  T+              F+N Y  T+ +
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV--------------FEN-YVTTLQV 46

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQ-TSK 129
                      + + L LWDTAGQE +  L P SY  D  V ++ Y + N  S      K
Sbjct: 47  P--------NGKIIELALWDTAGQEDYDRLRPLSY-PDVDVILICYSVDNPTSLDNVEDK 97

Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
           W  +V                     H                            I+LVG
Sbjct: 98  WYPEV--------------------NHFC----------------------PGTPIVLVG 115

Query: 190 NKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
            KTDL   +             V+ E+GE  AK +  V +IE SAK   NV +V
Sbjct: 116 LKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEV 169

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 89.2 bits (221), Expect = 3e-21
 Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 39/182 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ R++ + FD     TIG++FL+K + ++   V LQ+WDTAGQERFRSL   + 
Sbjct: 16  VGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFY 75

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R S   ++ + + ++ SF   S W                    +  F + +        
Sbjct: 76  RGSDCCLLTFSVDDSQSFQNLSNW--------------------KKEFIYYA-------- 107

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 225
                  DV+       +I  +GNK D+  +RQVSTEE +   ++     + ETSAK   
Sbjct: 108 -------DVKEPESFPFVI--LGNKIDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDAT 157

Query: 226 NV 227
           NV
Sbjct: 158 NV 159

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 88.4 bits (219), Expect = 6e-21
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 44/187 (23%)

Query: 47  VGKTSLITRFMYD--SFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRSLI 102
           VGK++L+  F  D  +F   Y  T G D + KT+ + D   +V L ++D+AGQE F  ++
Sbjct: 11  VGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSAGQELFSDMV 70

Query: 103 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA 162
            +      V  VVYD+TN  SF+  S+WI+ VRT                          
Sbjct: 71  ENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTH------------------------- 105

Query: 163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
                            G     +LVGNK DL+D+R+V   + +  A+   + F ETSAK
Sbjct: 106 ---------------SHGLHTPGVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAK 150

Query: 223 AGYNVKQ 229
            G   + 
Sbjct: 151 EGVGYEA 157

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 87.2 bits (216), Expect = 1e-20
 Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 1/113 (0%)

Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGSDVI 288
           V L ++D+AGQE F  ++ +      V  VVYD+TN  SF+  S+WI+ VRT   G    
Sbjct: 53  VELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTP 112

Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
            +LVGNK DL+D+R+V   + +  A+   + F ETSAK G   +  F  +A A
Sbjct: 113 GVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLARA 165

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 86.6 bits (215), Expect = 2e-20
 Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 71/217 (32%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFM--YDS-FDNTYQATIGI 71
           K+  LG   VGK++L  RF                  L  RF+  Y+   ++ Y      
Sbjct: 1   KIAVLGASGVGKSALTVRF------------------LTKRFIGEYEPNLESLY------ 36

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERF--RSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
              S+ + ++   V L++ DT GQ++      +   +R +   V+VY IT+ +SF     
Sbjct: 37  ---SRQVTIDGEQVSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSF----- 88

Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
                      DV+  L+                   +           R  ++ ++LVG
Sbjct: 89  -----------DVVSQLL------------QLIREIKK-----------RDGEIPVILVG 114

Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
           NK DL   RQVSTEEG++ A EL  +F E SA   Y 
Sbjct: 115 NKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 86.0 bits (213), Expect = 3e-20
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD-VRTERGSDVIIM 290
           L++ DTAG E+F S+   YI++    +VVY + N  +F       D  VR +    V I+
Sbjct: 51  LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110

Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           LVGNK DL  +R+VS+ EG   A+E    F+ETSAK+   V +LF  +
Sbjct: 111 LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 85.7 bits (212), Expect = 4e-20
 Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 64/222 (28%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           ++K+V LG   VGK++L  +F+  +F   Y  TI                         D
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE------------------------D 36

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
           F  K + ++     L++ DTAG E+F S+   YI++    +VVY + N  +F        
Sbjct: 37  FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQ------- 89

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
           D++  R  D I                               VR +    V I+LVGNK 
Sbjct: 90  DIKPMR--DQI-------------------------------VRVKGYEKVPIILVGNKV 116

Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           DL  +R+VS+ EG   A+E    F+ETSAK+   V ++  ++
Sbjct: 117 DLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 85.6 bits (212), Expect = 4e-20
 Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 41/188 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  +FMYD F   Y+ T   D   K + L+   V+L + DTAGQE + ++  +Y 
Sbjct: 11  VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQEDYAAIRDNYF 69

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R     ++V+ IT+  SF   +++ + +                                
Sbjct: 70  RSGEGFLLVFSITDMESFTALAEFREQI-------------------------------- 97

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                   +R +   +V ++LVGNK DL DKRQVS EE    A++  V ++ETSAK   N
Sbjct: 98  --------LRVKEDDNVPLLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRAN 149

Query: 227 VKQVRLQL 234
           V +V   L
Sbjct: 150 VDKVFFDL 157

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 84.8 bits (210), Expect = 1e-19
 Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           +  RL + DTAGQE F ++   Y+R     ++V+ +T+  SF +  K+   + R +   +
Sbjct: 48  QWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDE 107

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
             ++LVGNK DL  +RQVS EEG+  A++L + +IETSAK   NV + F
Sbjct: 108 FPMILVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 83.5 bits (206), Expect = 9e-19
 Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 18/131 (13%)

Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVI 288
           ++LQLWDTAGQE +RSL P Y R +   ++VYD T   S  + T +W++++R     DV 
Sbjct: 54  IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP 113

Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKEL---------------NVMFIETSAKA--GYNV 331
           I+LVGNK DL D++  S E   +  +E+               N   +ETSAK+  G NV
Sbjct: 114 ILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNV 173

Query: 332 KQLFRRVAAAL 342
            +LF+ +   L
Sbjct: 174 NELFKELLRKL 184

Length = 219

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 82.6 bits (204), Expect = 1e-18
 Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + V L +WDTAG ER+ ++   Y R +  A+V YD+T+++SF +   W+ +++       
Sbjct: 48  RVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHC 106

Query: 288 IIMLVGNKTDL----SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            I L G K+DL       RQV   + +  A E+     ETS+K G NV +LF++VA
Sbjct: 107 KIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVA 162

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 80.9 bits (200), Expect = 2e-18
 Identities = 61/218 (27%), Positives = 92/218 (42%), Gaps = 64/218 (29%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
             +KLV +G   VGK++L  +F+   F   Y  TI            DS+  T Q  I  
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI-----------EDSY--TKQCEI-- 45

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
                    + +  RL + DTAGQE F ++   Y+R     ++V+ +T+  SF +  K  
Sbjct: 46  ---------DGQWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDK-- 94

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                                            FH        +R +   +  ++LVGNK
Sbjct: 95  ---------------------------------FHTQI-----LRVKDRDEFPMILVGNK 116

Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
            DL  +RQVS EEG+  A++L + +IETSAK   NV +
Sbjct: 117 ADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDK 154

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 79.8 bits (197), Expect = 5e-18
 Identities = 42/108 (38%), Positives = 68/108 (62%), Gaps = 1/108 (0%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDV 287
           +V+L + DTAGQE + ++  +Y R     ++V+ IT+  SF   +++ + + R +   +V
Sbjct: 47  EVQLNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNV 106

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
            ++LVGNK DL DKRQVS EE    A++  V ++ETSAK   NV ++F
Sbjct: 107 PLLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 80.3 bits (198), Expect = 7e-18
 Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 64/217 (29%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           ++KLV +G   VGK++L  +F+ + F + Y  TI               +++Y+    ID
Sbjct: 5   EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI---------------EDSYRKQCVID 49

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
                    + T  L + DTAGQE + ++   Y+R     + VY IT+ +SF +      
Sbjct: 50  ---------EETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEI----- 95

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
                                          SF +       +R +    V ++LVGNK 
Sbjct: 96  ------------------------------ASFREQI-----LRVKDKDRVPMILVGNKC 120

Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 229
           DL  +RQVST EG+  AK   + F+ETSAK   NV +
Sbjct: 121 DLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDE 157

Length = 189

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 5/116 (4%)

Query: 228 KQVRLQLWDTAGQERF--RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR--TER 283
           +QV L++ DT GQ++      +   +R +   V+VY IT+ +SF   S+ +  +R   +R
Sbjct: 45  EQVSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKR 104

Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN-VKQLFRRV 338
             ++ ++LVGNK DL   RQVSTEEG++ A EL  +F E SA   Y  V+ +F  +
Sbjct: 105 DGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHEL 160

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 1/105 (0%)

Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + VY IT+ +SF + + + + + R +    V ++
Sbjct: 55  LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI 114

Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL  +RQVST EG+  AK   + F+ETSAK   NV + F
Sbjct: 115 LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAF 159

Length = 189

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 79.0 bits (195), Expect = 2e-17
 Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 60/226 (26%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           K V +G+ +VGKTSLI  +  + +   Y  T              +FDN +   + +D  
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT--------------AFDN-FSVVVLVD-- 44

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDD 133
                   + VRLQL DTAGQ+ F  L P    D+ V ++ + + N +SF   + KWI +
Sbjct: 45  -------GKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPE 97

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +R        I+LVG+                 Q      D+RT+   +V+I L      
Sbjct: 98  IRK-HNPKAPIILVGT-----------------QA-----DLRTD--VNVLIQLARYGE- 131

Query: 194 LSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQVRLQLWDTA 238
               + VS    +  A+++    +IE SA    N+K+V    +DTA
Sbjct: 132 ----KPVSQSRAKALAEKIGACEYIECSALTQKNLKEV----FDTA 169

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 77.9 bits (192), Expect = 2e-17
 Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           +Q  L++ DTAG E+F ++   Y+++    V+VY IT  ++F+      + + R +   D
Sbjct: 47  QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTED 106

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           V ++LVGNK DL D+R V  E+G+  A++    F+ETSAKA  NV ++F
Sbjct: 107 VPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIF 155

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 77.8 bits (192), Expect = 3e-17
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I +  SF     + + + R +   DV ++
Sbjct: 51  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110

Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R VST +G+  AK   + +IETSAK    V++ F
Sbjct: 111 LVGNKCDLAA-RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 77.2 bits (190), Expect = 4e-17
 Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 64/218 (29%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           ++KLV LG   VGK++L  +F+   F   Y  TI               +++Y+      
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI---------------EDSYR------ 39

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
              K + ++ +   L++ DTAG E+F ++   Y+++    V+VY IT  ++F+     + 
Sbjct: 40  ---KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFND----LQ 92

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
           D+R +                                     +R +   DV ++LVGNK 
Sbjct: 93  DLREQI------------------------------------LRVKDTEDVPMILVGNKC 116

Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           DL D+R V  E+G+  A++    F+ETSAKA  NV ++
Sbjct: 117 DLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEI 154

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 77.5 bits (191), Expect = 4e-17
 Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 65/215 (30%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           ++KLV +G   VGK++L  + + + F + Y  TI               +++Y+  + ID
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVVID 45

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
                      T  L + DTAGQE + ++   Y+R     + V+ I +  SF       +
Sbjct: 46  ---------GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSF-------E 89

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
           D+ T                            + +  K + D       DV ++LVGNK 
Sbjct: 90  DIHT----------------------------YREQIKRVKDS-----DDVPMVLVGNKC 116

Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
           DL+  R VST +G+  AK   + +IETSAK    V
Sbjct: 117 DLAA-RTVSTRQGQDLAKSYGIPYIETSAKTRQGV 150

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 76.8 bits (189), Expect = 5e-17
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF+ D ++    +T  +         E +T+ +  WDTAGQERF+++  SY 
Sbjct: 11  VGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIET--NFTHLSFHHANS 164
             +   ++V+D+T   ++   SKW +++R  R     I++   I+   + T   F+ A  
Sbjct: 71  HKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEK 130

Query: 165 F 165
            
Sbjct: 131 H 131

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 78.2 bits (193), Expect = 7e-17
 Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 73/228 (32%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           +++V LG+  VGK+SL   F    +++  Y+A               S D+TY+ T+ +D
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEA---------------SGDDTYERTVSVD 45

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
                   E+ T  L ++D   QE    L  S ++     V+VY +T+ +SF        
Sbjct: 46  -------GEEAT--LVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSF-------- 88

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
               E+ S++ I L                             R  +  D+ I+LVGNK+
Sbjct: 89  ----EKASELRIQLR----------------------------RARQAEDIPIILVGNKS 116

Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN--------VKQVRL 232
           DL   R+VS +EG   A   +  FIETSA   +N        V+QVRL
Sbjct: 117 DLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRL 164

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 77.8 bits (192), Expect = 8e-17
 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)

Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-DVIIM 290
           L ++D   QE    L  S ++     V+VY +T+ +SF + S+    +R  R + D+ I+
Sbjct: 51  LVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPII 110

Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 336
           LVGNK+DL   R+VS +EG   A   +  FIETSA   +NV +LF 
Sbjct: 111 LVGNKSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFE 156

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 76.8 bits (189), Expect = 8e-17
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 64/219 (29%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R++K+V LG   VGK+++  +F+  SF + +  TI               ++ Y+    I
Sbjct: 1   REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI---------------EDAYKTQARI 45

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           D         +    L + DTAGQ  F ++   Y+R     ++ Y +T+ +SF + S++ 
Sbjct: 46  D---------NEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEF- 95

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                                                 + I  VR     D+ ++LVGNK
Sbjct: 96  -------------------------------------KELITRVR--LTEDIPLVLVGNK 116

Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            DL  +RQV+TEEG   A+E N  F ETSA   + +   
Sbjct: 117 VDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDA 155

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 76.1 bits (187), Expect = 1e-16
 Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 2/110 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           +Q  L++ DTAG E+F ++   YI++     +VY IT   SF+      + + R +   D
Sbjct: 47  QQCMLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTED 106

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLF 335
           V ++LVGNK DL D+R VS EEG+  A++  N  F+ETSAK+  NV ++F
Sbjct: 107 VPMILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 54/197 (27%)

Query: 47  VGKTSLITRFMYDSF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----- 98
           VGK+SL+   +        +    T   D       L+   V+L L DT G + F     
Sbjct: 8   VGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLDEFGGLGR 65

Query: 99  RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLS 158
             L    +R + + ++V D T+  S        +D +                       
Sbjct: 66  EELARLLLRGADLILLVVDSTDRESE-------EDAKLLI-------------------- 98

Query: 159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK-AKELNVMFI 217
                           +R  R   + I+LVGNK DL ++R+V       + AK L V   
Sbjct: 99  ----------------LRRLRKEGIPIILVGNKIDLLEEREVEELLRLEELAKILGVPVF 142

Query: 218 ETSAKAGYNVKQVRLQL 234
           E SAK G  V ++  +L
Sbjct: 143 EVSAKTGEGVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 5/113 (4%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-- 285
           K+VR+  +D +G   +  +   + +D+   ++VYD+T+  SF     W+ +++ E G   
Sbjct: 47  KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHG 106

Query: 286 ---DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
              ++++++  NK DL+  R VS +EG   A+     + ETSA  G  V ++F
Sbjct: 107 NMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 1/106 (0%)

Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQ  F ++   Y+R     ++ Y +T+ +SF + S++ + + R     D+ ++
Sbjct: 52  LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLV 111

Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 336
           LVGNK DL  +RQV+TEEG   A+E N  F ETSA   + +   F 
Sbjct: 112 LVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFH 157

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 74.4 bits (183), Expect = 4e-16
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 218 ETSAKAGYNVKQVRLQLWDTAGQERF-----RSLIPSYIRDSTVAVVVYDITNANSFHQT 272
                   +  +V+L L DT G + F       L    +R + + ++V D T+  S    
Sbjct: 35  PDVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDA 94

Query: 273 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK-AKELNVMFIETSAKAGYNV 331
              I   R  R   + I+LVGNK DL ++R+V       + AK L V   E SAK G  V
Sbjct: 95  KLLIL--RRLRKEGIPIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGV 152

Query: 332 KQLFRRVA 339
            +LF ++ 
Sbjct: 153 DELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 74.9 bits (184), Expect = 4e-16
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 3/108 (2%)

Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD---VI 288
           LQ+ DT G  +F ++    I      ++VY IT+  S  +     + +   +G++   + 
Sbjct: 51  LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIP 110

Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 336
           IMLVGNK D S  R+VS+ EG   A+  N  F+ETSAK  +NV++LF+
Sbjct: 111 IMLVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQ 158

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 74.5 bits (183), Expect = 5e-16
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 42/185 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  +F+   F + Y  TI  D   K + ++ +   L++ DTAG E+F ++   YI
Sbjct: 12  VGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTEQFTAMRDLYI 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           ++     +VY IT   SF+      + +                                
Sbjct: 71  KNGQGFALVYSITAQQSFNDLQDLREQI-------------------------------- 98

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGY 225
                   +R +   DV ++LVGNK DL D+R VS EEG+  A++  N  F+ETSAK+  
Sbjct: 99  --------LRVKDTEDVPMILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKI 150

Query: 226 NVKQV 230
           NV ++
Sbjct: 151 NVDEI 155

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 62/217 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           +++V  G   VGK+SL+ RF+  +F  +Y  TI               ++TY+  I    
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI---------------EDTYRQVISCS- 45

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
                        LQ+ DT G  +F ++    I      ++VY IT+  S  +     + 
Sbjct: 46  --------KSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYEL 97

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +   +G+++                                        + IMLVGNK D
Sbjct: 98  ICEIKGNNL--------------------------------------EKIPIMLVGNKCD 119

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            S  R+VS+ EG   A+  N  F+ETSAK  +NV+++
Sbjct: 120 ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQEL 156

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 71.7 bits (176), Expect = 6e-15
 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 15/122 (12%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 47  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 105

Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A+++    ++E SAK    V++
Sbjct: 106 VPIILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVRE 165

Query: 334 LF 335
           +F
Sbjct: 166 VF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 72.6 bits (178), Expect = 6e-15
 Identities = 52/199 (26%), Positives = 82/199 (41%), Gaps = 43/199 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSY 105
           VGKTSL+ R+M   F +T  +T+G  F     YL+      + +WDTAG+E+F  L   Y
Sbjct: 11  VGKTSLLHRYMERRFKDT-VSTVGGAF-----YLKQWGPYNISIWDTAGREQFHGLGSMY 64

Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            R +   ++ YD++N  S  +       +      D +  +VG+                
Sbjct: 65  CRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL-------------- 110

Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN------------ 213
                   D+  E          G++    D+RQV+ E+ +   K +N            
Sbjct: 111 --------DLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPA 162

Query: 214 --VMFIETSAKAGYNVKQV 230
              M  ETSAK GYNV ++
Sbjct: 163 AEKMCFETSAKTGYNVDEL 181

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 70.7 bits (173), Expect = 1e-14
 Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 10/113 (8%)

Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------IDDVRTER 283
           V LQ+WDTAGQERFRSL   + R S   ++ + + ++ SF   S W        DV+   
Sbjct: 54  VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 113

Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 335
               +I  +GNK D+  +RQVSTEE +   ++     + ETSAK   NV   F
Sbjct: 114 SFPFVI--LGNKIDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 69.4 bits (170), Expect = 1e-14
 Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
            GK+SL+++ +   F        G      T+ ++  T  L +WD  G+E  +     ++
Sbjct: 10  SGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREELKFEHIIFM 69

Query: 107 RDSTVAVVVYDITNANSFHQTS---KWIDDVRTERGSDVIIMLVGS 149
           + +   ++VYD+T+  S ++ S    W+ ++R + G  + ++LVG+
Sbjct: 70  KWADAILLVYDLTDRESLNEVSRLIAWLPNLR-KLGGKIPVILVGN 114

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 65/218 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           +K+V LG   VGK++L  +F+ + F  +Y  TI               +++Y+  + ID 
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI---------------EDSYRKQVEID- 45

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
                    R   L++ DTAG E+F ++   YI+     ++VY +T+  S ++  +  + 
Sbjct: 46  --------GRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQ 97

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           V                                        +R +   +V ++LVGNK D
Sbjct: 98  V----------------------------------------LRIKDSDNVPMVLVGNKAD 117

Query: 194 LSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
           L D RQVS E+G   +++   V F ETSA+   NV +V
Sbjct: 118 LEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEV 155

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 69.1 bits (169), Expect = 3e-14
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K + +  WDTAGQERF+++  SY   +   ++V+D+T   ++   SKW +++R  R  ++
Sbjct: 47  KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEI 105

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 336
             ++V NK DL       T++    A++ N+     SA  G NV +LF+
Sbjct: 106 PCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQ 151

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 69.8 bits (171), Expect = 3e-14
 Identities = 60/232 (25%), Positives = 91/232 (39%), Gaps = 79/232 (34%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           RK KLV +G+ + GKT L+  F  D F   Y  T+              F+N Y A I +
Sbjct: 1   RK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YVADIEV 44

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           D          + V L LWDTAGQE +  L P    D+ V ++ + I + +S        
Sbjct: 45  D---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL------- 88

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
           +++                                   KW  +V+     +V I+LVGNK
Sbjct: 89  ENIP---------------------------------EKWTPEVK-HFCPNVPIILVGNK 114

Query: 192 TDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
            DL +            +  V  EEG   A+++    ++E SAK    V++V
Sbjct: 115 KDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREV 166

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 69.5 bits (170), Expect = 5e-14
 Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 73/244 (29%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           +LVF+G   VGKT+LI RF+YD+F+  ++ T+                         +  
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE------------------------ELH 36

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
           SK   +    V + + DT+G   F ++    I++     +VY + +  SF       ++V
Sbjct: 37  SKEYEVAGVKVTIDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESF-------EEV 89

Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
           +  R  + I+                                 +    V I++VGNK D 
Sbjct: 90  KRLR--EEIL-------------------------------EVKEDKFVPIVVVGNKIDS 116

Query: 195 SDKRQVSTEEGERKAK-ELNVMFIETSAKAGYNV--------KQVRLQLWDTAGQERFRS 245
             +RQV   +     + + N  F+E SAK   NV        +Q  L  W +    R R 
Sbjct: 117 LAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSPALRRRRE 176

Query: 246 LIPS 249
             PS
Sbjct: 177 SAPS 180

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 68.6 bits (168), Expect = 7e-14
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 15/130 (11%)

Query: 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDD 278
           S     + K VRLQL DTAGQ+ F  L P    D+ V ++ + + N +SF   + KWI +
Sbjct: 38  SVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPE 97

Query: 279 VRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSA 325
           +R        I+LVG + DL              ++ VS    +  A+++    +IE SA
Sbjct: 98  IRK-HNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSA 156

Query: 326 KAGYNVKQLF 335
               N+K++F
Sbjct: 157 LTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 56/186 (30%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT+ + R +   F+  Y  T+G++      Y     +   +WDTAGQE+F  L   Y 
Sbjct: 20  VGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYY 79

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
                A++++D+T+  ++     W  D+                                
Sbjct: 80  IKGQCAIIMFDVTSRITYKNVPNWHRDI-------------------------------- 107

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL------NVMFIETS 220
                          ++ I+LVGNK D+ D RQV       KA+++      N+ + + S
Sbjct: 108 ----------VRVCENIPIVLVGNKVDVKD-RQV-------KARQITFHRKKNLQYYDIS 149

Query: 221 AKAGYN 226
           AK+ YN
Sbjct: 150 AKSNYN 155

Length = 215

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA-NSFHQT-SKWIDDVRTE 282
            + K  +  L DTAGQE + ++   Y R    ++ V+DI        +   K   ++   
Sbjct: 46  EDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHH 105

Query: 283 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
             S V I+LVGNK DL D  ++ T      AK      I  SA+ G N+   F
Sbjct: 106 AESGVPIILVGNKIDLRD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 38/158 (24%)

Query: 216 FIETSAKAG--YNVKQVR---LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
           F +T +  G  + +KQ     + +WDTAG+E+F  L   Y R +   ++ YD++N  S  
Sbjct: 25  FKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLE 84

Query: 271 QTSKWIDDVRTERGSDVIIMLVGNKTDLS-------------------DKRQVSTEEGER 311
           +       +      D +  +VGNK DL+                   D+RQV+ E+ + 
Sbjct: 85  ELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKA 144

Query: 312 KAKELN--------------VMFIETSAKAGYNVKQLF 335
             K +N               M  ETSAK GYNV +LF
Sbjct: 145 FYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 67.1 bits (164), Expect = 2e-13
 Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%)

Query: 217 IETSAKAGYNV--KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
           IE S +    +  +Q  L++ DTAG E+F ++   YI+     ++VY +T+  S ++  +
Sbjct: 34  IEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGE 93

Query: 275 WIDDV-RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVK 332
             + V R +   +V ++LVGNK DL D RQVS E+G   +++   V F ETSA+   NV 
Sbjct: 94  LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD 153

Query: 333 QLF 335
           ++F
Sbjct: 154 EVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 24/89 (26%), Positives = 50/89 (56%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           +GKTSL+ +++   FD  Y  T+G++F+ KT+ +    +   +WD  GQ  F +++P   
Sbjct: 11  IGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVC 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVR 135
           +D+   + ++D+T  ++ +   +W    R
Sbjct: 71  KDAVAILFMFDLTRKSTLNSIKEWYRQAR 99

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 15/130 (11%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N  ++R  +WDTAGQE+F  L   Y      A++++D+T+  ++     W  D+      
Sbjct: 45  NRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE- 103

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVA 339
           ++ I+L GNK D+ D++         K K++      N+ + E SAK+ YN ++ F  +A
Sbjct: 104 NIPIVLCGNKVDIKDRK--------VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155

Query: 340 AALPGMDSTE 349
             L G  + E
Sbjct: 156 RKLLGNPNLE 165

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 66.4 bits (162), Expect = 4e-13
 Identities = 55/229 (24%), Positives = 87/229 (37%), Gaps = 78/229 (34%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +D  
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD-- 45

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
                   + V L LWDTAGQE +  L P     + V ++ + + +  SF       ++V
Sbjct: 46  -------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF-------ENV 91

Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
           R +   +V                 HH                    +  I+LVG K DL
Sbjct: 92  RAKWYPEV----------------RHHC------------------PNTPIILVGTKLDL 117

Query: 195 SDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
            D +             ++  +G   AKE+  V ++E SA     +K V
Sbjct: 118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 166

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 65.9 bits (161), Expect = 5e-13
 Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 41/182 (22%)

Query: 47  VGKTSLITRFMYDSFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
           VGK++L+ R + +    T Y+     ++++  +  + +T +  L DTAGQE + ++   Y
Sbjct: 12  VGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLY 71

Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            R    ++ V+DI                           LV  +E              
Sbjct: 72  YRAVESSLRVFDIVI-------------------------LVLDVEEILE---------- 96

Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
               K   ++     S V I+LVGNK DL D  ++ T      AK      I  SA+ G 
Sbjct: 97  ----KQTKEIIHHAESGVPIILVGNKIDLRD-AKLKTHVAFLFAKLNGEPIIPLSAETGK 151

Query: 226 NV 227
           N+
Sbjct: 152 NI 153

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 23/142 (16%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N  ++R   WDTAGQE+F  L   Y      A++++D+T   ++     W  D+   R  
Sbjct: 58  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVC 115

Query: 286 DVI-IMLVGNKTDLSDKRQVSTEEGERKAKEL------NVMFIETSAKAGYNVKQLF--- 335
           + I I+L GNK D+ + RQV       KAK++      N+ + E SAK+ YN ++ F   
Sbjct: 116 ENIPIVLCGNKVDVKN-RQV-------KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167

Query: 336 -RRVA--AALPGMDSTENKPPE 354
            R++A    L  ++S    PPE
Sbjct: 168 ARKLAGDPNLHFVESPALAPPE 189

Length = 219

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 64.6 bits (157), Expect = 3e-12
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N   +R  +WDTAGQE+F  L   Y      A++++D+T   ++     W  D+      
Sbjct: 40  NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVCE 98

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
           ++ I+L GNK D+ D R+V  +      K+ N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 99  NIPIVLCGNKVDVKD-RKVKAKSITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIG 155

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 64.1 bits (156), Expect = 3e-12
 Identities = 45/126 (35%), Positives = 61/126 (48%), Gaps = 17/126 (13%)

Query: 228 KQVRLQLWDTAGQERF---RSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTER 283
             V L LWDTAGQE F   RSL  SY  D+ V ++ + + N +S     SKW+ ++R   
Sbjct: 46  LAVELSLWDTAGQEEFDRLRSL--SY-ADTHVIMLCFSVDNPDSLENVESKWLAEIR-HH 101

Query: 284 GSDVIIMLVGNKTDLSDKRQV--------STEEGERKAKELN-VMFIETSAKAGYNVKQL 334
              V ++LV  K DL + R          S EEG   AK +N   ++E SAK    V + 
Sbjct: 102 CPGVKLVLVALKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEA 161

Query: 335 FRRVAA 340
           F   A 
Sbjct: 162 FTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 64.1 bits (156), Expect = 4e-12
 Identities = 55/227 (24%), Positives = 86/227 (37%), Gaps = 76/227 (33%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           KLV +G+ + GKTSL+  F    F   Y  T+              F+N Y     +D  
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV--------------FEN-YVTDCRVD-- 45

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
                   + V+L LWDTAGQE +  L P     + V ++ + I   +S       +++V
Sbjct: 46  -------GKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDS-------LENV 91

Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
           RT                                 KWI++VR     +V ++LVG K DL
Sbjct: 92  RT---------------------------------KWIEEVRRYCP-NVPVILVGLKKDL 117

Query: 195 SDK----------RQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
             +            V  ++ +  A+ +    ++E SA  G  V  V
Sbjct: 118 RQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDV 164

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 15/125 (12%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N   +   +WDTAGQE+F  L   Y      A++++D+T+  ++     W  D+      
Sbjct: 54  NCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDI-VRVCE 112

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVA 339
           ++ I+LVGNK D+ D RQV       KA+++      N+ + + SAK+ YN ++ F  +A
Sbjct: 113 NIPIVLVGNKVDVKD-RQV-------KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLA 164

Query: 340 AALPG 344
             L  
Sbjct: 165 RRLTN 169

Length = 215

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 60/214 (28%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           + K+V +G+   GKT+L+  F  DSF   Y  T+              F+N Y A+  +D
Sbjct: 1   RCKIVLVGDSQCGKTALLQVFAKDSFPENYVPTV--------------FEN-YTASFEVD 45

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
                     + + L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 46  ---------KQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 96

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
            +VR E   +  ++LVG                         D+RT+         +   
Sbjct: 97  GEVR-EFCPNTPVLLVGCKS----------------------DLRTD---------LSTL 124

Query: 192 TDLSDKRQ--VSTEEGERKAKELN-VMFIETSAK 222
           T+LS+KRQ  VS E+G   AK++    ++E SAK
Sbjct: 125 TELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAK 158

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 63.3 bits (154), Expect = 8e-12
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 13/120 (10%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           K V+L LWDTAGQE +  L P     + V ++ + I   +S     +KWI++VR     +
Sbjct: 47  KPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-N 105

Query: 287 VIIMLVGNKTDLSDK----------RQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 335
           V ++LVG K DL  +            V  ++ +  A+ +    ++E SA  G  V  +F
Sbjct: 106 VPVILVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 15/135 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS- 273
           +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF     
Sbjct: 34  VFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRA 93

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMF 320
           KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  V +
Sbjct: 94  KWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 152

Query: 321 IETSAKAGYNVKQLF 335
           +E SA     +K +F
Sbjct: 153 LECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 13/128 (10%)

Query: 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDD 278
           SA    +   V L LWDTAGQE +  L P   R + V ++ + + +  S+     KWI +
Sbjct: 39  SANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPE 98

Query: 279 VRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAKA 327
           +R      V I+LVG K DL D +Q          ++T +GE   K++    +IE S+K 
Sbjct: 99  LR-HYAPGVPIVLVGTKLDLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKT 157

Query: 328 GYNVKQLF 335
             NVK +F
Sbjct: 158 QQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 60/233 (25%), Positives = 88/233 (37%), Gaps = 82/233 (35%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           K+V LG+ + GKTSL+  F    F   Y+ T+              F+N           
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV--------------FEN----------Y 37

Query: 75  SKTMYLEDRTVRLQLWDTAGQERF---RSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
              ++++   V L LWDTAGQE F   RSL  SY  D+ V ++ + + N +S     SKW
Sbjct: 38  IHDIFVDGLAVELSLWDTAGQEEFDRLRSL--SY-ADTHVIMLCFSVDNPDSLENVESKW 94

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           + ++R                        HH                     V ++LV  
Sbjct: 95  LAEIR------------------------HHCPG------------------VKLVLVAL 112

Query: 191 KTDLSDKRQV--------STEEGERKAKELN-VMFIETSAKAGYNVKQVRLQL 234
           K DL + R          S EEG   AK +N   ++E SAK    V +   + 
Sbjct: 113 KCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEA 165

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 61.2 bits (148), Expect = 5e-11
 Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 44/187 (23%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE+F  L   Y  
Sbjct: 7   GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66

Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ 167
               A++++D+T   ++     W  D            LV   E                
Sbjct: 67  QGQCAIIMFDVTARVTYKNVPNWHRD------------LVRVCE---------------- 98

Query: 168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
                         ++ I+L GNK D+ D R+V  +      K+ N+ + + SAK+ YN 
Sbjct: 99  --------------NIPIVLCGNKVDVKD-RKVKAKSITFHRKK-NLQYYDISAKSNYNF 142

Query: 228 KQVRLQL 234
           ++  L L
Sbjct: 143 EKPFLWL 149

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 45/187 (24%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSY 105
           VGKTSL  + + + FD    +T GI+     +   +R  +RL +WD  GQE + +    +
Sbjct: 12  VGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQEIYHATHQFF 71

Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
           +   ++ ++V+D+   +   +   W+                                +F
Sbjct: 72  LTSRSLYLLVFDLRTGDEVSRVPYWL----------------------------RQIKAF 103

Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI-ETSAKAG 224
                         G    ++LVG   D S    +  ++   K     +  I   S K G
Sbjct: 104 --------------GGVSPVILVGTHIDESCDEDI-LKKALNKKFPAIINDIHFVSCKNG 148

Query: 225 YNVKQVR 231
             + +++
Sbjct: 149 KGIAELK 155

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 60.6 bits (147), Expect = 7e-11
 Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDV 287
           +V + + DT+G   F ++    I++     +VY + +  SF +  +  +++   +    V
Sbjct: 46  KVTIDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFV 105

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAK-ELNVMFIETSAKAGYNVKQLFR 336
            I++VGNK D   +RQV   +     + + N  F+E SAK   NV ++F+
Sbjct: 106 PIVVVGNKIDSLAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFK 155

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 56/189 (29%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
            GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE+F  L   Y 
Sbjct: 11  TGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
                A++++D+T+  ++     W  D+                                
Sbjct: 71  IQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--------------------------- 103

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL------NVMFIETS 220
                          ++ I+L GNK D+ D++         K K++      N+ + E S
Sbjct: 104 ---------------NIPIVLCGNKVDIKDRK--------VKPKQITFHRKKNLQYYEIS 140

Query: 221 AKAGYNVKQ 229
           AK+ YN ++
Sbjct: 141 AKSNYNFEK 149

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 61.3 bits (149), Expect = 8e-11
 Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 38/232 (16%)

Query: 44  ATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 103
           A+ VGKT++++RF+   F+  Y  TI  DF  K   +     +L + DT+G   F ++  
Sbjct: 8   ASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRR 66

Query: 104 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN 163
             I    V ++V+ + N  SF +  +  + +                             
Sbjct: 67  LSILTGDVFILVFSLDNRESFEEVCRLREQIL---------------------------- 98

Query: 164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER-KAKELNVMFIETSAK 222
                +K     +T+    + +++ GNK D    R+V  +E E+    + N  + E SAK
Sbjct: 99  ----ETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAK 154

Query: 223 AGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 274
              N+ ++   L+  A      S  PS  R   ++V   D  +  S   + K
Sbjct: 155 KNSNLDEMFRALFSLAKLPNEMS--PSLHRK--ISVQYGDALHKKSRGGSRK 202

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 56/186 (30%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
            GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE+F  L   Y 
Sbjct: 24  TGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY 83

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
                A++++D+T   ++     W  D+   R  +                         
Sbjct: 84  IHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCE------------------------- 116

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL------NVMFIETS 220
                          ++ I+L GNK D+ + RQV       KAK++      N+ + E S
Sbjct: 117 ---------------NIPIVLCGNKVDVKN-RQV-------KAKQVTFHRKKNLQYYEIS 153

Query: 221 AKAGYN 226
           AK+ YN
Sbjct: 154 AKSNYN 159

Length = 219

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 53/195 (27%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE +  L P   
Sbjct: 12  VGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSY 70

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R + V ++ + + +  S+    K                                     
Sbjct: 71  RGADVFLLAFSLISKASYENVLK------------------------------------- 93

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-M 215
              KWI ++R      V I+LVG K DL D +Q          ++T +GE   K++    
Sbjct: 94  ---KWIPELR-HYAPGVPIVLVGTKLDLRDDKQFFADHPGAVPITTAQGEELRKQIGAAA 149

Query: 216 FIETSAKAGYNVKQV 230
           +IE S+K   NVK V
Sbjct: 150 YIECSSKTQQNVKAV 164

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 32/143 (22%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A   
Sbjct: 1   MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV--------------FDN-YSAQTA 45

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQE---RFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           +D          RTV L LWDTAGQE   R R+L  SY + + V ++ + I + +S+   
Sbjct: 46  VD---------GRTVSLNLWDTAGQEEYDRLRTL--SYPQ-TNVFIICFSIASPSSYENV 93

Query: 128 S-KWIDDVRTERGSDVIIMLVGS 149
             KW  +V      +V I+LVG+
Sbjct: 94  RHKWHPEV-CHHCPNVPILLVGT 115

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K++RL +WD  GQE + +    ++   ++ ++V+D+   +   +   W+  ++   G   
Sbjct: 49  KKIRLNVWDFGGQEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKA-FGGVS 107

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI-ETSAKAGYNVKQLFRRVA 339
            ++LVG   D S    +  ++   K     +  I   S K G  + +L + +A
Sbjct: 108 PVILVGTHIDESCDEDI-LKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIA 159

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 224 GYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
           G+NV     K V+  +WD  GQ++ R L   Y  ++   + V D ++     +    +  
Sbjct: 32  GFNVETVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHK 91

Query: 279 V-RTERGSDVIIMLVGNKTDLSDKRQVST---EEGERKAKELNVMFIETSAKAGYNVKQL 334
           +   E      ++++ NK DL      S      G    K         SA  G  + + 
Sbjct: 92  LLNEEELKGAPLLILANKQDLPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEG 151

Query: 335 F 335
            
Sbjct: 152 L 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 18/134 (13%)

Query: 220 SAKAGYNVKQVR--LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 276
           +  A + V + R  L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 37  NYTASFEVDKQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 96

Query: 277 DDVRTERGSDVIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELN-VMFIET 323
            +VR E   +  ++LVG K+D          LS+KRQ  VS E+G   AK++    ++E 
Sbjct: 97  GEVR-EFCPNTPVLLVGCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVEC 155

Query: 324 SAKAGYN-VKQLFR 336
           SAK   N V+ +F 
Sbjct: 156 SAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 54.5 bits (131), Expect = 6e-09
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 16/126 (12%)

Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 51  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 109

Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E GE+ A++L  V ++E SA     +K +F  
Sbjct: 110 LVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDE 169

Query: 337 RVAAAL 342
            + AAL
Sbjct: 170 AILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 225 YNVKQVRLQL--WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ---------TS 273
           Y+++    QL   DT+G   F ++    I    V ++V+ + N  SF +          +
Sbjct: 41  YSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILET 100

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER-KAKELNVMFIETSAKAGYNVK 332
           K     +T+    + +++ GNK D    R+V  +E E+    + N  + E SAK   N+ 
Sbjct: 101 KSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLD 160

Query: 333 QLFRRVA--AALP 343
           ++FR +   A LP
Sbjct: 161 EMFRALFSLAKLP 173

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 52/230 (22%), Positives = 84/230 (36%), Gaps = 80/230 (34%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           K V +G+ +VGKT L+  +  + F + Y  T+              FDN Y  T+ I   
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDN-YAVTVMIG-- 45

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDD 133
                       L L+DTAGQE +  L P     + V +V + + + +SF     KW+ +
Sbjct: 46  -------GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 98

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +                         HH                        +LVG + D
Sbjct: 99  IT------------------------HHC------------------PKTPFLLVGTQID 116

Query: 194 LSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
           L D            ++ ++ E GE+ A++L  V ++E SA     +K V
Sbjct: 117 LRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNV 166

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 15/122 (12%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
           KQ  L L+DTAGQE +  L P     + V ++ + + N  SF     +W+ +++ E   +
Sbjct: 46  KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPN 104

Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V  +L+G + DL D            ++ ++ E+G++ AKE+    ++E SA     +K 
Sbjct: 105 VPYLLIGTQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKT 164

Query: 334 LF 335
           +F
Sbjct: 165 VF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 17/164 (10%)

Query: 182 DVIIMLVGN----KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDT 237
           DV I+L+G+    K+ L     + +   E   + +  +  E +  A    ++V   + DT
Sbjct: 2   DVRIVLIGDEGVGKSSL-----IMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDT 56

Query: 238 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGNKT 296
           + + + R+ + + IR + V  +VY +   ++  +  +KW+  +R       II LVGNK+
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPII-LVGNKS 115

Query: 297 DLSDKRQVSTEEGE-----RKAKELNVMFIETSAKAGYNVKQLF 335
           DL D    +  E E      + +E+    +E SAK   NV ++F
Sbjct: 116 DLRDGSSQAGLEEEMLPIMNEFREIET-CVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 21/145 (14%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQE---RFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +F   SA+   + + V L LWDTAGQE   R R+L  SY + + V ++ + I + +S+  
Sbjct: 36  VFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTL--SYPQ-TNVFIICFSIASPSSYEN 92

Query: 272 TS-KWIDDVRTERGSDVIIMLVGNKTDLSD--------KRQ----VSTEEGERKAKELN- 317
              KW  +V      +V I+LVG K DL +        K Q    ++ ++G   AK+++ 
Sbjct: 93  VRHKWHPEV-CHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA 151

Query: 318 VMFIETSAKAGYNVKQLFRRVAAAL 342
           V ++E SA     VK++F     A+
Sbjct: 152 VKYLECSALNQDGVKEVFAEAVRAV 176

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 25/126 (19%)

Query: 185 IMLVGN----KTDL-----SDKRQVSTEE--GERKAKELNVMFIETSAKAGYNVKQVRLQ 233
           ++++G+    K+ L       +      E  G+  A +   +  +T            L 
Sbjct: 2   VVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGL----------LN 51

Query: 234 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS---KWIDDVRTERGSDVIIM 290
           +WD  G+E  +     +++ +   ++VYD+T+  S ++ S    W+ ++R + G  + ++
Sbjct: 52  IWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLR-KLGGKIPVI 110

Query: 291 LVGNKT 296
           LVGNK 
Sbjct: 111 LVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 19/170 (11%)

Query: 185 IMLVGN----KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240
           I L+G+    KT L  K  V  E  E   + L V F+E +        ++   +WD  GQ
Sbjct: 3   IGLLGDAQIGKTSLMVK-YVEGEFDEEYIQTLGVNFMEKTISIRGT--EITFSIWDLGGQ 59

Query: 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDL 298
             F +++P   +D+   + ++D+T  ++ +   +W    R  RG +   I +LVG K DL
Sbjct: 60  REFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEW---YRQARGFNKTAIPILVGTKYDL 116

Query: 299 ------SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
                  ++ ++ T++  + AK +    I  S     NV+++F+ V A +
Sbjct: 117 FADLPPEEQEEI-TKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKV 165

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 21/119 (17%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD---------TAGQE- 96
           VGKT+++ +F+   F   Y  T         + L  R   L + D         TAGQE 
Sbjct: 11  VGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEW 70

Query: 97  ---RFRSLIPSYIRDSTVAVVVYDITNANSFHQTS---KWIDDVRTERGSDVIIMLVGS 149
              RFR L     R+S   ++VYDI + +SFH      + I + R     +  I++VG+
Sbjct: 71  MDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 48.9 bits (116), Expect = 6e-07
 Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 60/218 (27%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           K K+V +G+   GKT+L+  F  D F   Y  T+              F+N Y A+  ID
Sbjct: 5   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTASFEID 49

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
                       + L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 50  TQR---------IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 100

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
            +++ E   +  ++LVG                         D+RT+  + V        
Sbjct: 101 GEIQ-EFCPNTKMLLVGCKS----------------------DLRTDVSTLV-------- 129

Query: 192 TDLSDKRQ--VSTEEGERKAKELNVM-FIETSAKAGYN 226
            +LS+ RQ  VS ++G   AK++    +IE SA    N
Sbjct: 130 -ELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 11/135 (8%)

Query: 216 FIETSAKAGYNV------KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
            + T    G+NV      K + L +WD  GQE+ R++   Y+ ++   V V D ++    
Sbjct: 24  LVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARL 83

Query: 270 HQTSKWIDDV-RTERGSDVIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIE-TS 324
            ++ K +  + + E    V ++L+ NK DL       +++     +K       +++  S
Sbjct: 84  DESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCS 143

Query: 325 AKAGYNVKQLFRRVA 339
           A  G  + + FR++A
Sbjct: 144 AVTGEGLAEAFRKLA 158

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT L+  +  D+F   Y  T+  D  + ++ +  +   L L+DTAGQE +  L P   
Sbjct: 11  VGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 69

Query: 107 RDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGS 149
             + V ++ + + N  SF     +W+ +++ E   +V  +L+G+
Sbjct: 70  PMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPYLLIGT 112

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+++ +        T   TIG  F  +T  +E + V+  +WD  GQ++ R L   Y  
Sbjct: 11  GKTTILYKLKLGEVVTT-IPTIG--FNVET--VEYKNVKFTVWDVGGQDKIRPLWKHYYE 65

Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDV 134
           ++   + V D ++     +    +  +
Sbjct: 66  NTDGLIFVVDSSDRERIEEAKNELHKL 92

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 60/211 (28%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           KLV +G+   GKT+++     D +  TY  T+              F+N Y A       
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FEN-YTAC------ 53

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDD 133
              +  E++ V L LWDT+G   + ++ P    DS   ++ +DI+    F     KW  +
Sbjct: 54  ---LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAE 110

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +  +      I+L+G                           +T+  +D+  ++     +
Sbjct: 111 I-LDYCPSTRILLIG--------------------------CKTDLRTDLSTLM-----E 138

Query: 194 LSDKRQ--VSTEEGERKAKELNV-MFIETSA 221
           LS+++Q  +S E+G   AK+L    ++E SA
Sbjct: 139 LSNQKQAPISYEQGCAMAKQLGAEAYLECSA 169

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 16/129 (12%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
           ++V L LWDT+G   + ++ P    DS   ++ +DI+    F     KW  ++  +    
Sbjct: 59  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEI-LDYCPS 117

Query: 287 VIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNV-MFIETSA-KAGYNVK 332
             I+L+G KTD          LS+++Q  +S E+G   AK+L    ++E SA  +  ++ 
Sbjct: 118 TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIH 177

Query: 333 QLFRRVAAA 341
            +FR  +  
Sbjct: 178 SIFRTASLL 186

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 224 GYNVKQVR-----LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
           G+N+++V      +++WD  GQ RFRS+   Y R     V V D  +          + D
Sbjct: 33  GFNMRKVTKGNVTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHD 92

Query: 279 VRTERGSDVIIMLV-GNKTDLSDK 301
           +  +   + I +LV GNK DL   
Sbjct: 93  LLEKPSLEGIPLLVLGNKNDLPGA 116

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 45/194 (23%), Positives = 72/194 (37%), Gaps = 59/194 (30%)

Query: 47  VGKTSLITRFMYDSF-DNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 101
           VGK+SLI   + + F +N      + TI  D        E     +   DT+ + + R+ 
Sbjct: 13  VGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-----ERVPTTIV--DTSSRPQDRAN 65

Query: 102 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH 161
           + + IR + V  +VY +            ++ +RT                         
Sbjct: 66  LAAEIRKANVICLVYSVD-------RPSTLERIRT------------------------- 93

Query: 162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE-----RKAKELNVMF 216
                   KW+  +R       II LVGNK+DL D    +  E E      + +E+    
Sbjct: 94  --------KWLPLIRRLGVKVPII-LVGNKSDLRDGSSQAGLEEEMLPIMNEFREIET-C 143

Query: 217 IETSAKAGYNVKQV 230
           +E SAK   NV +V
Sbjct: 144 VECSAKTLINVSEV 157

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 23/113 (20%)

Query: 237 TAGQE----RFRSLIPSYIRDSTVAVVVYDITNANSFHQTS---KWIDDVRTERGSDVII 289
           TAGQE    RFR L     R+S   ++VYDI + +SFH      + I + R     +  I
Sbjct: 65  TAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPI 119

Query: 290 MLVGNKTDLSDKRQVSTEEGERKA------KELNVMFIETSAKAGYNVKQLFR 336
           ++VGNK D    R        R        K     ++E SAK  +++  LF+
Sbjct: 120 VVVGNKRDQQRHRF-----APRHVLSVLVRKSWKCGYLECSAKYNWHILLLFK 167

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 56/223 (25%), Positives = 87/223 (39%), Gaps = 44/223 (19%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K V +G+ +VGKT LI     +     YQ      T + T +  D      Q  +  + 
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLL---ATHVPTVWAID------QYRVCQEV 53

Query: 74  LSKTMYLEDR-TVRLQLWDTAG----QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
           L ++  + D  +V L+LWDT G      RF     +Y R S V ++ + I + NS     
Sbjct: 54  LERSRDVVDGVSVSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVK 107

Query: 129 K-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W  ++R      V ++LVG        L   +A+        +D+V   R      + 
Sbjct: 108 TMWYPEIR-HFCPRVPVILVG------CKLDLRYAD--------LDEVNRARRPLARPIK 152

Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
             +       R V        AKEL + + ETS    + VK V
Sbjct: 153 NADILPPETGRAV--------AKELGIPYYETSVVTQFGVKDV 187

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-S 273
           +F   +A    + +++ L LWDT+G   + ++ P    DS   ++ +DI+   +      
Sbjct: 38  VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 97

Query: 274 KWIDDVRTERGSDVIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNVM-F 320
           KW  +++ E   +  ++LVG K+D          LS+ RQ  VS ++G   AK++    +
Sbjct: 98  KWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 156

Query: 321 IETSAKAGYN-VKQLF 335
           IE SA    N V+ +F
Sbjct: 157 IECSALQSENSVRDIF 172

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGS 285
           V + RL  WD  GQE  RSL   Y  +S   + V D T+   F+++    + V   E   
Sbjct: 48  VGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALE 107

Query: 286 DVIIMLVGNKTDLSDKRQVST-----EEGERKAKELNVMFIETSAKAGYNVKQ 333
            V ++++ NK DL D   V+      ++        + +    SA  G  V++
Sbjct: 108 GVPLLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEE 160

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 31/130 (23%)

Query: 230 VRLQLWDTAG----QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERG 284
           V L+LWDT G      RF     +Y R S V ++ + I + NS       W  ++R    
Sbjct: 66  VSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVKTMWYPEIR-HFC 118

Query: 285 SDVIIMLVGNKTDL-------------------SDKRQVSTEEGERKAKELNVMFIETSA 325
             V ++LVG K DL                    +   +  E G   AKEL + + ETS 
Sbjct: 119 PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSV 178

Query: 326 KAGYNVKQLF 335
              + VK +F
Sbjct: 179 VTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPS 104
           GKT+++ R  ++ F NT   T G  F ++ + +     + V    WD  GQE+ R L  S
Sbjct: 15  GKTTVLYRLKFNEFVNTV-PTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKS 71

Query: 105 YIR--DSTVAVV 114
           Y R  D  V VV
Sbjct: 72  YTRCTDGIVFVV 83

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+++ +        T   TIG  F  +T  +  + V+  +WD  GQE  R L  +Y  
Sbjct: 26  GKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQESLRPLWRNYFP 80

Query: 108 DSTVAVVVYD 117
           ++   + V D
Sbjct: 81  NTDAVIFVVD 90

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 11/104 (10%)

Query: 216 FIETSAKAGYNVKQVRL----------QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 265
           F+ T    G+N +++++            WD  GQE+ R L  SY R +   V V D  +
Sbjct: 28  FVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD 87

Query: 266 ANSFHQTSKWIDDV-RTERGSDVIIMLVGNKTDLSDKRQVSTEE 308
                +    +  + +      V ++++ NK DL +   VS  E
Sbjct: 88  VERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNALPVSEVE 131

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 25/117 (21%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           K+V +G+   GKT+L+  F  D++  +Y  T+              F+N Y A+  ID  
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV--------------FEN-YTASFEID-- 45

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKW 130
                     + L +WDT+G   + ++ P    DS   ++ +DI+   +      KW
Sbjct: 46  -------KHRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKW 95

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 223 AGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 277
            G+N+K V     +L +WD  GQ + R    +Y  ++ V + V D  +   F +  + + 
Sbjct: 47  QGFNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELV 106

Query: 278 DV-RTERGSDVIIMLVGNKTDLSD 300
           ++   E+ + V +++  NK DL  
Sbjct: 107 ELLEEEKLAGVPVLVFANKQDLLT 130

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 16/123 (13%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
            ++ L +WDT+G   + ++ P    DS   ++ +DI+   +      KW  + + E   +
Sbjct: 47  HRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQ-EFCPN 105

Query: 287 VIIMLVGNK----TDLSDKRQVST--------EEGERKAKELN-VMFIETSAKAGYN-VK 332
             ++LVG K    TDLS  R++S         E+G   A++L  V ++E S++   N V+
Sbjct: 106 AKLVLVGCKLDMRTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVR 165

Query: 333 QLF 335
            +F
Sbjct: 166 DVF 168

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
            + T    G+NV+ V     +  +WD  GQE  R L  +Y  ++   + V D  + +   
Sbjct: 39  IVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIE 98

Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD 300
           +  + +  +   E  +D  ++++ NK DL  
Sbjct: 99  EAKEELHALLNEEELADAPLLILANKQDLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 224 GYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
           G+NV     K V+  +WD  GQ++ R L   Y   +   + V D  + +   +  + +  
Sbjct: 42  GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHR 101

Query: 279 VRTERG-SDVIIMLVGNKTDLSD 300
           +  +R   D ++++  NK DL D
Sbjct: 102 IINDREMRDALLLVFANKQDLPD 124

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 18/119 (15%)

Query: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMY--DSFDNTYQ 66
           N + + K+V +G    GKT+ +               +  K  +IT       S      
Sbjct: 6   NKMIETKIVVIGPVGAGKTTFV-------------RALSDKPLVITEADASSVSGKGKRP 52

Query: 67  ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
            T+ +DF S  +   + T  + L+ T GQERF+ +     R +  A+V+ D +   +FH
Sbjct: 53  TTVAMDFGSIELD--EDTG-VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH 108

Length = 187

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 217 IETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           + T    G+NV     K +   +WD  GQ++ R L   Y  ++   + V D  + +   +
Sbjct: 39  VTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDE 98

Query: 272 TSKWIDDVRTERG-SDVIIMLVGNKTDLSD 300
             + +  +  E    D +I++  NK DL D
Sbjct: 99  AREELHRMLNEDELRDAVILVFANKQDLPD 128

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 28  SLITRFMYDSFDNT-YQATIVG-----KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 81
            L +      F    Y+  IVG     KT+++ +F+     +T   TIG    S    + 
Sbjct: 1   LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIG----SNVEEIV 55

Query: 82  DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
            + +R  +WD  GQE  RS   +Y  ++   ++V D T+
Sbjct: 56  YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD 94

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
KOG0094|consensus	221		100.0
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0078|consensus	207		99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
KOG0098|consensus	216		99.97
KOG0394|consensus	210		99.97
KOG0080|consensus	209		99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
PRK03003	472	GTP-binding protein Der; Reviewed	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
KOG0093|consensus	193		99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.96
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.96
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.96
KOG0087|consensus	222		99.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.96
KOG0086|consensus	214		99.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.96
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.95
KOG0088|consensus	218		99.95
KOG0079|consensus	198		99.95
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.95
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.95
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.95
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.95
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.95
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.95
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.95
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.95
PLN03110	216	Rab GTPase; Provisional	99.95
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.95
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.95
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.95
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.95
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.95
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.94
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.94
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.94
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.94
KOG0081|consensus	219		99.94
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.94
KOG0091|consensus	213		99.94
PRK00093	435	GTP-binding protein Der; Reviewed	99.94
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.94
PLN03108	210	Rab family protein; Provisional	99.94
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.94
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.94
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.94
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.94
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.94
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.94
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.94
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.93
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.93
PLN03118	211	Rab family protein; Provisional	99.93
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.93
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.93
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.93
KOG0095|consensus	213		99.93
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.93
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.93
COG1160	444	Predicted GTPases [General function prediction onl	99.93
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.93
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.93
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.93
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.93
KOG0083|consensus	192		99.93
KOG0393|consensus	198		99.92
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.92
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.92
KOG0097|consensus	215		99.92
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.92
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.91
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.91
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.91
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.91
KOG0395|consensus	196		99.91
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.91
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.91
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.91
PLN00223	181	ADP-ribosylation factor; Provisional	99.91
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.91
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.91
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.9
PTZ00133	182	ADP-ribosylation factor; Provisional	99.9
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.9
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.9
PLN00023	334	GTP-binding protein; Provisional	99.9
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.9
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.9
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.89
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.89
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.88
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.88
PTZ00099	176	rab6; Provisional	99.88
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.88
KOG0070|consensus	181		99.87
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.87
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.87
KOG0073|consensus	185		99.86
KOG0078|consensus	207		99.86
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.86
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.86
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.85
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.84
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.84
KOG0098|consensus	216		99.84
KOG4252|consensus	246		99.84
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.83
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.83
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.83
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.82
KOG0080|consensus	209		99.82
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.82
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.82
KOG0087|consensus	222		99.81
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.81
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.81
PRK12299	335	obgE GTPase CgtA; Reviewed	99.8
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.8
KOG0086|consensus	214		99.8
KOG0091|consensus	213		99.79
KOG0083|consensus	192		99.79
KOG0071|consensus	180		99.79
PRK04213	201	GTP-binding protein; Provisional	99.79
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.78
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.78
KOG0079|consensus	198		99.78
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.78
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.78
COG1100	219	GTPase SAR1 and related small G proteins [General	99.78
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.77
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.77
PRK15494	339	era GTPase Era; Provisional	99.77
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.77
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.77
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.76
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.76
KOG0095|consensus	213		99.75
KOG0075|consensus	186		99.75
KOG1673|consensus	205		99.75
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.75
KOG3883|consensus	198		99.75
cd00881	189	GTP_translation_factor GTP translation factor fami	99.75
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.74
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.74
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.74
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.74
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.74
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.74
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.73
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.73
KOG0097|consensus	215		99.72
PRK05433	600	GTP-binding protein LepA; Provisional	99.72
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.72
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.71
KOG0096|consensus	216		99.71
PRK13351	687	elongation factor G; Reviewed	99.7
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.7
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.7
PRK12297	424	obgE GTPase CgtA; Reviewed	99.7
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.7
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.69
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.69
CHL00189	742	infB translation initiation factor 2; Provisional	99.68
KOG0076|consensus	197		99.68
PRK12296	500	obgE GTPase CgtA; Reviewed	99.68
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.68
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.68
PRK11058	426	GTPase HflX; Provisional	99.67
KOG0072|consensus	182		99.67
COG1159	298	Era GTPase [General function prediction only]	99.67
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.67
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.67
PRK00089	292	era GTPase Era; Reviewed	99.67
PRK10218	607	GTP-binding protein; Provisional	99.66
PRK04004	586	translation initiation factor IF-2; Validated	99.66
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.66
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.66
PRK05306	787	infB translation initiation factor IF-2; Validated	99.65
PRK12298	390	obgE GTPase CgtA; Reviewed	99.65
KOG0395|consensus	196		99.65
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.65
KOG0074|consensus	185		99.64
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.64
PRK03003	472	GTP-binding protein Der; Reviewed	99.64
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.62
KOG4423|consensus	229		99.62
KOG1423|consensus	379		99.61
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.61
PRK12739	691	elongation factor G; Reviewed	99.61
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.61
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.6
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.6
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.59
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.59
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.58
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.58
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.58
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.58
PRK12317	425	elongation factor 1-alpha; Reviewed	99.57
PRK00007	693	elongation factor G; Reviewed	99.57
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.56
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.55
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.55
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.55
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.55
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.55
COG2229	187	Predicted GTPase [General function prediction only	99.54
PRK12740	668	elongation factor G; Reviewed	99.54
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.54
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.54
COG1163	365	DRG Predicted GTPase [General function prediction	99.53
PRK12736	394	elongation factor Tu; Reviewed	99.53
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.53
KOG0462|consensus	650		99.52
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.52
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.52
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.51
PRK12735	396	elongation factor Tu; Reviewed	99.51
PRK00093	435	GTP-binding protein Der; Reviewed	99.5
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.5
KOG1707|consensus	625		99.5
KOG4252|consensus	246		99.49
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.48
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.48
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.46
COG0486	454	ThdF Predicted GTPase [General function prediction	99.46
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.46
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.45
PRK00049	396	elongation factor Tu; Reviewed	99.44
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.44
PRK09602	396	translation-associated GTPase; Reviewed	99.43
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.43
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.42
COG0218	200	Predicted GTPase [General function prediction only	99.42
CHL00071	409	tufA elongation factor Tu	99.4
PLN03127	447	Elongation factor Tu; Provisional	99.4
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.4
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.39
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.38
PLN00043	447	elongation factor 1-alpha; Provisional	99.38
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.38
KOG0075|consensus	186		99.38
PRK09866	741	hypothetical protein; Provisional	99.37
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.36
COG1160	444	Predicted GTPases [General function prediction onl	99.36
COG2262	411	HflX GTPases [General function prediction only]	99.36
PLN03126	478	Elongation factor Tu; Provisional	99.36
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.36
COG1084	346	Predicted GTPase [General function prediction only	99.34
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.34
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.34
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.33
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.32
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.3
KOG1673|consensus	205		99.28
KOG0077|consensus	193		99.27
KOG0074|consensus	185		99.27
COG0536	369	Obg Predicted GTPase [General function prediction	99.27
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.26
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.26
KOG1191|consensus	531		99.26
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.26
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.26
PTZ00141	446	elongation factor 1- alpha; Provisional	99.26
KOG0096|consensus	216		99.25
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.24
PLN00023	334	GTP-binding protein; Provisional	99.24
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.23
KOG0465|consensus	721		99.22
KOG1489|consensus	366		99.21
KOG3905|consensus	473		99.21
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.21
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.19
KOG0090|consensus	238		99.16
KOG3883|consensus	198		99.13
KOG0393|consensus	198		99.13
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.12
PRK14845	1049	translation initiation factor IF-2; Provisional	99.12
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.12
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.12
PTZ00416	836	elongation factor 2; Provisional	99.11
KOG0082|consensus	354		99.09
KOG1145|consensus	683		99.09
COG1100	219	GTPase SAR1 and related small G proteins [General	99.08
PRK13768	253	GTPase; Provisional	99.06
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.05
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.05
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.05
PRK07560	731	elongation factor EF-2; Reviewed	99.04
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.03
COG3596	296	Predicted GTPase [General function prediction only	99.03
COG2229	187	Predicted GTPase [General function prediction only	99.03
KOG4423|consensus	229		99.02
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.01
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.0
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.0
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.98
KOG1532|consensus	366		98.97
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.96
PTZ00258	390	GTP-binding protein; Provisional	98.95
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.95
KOG1144|consensus	1064		98.94
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.94
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.94
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.93
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.89
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.88
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.87
KOG0464|consensus	753		98.85
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.85
KOG1145|consensus	683		98.84
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.84
KOG1486|consensus	364		98.83
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.83
PRK12317	425	elongation factor 1-alpha; Reviewed	98.81
KOG1490|consensus	620		98.81
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.8
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.79
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.77
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.77
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.76
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.76
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.76
KOG1707|consensus	625		98.76
PRK12289	352	GTPase RsgA; Reviewed	98.76
KOG3886|consensus	295		98.75
KOG0071|consensus	180		98.75
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.75
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.73
KOG0458|consensus	603		98.72
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.72
KOG0468|consensus	971		98.71
KOG0394|consensus	210		98.7
PRK12288	347	GTPase RsgA; Reviewed	98.67
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.67
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.66
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.65
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.65
PRK00098	298	GTPase RsgA; Reviewed	98.65
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.64
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.63
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.63
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.63
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.63
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.62
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.62
KOG0084|consensus	205		98.61
KOG0094|consensus	221		98.61
KOG0092|consensus	200		98.6
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.58
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.57
cd04105	203	SR_beta Signal recognition particle receptor, beta	98.55
KOG0099|consensus	379		98.52
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.51
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.5
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.48
PRK09601	364	GTP-binding protein YchF; Reviewed	98.47
PLN00043	447	elongation factor 1-alpha; Provisional	98.47
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.46
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.46
CHL00071	409	tufA elongation factor Tu	98.46
KOG1143|consensus	591		98.45
KOG1487|consensus	358		98.44
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.43
KOG1489|consensus	366		98.42
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.41
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.41
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.41
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.4
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.36
KOG0461|consensus	522		98.35
KOG0077|consensus	193		98.35
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.35
KOG0705|consensus	749		98.34
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.34
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.33
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.32
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.31
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.29
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.28
PLN03126	478	Elongation factor Tu; Provisional	98.28
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.26
PRK04004	586	translation initiation factor IF-2; Validated	98.24
COG0486	454	ThdF Predicted GTPase [General function prediction	98.23
KOG0460|consensus	449		98.23
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.22
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.2
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.19
PTZ00141	446	elongation factor 1- alpha; Provisional	98.18
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.16
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.15
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.13
PRK12288	347	GTPase RsgA; Reviewed	98.11
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.08
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.08
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.08
PRK01889	356	GTPase RsgA; Reviewed	98.08
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.08
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.06
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.05
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.05
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.05
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.03
KOG0467|consensus	887		98.03
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.02
KOG0085|consensus	359		98.02
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.0
KOG0070|consensus	181		97.99
KOG0410|consensus	410		97.97
PRK10416	318	signal recognition particle-docking protein FtsY;	97.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.96
PRK13796	365	GTPase YqeH; Provisional	97.95
KOG1954|consensus	532		97.95
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	97.95
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.95
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	97.94
KOG1547|consensus	336		97.92
KOG2655|consensus	366		97.91
KOG0088|consensus	218		97.91
KOG2486|consensus	320		97.91
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.89
COG1161	322	Predicted GTPases [General function prediction onl	97.88
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.87
KOG0463|consensus	641		97.87
KOG0093|consensus	193		97.87
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.86
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.86
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.86
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	97.85
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.85
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.85
PRK09866	741	hypothetical protein; Provisional	97.84
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	97.83
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.83
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.83
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.82
COG1162	301	Predicted GTPases [General function prediction onl	97.8
cd01881	176	Obg_like The Obg-like subfamily consists of five w	97.8
PRK14974	336	cell division protein FtsY; Provisional	97.76
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.75
PRK13796	365	GTPase YqeH; Provisional	97.74
CHL00189	742	infB translation initiation factor 2; Provisional	97.72
COG1084	346	Predicted GTPase [General function prediction only	97.72
KOG1491|consensus	391		97.71
PTZ00099	176	rab6; Provisional	97.71
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.71
PRK12289	352	GTPase RsgA; Reviewed	97.7
KOG0073|consensus	185		97.69
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.69
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.68
COG1162	301	Predicted GTPases [General function prediction onl	97.67
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.67
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.66
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.66
cd00881	189	GTP_translation_factor GTP translation factor fami	97.66
PRK10867	433	signal recognition particle protein; Provisional	97.62
cd03112	158	CobW_like The function of this protein family is u	97.61
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.6
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.59
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	97.58
PRK00098	298	GTPase RsgA; Reviewed	97.58
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	97.57
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	97.57
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.54
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.53
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.53
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.53
TIGR00959	428	ffh signal recognition particle protein. This mode	97.52
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	97.5
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	97.5
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.49
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.49

>KOG0094|consensus

Probab=100.00  E-value=6.8e-35  Score=232.53  Aligned_cols=185  Identities=83%  Similarity=1.202  Sum_probs=163.0

Q ss_pred             CCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725          2 SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE   81 (355)
Q Consensus         2 ~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   81 (355)
                      +....++.+++.+||+++|+.+||||||++||..                       +.++.+|++|||++|....+.+.
T Consensus        11 ~~~~~~~~~~k~~KlVflGdqsVGKTslItRf~y-----------------------d~fd~~YqATIGiDFlskt~~l~   67 (221)
T KOG0094|consen   11 QTMATFGAPLKKYKLVFLGDQSVGKTSLITRFMY-----------------------DKFDNTYQATIGIDFLSKTMYLE   67 (221)
T ss_pred             HhccccCccceEEEEEEEccCccchHHHHHHHHH-----------------------hhhcccccceeeeEEEEEEEEEc
Confidence            4455678889999999999999999999999999                       66677778888999999999999


Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccc
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH  161 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
                      +..+++++|||+||++|+.+.+.|+++++++|+|||+++..||++...|++...+.+++                     
T Consensus        68 d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs---------------------  126 (221)
T KOG0094|consen   68 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS---------------------  126 (221)
T ss_pred             CcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCC---------------------
Confidence            99999999999999999999999999999999999999999999999998877543110                     


Q ss_pred             cCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcc
Q psy15725        162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQE  241 (355)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~  241 (355)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (221)
T KOG0094|consen  127 --------------------------------------------------------------------------------  126 (221)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEE
Q psy15725        242 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI  321 (355)
Q Consensus       242 ~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  321 (355)
                                                                 .++-|+||+||.||.+++++..+++...++.++..|.
T Consensus       127 -------------------------------------------~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~  163 (221)
T KOG0094|consen  127 -------------------------------------------DDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFI  163 (221)
T ss_pred             -------------------------------------------CceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEE
Confidence                                                       2345778999999999999999999989999999999


Q ss_pred             EecCCCCCCHHHHHHHHHHHcCCCCCCCCCCC
Q psy15725        322 ETSAKAGYNVKQLFRRVAAALPGMDSTENKPP  353 (355)
Q Consensus       322 ~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~~~  353 (355)
                      ++||+.|.||.++|..|...++.....+..++
T Consensus       164 etsak~g~NVk~lFrrIaa~l~~~~~~~~~~~  195 (221)
T KOG0094|consen  164 ETSAKAGENVKQLFRRIAAALPGMEVLEILSK  195 (221)
T ss_pred             EecccCCCCHHHHHHHHHHhccCccccccccc
Confidence            99999999999999999999998866554443

>KOG0084|consensus

Probab=100.00  E-value=1.9e-34  Score=231.10  Aligned_cols=172  Identities=43%  Similarity=0.711  Sum_probs=153.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      -..+||+++|++|||||||+.||..                       +.+.+++..|+|++|.-+++.++++.+.+++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~-----------------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIW   63 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKD-----------------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIW   63 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhcc-----------------------CCcchhhcceeeeEEEEEEeeecceEEEEEee
Confidence            3579999999999999999999999                       66677778899999999999999999999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||+||++|+.+...+|++++|||+|||+++.+||+++..|+.++++.                                 
T Consensus        64 DTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~---------------------------------  110 (205)
T KOG0084|consen   64 DTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRY---------------------------------  110 (205)
T ss_pred             eccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhh---------------------------------
Confidence            99999999999999999999999999999999999998888887542                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (205)
T KOG0084|consen  111 --------------------------------------------------------------------------------  110 (205)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcE-EEEecCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY  329 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~~~  329 (355)
                                                      ..+++|.++|+||+|+.+.+.+..+++..++...+++ ++++|||++.
T Consensus       111 --------------------------------~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~  158 (205)
T KOG0084|consen  111 --------------------------------ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDST  158 (205)
T ss_pred             --------------------------------ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence                                            1134788999999999888999999999999999998 9999999999


Q ss_pred             CHHHHHHHHHHHcCCCCCCCC
Q psy15725        330 NVKQLFRRVAAALPGMDSTEN  350 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~~~~~  350 (355)
                      ||+++|..|+..+..+.....
T Consensus       159 NVe~~F~~la~~lk~~~~~~~  179 (205)
T KOG0084|consen  159 NVEDAFLTLAKELKQRKGLHV  179 (205)
T ss_pred             CHHHHHHHHHHHHHHhcccCC
Confidence            999999999999886654433

>KOG0092|consensus

Probab=100.00  E-value=2e-32  Score=218.56  Aligned_cols=172  Identities=44%  Similarity=0.814  Sum_probs=151.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ..++||+++|+.+||||||+-|+..++|.                       ....||+|..|..+.+.++...+.+.||
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~-----------------------e~~e~TIGaaF~tktv~~~~~~ikfeIW   59 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFH-----------------------ENIEPTIGAAFLTKTVTVDDNTIKFEIW   59 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccc-----------------------cccccccccEEEEEEEEeCCcEEEEEEE
Confidence            46799999999999999999999995554                       4446778999999999999999999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||+|+++|..+.+.|||+++++|+|||+++.+||..++.|..++.+.                                 
T Consensus        60 DTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~---------------------------------  106 (200)
T KOG0092|consen   60 DTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQ---------------------------------  106 (200)
T ss_pred             EcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhh---------------------------------
Confidence            99999999999999999999999999999999999888888777542                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (200)
T KOG0092|consen  107 --------------------------------------------------------------------------------  106 (200)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ..+++-|.||+||.||.+.+++..+++..++...+..++++|||+|.|
T Consensus       107 --------------------------------~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~N  154 (200)
T KOG0092|consen  107 --------------------------------ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGEN  154 (200)
T ss_pred             --------------------------------CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccC
Confidence                                            113455667788888777788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCC
Q psy15725        331 VKQLFRRVAAALPGMDSTEN  350 (355)
Q Consensus       331 v~~l~~~l~~~i~~~~~~~~  350 (355)
                      |+++|..|.+.++..+.++.
T Consensus       155 v~~if~~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  155 VNEIFQAIAEKLPCSDPQER  174 (200)
T ss_pred             HHHHHHHHHHhccCcccccc
Confidence            99999999999998876655

>KOG0078|consensus

Probab=99.97  E-value=5.3e-32  Score=220.43  Aligned_cols=165  Identities=45%  Similarity=0.769  Sum_probs=151.2

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      +-...-..+||+++|++|||||||+.||..                       +.+...+..|+|++|..+.+.++++.+
T Consensus         5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d-----------------------~~f~~~~~sTiGIDFk~kti~l~g~~i   61 (207)
T KOG0078|consen    5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSD-----------------------DSFNTSFISTIGIDFKIKTIELDGKKI   61 (207)
T ss_pred             ccCCcceEEEEEEECCCCCchhHhhhhhhh-----------------------ccCcCCccceEEEEEEEEEEEeCCeEE
Confidence            333555679999999999999999999998                       666777788999999999999999999


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      .+++|||+||++|+.+...|+++|+++++|||+++..||+++..|++.++.+.                           
T Consensus        62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a---------------------------  114 (207)
T KOG0078|consen   62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA---------------------------  114 (207)
T ss_pred             EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC---------------------------
Confidence            99999999999999999999999999999999999999999999999998653                           


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEE
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL  234 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i  234 (355)
                                    ...+|++|||||+|+...|.++.++++++|.++++.|.++||+++.|+++.++.+
T Consensus       115 --------------~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~L  169 (207)
T KOG0078|consen  115 --------------SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSL  169 (207)
T ss_pred             --------------CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHH
Confidence                          3489999999999999999999999999999999999999999999998765544

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=1.7e-30  Score=218.29  Aligned_cols=173  Identities=33%  Similarity=0.581  Sum_probs=140.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|.+|||||||+.+|..+.+.                       ..+.++++.++....+.+++..+.+++||
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~-----------------------~~~~~t~~~~~~~~~i~~~~~~~~l~iwD   61 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTE-----------------------SPYGYNMGIDYKTTTILLDGRRVKLQLWD   61 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC-----------------------CCCCCcceeEEEEEEEEECCEEEEEEEEe
Confidence            5699999999999999999999985543                       33445667777777777888889999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |+|+++|..++..+++.+|++|+|||++++.+|+++..|++++...                                  
T Consensus        62 t~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~----------------------------------  107 (189)
T cd04121          62 TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH----------------------------------  107 (189)
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----------------------------------
Confidence            9999999999999999999999999999999999998888776421                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (189)
T cd04121         108 --------------------------------------------------------------------------------  107 (189)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     . .+.|+++|+||.|+...+.+..+++..+++..++++++|||++|.||
T Consensus       108 -------------------------------~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V  155 (189)
T cd04121         108 -------------------------------A-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNI  155 (189)
T ss_pred             -------------------------------C-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence                                           0 23566666666666545566677788888888999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCC
Q psy15725        332 KQLFRRVAAALPGMDSTENKPP  353 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~~~~~~~~  353 (355)
                      +++|++|++.+.....+...+|
T Consensus       156 ~~~F~~l~~~i~~~~~~~~~~~  177 (189)
T cd04121         156 TESFTELARIVLMRHGRPPQSP  177 (189)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999998886665544443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0098|consensus

Probab=99.97  E-value=2.1e-31  Score=210.81  Aligned_cols=158  Identities=41%  Similarity=0.748  Sum_probs=145.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+|+.++|+.|||||||+-||+.+.|.+.                       ...|+|+++..+.++++++.+++++|
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~-----------------------hd~TiGvefg~r~~~id~k~IKlqiw   60 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPV-----------------------HDLTIGVEFGARMVTIDGKQIKLQIW   60 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCcccc-----------------------ccceeeeeeceeEEEEcCceEEEEEE
Confidence            3789999999999999999999999665444                       45678999999999999999999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||+|++.|+.++..+|+.+.++|+|||++++++|..+..|+.+++++.                                
T Consensus        61 DtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~--------------------------------  108 (216)
T KOG0098|consen   61 DTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS--------------------------------  108 (216)
T ss_pred             ecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc--------------------------------
Confidence            999999999999999999999999999999999999999999998753                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEE
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL  232 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~  232 (355)
                               ..++.++|+|||+|+...+.+..+++++++++.+..+.++|++++.++++.+.
T Consensus       109 ---------~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen  109 ---------NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             ---------CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence                     34899999999999999999999999999999999999999999999987653

>KOG0394|consensus

Probab=99.97  E-value=2e-30  Score=204.97  Aligned_cols=175  Identities=35%  Similarity=0.623  Sum_probs=147.8

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ....-+||.++|++|||||||+|++++++|                       ...+..|||.+|..+.+.++++.+.++
T Consensus         5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF-----------------------~~qykaTIgadFltKev~Vd~~~vtlQ   61 (210)
T KOG0394|consen    5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKF-----------------------SQQYKATIGADFLTKEVQVDDRSVTLQ   61 (210)
T ss_pred             CcccceEEEEeCCCCccHHHHHHHHHHHHH-----------------------HHHhccccchhheeeEEEEcCeEEEEE
Confidence            334558999999999999999999999555                       444566779999999999999999999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||+|+++|+.+...++|++|.-++|||++++.||+++..|.++....+++                            
T Consensus        62 iWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~----------------------------  113 (210)
T KOG0394|consen   62 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASP----------------------------  113 (210)
T ss_pred             EEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCC----------------------------
Confidence            9999999999999999999999999999999999999999999988643211                            


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                               ...                                                                    
T Consensus       114 ---------~~P--------------------------------------------------------------------  116 (210)
T KOG0394|consen  114 ---------QDP--------------------------------------------------------------------  116 (210)
T ss_pred             ---------CCC--------------------------------------------------------------------
Confidence                     111                                                                    


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC--cccCCHHHHHHHHhhcC-cEEEEecC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD--KRQVSTEEGERKAKELN-VMFIETSA  325 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~~-~~~~~~SA  325 (355)
                                                          +.-|.|+++||+|+..  ++.++...+..+++..| +|||++||
T Consensus       117 ------------------------------------e~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen  117 ------------------------------------ETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             ------------------------------------CcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence                                                3456777777777643  37888888989887766 79999999


Q ss_pred             CCCCCHHHHHHHHHHHcCCCCC
Q psy15725        326 KAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       326 ~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      |.+.||+++|+.+++.......
T Consensus       161 K~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             cccccHHHHHHHHHHHHHhccc
Confidence            9999999999999998876543

>KOG0080|consensus

Probab=99.97  E-value=3.9e-31  Score=203.82  Aligned_cols=161  Identities=40%  Similarity=0.696  Sum_probs=145.7

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ....-.+||+++|.+|||||+|+-||+.+.+++.                       ...|+|.+|..+.+.++++..++
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~-----------------------~~~tIGvDFkvk~m~vdg~~~Kl   62 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDL-----------------------HPTTIGVDFKVKVMQVDGKRLKL   62 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCcc-----------------------CCceeeeeEEEEEEEEcCceEEE
Confidence            4556679999999999999999999999555444                       44568999999999999999999


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      .+|||+|+++|+.+.+.|++++.++|+|||++.+++|.++..|++++..+                              
T Consensus        63 aiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y------------------------------  112 (209)
T KOG0080|consen   63 AIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLY------------------------------  112 (209)
T ss_pred             EEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhh------------------------------
Confidence            99999999999999999999999999999999999999999999999865                              


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                ...+++..++||||.|..+.|.++.+++..+++++++.|.++||++..+++.++
T Consensus       113 ----------stn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F  166 (209)
T KOG0080|consen  113 ----------STNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF  166 (209)
T ss_pred             ----------cCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence                      344578889999999998889999999999999999999999999988877543

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=8.9e-30  Score=215.90  Aligned_cols=163  Identities=37%  Similarity=0.694  Sum_probs=135.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      .|+++|..|||||||++||..+.                       +...+.+|++.++..+.+.++++.+.+++|||+|
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~-----------------------f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG   58 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDT-----------------------FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAG   58 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC-----------------------CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCC
Confidence            58999999999999999999844                       4444566778788888888888889999999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      +++|..++..+++++|++|+|||++++++|+.+..|+..+...                                     
T Consensus        59 qe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-------------------------------------  101 (202)
T cd04120          59 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY-------------------------------------  101 (202)
T ss_pred             chhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-------------------------------------
Confidence            9999999999999999999999999999999998887665321                                     


Q ss_pred             ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS  254 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~  254 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (202)
T cd04120         102 --------------------------------------------------------------------------------  101 (202)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhc-CcEEEEecCCCCCCHHH
Q psy15725        255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~SA~~~~gv~~  333 (355)
                                                  ...+.|+++|+||+|+...+.+...++..+++.. ++.+++|||++|.||++
T Consensus       102 ----------------------------~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e  153 (202)
T cd04120         102 ----------------------------ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDE  153 (202)
T ss_pred             ----------------------------CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHH
Confidence                                        0024667777777777655667677777777664 68999999999999999


Q ss_pred             HHHHHHHHcCCC
Q psy15725        334 LFRRVAAALPGM  345 (355)
Q Consensus       334 l~~~l~~~i~~~  345 (355)
                      +|++|++.+.+.
T Consensus       154 ~F~~l~~~~~~~  165 (202)
T cd04120         154 IFLKLVDDILKK  165 (202)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.97  E-value=1.4e-29  Score=241.79  Aligned_cols=260  Identities=23%  Similarity=0.200  Sum_probs=164.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ...+|+++|++|||||||+|+|++......                      ...+++..+.......+.+  ..+.+||
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v----------------------~~~~gvT~d~~~~~~~~~~--~~~~l~D   92 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVV----------------------EDVPGVTRDRVSYDAEWNG--RRFTVVD   92 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccc----------------------cCCCCCCEeeEEEEEEECC--cEEEEEe
Confidence            346899999999999999999998542111                      1122222233333333333  4688999


Q ss_pred             cCCccc--------ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         92 TAGQER--------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        92 ~~g~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      |||.+.        +...+..+++.+|++|+|||+++..++.. ..|...++.                           
T Consensus        93 T~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---------------------------  144 (472)
T PRK03003         93 TGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---------------------------  144 (472)
T ss_pred             CCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---------------------------
Confidence            999763        33345567889999999999999766543 233333322                           


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE-------------
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV-------------  230 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i-------------  230 (355)
                                       .++|+++|+||+|+....   .+....+....+.+ +.+|+.++.+++.+             
T Consensus       145 -----------------~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~~~-~~iSA~~g~gi~eL~~~i~~~l~~~~~  203 (472)
T PRK03003        145 -----------------SGKPVILAANKVDDERGE---ADAAALWSLGLGEP-HPVSALHGRGVGDLLDAVLAALPEVPR  203 (472)
T ss_pred             -----------------cCCCEEEEEECccCCccc---hhhHHHHhcCCCCe-EEEEcCCCCCcHHHHHHHHhhcccccc
Confidence                             278999999999985321   11111111122222 24555544433221             


Q ss_pred             --------------------------------------------------------EEEEEeCCCc----------cccc
Q psy15725        231 --------------------------------------------------------RLQLWDTAGQ----------ERFR  244 (355)
Q Consensus       231 --------------------------------------------------------~~~i~D~~g~----------~~~~  244 (355)
                                                                              .+.+|||+|.          +.+.
T Consensus       204 ~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~  283 (472)
T PRK03003        204 VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYA  283 (472)
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHH
Confidence                                                                    3458899984          2222


Q ss_pred             ccc-cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC--CHHHH-HHHHhhcCcEE
Q psy15725        245 SLI-PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEG-ERKAKELNVMF  320 (355)
Q Consensus       245 ~~~-~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~-~~~~~~~~~~~  320 (355)
                      .+. ..++..+|++++|+|+++..+.++.. ++..+..   .++|+++|+||+|+.+....  ...+. ..+.....+++
T Consensus       284 ~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  359 (472)
T PRK03003        284 SLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR  359 (472)
T ss_pred             HHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence            222 23568999999999999998877763 4444444   58999999999999643211  01111 11222234689


Q ss_pred             EEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        321 IETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      +++||++|.||+++|+.+.+.+......
T Consensus       360 ~~~SAk~g~gv~~lf~~i~~~~~~~~~~  387 (472)
T PRK03003        360 VNISAKTGRAVDKLVPALETALESWDTR  387 (472)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999988755443

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.96  E-value=7.6e-29  Score=207.26  Aligned_cols=176  Identities=26%  Similarity=0.481  Sum_probs=139.7

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      +...+||+++|++|||||||++|+..+.+...|                       .||++..+ ...+.+++..+.+.+
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~-----------------------~pT~~~~~-~~~~~~~~~~~~l~i   57 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-----------------------VPTVFENY-TASFEIDTQRIELSL   57 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCcc-----------------------CCceeeee-EEEEEECCEEEEEEE
Confidence            456799999999999999999999996655544                       44555444 345677888899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |||+|+++|..+++.+++++|++++|||++++.+|+++ ..|+++++...                              
T Consensus        58 wDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~------------------------------  107 (182)
T cd04172          58 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC------------------------------  107 (182)
T ss_pred             EECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC------------------------------
Confidence            99999999999999999999999999999999999997 78999986531                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                  +++|++|||||+|+.+...                                                 
T Consensus       108 ------------~~~piilVgNK~DL~~~~~-------------------------------------------------  126 (182)
T cd04172         108 ------------PNTKMLLVGCKSDLRTDLT-------------------------------------------------  126 (182)
T ss_pred             ------------CCCCEEEEeEChhhhcChh-------------------------------------------------
Confidence                        3689999999999732100                                                 


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKA  327 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~  327 (355)
                                                ....+...                 ..+.+..+++.++++..++ +|++|||++
T Consensus       127 --------------------------~~~~~~~~-----------------~~~~v~~~~~~~~a~~~~~~~~~E~SAk~  163 (182)
T cd04172         127 --------------------------TLVELSNH-----------------RQTPVSYDQGANMAKQIGAATYIECSALQ  163 (182)
T ss_pred             --------------------------hHHHHHhc-----------------CCCCCCHHHHHHHHHHcCCCEEEECCcCC
Confidence                                      00001110                 1245778889999999996 999999999


Q ss_pred             CCC-HHHHHHHHHHHcC
Q psy15725        328 GYN-VKQLFRRVAAALP  343 (355)
Q Consensus       328 ~~g-v~~l~~~l~~~i~  343 (355)
                      |.| |+++|+.+++.+.
T Consensus       164 ~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         164 SENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=7.8e-29  Score=211.38  Aligned_cols=175  Identities=34%  Similarity=0.590  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEec
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDT   92 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~   92 (355)
                      +||+++|++|||||||+++|+++.+                       ...+.||++.++....+.++ +..+.+.+|||
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~-----------------------~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt   57 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIF-----------------------SQHYKATIGVDFALKVIEWDPNTVVRLQLWDI   57 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC-----------------------CCCCCCceeEEEEEEEEEECCCCEEEEEEEEC
Confidence            5899999999999999999999544                       34455666777777777777 78899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      ||++.|..++..+++++|++++|||++++++|+.+..|+..+.....                                 
T Consensus        58 ~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~---------------------------------  104 (201)
T cd04107          58 AGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVT---------------------------------  104 (201)
T ss_pred             CCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc---------------------------------
Confidence            99999999999999999999999999999999999999887743100                                 


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (201)
T cd04107         105 --------------------------------------------------------------------------------  104 (201)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCCH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNV  331 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~gv  331 (355)
                              .                    ....++|+++|+||+|+...+.+..++...+++..+ ++++++||++|.||
T Consensus       105 --------~--------------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v  156 (201)
T cd04107         105 --------L--------------------PNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINI  156 (201)
T ss_pred             --------c--------------------cCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCH
Confidence                    0                    000357888888888886556677778888888887 69999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCC
Q psy15725        332 KQLFRRVAAALPGMDSTENKP  352 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~~~~~~~  352 (355)
                      +++|++|++.+.+.++....+
T Consensus       157 ~e~f~~l~~~l~~~~~~~~~~  177 (201)
T cd04107         157 EEAMRFLVKNILANDKNLQQA  177 (201)
T ss_pred             HHHHHHHHHHHHHhchhhHhh
Confidence            999999999998776544433

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093|consensus

Probab=99.96  E-value=2.4e-29  Score=191.07  Aligned_cols=169  Identities=42%  Similarity=0.744  Sum_probs=151.3

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      -.|++++|...||||+|+.|+.+                       +++...+-+|+|++|..+.+.-..+.+.+++|||
T Consensus        21 mfKlliiGnssvGKTSfl~ry~d-----------------------dSFt~afvsTvGidFKvKTvyr~~kRiklQiwDT   77 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYAD-----------------------DSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDT   77 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhc-----------------------cccccceeeeeeeeEEEeEeeecccEEEEEEEec
Confidence            36999999999999999999998                       6677777889999999998877788899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      .|+++|+.+.-.++++++++|+|||.+|.+||..++.|.-+|+.+                                   
T Consensus        78 agqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIkty-----------------------------------  122 (193)
T KOG0093|consen   78 AGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTY-----------------------------------  122 (193)
T ss_pred             ccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheee-----------------------------------
Confidence            999999999999999999999999999999999999996555210                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (193)
T KOG0093|consen  123 --------------------------------------------------------------------------------  122 (193)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                             ++                       .+.|||+|+||||+.+++.++.+..+.+++++|+.+|++|||.|.||+
T Consensus       123 -------sw-----------------------~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk  172 (193)
T KOG0093|consen  123 -------SW-----------------------DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVK  172 (193)
T ss_pred             -------ec-----------------------cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHH
Confidence                   01                       578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCC
Q psy15725        333 QLFRRVAAALPGMDSTE  349 (355)
Q Consensus       333 ~l~~~l~~~i~~~~~~~  349 (355)
                      ++|+.++..|-+....+
T Consensus       173 ~~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  173 QVFERLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999987765544

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=1.7e-28  Score=203.85  Aligned_cols=171  Identities=32%  Similarity=0.541  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+.|+..+.+...                       +.||++..+ ...+.+++..+.+.+|||+
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~-----------------------~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~   57 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTD-----------------------YIPTVFDNF-SANVSVDGNTVNLGLWDTA   57 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCC-----------------------CCCcceeee-EEEEEECCEEEEEEEEECC
Confidence            6999999999999999999999665444                       445555444 3456677888999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      |+++|..+++.+++++|++|+|||+++++||+++ ..|+.+++...                                  
T Consensus        58 G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~----------------------------------  103 (176)
T cd04133          58 GQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA----------------------------------  103 (176)
T ss_pred             CCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC----------------------------------
Confidence            9999999999999999999999999999999998 68999886431                                  


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                              .++|+++||||+|+.+.+..                                                    
T Consensus       104 --------~~~piilvgnK~Dl~~~~~~----------------------------------------------------  123 (176)
T cd04133         104 --------PNVPIVLVGTKLDLRDDKQY----------------------------------------------------  123 (176)
T ss_pred             --------CCCCEEEEEeChhhccChhh----------------------------------------------------
Confidence                    36899999999997431100                                                    


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV  331 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv  331 (355)
                                       .         .                +....+.+..+++..+++..++ ++++|||++|.||
T Consensus       124 -----------------~---------~----------------~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV  161 (176)
T cd04133         124 -----------------L---------A----------------DHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV  161 (176)
T ss_pred             -----------------h---------h----------------hccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence                             0         0                0011245667778888888887 6999999999999


Q ss_pred             HHHHHHHHHHcCC
Q psy15725        332 KQLFRRVAAALPG  344 (355)
Q Consensus       332 ~~l~~~l~~~i~~  344 (355)
                      +++|+.+++.+..
T Consensus       162 ~~~F~~~~~~~~~  174 (176)
T cd04133         162 KAVFDAAIKVVLQ  174 (176)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999997643

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=2.5e-28  Score=206.41  Aligned_cols=177  Identities=28%  Similarity=0.509  Sum_probs=138.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+.|+..+.+...|                       .||++..+ ...+.++++.+.+.+||
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~i~D   57 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEY-----------------------IPTVFDNY-SAQTAVDGRTVSLNLWD   57 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCC-----------------------CCceEeee-EEEEEECCEEEEEEEEE
Confidence            4589999999999999999999996654444                       45555444 33456778889999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |+|+++|..+++.+++++|++|+|||++++.+|+.+. .|+..+...                                 
T Consensus        58 t~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~---------------------------------  104 (191)
T cd01875          58 TAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH---------------------------------  104 (191)
T ss_pred             CCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---------------------------------
Confidence            9999999999999999999999999999999999996 698877532                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                               ..++|+++||||.|+.+.+..                                                  
T Consensus       105 ---------~~~~piilvgNK~DL~~~~~~--------------------------------------------------  125 (191)
T cd01875         105 ---------CPNVPILLVGTKKDLRNDADT--------------------------------------------------  125 (191)
T ss_pred             ---------CCCCCEEEEEeChhhhcChhh--------------------------------------------------
Confidence                     137999999999998431100                                                  


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGY  329 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~  329 (355)
                                               .+.+.                +. ..+.+..+++..+++..+ +++++|||++|.
T Consensus       126 -------------------------~~~~~----------------~~-~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~  163 (191)
T cd01875         126 -------------------------LKKLK----------------EQ-GQAPITPQQGGALAKQIHAVKYLECSALNQD  163 (191)
T ss_pred             -------------------------HHHHh----------------hc-cCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence                                     00000                00 123455667888888888 699999999999


Q ss_pred             CHHHHHHHHHHHcCCCC
Q psy15725        330 NVKQLFRRVAAALPGMD  346 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~  346 (355)
                      ||+++|++|++.+..+.
T Consensus       164 ~v~e~f~~l~~~~~~~~  180 (191)
T cd01875         164 GVKEVFAEAVRAVLNPT  180 (191)
T ss_pred             CHHHHHHHHHHHHhccc
Confidence            99999999999998764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.96  E-value=1.5e-28  Score=204.22  Aligned_cols=166  Identities=31%  Similarity=0.522  Sum_probs=133.8

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|.+|||||||++++..+.+.+.+                       .||++..+ ...+.+++..+.+.+|||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt   57 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYH-----------------------DPTIEDAY-KQQARIDNEPALLDILDT   57 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCc-----------------------CCcccceE-EEEEEECCEEEEEEEEeC
Confidence            489999999999999999999996665544                       44445333 344567788889999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      ||+++|..++..+++.+|++++|||++++.+|+.+..|+..+...+                                  
T Consensus        58 ~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~----------------------------------  103 (172)
T cd04141          58 AGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR----------------------------------  103 (172)
T ss_pred             CCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc----------------------------------
Confidence            9999999999999999999999999999999998887766553210                                  


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       104 --------------------------------------------------------------------------------  103 (172)
T cd04141         104 --------------------------------------------------------------------------------  103 (172)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                    ...++|+++|+||+|+.+.+.+...++..+++..++++++|||++|.||+
T Consensus       104 ------------------------------~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~  153 (172)
T cd04141         104 ------------------------------LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYID  153 (172)
T ss_pred             ------------------------------CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHH
Confidence                                          00356777777777776666677777888888888999999999999999


Q ss_pred             HHHHHHHHHcCCCC
Q psy15725        333 QLFRRVAAALPGMD  346 (355)
Q Consensus       333 ~l~~~l~~~i~~~~  346 (355)
                      ++|++|++.+.+..
T Consensus       154 ~~f~~l~~~~~~~~  167 (172)
T cd04141         154 DAFHGLVREIRRKE  167 (172)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.96  E-value=2.8e-28  Score=210.13  Aligned_cols=178  Identities=25%  Similarity=0.454  Sum_probs=140.7

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ...++||+++|++|||||||+++|..+.|...                       +.||++.++. ..+.+++..+.+.+
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~-----------------------y~pTi~~~~~-~~i~~~~~~v~l~i   65 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPET-----------------------YVPTVFENYT-AGLETEEQRVELSL   65 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCC-----------------------cCCceeeeeE-EEEEECCEEEEEEE
Confidence            34689999999999999999999999555544                       4455555543 34667888899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhh-HHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |||+|++.|..+++.+++++|++++|||++++++|++ +..|+.++....                              
T Consensus        66 wDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~------------------------------  115 (232)
T cd04174          66 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC------------------------------  115 (232)
T ss_pred             EeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC------------------------------
Confidence            9999999999999999999999999999999999998 488999886431                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                  +++|+++||||+|+.....                                                 
T Consensus       116 ------------~~~piilVgNK~DL~~~~~-------------------------------------------------  134 (232)
T cd04174         116 ------------PSTRILLIGCKTDLRTDLS-------------------------------------------------  134 (232)
T ss_pred             ------------CCCCEEEEEECcccccccc-------------------------------------------------
Confidence                        3689999999999732100                                                 


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKA  327 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~  327 (355)
                                            .    +..+             .   + ...+.+..+++..+++..++ +|++|||++
T Consensus       135 ----------------------~----~~~l-------------~---~-~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt  171 (232)
T cd04174         135 ----------------------T----LMEL-------------S---N-QKQAPISYEQGCALAKQLGAEVYLECSAFT  171 (232)
T ss_pred             ----------------------h----hhhh-------------c---c-ccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence                                  0    0000             0   0 01245777889999999998 799999999


Q ss_pred             CC-CHHHHHHHHHHHcCCC
Q psy15725        328 GY-NVKQLFRRVAAALPGM  345 (355)
Q Consensus       328 ~~-gv~~l~~~l~~~i~~~  345 (355)
                      |. ||+++|+.+++.+.+.
T Consensus       172 g~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         172 SEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            98 8999999999988764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04131 Rnd Rnd subfamily

Probab=99.96  E-value=2.8e-28  Score=203.43  Aligned_cols=173  Identities=26%  Similarity=0.499  Sum_probs=137.0

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ++||+++|++|||||||+++|..+.++..|                       .||++..+ ...+.+++..+.+.+|||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~iwDt   56 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETY-----------------------VPTVFENY-TASFEIDEQRIELSLWDT   56 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCc-----------------------CCceEEEE-EEEEEECCEEEEEEEEEC
Confidence            589999999999999999999996655544                       45555444 345667888899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +|++.|..+++.+++++|++++|||+++++||+++ ..|+.+++...                                 
T Consensus        57 ~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~---------------------------------  103 (178)
T cd04131          57 SGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC---------------------------------  103 (178)
T ss_pred             CCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC---------------------------------
Confidence            99999999999999999999999999999999995 78999886531                                 


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                               +++|+++||||+|+.+..    .                                                
T Consensus       104 ---------~~~~iilVgnK~DL~~~~----~------------------------------------------------  122 (178)
T cd04131         104 ---------PNTKVLLVGCKTDLRTDL----S------------------------------------------------  122 (178)
T ss_pred             ---------CCCCEEEEEEChhhhcCh----h------------------------------------------------
Confidence                     368999999999973210    0                                                


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g  330 (355)
                                         .    ...+..                . ..+.+..+++.++++..++ ++++|||++|.|
T Consensus       123 -------------------~----~~~~~~----------------~-~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~  162 (178)
T cd04131         123 -------------------T----LMELSH----------------Q-RQAPVSYEQGCAIAKQLGAEIYLECSAFTSEK  162 (178)
T ss_pred             -------------------H----HHHHHh----------------c-CCCCCCHHHHHHHHHHhCCCEEEECccCcCCc
Confidence                               0    000111                0 1245777888999999997 899999999995


Q ss_pred             -HHHHHHHHHHHcC
Q psy15725        331 -VKQLFRRVAAALP  343 (355)
Q Consensus       331 -v~~l~~~l~~~i~  343 (355)
                       |+++|..+++...
T Consensus       163 ~v~~~F~~~~~~~~  176 (178)
T cd04131         163 SVRDIFHVATMACL  176 (178)
T ss_pred             CHHHHHHHHHHHHh
Confidence             9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0087|consensus

Probab=99.96  E-value=7.2e-29  Score=201.00  Aligned_cols=157  Identities=39%  Similarity=0.742  Sum_probs=145.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      -.-+||+++|+++||||-|+.||..                       +.|.-...+|+|.++.++.+.++++.+..+||
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftr-----------------------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIW   68 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTR-----------------------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIW   68 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcc-----------------------cccCcccccceeEEEEeeceeecCcEEEEeee
Confidence            4569999999999999999999999                       55666678899999999999999999999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||+||++|+.+...+++++-++++|||++++.+|+++..|+.+++.+                                 
T Consensus        69 DTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdh---------------------------------  115 (222)
T KOG0087|consen   69 DTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDH---------------------------------  115 (222)
T ss_pred             cccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhc---------------------------------
Confidence            99999999999999999999999999999999999999999999764                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                              ...++++++||||+|+.+.+.+..+++..++...+..+.++|+..+.|++..+
T Consensus       116 --------ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen  116 --------ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             --------CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence                    34599999999999999999999999999999999999999999988887543

>cd04122 Rab14 Rab14 subfamily

Probab=99.96  E-value=4.1e-28  Score=200.65  Aligned_cols=100  Identities=38%  Similarity=0.766  Sum_probs=84.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++++..+.+...                       +.+|++.++....+.+++..+.+.+|||
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt   58 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD-----------------------CPHTIGVEFGTRIIEVNGQKIKLQIWDT   58 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------CCcccceeEEEEEEEECCEEEEEEEEEC
Confidence            47999999999999999999998554433                       4456666777777777888889999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||+++|...+..+++++|++++|||++++++|+.+..|+..+.
T Consensus        59 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~  101 (166)
T cd04122          59 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR  101 (166)
T ss_pred             CCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888876653

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0086|consensus

Probab=99.96  E-value=1.7e-29  Score=193.11  Aligned_cols=157  Identities=41%  Similarity=0.727  Sum_probs=145.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      -+|++++|++|+|||||+++|..                       ..|.+...-|+|++|..+.+.+.++.+++++|||
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie-----------------------~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDT   65 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIE-----------------------NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDT   65 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHH-----------------------hhhcccccceeeeeecceeeeecCcEEEEEEeec
Confidence            47999999999999999999999                       5556666778999999999999999999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      .|+++|+.....+++++-++++|||++++++|+.+..|+..++...++                                
T Consensus        66 AGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~--------------------------------  113 (214)
T KOG0086|consen   66 AGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASP--------------------------------  113 (214)
T ss_pred             ccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCC--------------------------------
Confidence            999999999999999999999999999999999999999999876544                                


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEE
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQ  233 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~  233 (355)
                               ++.++++|||.|+.+++.++.++...++.+....+.++|+.+|.|+++.++.
T Consensus       114 ---------nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~  165 (214)
T KOG0086|consen  114 ---------NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  165 (214)
T ss_pred             ---------cEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence                     7889999999999999999999999999999999999999999999976543

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=1.2e-27  Score=196.89  Aligned_cols=160  Identities=40%  Similarity=0.696  Sum_probs=131.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++++.+.+.+                       .+.+|++.++....+.+++..+.+.+||++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~   57 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHS-----------------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTA   57 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCC
Confidence            589999999999999999999855443                       345666777777777777878899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++.+..++..+++.+|++++|||++++++|+.+..|++.+...                                    
T Consensus        58 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~------------------------------------  101 (161)
T cd04117          58 GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY------------------------------------  101 (161)
T ss_pred             CcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence            99999988888999999999999999998998888887665321                                    


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (161)
T cd04117         102 --------------------------------------------------------------------------------  101 (161)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                                                   ...+.|+++|+||.|+...+.+..+++..+++..++++++|||++|.||++
T Consensus       102 -----------------------------~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  152 (161)
T cd04117         102 -----------------------------APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKE  152 (161)
T ss_pred             -----------------------------CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence                                         113467777777777766666777788888888889999999999999999


Q ss_pred             HHHHHHHH
Q psy15725        334 LFRRVAAA  341 (355)
Q Consensus       334 l~~~l~~~  341 (355)
                      +|++|++.
T Consensus       153 ~f~~l~~~  160 (161)
T cd04117         153 SFTRLTEL  160 (161)
T ss_pred             HHHHHHhh
Confidence            99999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=5.7e-28  Score=204.04  Aligned_cols=174  Identities=32%  Similarity=0.521  Sum_probs=135.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||++++..+.+...                       +.||++..+ .+.+.+++..+.+.+|
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~l~i~   58 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDE-----------------------YDPTIEDSY-RKQCVIDEETCLLDIL   58 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcC-----------------------cCCchhhEE-EEEEEECCEEEEEEEE
Confidence            3569999999999999999999999655443                       344555444 4566678888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||+++|..++..+++.+|++++|||++++++|+.+..|+..+....                                
T Consensus        59 Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~--------------------------------  106 (189)
T PTZ00369         59 DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVK--------------------------------  106 (189)
T ss_pred             eCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--------------------------------
Confidence            999999999999999999999999999999999998888876653210                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                              ..                                                                      
T Consensus       107 --------~~----------------------------------------------------------------------  108 (189)
T PTZ00369        107 --------DK----------------------------------------------------------------------  108 (189)
T ss_pred             --------CC----------------------------------------------------------------------
Confidence                    00                                                                      


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                        .+.|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|
T Consensus       109 ----------------------------------~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~g  154 (189)
T PTZ00369        109 ----------------------------------DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVN  154 (189)
T ss_pred             ----------------------------------CCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCC
Confidence                                              3466777777777655555555566666777778999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCC
Q psy15725        331 VKQLFRRVAAALPGMDSTENKP  352 (355)
Q Consensus       331 v~~l~~~l~~~i~~~~~~~~~~  352 (355)
                      |+++|++|++.+.+..++.+++
T Consensus       155 i~~~~~~l~~~l~~~~~~~~~~  176 (189)
T PTZ00369        155 VDEAFYELVREIRKYLKEDMPS  176 (189)
T ss_pred             HHHHHHHHHHHHHHHhhccchh
Confidence            9999999998887765544433

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.7e-27  Score=205.35  Aligned_cols=104  Identities=29%  Similarity=0.627  Sum_probs=90.0

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++++.+.+                       ...+.+|++.++....+..++..+.+.+
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f-----------------------~~~~~~tig~~~~~~~~~~~~~~~~l~i   66 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-----------------------EKKYEPTIGVEVHPLDFFTNCGKIRFYC   66 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCC-----------------------CCccCCccceeEEEEEEEECCeEEEEEE
Confidence            37789999999999999999999998544                       4445667777877777777777899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      |||+|++.|..++..+++.+|++|+|||++++.+|+.+..|+..+..
T Consensus        67 ~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~  113 (219)
T PLN03071         67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR  113 (219)
T ss_pred             EECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999889887753

>cd01865 Rab3 Rab3 subfamily

Probab=99.96  E-value=1.7e-27  Score=196.73  Aligned_cols=163  Identities=43%  Similarity=0.756  Sum_probs=131.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++.++.+.                       ..+.+|++.++....+..++..+.+.+|||+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~   58 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFT-----------------------SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTA   58 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCceeeEEEEEEEEECCEEEEEEEEECC
Confidence            79999999999999999999995543                       3445566666666666667778899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++++..++..+++.+|++++|||++++++|+.+..|++.+...                                    
T Consensus        59 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~------------------------------------  102 (165)
T cd01865          59 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY------------------------------------  102 (165)
T ss_pred             ChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence            99999989999999999999999999988888888887665311                                    


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (165)
T cd01865         103 --------------------------------------------------------------------------------  102 (165)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                                                   ...+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.||++
T Consensus       103 -----------------------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  153 (165)
T cd01865         103 -----------------------------SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQ  153 (165)
T ss_pred             -----------------------------CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence                                         013467777778887765555666666777777788999999999999999


Q ss_pred             HHHHHHHHcCC
Q psy15725        334 LFRRVAAALPG  344 (355)
Q Consensus       334 l~~~l~~~i~~  344 (355)
                      +|++|++.+.+
T Consensus       154 l~~~l~~~~~~  164 (165)
T cd01865         154 VFERLVDIICD  164 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=1.7e-27  Score=197.20  Aligned_cols=101  Identities=43%  Similarity=0.856  Sum_probs=83.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||++++.+..+                       ...+.+|.+.++....+..++..+.+.+||
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D   58 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSF-----------------------NPSFISTIGIDFKIRTIELDGKKIKLQIWD   58 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcC-----------------------CcccccCccceEEEEEEEECCEEEEEEEEe
Confidence            358999999999999999999999554                       444456667677666777778788999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||++.+...+..+++++|++++|||++++++|+.+..|+..+.
T Consensus        59 ~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~  102 (167)
T cd01867          59 TAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIE  102 (167)
T ss_pred             CCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence            99999988888888888899999988888888888777766653

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=2.1e-27  Score=195.62  Aligned_cols=98  Identities=32%  Similarity=0.551  Sum_probs=81.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++..+.+...+                       .||++ +.....+.+++....+.+||||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~l~i~Dt~   57 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY-----------------------DPTIE-DSYRKQIEVDGQQCMLEILDTA   57 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc-----------------------CCchh-hhEEEEEEECCEEEEEEEEECC
Confidence            79999999999999999999986654443                       34444 3344556677778899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |+++|..++..+++++|++++|||++++.+|+.+..|...+.
T Consensus        58 G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~   99 (163)
T cd04136          58 GTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQIL   99 (163)
T ss_pred             CccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988888877664

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04127 Rab27A Rab27a subfamily

Probab=99.95  E-value=1.6e-27  Score=199.73  Aligned_cols=166  Identities=37%  Similarity=0.632  Sum_probs=131.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec----------
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE----------   81 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------   81 (355)
                      +.+||+++|++|||||||++++..+.+.+.                       +.+|++.++....+.+.          
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~~   59 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPK-----------------------FITTVGIDFREKRVVYNSSGPGGTLGR   59 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCcc-----------------------CCCccceEEEEEEEEEcCccccccccC
Confidence            468999999999999999999999655444                       44555555554444433          


Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccc
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH  161 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
                      +..+.+.+|||||+++|..++..+++++|++++|||++++++|..+..|+..+.....                      
T Consensus        60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----------------------  117 (180)
T cd04127          60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY----------------------  117 (180)
T ss_pred             CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC----------------------
Confidence            4568899999999999999999999999999999999999999998888777642100                      


Q ss_pred             cCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcc
Q psy15725        162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQE  241 (355)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~  241 (355)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (180)
T cd04127         118 --------------------------------------------------------------------------------  117 (180)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEE
Q psy15725        242 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI  321 (355)
Q Consensus       242 ~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  321 (355)
                                                                ..+.|+++|+||+|+.+.+.+...+...+++..+++++
T Consensus       118 ------------------------------------------~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  155 (180)
T cd04127         118 ------------------------------------------CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF  155 (180)
T ss_pred             ------------------------------------------CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence                                                      02456777777777765556666677778888889999


Q ss_pred             EecCCCCCCHHHHHHHHHHHcCC
Q psy15725        322 ETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       322 ~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      ++||++|.|++++|++|.+.+.+
T Consensus       156 e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         156 ETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987753

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0088|consensus

Probab=99.95  E-value=2.5e-28  Score=187.78  Aligned_cols=183  Identities=38%  Similarity=0.647  Sum_probs=156.8

Q ss_pred             CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725          1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL   80 (355)
Q Consensus         1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~   80 (355)
                      |........+.-.+||+++|...||||+|+-|+..++|..                       .--.|+...|..+.+.+
T Consensus         1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~-----------------------kHlsTlQASF~~kk~n~   57 (218)
T KOG0088|consen    1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNC-----------------------KHLSTLQASFQNKKVNV   57 (218)
T ss_pred             CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcch-----------------------hhHHHHHHHHhhccccc
Confidence            4555566678889999999999999999999999855433                       33456666788888888


Q ss_pred             cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      .+....++||||.|+++|..+-+-||++++++++|||++|++||+.++.|..+++...                      
T Consensus        58 ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml----------------------  115 (218)
T KOG0088|consen   58 EDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML----------------------  115 (218)
T ss_pred             ccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh----------------------
Confidence            8888999999999999999999999999999999999999999999999988876421                      


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ  240 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~  240 (355)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (218)
T KOG0088|consen  116 --------------------------------------------------------------------------------  115 (218)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725        241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF  320 (355)
Q Consensus       241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  320 (355)
                                                                 ...+.+++|+||+||..+++++.+++..+++..|.-|
T Consensus       116 -------------------------------------------Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y  152 (218)
T KOG0088|consen  116 -------------------------------------------GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALY  152 (218)
T ss_pred             -------------------------------------------CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhh
Confidence                                                       0245678899999998889999999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHHHHcCCCCCCCCC
Q psy15725        321 IETSAKAGYNVKQLFRRVAAALPGMDSTENK  351 (355)
Q Consensus       321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~  351 (355)
                      +++||+.+.||.++|+.|.+.+.....+..+
T Consensus       153 ~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr  183 (218)
T KOG0088|consen  153 METSAKDNVGISELFESLTAKMIEHSSQRQR  183 (218)
T ss_pred             eecccccccCHHHHHHHHHHHHHHHhhhccc
Confidence            9999999999999999999999877655443

>KOG0079|consensus

Probab=99.95  E-value=6e-29  Score=189.08  Aligned_cols=155  Identities=41%  Similarity=0.737  Sum_probs=142.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +-++.+|+|++|||||+|+-+|..                       ++|...|.-|+|.++..+.+.+++..+.++|||
T Consensus         7 hLfkllIigDsgVGKssLl~rF~d-----------------------dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwD   63 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFAD-----------------------DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWD   63 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhh-----------------------cccccceEEEeeeeEEEEEeecCCcEEEEEEee
Confidence            346889999999999999999998                       555666777889999999999999999999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      ++|+++|+.+...++++..++++|||+++.+||.+...|+++++..                                  
T Consensus        64 tAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n----------------------------------  109 (198)
T KOG0079|consen   64 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN----------------------------------  109 (198)
T ss_pred             cccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc----------------------------------
Confidence            9999999999999999999999999999999999999999999854                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                              .+.+|-++||||.|.+..+.+..++...++...++.++++|++...|++.++
T Consensus       110 --------cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF  161 (198)
T KOG0079|consen  110 --------CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF  161 (198)
T ss_pred             --------CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence                    2479999999999999989999999999999999999999999988887654

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.95  E-value=4e-27  Score=196.20  Aligned_cols=172  Identities=27%  Similarity=0.498  Sum_probs=133.4

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||+++|..+.|...|                       .||++..+. ..+.+++..+.+.+|||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~-----------------------~pt~~~~~~-~~~~~~~~~~~l~i~Dt   56 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY-----------------------VPTVFDNYA-VTVMIGGEPYTLGLFDT   56 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------------CCceeeeeE-EEEEECCEEEEEEEEEC
Confidence            479999999999999999999996655544                       444454443 34556777889999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +|+++|..++..+++.+|++++|||++++++|+.+. .|+.++...                                  
T Consensus        57 ~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~----------------------------------  102 (175)
T cd01874          57 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH----------------------------------  102 (175)
T ss_pred             CCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh----------------------------------
Confidence            999999999999999999999999999999999986 598887542                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                              ..++|+++|+||+|+.+...                                                    
T Consensus       103 --------~~~~piilvgnK~Dl~~~~~----------------------------------------------------  122 (175)
T cd01874         103 --------CPKTPFLLVGTQIDLRDDPS----------------------------------------------------  122 (175)
T ss_pred             --------CCCCCEEEEEECHhhhhChh----------------------------------------------------
Confidence                    13689999999999732100                                                    


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~g  330 (355)
                                             ..+.+                 .....+.+..+++..+++..+ +.+++|||++|.|
T Consensus       123 -----------------------~~~~l-----------------~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~  162 (175)
T cd01874         123 -----------------------TIEKL-----------------AKNKQKPITPETGEKLARDLKAVKYVECSALTQKG  162 (175)
T ss_pred             -----------------------hHHHh-----------------hhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCC
Confidence                                   00001                 111124566777788887776 6999999999999


Q ss_pred             HHHHHHHHHHHc
Q psy15725        331 VKQLFRRVAAAL  342 (355)
Q Consensus       331 v~~l~~~l~~~i  342 (355)
                      |+++|+.+++..
T Consensus       163 v~~~f~~~~~~~  174 (175)
T cd01874         163 LKNVFDEAILAA  174 (175)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04110 Rab35 Rab35 subfamily

Probab=99.95  E-value=5e-27  Score=199.81  Aligned_cols=168  Identities=38%  Similarity=0.696  Sum_probs=134.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||+++|.+..+.                       ..+.+|++.++....+..++..+.+.+||
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D   61 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-----------------------GSYITTIGVDFKIRTVEINGERVKLQIWD   61 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCcCccccceeEEEEEEECCEEEEEEEEe
Confidence            4699999999999999999999985543                       33456667777777777778788999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +||++.+..++..+++.+|++++|||++++++|+.+..|++.+...                                  
T Consensus        62 ~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~----------------------------------  107 (199)
T cd04110          62 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN----------------------------------  107 (199)
T ss_pred             CCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------------------
Confidence            9999999999999999999999999999999998888887765321                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (199)
T cd04110         108 --------------------------------------------------------------------------------  107 (199)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     . ...|+++|+||+|+.....+...+...+++..+++++++||++|.||
T Consensus       108 -------------------------------~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi  155 (199)
T cd04110         108 -------------------------------C-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINV  155 (199)
T ss_pred             -------------------------------C-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCH
Confidence                                           0 12466677777776555555556666677777889999999999999


Q ss_pred             HHHHHHHHHHcCCCCCC
Q psy15725        332 KQLFRRVAAALPGMDST  348 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~~~  348 (355)
                      +++|++|.+.+....+.
T Consensus       156 ~~lf~~l~~~~~~~~~~  172 (199)
T cd04110         156 EEMFNCITELVLRAKKD  172 (199)
T ss_pred             HHHHHHHHHHHHHhhhc
Confidence            99999999998865433

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04109 Rab28 Rab28 subfamily

Probab=99.95  E-value=4.4e-27  Score=202.58  Aligned_cols=167  Identities=39%  Similarity=0.620  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecC-cEEEEEEEec
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDT   92 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~   92 (355)
                      +||+++|++|||||||+++|.++.                       +...+.||++.++....+.+++ ..+.+.+|||
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~-----------------------~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt   57 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEG-----------------------FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDI   57 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCC-----------------------CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEEC
Confidence            589999999999999999999844                       4445566778888777777764 5789999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      +|++.+..++..+++.+|++++|||++++++|+++..|+..+.....                                 
T Consensus        58 ~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~---------------------------------  104 (215)
T cd04109          58 GGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLK---------------------------------  104 (215)
T ss_pred             CCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc---------------------------------
Confidence            99999999999999999999999999999999999889887753200                                 


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (215)
T cd04109         105 --------------------------------------------------------------------------------  104 (215)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                   ....+.|+++|+||+|+...+.+..++...+++..+++++++||++|.||+
T Consensus       105 -----------------------------~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~  155 (215)
T cd04109         105 -----------------------------SSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVN  155 (215)
T ss_pred             -----------------------------ccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence                                         000356788888888887667777778888888888999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy15725        333 QLFRRVAAALPGM  345 (355)
Q Consensus       333 ~l~~~l~~~i~~~  345 (355)
                      ++|++|++.+.+.
T Consensus       156 ~lf~~l~~~l~~~  168 (215)
T cd04109         156 LLFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.95  E-value=4.5e-27  Score=194.40  Aligned_cols=100  Identities=42%  Similarity=0.895  Sum_probs=84.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++++.++.+.                       ..+.+|.+.++....+..++..+.+.+||+
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   58 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYT-----------------------ESYISTIGVDFKIRTIELDGKTIKLQIWDT   58 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCccceeEEEEEEEECCEEEEEEEEEC
Confidence            489999999999999999999985443                       344556677777777777788889999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||++.+..++..+++.+|++++|||++++++|..+..|+..+.
T Consensus        59 ~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~  101 (166)
T cd01869          59 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEID  101 (166)
T ss_pred             CCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence            9999998888888999999999999999888888888877664

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04125 RabA_like RabA-like subfamily

Probab=99.95  E-value=4.4e-27  Score=198.50  Aligned_cols=171  Identities=38%  Similarity=0.650  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++|.++.+.                       ..+.+|.+.++....+.+++..+.+.+||++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~   57 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFS-----------------------ESTKSTIGVDFKIKTVYIENKIIKLQIWDTN   57 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCceeeEEEEEEEEECCEEEEEEEEECC
Confidence            58999999999999999999985543                       3345566667766777777888899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++.+..++..+++.+|++++|||++++++|..+..|+.++....                                   
T Consensus        58 g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-----------------------------------  102 (188)
T cd04125          58 GQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-----------------------------------  102 (188)
T ss_pred             CcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----------------------------------
Confidence            999998889899999999999999999999988888877764310                                   


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (188)
T cd04125         103 --------------------------------------------------------------------------------  102 (188)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                                                    ..+.|+++++||.|+.+.+.+...++..+++..+++++++||++|.||++
T Consensus       103 ------------------------------~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~  152 (188)
T cd04125         103 ------------------------------RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEE  152 (188)
T ss_pred             ------------------------------CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence                                          01356666666666655555666666777777788999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCC
Q psy15725        334 LFRRVAAALPGMDSTENKP  352 (355)
Q Consensus       334 l~~~l~~~i~~~~~~~~~~  352 (355)
                      +|++|++.+.+...+....
T Consensus       153 ~f~~l~~~~~~~~~~~~~~  171 (188)
T cd04125         153 AFILLVKLIIKRLEEQELS  171 (188)
T ss_pred             HHHHHHHHHHHHhhcCcCC
Confidence            9999999998766555443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.95  E-value=4.2e-27  Score=223.61  Aligned_cols=252  Identities=21%  Similarity=0.219  Sum_probs=154.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||+|+|++......                     . ..+++..+.......++  ...+.+|||||
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v---------------------~-~~~g~t~d~~~~~~~~~--~~~~~liDTpG   56 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV---------------------S-DTPGVTRDRKYGDAEWG--GREFILIDTGG   56 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee---------------------c-CCCCcccCceEEEEEEC--CeEEEEEECCC
Confidence            589999999999999999998542110                     0 01111122222333333  34699999999


Q ss_pred             cc--------cccccccccccCccEEEEEEECCCcchhhh--HHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725         95 QE--------RFRSLIPSYIRDSTVAVVVYDITNANSFHQ--TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS  164 (355)
Q Consensus        95 ~~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
                      ..        .+......+++.+|++++|+|+.+..+...  +..|+.+                               
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-------------------------------  105 (429)
T TIGR03594        57 IEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK-------------------------------  105 (429)
T ss_pred             CCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-------------------------------
Confidence            63        344455667889999999999988544432  3334332                               


Q ss_pred             cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeecccc----------------
Q psy15725        165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV----------------  227 (355)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v----------------  227 (355)
                                      .+.|+++|+||+|.........    ++ ...+. .++.+|+..+.++                
T Consensus       106 ----------------~~~piilVvNK~D~~~~~~~~~----~~-~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~  164 (429)
T TIGR03594       106 ----------------SGKPVILVANKIDGKKEDAVAA----EF-YSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEE  164 (429)
T ss_pred             ----------------hCCCEEEEEECccCCcccccHH----HH-HhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccc
Confidence                            2689999999999754221000    00 01111 1222222222111                


Q ss_pred             -----------------------------------------------------ceEEEEEEeCCCcccccccc-------
Q psy15725        228 -----------------------------------------------------KQVRLQLWDTAGQERFRSLI-------  247 (355)
Q Consensus       228 -----------------------------------------------------~~i~~~i~D~~g~~~~~~~~-------  247 (355)
                                                                           +...+.++||+|........       
T Consensus       165 ~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~  244 (429)
T TIGR03594       165 EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS  244 (429)
T ss_pred             cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH
Confidence                                                                 11246789999965443322       


Q ss_pred             ----cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh----cCcE
Q psy15725        248 ----PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE----LNVM  319 (355)
Q Consensus       248 ----~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----~~~~  319 (355)
                          ..++..+|++++|+|++++.+.++. .+...+..   .++|+++|+||+|+.+...........+...    .+++
T Consensus       245 ~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  320 (429)
T TIGR03594       245 VLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAP  320 (429)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCc
Confidence                2357889999999999988776654 23333333   5799999999999862111111111111111    2479


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        320 FIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       320 ~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      ++++||++|.|++++|+++.+......
T Consensus       321 vi~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       321 IVFISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             eEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999998776443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.95  E-value=6.3e-27  Score=200.76  Aligned_cols=177  Identities=23%  Similarity=0.472  Sum_probs=137.3

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ++||+|||++|||||||+++|..+.|+..|                       .||++.++. ..+.+++..+.+.+|||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y-----------------------~pTi~~~~~-~~~~~~~~~v~L~iwDt   56 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSY-----------------------VPTVFENYT-ASFEIDKRRIELNMWDT   56 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCcc-----------------------CCccccceE-EEEEECCEEEEEEEEeC
Confidence            489999999999999999999996655554                       445454443 45667888899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +|++.|..+++.+++.+|++++|||++++++|+.+ ..|..++...                                  
T Consensus        57 ~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~----------------------------------  102 (222)
T cd04173          57 SGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF----------------------------------  102 (222)
T ss_pred             CCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh----------------------------------
Confidence            99999999999999999999999999999999998 5688766432                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                              ..++|++|||||+|+.++..                                                    
T Consensus       103 --------~~~~piiLVgnK~DL~~~~~----------------------------------------------------  122 (222)
T cd04173         103 --------CPNAKVVLVGCKLDMRTDLA----------------------------------------------------  122 (222)
T ss_pred             --------CCCCCEEEEEECcccccchh----------------------------------------------------
Confidence                    24799999999999743100                                                    


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g  330 (355)
                                             ....+...                 ....+..+++..+++..++ +|++|||+++.|
T Consensus       123 -----------------------~~~~~~~~-----------------~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~  162 (222)
T cd04173         123 -----------------------TLRELSKQ-----------------RLIPVTHEQGTVLAKQVGAVSYVECSSRSSER  162 (222)
T ss_pred             -----------------------hhhhhhhc-----------------cCCccCHHHHHHHHHHcCCCEEEEcCCCcCCc
Confidence                                   00000000                 0123667788889999885 999999999985


Q ss_pred             -HHHHHHHHHHHcCCCCC
Q psy15725        331 -VKQLFRRVAAALPGMDS  347 (355)
Q Consensus       331 -v~~l~~~l~~~i~~~~~  347 (355)
                       |+++|+...+....++.
T Consensus       163 ~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         163 SVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CHHHHHHHHHHHHHhccC
Confidence             99999999997776543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=6.8e-27  Score=197.77  Aligned_cols=172  Identities=45%  Similarity=0.749  Sum_probs=133.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++..+.+..                      +.+.+|++.++....+.+++..+.+.+||||
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~   58 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLN----------------------GNFIATVGIDFRNKVVTVDGVKVKLQIWDTA   58 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCc----------------------cCcCCcccceeEEEEEEECCEEEEEEEEeCC
Confidence            589999999999999999999855421                      2345566667776677788888999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++++...+..+++.+|++++|||++++++|+++..|+..+...                                    
T Consensus        59 G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~------------------------------------  102 (191)
T cd04112          59 GQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEY------------------------------------  102 (191)
T ss_pred             CcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence            99988888888888888888888888888888777776655321                                    


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (191)
T cd04112         103 --------------------------------------------------------------------------------  102 (191)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                                                   ...++|+++|+||.|+..++.+...+...+++..+++++++||++|.|+++
T Consensus       103 -----------------------------~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~  153 (191)
T cd04112         103 -----------------------------AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVEL  153 (191)
T ss_pred             -----------------------------CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence                                         113456667777777655555555666667777788999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCC
Q psy15725        334 LFRRVAAALPGMDSTENKP  352 (355)
Q Consensus       334 l~~~l~~~i~~~~~~~~~~  352 (355)
                      +|++|.+.+...+.+....
T Consensus       154 l~~~l~~~~~~~~~~~~~~  172 (191)
T cd04112         154 AFTAVAKELKHRKYEQPDE  172 (191)
T ss_pred             HHHHHHHHHHHhccccCCC
Confidence            9999999998886554433

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.95  E-value=8e-27  Score=192.98  Aligned_cols=167  Identities=28%  Similarity=0.569  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++.++.+..                       .+.+|++.++....+..++..+.+++|||+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~   57 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVS-----------------------KYLPTIGIDYGVKKVSVRNKEVRVNFFDLS   57 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------CCCCccceeEEEEEEEECCeEEEEEEEECC
Confidence            589999999999999999999955433                       455666777777777788888999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++.+..++..+++.+|++|+|||++++.+|+.+..|+.++......                                 
T Consensus        58 G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~---------------------------------  104 (168)
T cd04119          58 GHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGP---------------------------------  104 (168)
T ss_pred             ccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccc---------------------------------
Confidence            99999999999999999999999999999999999998887542100                                 


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                            .                                                         
T Consensus       105 ----------------------~---------------------------------------------------------  105 (168)
T cd04119         105 ----------------------H---------------------------------------------------------  105 (168)
T ss_pred             ----------------------c---------------------------------------------------------
Confidence                                  0                                                         


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                       .                           ...+.|+++|+||+|+.+++.+...+...+++..+++++++||++|.||++
T Consensus       106 -~---------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  157 (168)
T cd04119         106 -G---------------------------NMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNE  157 (168)
T ss_pred             -c---------------------------cCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence             0                           014688999999999865566667777777777789999999999999999


Q ss_pred             HHHHHHHHcC
Q psy15725        334 LFRRVAAALP  343 (355)
Q Consensus       334 l~~~l~~~i~  343 (355)
                      +|++|.+.+.
T Consensus       158 l~~~l~~~l~  167 (168)
T cd04119         158 MFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=5.9e-27  Score=196.24  Aligned_cols=100  Identities=27%  Similarity=0.682  Sum_probs=89.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|+.|||||||++||..+.+                       ...+.||++.++..+.+.+++..+.+.+|||+
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-----------------------~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~   57 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEF-----------------------DEDYIQTLGVNFMEKTISIRGTEITFSIWDLG   57 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-----------------------CCCCCCccceEEEEEEEEECCEEEEEEEEeCC
Confidence            5899999999999999999999544                       44456677888887888888888999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      |++.|..++..+++++|++++|||++++++|+++..|+.++..
T Consensus        58 G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~  100 (182)
T cd04128          58 GQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARG  100 (182)
T ss_pred             CchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988764

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04134 Rho3 Rho3 subfamily

Probab=99.95  E-value=1e-26  Score=196.29  Aligned_cols=181  Identities=29%  Similarity=0.515  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      .||+++|++|||||||+++|..+.+...+.                       ||++..+. ..+..++..+.+.+|||+
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~-----------------------~t~~~~~~-~~i~~~~~~~~l~i~Dt~   56 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYE-----------------------PTVFENYV-HDIFVDGLHIELSLWDTA   56 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccC-----------------------CcceeeeE-EEEEECCEEEEEEEEECC
Confidence            389999999999999999999966655444                       44444433 344566777899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      |++.|..++..+++.+|++++|||++++++|+.+. .|+..+...                                   
T Consensus        57 G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~-----------------------------------  101 (189)
T cd04134          57 GQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH-----------------------------------  101 (189)
T ss_pred             CChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence            99999999999999999999999999999999886 598887642                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                             ..++|+++|+||+|+...+...                                                   
T Consensus       102 -------~~~~piilvgNK~Dl~~~~~~~---------------------------------------------------  123 (189)
T cd04134         102 -------CPGVKLVLVALKCDLREARNER---------------------------------------------------  123 (189)
T ss_pred             -------CCCCCEEEEEEChhhccChhhH---------------------------------------------------
Confidence                   1378999999999984321000                                                   


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCCH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNV  331 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~gv  331 (355)
                                        .      .+..                 .....+..+++..+++..+ +++++|||++|.||
T Consensus       124 ------------------~------~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  162 (189)
T cd04134         124 ------------------D------DLQR-----------------YGKHTISYEEGLAVAKRINALRYLECSAKLNRGV  162 (189)
T ss_pred             ------------------H------HHhh-----------------ccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCH
Confidence                              0      0000                 0012234455566666666 69999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCC
Q psy15725        332 KQLFRRVAAALPGMDSTENKP  352 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~~~~~~~  352 (355)
                      +++|++|++.+...+..+..+
T Consensus       163 ~e~f~~l~~~~~~~~~~~~~~  183 (189)
T cd04134         163 NEAFTEAARVALNVRPPHPHS  183 (189)
T ss_pred             HHHHHHHHHHHhcccccCcCC
Confidence            999999999998776655443

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=99.95  E-value=7e-27  Score=192.87  Aligned_cols=98  Identities=30%  Similarity=0.544  Sum_probs=81.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|.+|||||||++++..+.+...+                       .+|++..+ ...+.+++..+.+.+||||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~   57 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKY-----------------------DPTIEDSY-RKQVEVDGQQCMLEILDTA   57 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCccc-----------------------CCcchheE-EEEEEECCEEEEEEEEECC
Confidence            79999999999999999999986554443                       34444333 3456667778899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++.|..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        58 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~   99 (164)
T cd04175          58 GTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL   99 (164)
T ss_pred             CcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988888877664

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PLN03110 Rab GTPase; Provisional

Probab=99.95  E-value=1e-26  Score=200.16  Aligned_cols=168  Identities=36%  Similarity=0.689  Sum_probs=138.0

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ....+||+++|++|||||||+++|.+..+                       ...+.+|++.++....+.+++..+.+.+
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~-----------------------~~~~~~t~g~~~~~~~v~~~~~~~~l~l   65 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEF-----------------------CLESKSTIGVEFATRTLQVEGKTVKAQI   65 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCC-----------------------CCCCCCceeEEEEEEEEEECCEEEEEEE
Confidence            44679999999999999999999998543                       3345567788888888888888899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||++|+++|..++..+++.++++++|||++++.+|+.+..|+..+...                                
T Consensus        66 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~--------------------------------  113 (216)
T PLN03110         66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH--------------------------------  113 (216)
T ss_pred             EECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHh--------------------------------
Confidence            999999999999999999999999999999998998888887765421                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       114 --------------------------------------------------------------------------------  113 (216)
T PLN03110        114 --------------------------------------------------------------------------------  113 (216)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                       ...+.|+++|+||+|+...+.+..+++..+++..+++++++||++|.
T Consensus       114 ---------------------------------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~  160 (216)
T PLN03110        114 ---------------------------------ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEAT  160 (216)
T ss_pred             ---------------------------------CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence                                             00246777777777766556666667777777788999999999999


Q ss_pred             CHHHHHHHHHHHcCCC
Q psy15725        330 NVKQLFRRVAAALPGM  345 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~  345 (355)
                      ||+++|++|++.+...
T Consensus       161 ~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        161 NVEKAFQTILLEIYHI  176 (216)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988653

>cd04176 Rap2 Rap2 subgroup

Probab=99.95  E-value=1.1e-26  Score=191.39  Aligned_cols=99  Identities=32%  Similarity=0.587  Sum_probs=82.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ++||+++|.+|||||||++++..+.+.+.+                       .+|++ ++....+.+++....+.+|||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~l~i~Dt   56 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKY-----------------------DPTIE-DFYRKEIEVDSSPSVLEILDT   56 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------------CCchh-heEEEEEEECCEEEEEEEEEC
Confidence            479999999999999999999996554443                       34443 444556667777888999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +|+++|..++..+++++|++++|||++++.+|+++..|+..+.
T Consensus        57 ~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~   99 (163)
T cd04176          57 AGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIV   99 (163)
T ss_pred             CCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888876664

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=9.9e-27  Score=199.47  Aligned_cols=166  Identities=40%  Similarity=0.733  Sum_probs=132.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEEEe
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWD   91 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D   91 (355)
                      ++||+++|++|||||||+++|+++.+...                       +.+|++.++....+.+ ++..+.+++||
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-----------------------~~~ti~~d~~~~~i~~~~~~~~~l~i~D   58 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-----------------------SDPTVGVDFFSRLIEIEPGVRIKLQLWD   58 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------CCceeceEEEEEEEEECCCCEEEEEEEe
Confidence            58999999999999999999998554443                       3456677777666665 45678999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |+|++.+..++..+++.+|++++|||++++++|+++..|+.++.....                                
T Consensus        59 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~--------------------------------  106 (211)
T cd04111          59 TAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ--------------------------------  106 (211)
T ss_pred             CCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--------------------------------
Confidence            999999999999999999999999999999999988888776642100                                


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                              .                                                                       
T Consensus       107 --------~-----------------------------------------------------------------------  107 (211)
T cd04111         107 --------P-----------------------------------------------------------------------  107 (211)
T ss_pred             --------C-----------------------------------------------------------------------
Confidence                    0                                                                       


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                       ...|+++|+||.|+.+.+.+...+...+++..+++++++||++|.||
T Consensus       108 ---------------------------------~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v  154 (211)
T cd04111         108 ---------------------------------HRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNV  154 (211)
T ss_pred             ---------------------------------CCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCH
Confidence                                             23556666666666555556666677777778899999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q psy15725        332 KQLFRRVAAALPGM  345 (355)
Q Consensus       332 ~~l~~~l~~~i~~~  345 (355)
                      +++|++|++.+...
T Consensus       155 ~e~f~~l~~~~~~~  168 (211)
T cd04111         155 EEAFELLTQEIYER  168 (211)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988755

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.95  E-value=1.2e-26  Score=190.95  Aligned_cols=159  Identities=39%  Similarity=0.708  Sum_probs=129.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec--CcEEEEEEEe
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWD   91 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D   91 (355)
                      +||+++|++|||||||++++.++.+.                       ..+.+|++.++....+.+.  +..+.+++||
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D   57 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFT-----------------------KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWD   57 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCcEEEEEEEEEEEEcCCCCEEEEEEee
Confidence            58999999999999999999985543                       3345566667766666666  6778999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||+++|..++..+++.+|++++|||++++++|+.+..|+..+...                                  
T Consensus        58 ~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~----------------------------------  103 (162)
T cd04106          58 TAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE----------------------------------  103 (162)
T ss_pred             CCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------------------
Confidence            9999999999999999999999999999998998888887665310                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       104 --------------------------------------------------------------------------------  103 (162)
T cd04106         104 --------------------------------------------------------------------------------  103 (162)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     . .++|+++|+||.|+...+.+..+++..+++..+++++++||++|.|+
T Consensus       104 -------------------------------~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v  151 (162)
T cd04106         104 -------------------------------C-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNV  151 (162)
T ss_pred             -------------------------------C-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence                                           0 35677777777777655666667777788888899999999999999


Q ss_pred             HHHHHHHHHH
Q psy15725        332 KQLFRRVAAA  341 (355)
Q Consensus       332 ~~l~~~l~~~  341 (355)
                      +++|++|...
T Consensus       152 ~~l~~~l~~~  161 (162)
T cd04106         152 TELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.95  E-value=1.9e-26  Score=191.30  Aligned_cols=99  Identities=42%  Similarity=0.807  Sum_probs=86.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||++|+..+.+                       ...+.||++.++....+.+++....+++|||||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G   58 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVF-----------------------DKNYKATIGVDFEMERFEILGVPFSLQLWDTAG   58 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC-----------------------CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCC
Confidence            899999999999999999999554                       444556667777777777888888999999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      +++|..++..+++.+|++++|||++++++|+.+..|+.++.+
T Consensus        59 ~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~  100 (170)
T cd04108          59 QERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK  100 (170)
T ss_pred             hHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999889887653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04144 Ras2 Ras2 subfamily

Probab=99.95  E-value=1.1e-26  Score=196.29  Aligned_cols=169  Identities=36%  Similarity=0.563  Sum_probs=133.9

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|.+|||||||+++|..+.+...+                       .+|++..+ .....+++..+.+.+|||+|
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G   56 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETY-----------------------DPTIEDSY-RKQVVVDGQPCMLEVLDTAG   56 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccC-----------------------CCchHhhE-EEEEEECCEEEEEEEEECCC
Confidence            5899999999999999999986554443                       34444333 33455677778899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      +++|..++..+++.+|++++|||++++++|+.+..|+..+.....                                   
T Consensus        57 ~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-----------------------------------  101 (190)
T cd04144          57 QEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKD-----------------------------------  101 (190)
T ss_pred             chhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-----------------------------------
Confidence            999999999999999999999999999999999888877643200                                   


Q ss_pred             ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS  254 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~  254 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (190)
T cd04144         102 --------------------------------------------------------------------------------  101 (190)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725        255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l  334 (355)
                                                 ....++|+++|+||+|+...+.+...++..+++..+++++++||++|.||+++
T Consensus       102 ---------------------------~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  154 (190)
T cd04144         102 ---------------------------ESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERA  154 (190)
T ss_pred             ---------------------------ccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence                                       00035788888888888666667767777777778899999999999999999


Q ss_pred             HHHHHHHcCCCCCCC
Q psy15725        335 FRRVAAALPGMDSTE  349 (355)
Q Consensus       335 ~~~l~~~i~~~~~~~  349 (355)
                      |+++++.+...+...
T Consensus       155 ~~~l~~~l~~~~~~~  169 (190)
T cd04144         155 FYTLVRALRQQRQGG  169 (190)
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999877554443

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=2.2e-26  Score=190.16  Aligned_cols=99  Identities=30%  Similarity=0.673  Sum_probs=82.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++++.+.+.                       ..+.+|++.++....+..+++.+.+.+|||+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~   57 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFE-----------------------KKYVATLGVEVHPLDFHTNRGKIRFNVWDTA   57 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC-----------------------CCCCCceeeEEEEEEEEECCEEEEEEEEECC
Confidence            58999999999999999999985443                       3345666777777777777788999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++.+..++..+++.+|++++|||++++++|+.+..|+..+.
T Consensus        58 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~   99 (166)
T cd00877          58 GQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLV   99 (166)
T ss_pred             CChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999998888888889999999999988888888877877764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01868 Rab11_like Rab11-like

Probab=99.95  E-value=2.3e-26  Score=189.94  Aligned_cols=100  Identities=37%  Similarity=0.860  Sum_probs=83.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++++.++.+                       ...+.|+.+.++....+..++....+.+||+
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~   59 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEF-----------------------NLDSKSTIGVEFATRSIQIDGKTIKAQIWDT   59 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCC-----------------------CCCCCCccceEEEEEEEEECCEEEEEEEEeC
Confidence            58999999999999999999998544                       3334566677777777778888889999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||++++..++..+++.++++++|||++++.+|+.+..|+..+.
T Consensus        60 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  102 (165)
T cd01868          60 AGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELR  102 (165)
T ss_pred             CChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            9999988888888889999999999998888888877776654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=2.6e-26  Score=188.98  Aligned_cols=161  Identities=43%  Similarity=0.763  Sum_probs=138.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||+++|.++.+                       ...+.+|++.+.....+..++..+.+.+||++|
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g   57 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEF-----------------------PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSG   57 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSST-----------------------TSSSETTSSEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcc-----------------------ccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999544                       444566778888889999999999999999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      ++.|..++..+++++|++|+|||+++++||+.+..|++.+...                                     
T Consensus        58 ~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~-------------------------------------  100 (162)
T PF00071_consen   58 QERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKY-------------------------------------  100 (162)
T ss_dssp             SGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH-------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-------------------------------------
Confidence            9999888888899999999999999998888888887776532                                     


Q ss_pred             ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS  254 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~  254 (355)
                                                                                                      
T Consensus       101 --------------------------------------------------------------------------------  100 (162)
T PF00071_consen  101 --------------------------------------------------------------------------------  100 (162)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725        255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l  334 (355)
                                                  ...+.|+++++||.|+.+.+.+..+++..+++.++.+++++||+++.||.++
T Consensus       101 ----------------------------~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  152 (162)
T PF00071_consen  101 ----------------------------KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEI  152 (162)
T ss_dssp             ----------------------------STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHH
T ss_pred             ----------------------------ccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHH
Confidence                                        1125677777777777666788888899999999999999999999999999


Q ss_pred             HHHHHHHcC
Q psy15725        335 FRRVAAALP  343 (355)
Q Consensus       335 ~~~l~~~i~  343 (355)
                      |..+++.+.
T Consensus       153 f~~~i~~i~  161 (162)
T PF00071_consen  153 FQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=2.2e-26  Score=191.54  Aligned_cols=170  Identities=29%  Similarity=0.531  Sum_probs=132.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+.++..+.+...|.|                       |++ +.....+.++++.+.+.+|||+
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~-----------------------t~~-~~~~~~~~~~~~~~~l~i~Dt~   57 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-----------------------TVF-DNYSANVMVDGKPVNLGLWDTA   57 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCC-----------------------cce-eeeEEEEEECCEEEEEEEEECC
Confidence            7999999999999999999999666555444                       433 3334445677888999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      |++.|..++..+++.+|++|+|||++++++|+.+. .|+..+...                                   
T Consensus        58 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-----------------------------------  102 (174)
T cd01871          58 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-----------------------------------  102 (174)
T ss_pred             CchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence            99999999999999999999999999999999985 688877532                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                             ..++|+++|+||+|+.+.+.                                                     
T Consensus       103 -------~~~~piilvgnK~Dl~~~~~-----------------------------------------------------  122 (174)
T cd01871         103 -------CPNTPIILVGTKLDLRDDKD-----------------------------------------------------  122 (174)
T ss_pred             -------CCCCCEEEEeeChhhccChh-----------------------------------------------------
Confidence                   13789999999999742110                                                     


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV  331 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv  331 (355)
                                     +.       +.+..                 ...+.+..+++..+++..+. ++++|||++|.||
T Consensus       123 ---------------~~-------~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i  163 (174)
T cd01871         123 ---------------TI-------EKLKE-----------------KKLTPITYPQGLAMAKEIGAVKYLECSALTQKGL  163 (174)
T ss_pred             ---------------hH-------HHHhh-----------------ccCCCCCHHHHHHHHHHcCCcEEEEecccccCCH
Confidence                           00       00000                 01245667888888888884 9999999999999


Q ss_pred             HHHHHHHHHH
Q psy15725        332 KQLFRRVAAA  341 (355)
Q Consensus       332 ~~l~~~l~~~  341 (355)
                      +++|+.+++.
T Consensus       164 ~~~f~~l~~~  173 (174)
T cd01871         164 KTVFDEAIRA  173 (174)
T ss_pred             HHHHHHHHHh
Confidence            9999999875

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.95  E-value=2.5e-26  Score=189.45  Aligned_cols=100  Identities=29%  Similarity=0.510  Sum_probs=80.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++++.+..+..                       .+.++.+.. ......+++..+.+.+||
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~-----------------------~~~~t~~~~-~~~~~~~~~~~~~~~i~D   56 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVT-----------------------DYDPTIEDS-YTKQCEIDGQWAILDILD   56 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCc-----------------------ccCCCccce-EEEEEEECCEEEEEEEEE
Confidence            46899999999999999999999854433                       334444433 334455777788999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||++++..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        57 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~  100 (164)
T cd04145          57 TAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQIL  100 (164)
T ss_pred             CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888888876654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=3.1e-26  Score=189.78  Aligned_cols=101  Identities=38%  Similarity=0.777  Sum_probs=83.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||++++.+..+...                       +.++.+.++....+..++....+.+||
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D   59 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------HDLTIGVEFGARMITIDGKQIKLQIWD   59 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------CCCccceeEEEEEEEECCEEEEEEEEE
Confidence            358999999999999999999998554333                       345556777777777888888999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +||++++..++..+++.+|++++|||++++.+|+.+..|+.+++
T Consensus        60 t~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~  103 (168)
T cd01866          60 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR  103 (168)
T ss_pred             CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            99999888888888888899999999888888888888877664

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=3.6e-26  Score=193.10  Aligned_cols=182  Identities=26%  Similarity=0.354  Sum_probs=128.9

Q ss_pred             eeEEEEEcCCCCChhHHHH-HhhhcCCCCCceeeeecccceeeecccCCCCCccccccce-eeeee--------eeeecC
Q psy15725         13 KFKLVFLGEQSVGKTSLIT-RFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI-DFLSK--------TMYLED   82 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~--------~~~~~~   82 (355)
                      .+||+++|++|||||||+. ++.++.+..                  ..+...+.||++. +....        ...+++
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~------------------~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~   63 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQ------------------YQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG   63 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCccc------------------ccCccccCCceecccceeEEeeeccccceeeCC
Confidence            4899999999999999996 555432211                  2234445566642 22211        125678


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccc
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH  161 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
                      ..+.+++|||+|++.  ..+..+++++|++++|||++++.||+++. .|+.+++..                        
T Consensus        64 ~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~------------------------  117 (195)
T cd01873          64 VSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF------------------------  117 (195)
T ss_pred             EEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh------------------------
Confidence            889999999999875  35667899999999999999999999996 599888643                        


Q ss_pred             cCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcc
Q psy15725        162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQE  241 (355)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~  241 (355)
                                        ..++|+++||||+|+.+......                         ..            
T Consensus       118 ------------------~~~~piilvgNK~DL~~~~~~~~-------------------------~~------------  142 (195)
T cd01873         118 ------------------CPRVPVILVGCKLDLRYADLDEV-------------------------NR------------  142 (195)
T ss_pred             ------------------CCCCCEEEEEEchhccccccchh-------------------------hh------------
Confidence                              13689999999999843110000                         00            


Q ss_pred             cccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEE
Q psy15725        242 RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFI  321 (355)
Q Consensus       242 ~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~  321 (355)
                                                                 ...|   +.+..  ...+.+..+++..+++..+++|+
T Consensus       143 -------------------------------------------~~~~---~~~~~--~~~~~V~~~e~~~~a~~~~~~~~  174 (195)
T cd01873         143 -------------------------------------------ARRP---LARPI--KNADILPPETGRAVAKELGIPYY  174 (195)
T ss_pred             -------------------------------------------cccc---ccccc--ccCCccCHHHHHHHHHHhCCEEE
Confidence                                                       0000   00000  11356778888999999999999


Q ss_pred             EecCCCCCCHHHHHHHHHHH
Q psy15725        322 ETSAKAGYNVKQLFRRVAAA  341 (355)
Q Consensus       322 ~~SA~~~~gv~~l~~~l~~~  341 (355)
                      +|||++|.||+++|+.+++.
T Consensus       175 E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         175 ETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             EcCCCCCCCHHHHHHHHHHh
Confidence            99999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04113 Rab4 Rab4 subfamily

Probab=99.95  E-value=3.2e-26  Score=188.27  Aligned_cols=161  Identities=43%  Similarity=0.755  Sum_probs=130.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++++++.+...                       +.++.+.++....+.+++..+.+.+||+|
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~   57 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKED-----------------------SQHTIGVEFGSKIIRVGGKRVKLQIWDTA   57 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------CCCceeeeEEEEEEEECCEEEEEEEEECc
Confidence            5899999999999999999999554433                       34555666666677777778899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++.|...+..+++.+|++++|||++++.+|.++..|+.+++..                                    
T Consensus        58 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~------------------------------------  101 (161)
T cd04113          58 GQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARAL------------------------------------  101 (161)
T ss_pred             chHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence            99999888888889999999999999988888887776665321                                    


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (161)
T cd04113         102 --------------------------------------------------------------------------------  101 (161)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                                                   ...++|+++++||+|+...+.+...+...+++..+++++++||+++.|+++
T Consensus       102 -----------------------------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  152 (161)
T cd04113         102 -----------------------------ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEE  152 (161)
T ss_pred             -----------------------------CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence                                         013567777777777765566667777778888889999999999999999


Q ss_pred             HHHHHHHHc
Q psy15725        334 LFRRVAAAL  342 (355)
Q Consensus       334 l~~~l~~~i  342 (355)
                      +|+++++.+
T Consensus       153 ~~~~~~~~~  161 (161)
T cd04113         153 AFLKCARSI  161 (161)
T ss_pred             HHHHHHHhC
Confidence            999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01864 Rab19 Rab19 subfamily

Probab=99.95  E-value=3.8e-26  Score=188.66  Aligned_cols=101  Identities=44%  Similarity=0.836  Sum_probs=83.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++++..+.+                       ...+.++.+.++....+.+++..+.+.+||
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D   58 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTF-----------------------SERQGNTIGVDFTMKTLEIEGKRVKLQIWD   58 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC-----------------------cccCCCccceEEEEEEEEECCEEEEEEEEE
Confidence            468999999999999999999998544                       333445666666667777777778999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||++.|...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        59 ~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~  102 (165)
T cd01864          59 TAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVE  102 (165)
T ss_pred             CCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence            99999988888888888999999999998888888877877664

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04124 RabL2 RabL2 subfamily

Probab=99.95  E-value=3.8e-26  Score=187.90  Aligned_cols=99  Identities=31%  Similarity=0.727  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++..+.+.+.                       +.++.+.++......+++..+.+.+|||+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~   57 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQ-----------------------QLSTYALTLYKHNAKFEGKTILVDFWDTA   57 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------cCCceeeEEEEEEEEECCEEEEEEEEeCC
Confidence            5899999999999999999999665443                       33444555666666677888899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++.|..++..+++.+|++++|||++++.+|+++..|+..++
T Consensus        58 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~   99 (161)
T cd04124          58 GQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELR   99 (161)
T ss_pred             CchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888888877664

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.94  E-value=4.8e-26  Score=189.03  Aligned_cols=163  Identities=40%  Similarity=0.680  Sum_probs=132.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||+++++.+.                       +...+.++++.++....+.+++..+.+.+|||
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~-----------------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt   58 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGR-----------------------FPERTEATIGVDFRERTVEIDGERIKVQLWDT   58 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC-----------------------CCCccccceeEEEEEEEEEECCeEEEEEEEeC
Confidence            5899999999999999999999844                       34445566777777788888888899999999


Q ss_pred             CCccccc-ccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +|+++|. .++..+++.+|++++|||++++.+|+.+..|+..+....                                 
T Consensus        59 ~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------------------------------  105 (170)
T cd04115          59 AGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS---------------------------------  105 (170)
T ss_pred             CChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc---------------------------------
Confidence            9998886 467778888999999999999888888888877664210                                 


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                             .                                                                        
T Consensus       106 -------~------------------------------------------------------------------------  106 (170)
T cd04115         106 -------L------------------------------------------------------------------------  106 (170)
T ss_pred             -------C------------------------------------------------------------------------
Confidence                   0                                                                        


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC---C
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA---G  328 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~---~  328 (355)
                                                      ..++|+++|+||.|+...+.+..+++..+++..+++++++||++   +
T Consensus       107 --------------------------------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~  154 (170)
T cd04115         107 --------------------------------PNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSEN  154 (170)
T ss_pred             --------------------------------CCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCC
Confidence                                            03567777777777766666777777778887789999999999   9


Q ss_pred             CCHHHHHHHHHHHc
Q psy15725        329 YNVKQLFRRVAAAL  342 (355)
Q Consensus       329 ~gv~~l~~~l~~~i  342 (355)
                      .||+++|..+++.+
T Consensus       155 ~~i~~~f~~l~~~~  168 (170)
T cd04115         155 DHVEAIFMTLAHKL  168 (170)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.94  E-value=5.3e-26  Score=186.90  Aligned_cols=99  Identities=27%  Similarity=0.536  Sum_probs=80.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ++||+++|++|||||||++++.++.+...+.                       ||.+.. ....+.+++..+.+.+|||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~-----------------------~t~~~~-~~~~~~~~~~~~~~~i~Dt   56 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-----------------------PTIEDS-YRKQVVIDGETCLLDILDT   56 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcC-----------------------Ccchhe-EEEEEEECCEEEEEEEEEC
Confidence            3799999999999999999999966544443                       343322 2444566777788999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +|+++|..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        57 ~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~   99 (162)
T cd04138          57 AGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIK   99 (162)
T ss_pred             CCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999989988887776654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.94  E-value=4.4e-26  Score=188.05  Aligned_cols=98  Identities=34%  Similarity=0.591  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++.+..+...+.|+                       .+ +........++..+.+.+||||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t-----------------------~~-~~~~~~~~~~~~~~~l~i~Dt~   56 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPT-----------------------IE-DSYRKQIEIDGEVCLLDILDTA   56 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCc-----------------------hh-hhEEEEEEECCEEEEEEEEECC
Confidence            58999999999999999999996665554433                       22 2234455566778899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++++..++..+++.+|++++|||++++++|+.+..|+..+.
T Consensus        57 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~   98 (164)
T smart00173       57 GQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQIL   98 (164)
T ss_pred             CcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888876653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=3.5e-26  Score=193.60  Aligned_cols=95  Identities=27%  Similarity=0.631  Sum_probs=83.8

Q ss_pred             EcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCcccc
Q psy15725         19 LGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   98 (355)
Q Consensus        19 vG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   98 (355)
                      +|++|||||||+++++.+.                       +...+.+|++.++....+.++++.+.+.+|||+|+++|
T Consensus         1 vG~~~vGKTsLi~r~~~~~-----------------------f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~   57 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGE-----------------------FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF   57 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCC-----------------------CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh
Confidence            6999999999999999844                       44445677788888888888888999999999999999


Q ss_pred             cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         99 RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        99 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      ..++..+++++|++|+|||++++.+|+.+..|+.++..
T Consensus        58 ~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~   95 (200)
T smart00176       58 GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR   95 (200)
T ss_pred             hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999889888753

Ran is involved in the active transport of proteins through nuclear pores.

>cd04116 Rab9 Rab9 subfamily

Probab=99.94  E-value=7.4e-26  Score=187.87  Aligned_cols=102  Identities=37%  Similarity=0.736  Sum_probs=87.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...+||+++|++|||||||+++++.+.+.+.                       +.++++.++....+.+++..+.+.+|
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~l~i~   59 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-----------------------LFHTIGVEFLNKDLEVDGHFVTLQIW   59 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcC-----------------------cCCceeeEEEEEEEEECCeEEEEEEE
Confidence            4679999999999999999999998554433                       44566677777777788888999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |+||++++..++..+++.+|++++|||++++++|+.+..|+.++.
T Consensus        60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  104 (170)
T cd04116          60 DTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFI  104 (170)
T ss_pred             eCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence            999999999999999999999999999999999999988887764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0081|consensus

Probab=99.94  E-value=3.6e-28  Score=187.10  Aligned_cols=167  Identities=34%  Similarity=0.586  Sum_probs=143.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec---------Cc
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE---------DR   83 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------~~   83 (355)
                      -+|.+.+|++||||||++.+.+.                       +.+......|+|++|-.+.+.++         +.
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD-----------------------~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~   65 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTD-----------------------GKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQ   65 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecC-----------------------CcccceeEEEeecccccceEEEeccCCCCCCcce
Confidence            46889999999999999999888                       44555566777888887777553         34


Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      .+.+++|||+|+++|+.+.-.+++.+-+++++||+++.+||-++..|+.+++.+.                         
T Consensus        66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA-------------------------  120 (219)
T KOG0081|consen   66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA-------------------------  120 (219)
T ss_pred             EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh-------------------------
Confidence            6889999999999999999999999999999999999999999999998875320                         


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccc
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERF  243 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~  243 (355)
                                                                                                      
T Consensus       121 --------------------------------------------------------------------------------  120 (219)
T KOG0081|consen  121 --------------------------------------------------------------------------------  120 (219)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEe
Q psy15725        244 RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET  323 (355)
Q Consensus       244 ~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  323 (355)
                                     +                       . ++.-|++++||+||.+.+.++..++.+++.++++|||++
T Consensus       121 ---------------Y-----------------------c-E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET  161 (219)
T KOG0081|consen  121 ---------------Y-----------------------C-ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET  161 (219)
T ss_pred             ---------------c-----------------------c-CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence                           0                       0 455699999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        324 SAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       324 SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      ||.+|.||++..+.|+..+.++-
T Consensus       162 SA~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  162 SACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             ccccCcCHHHHHHHHHHHHHHHH
Confidence            99999999999998888877653

>cd04140 ARHI_like ARHI subfamily

Probab=99.94  E-value=6.4e-26  Score=187.31  Aligned_cols=98  Identities=24%  Similarity=0.451  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++++++.+...+.|                       |.+..+ ...+..+.....+.+|||+
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~-----------------------t~~~~~-~~~~~~~~~~~~l~i~Dt~   57 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP-----------------------TIEDTY-RQVISCSKNICTLQITDTT   57 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCC-----------------------cchheE-EEEEEECCEEEEEEEEECC
Confidence            7999999999999999999999665544433                       333222 3344556677889999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |+++|..++..+++.+|++++|||++++++|+.+..|+..++
T Consensus        58 G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~   99 (165)
T cd04140          58 GSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELIC   99 (165)
T ss_pred             CCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999888888899999999999999999988888877664

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0091|consensus

Probab=99.94  E-value=2.9e-27  Score=183.02  Aligned_cols=157  Identities=41%  Similarity=0.741  Sum_probs=139.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEEE
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLW   90 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~   90 (355)
                      ..+++.++|++-||||||++.|+.+++                       .+-.+||+|.+|..+-+.+ ++..+++++|
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkf-----------------------aelsdptvgvdffarlie~~pg~riklqlw   63 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKF-----------------------AELSDPTVGVDFFARLIELRPGYRIKLQLW   63 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcc-----------------------cccCCCccchHHHHHHHhcCCCcEEEEEEe
Confidence            468999999999999999999999554                       4445778899988887766 4678999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||+|+++|+.+...+++++-++++|||.+|++||+.+..|+++......                               
T Consensus        64 dtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q-------------------------------  112 (213)
T KOG0091|consen   64 DTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ-------------------------------  112 (213)
T ss_pred             eccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC-------------------------------
Confidence            9999999999999999999999999999999999999999999875432                               


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                              ...++.+++||.|+|+...|.++.++++.++...+..++++|++++.|+++.
T Consensus       113 --------~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen  113 --------GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             --------CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence                    2347778999999999999999999999999999999999999999998863

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.94  E-value=6.7e-26  Score=215.62  Aligned_cols=252  Identities=21%  Similarity=0.190  Sum_probs=155.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      .+|+++|++|||||||+|+|.+......                     .. .+.+..+.......+++  ..+.+||||
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v---------------------~~-~~~~t~d~~~~~~~~~~--~~~~liDT~   57 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV---------------------AD-TPGVTRDRIYGEAEWLG--REFILIDTG   57 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee---------------------CC-CCCCcccceEEEEEECC--cEEEEEECC
Confidence            4799999999999999999988542110                     00 12222233333344444  679999999


Q ss_pred             Cccc--------ccccccccccCccEEEEEEECCCcchhh--hHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         94 GQER--------FRSLIPSYIRDSTVAVVVYDITNANSFH--QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        94 g~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      |+..        +......++..+|++++|+|+++..+..  .+..|+..                              
T Consensus        58 G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~------------------------------  107 (435)
T PRK00093         58 GIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK------------------------------  107 (435)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------------------------------
Confidence            9876        2223445678999999999998864443  23344332                              


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeecccc---------------
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV---------------  227 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v---------------  227 (355)
                                       .+.|+++|+||+|..+...    ...++ ...+. .++.+|+.++.++               
T Consensus       108 -----------------~~~piilv~NK~D~~~~~~----~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~  165 (435)
T PRK00093        108 -----------------SNKPVILVVNKVDGPDEEA----DAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEELPEEE  165 (435)
T ss_pred             -----------------cCCcEEEEEECccCccchh----hHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccc
Confidence                             1789999999999643110    00000 01111 1222222222221               


Q ss_pred             -----------------------------------------------------ceEEEEEEeCCCcccccc---------
Q psy15725        228 -----------------------------------------------------KQVRLQLWDTAGQERFRS---------  245 (355)
Q Consensus       228 -----------------------------------------------------~~i~~~i~D~~g~~~~~~---------  245 (355)
                                                                           +...+.++||+|......         
T Consensus       166 ~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~  245 (435)
T PRK00093        166 EEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS  245 (435)
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH
Confidence                                                                 122456889999532211         


Q ss_pred             -c-ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHH----hhcCcE
Q psy15725        246 -L-IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA----KELNVM  319 (355)
Q Consensus       246 -~-~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~  319 (355)
                       . ...++..+|++++|+|++++.+.++. .+...+.+   .++|+++++||+|+.+.... .+....+.    ...+++
T Consensus       246 ~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~  320 (435)
T PRK00093        246 VIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAP  320 (435)
T ss_pred             HHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCC
Confidence             1 12356789999999999988776654 23333333   57999999999998633211 11111121    123469


Q ss_pred             EEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        320 FIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       320 ~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      ++++||++|.|++++|+++.+.....+
T Consensus       321 i~~~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        321 IVFISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence            999999999999999999988765443

>cd04126 Rab20 Rab20 subfamily

Probab=99.94  E-value=9.5e-26  Score=193.36  Aligned_cols=113  Identities=34%  Similarity=0.603  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|.+|||||||+++|+.+.+..                        +.+|++.++....    ...+.+.+|||+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~------------------------~~~Tig~~~~~~~----~~~~~l~iwDt~   52 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD------------------------TVSTVGGAFYLKQ----WGPYNISIWDTA   52 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC------------------------CCCccceEEEEEE----eeEEEEEEEeCC
Confidence            589999999999999999999966532                        2345555554333    245789999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++.|..++..+++.+|++|+|||++++++|+.+..|...+...                                    
T Consensus        53 G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~------------------------------------   96 (220)
T cd04126          53 GREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT------------------------------------   96 (220)
T ss_pred             CcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence            99999999999999999999999999999999998877766432                                    


Q ss_pred             cccccCCCccEEEEEeecCCCC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLS  195 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~  195 (355)
                           ...++|+++||||+|+.
T Consensus        97 -----~~~~~piIlVgNK~DL~  113 (220)
T cd04126          97 -----ANEDCLFAVVGNKLDLT  113 (220)
T ss_pred             -----cCCCCcEEEEEECcccc
Confidence                 12368999999999984

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PLN03108 Rab family protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=193.01  Aligned_cols=166  Identities=40%  Similarity=0.727  Sum_probs=133.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||+++++...+..                       .+.+|++.++....+.+++..+.+.+||
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~-----------------------~~~~ti~~~~~~~~i~~~~~~i~l~l~D   61 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------VHDLTIGVEFGARMITIDNKPIKLQIWD   61 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------CCCCCccceEEEEEEEECCEEEEEEEEe
Confidence            46999999999999999999999855433                       3455667777777778888888999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |+|++.+..++..+++.+|++++|||++++.+|+.+..|+..+...                                  
T Consensus        62 t~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~----------------------------------  107 (210)
T PLN03108         62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH----------------------------------  107 (210)
T ss_pred             CCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHh----------------------------------
Confidence            9999998888888888899999999998888888777776554211                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (210)
T PLN03108        108 --------------------------------------------------------------------------------  107 (210)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     ...+.|+++++||+|+...+.+..++...+++..+++++++||+++.||
T Consensus       108 -------------------------------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  156 (210)
T PLN03108        108 -------------------------------ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV  156 (210)
T ss_pred             -------------------------------cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence                                           1135677777777777655666667777788888899999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q psy15725        332 KQLFRRVAAALPGM  345 (355)
Q Consensus       332 ~~l~~~l~~~i~~~  345 (355)
                      +++|+++++.+.+.
T Consensus       157 ~e~f~~l~~~~~~~  170 (210)
T PLN03108        157 EEAFIKTAAKIYKK  170 (210)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888654

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.94  E-value=9.9e-26  Score=190.11  Aligned_cols=98  Identities=30%  Similarity=0.574  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEec
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDT   92 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~   92 (355)
                      +||+|+|++|||||||+++|.++.+...+                       .+|++.++... +... +..+.+.+|||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~-----------------------~~t~~~~~~~~-i~~~~~~~~~l~i~Dt   56 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY-----------------------VPTVFENYVTN-IQGPNGKIIELALWDT   56 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCC-----------------------CCeeeeeeEEE-EEecCCcEEEEEEEEC
Confidence            58999999999999999999996654444                       44445444433 3343 66789999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~  135 (355)
                      ||+++|..+++.+++.+|++++|||++++++|+++. .|+..+.
T Consensus        57 ~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~  100 (187)
T cd04132          57 AGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVN  100 (187)
T ss_pred             CCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            999999999988999999999999999999998875 4766653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.94  E-value=1.2e-25  Score=183.99  Aligned_cols=93  Identities=19%  Similarity=0.381  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+.+++.+.|.+.+.                       |+ +..+ ...+.+++..+.+.+|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~-----------------------~~-~~~~-~~~i~~~~~~~~l~i~D~~   55 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES-----------------------PE-GGRF-KKEVLVDGQSHLLLIRDEG   55 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCC-----------------------CC-ccce-EEEEEECCEEEEEEEEECC
Confidence            589999999999999999999866544432                       22 2233 3456677888889999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      |++.     ..+++.+|++++|||++++.+|+++..|++++..
T Consensus        56 g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~   93 (158)
T cd04103          56 GAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSS   93 (158)
T ss_pred             CCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9964     2456788999999999999999988888887754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.94  E-value=1.7e-25  Score=184.31  Aligned_cols=163  Identities=47%  Similarity=0.808  Sum_probs=130.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++.+..+                       ...+.++++.++....+..++....+.+||+|
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   57 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKF-----------------------SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTA   57 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC-----------------------CCCCCCceeeEEEEEEEEECCEEEEEEEEECC
Confidence            5899999999999999999998544                       33345566667666777777877899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++.+...+..+++.+|++++|||++++.+++.+..|+..+...                                    
T Consensus        58 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~------------------------------------  101 (164)
T smart00175       58 GQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREY------------------------------------  101 (164)
T ss_pred             ChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence            99988888888888999999999998888888877777665321                                    


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (164)
T smart00175      102 --------------------------------------------------------------------------------  101 (164)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                                                   ...++|+++++||+|+.....+..+....+++..+++++++||++|.|+++
T Consensus       102 -----------------------------~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  152 (164)
T smart00175      102 -----------------------------ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEE  152 (164)
T ss_pred             -----------------------------CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence                                         113467777777777655555566666677777789999999999999999


Q ss_pred             HHHHHHHHcCC
Q psy15725        334 LFRRVAAALPG  344 (355)
Q Consensus       334 l~~~l~~~i~~  344 (355)
                      +|++|.+.+.+
T Consensus       153 l~~~i~~~~~~  163 (164)
T smart00175      153 AFEELAREILK  163 (164)
T ss_pred             HHHHHHHHHhh
Confidence            99999998754

Rab GTPases are implicated in vesicle trafficking.

>cd04142 RRP22 RRP22 subfamily

Probab=99.94  E-value=2e-25  Score=189.31  Aligned_cols=98  Identities=24%  Similarity=0.363  Sum_probs=80.5

Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc---CCCceEEEEeeCCCCCCcccCCHHHHHHHH-hhcCcEEEEecCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAK  326 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~~~~~~~~~SA~  326 (355)
                      +..+|++++|||++++.+++.+..|++.+.+..   ..++|+++|+||+|+...+.+..++...++ +..++++++|||+
T Consensus        78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak  157 (198)
T cd04142          78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAK  157 (198)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCC
Confidence            345899999999999999999988988876653   367999999999999766666666665554 3567899999999


Q ss_pred             CCCCHHHHHHHHHHHcCCCCCC
Q psy15725        327 AGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      +|.||+++|+.+++.+..+...
T Consensus       158 ~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         158 YNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             CCCCHHHHHHHHHHHhhccCCC
Confidence            9999999999999988865443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01861 Rab6 Rab6 subfamily

Probab=99.94  E-value=2.1e-25  Score=183.39  Aligned_cols=98  Identities=88%  Similarity=1.341  Sum_probs=80.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++++..+.                       ..+.++.+.++....+..++..+.+.+||||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~   57 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFD-----------------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTA   57 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCC-----------------------ccCCCceeeeEEEEEEEECCEEEEEEEEECC
Confidence            48999999999999999999985543                       3445666777777777778878899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      |+.++...+..+++.+|++++|||++++++|+.+..|+..+
T Consensus        58 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~   98 (161)
T cd01861          58 GQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDV   98 (161)
T ss_pred             CcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            99988888888888888888888888888887777776654

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=2.4e-25  Score=183.58  Aligned_cols=101  Identities=34%  Similarity=0.700  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEec
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDT   92 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~   92 (355)
                      +||+++|++|||||||++++..+.                     ..+...+.+|++.++....+.++ +..+.+.+|||
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~---------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt   59 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNG---------------------AVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDS   59 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC---------------------CCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEEC
Confidence            489999999999999999998631                     12344556677777776666665 56789999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||++.+..++..+++.+|++++|||++++++|..+..|++.+.
T Consensus        60 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  102 (164)
T cd04101          60 AGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVR  102 (164)
T ss_pred             CCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            9999988888888888999999999988888887777776653

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.94  E-value=3.6e-25  Score=182.31  Aligned_cols=101  Identities=49%  Similarity=0.934  Sum_probs=82.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ++||+++|++|||||||+++++++.+..                       ...++.+.++....+.+++..+.+.+||+
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~   57 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSE-----------------------NQESTIGAAFLTQTVNLDDTTVKFEIWDT   57 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CCCCccceeEEEEEEEECCEEEEEEEEeC
Confidence            4799999999999999999999965443                       33455666677777778888899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      ||++++...+..+++.+|++++|||++++++|+....|+..+..
T Consensus        58 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  101 (163)
T cd01860          58 AGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQR  101 (163)
T ss_pred             CchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            99988888888888888888888888888888877777766643

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04118 Rab24 Rab24 subfamily

Probab=99.94  E-value=3.3e-25  Score=187.88  Aligned_cols=100  Identities=41%  Similarity=0.791  Sum_probs=85.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++|+.+.+..                      ..+.+|++.++....+.+++..+.+.+||++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~   58 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLV----------------------GPYQNTIGAAFVAKRMVVGERVVTLGIWDTA   58 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCC----------------------cCcccceeeEEEEEEEEECCEEEEEEEEECC
Confidence            489999999999999999999855432                      2345666777777778888888999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++++..++..+++.+|++++|||++++.+|+.+..|++.++
T Consensus        59 G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~  100 (193)
T cd04118          59 GSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ  100 (193)
T ss_pred             CchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999998888999999999999999999988888887765

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.93  E-value=3.9e-25  Score=184.22  Aligned_cols=171  Identities=29%  Similarity=0.539  Sum_probs=130.8

Q ss_pred             EEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   95 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   95 (355)
                      |+|+|++|||||||++++.++.+...+.|                       ++...+ ...+.+++..+.+.+|||||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~-----------------------~~~~~~-~~~~~~~~~~~~~~i~Dt~G~   56 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP-----------------------TVFENY-SADVEVDGKPVELGLWDTAGQ   56 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------------------cEEeee-eEEEEECCEEEEEEEEECCCC
Confidence            68999999999999999999666554433                       333333 234556777889999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         96 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      +.|..++..+++.+|++++|||++++++|+.+. .|+..+...                                     
T Consensus        57 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~-------------------------------------   99 (174)
T smart00174       57 EDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF-------------------------------------   99 (174)
T ss_pred             cccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------------------------------
Confidence            999999999999999999999999999999985 598888643                                     


Q ss_pred             ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS  254 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~  254 (355)
                           ..++|+++|+||+|+.....                                                       
T Consensus       100 -----~~~~piilv~nK~Dl~~~~~-------------------------------------------------------  119 (174)
T smart00174      100 -----CPNTPIILVGTKLDLREDKS-------------------------------------------------------  119 (174)
T ss_pred             -----CCCCCEEEEecChhhhhChh-------------------------------------------------------
Confidence                 13789999999999732100                                                       


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHH
Q psy15725        255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQ  333 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~  333 (355)
                                      .    .+.+..                 ...+.+..+++..+++..+. ++++|||++|.||++
T Consensus       120 ----------------~----~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  162 (174)
T smart00174      120 ----------------T----LRELSK-----------------QKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVRE  162 (174)
T ss_pred             ----------------h----hhhhhc-----------------ccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHH
Confidence                            0    000000                 01133556677788888886 999999999999999


Q ss_pred             HHHHHHHHcCC
Q psy15725        334 LFRRVAAALPG  344 (355)
Q Consensus       334 l~~~l~~~i~~  344 (355)
                      +|+.+++.+..
T Consensus       163 lf~~l~~~~~~  173 (174)
T smart00174      163 VFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHhcC
Confidence            99999988753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.93  E-value=2.2e-25  Score=222.44  Aligned_cols=260  Identities=21%  Similarity=0.162  Sum_probs=158.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ....+|+++|++|||||||+|+|++......                      ...|++..+  ............+.+|
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv----------------------~~~pGvT~d--~~~~~~~~~~~~~~li  328 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVV----------------------EDTPGVTRD--RVSYDAEWAGTDFKLV  328 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceee----------------------cCCCCeeEE--EEEEEEEECCEEEEEE
Confidence            3457899999999999999999998542110                      011222222  2222222234578999


Q ss_pred             ecCCccc--------ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccccc
Q psy15725         91 DTAGQER--------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA  162 (355)
Q Consensus        91 D~~g~~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
                      ||||.+.        +......++..+|++++|+|+++..... -..|.+.++.                          
T Consensus       329 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~--------------------------  381 (712)
T PRK09518        329 DTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTST-DERIVRMLRR--------------------------  381 (712)
T ss_pred             eCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh--------------------------
Confidence            9999763        2233445678999999999998742221 1234444432                          


Q ss_pred             CccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccce-------------
Q psy15725        163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ-------------  229 (355)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~-------------  229 (355)
                                        .+.|+++|+||+|+.....   .....+....+. .+.+|+.++.++..             
T Consensus       382 ------------------~~~pvIlV~NK~D~~~~~~---~~~~~~~lg~~~-~~~iSA~~g~GI~eLl~~i~~~l~~~~  439 (712)
T PRK09518        382 ------------------AGKPVVLAVNKIDDQASEY---DAAEFWKLGLGE-PYPISAMHGRGVGDLLDEALDSLKVAE  439 (712)
T ss_pred             ------------------cCCCEEEEEECcccccchh---hHHHHHHcCCCC-eEEEECCCCCCchHHHHHHHHhccccc
Confidence                              3789999999999743211   001111111111 12334433333321             


Q ss_pred             ----------------------------------------------------------EEEEEEeCCCcc----------
Q psy15725        230 ----------------------------------------------------------VRLQLWDTAGQE----------  241 (355)
Q Consensus       230 ----------------------------------------------------------i~~~i~D~~g~~----------  241 (355)
                                                                                ..+.+|||+|..          
T Consensus       440 ~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e  519 (712)
T PRK09518        440 KTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAE  519 (712)
T ss_pred             ccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHH
Confidence                                                                      124588999843          


Q ss_pred             cccccc-cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh----c
Q psy15725        242 RFRSLI-PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE----L  316 (355)
Q Consensus       242 ~~~~~~-~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----~  316 (355)
                      .+..+. ...+..+|++++|+|+++..+.++.. +...+..   .++|+++|+||+|+.+.... ......+...    .
T Consensus       520 ~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~~-~~~~~~~~~~l~~~~  594 (712)
T PRK09518        520 YYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFRR-QRLERLWKTEFDRVT  594 (712)
T ss_pred             HHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhHH-HHHHHHHHHhccCCC
Confidence            222221 23467899999999999998877754 3344433   58999999999999643221 1111111111    2


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        317 NVMFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       317 ~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      ..+++++||++|.||+++|+.+.+..+...+.
T Consensus       595 ~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~  626 (712)
T PRK09518        595 WARRVNLSAKTGWHTNRLAPAMQEALESWDQR  626 (712)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence            24789999999999999999999998865443

>PLN03118 Rab family protein; Provisional

Probab=99.93  E-value=5.8e-25  Score=188.93  Aligned_cols=168  Identities=39%  Similarity=0.652  Sum_probs=133.4

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      .-..+||+++|++|||||||+++|++..+.                        .+.++.+.++....+.+++..+.+.+
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~------------------------~~~~t~~~~~~~~~~~~~~~~~~l~l   66 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE------------------------DLAPTIGVDFKIKQLTVGGKRLKLTI   66 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC------------------------CcCCCceeEEEEEEEEECCEEEEEEE
Confidence            345799999999999999999999985432                        23456666776677777777889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |||||+++|..++..+++.+|++++|||++++++|+.+.. |...+...                               
T Consensus        67 ~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~-------------------------------  115 (211)
T PLN03118         67 WDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELY-------------------------------  115 (211)
T ss_pred             EECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-------------------------------
Confidence            9999999999999999999999999999999999988754 54443210                               


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (211)
T PLN03118        116 --------------------------------------------------------------------------------  115 (211)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                      . ...+.|+++|+||.|+...+.+..++...+++..+++++++||++|
T Consensus       116 --------------------------------~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~  162 (211)
T PLN03118        116 --------------------------------S-TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTR  162 (211)
T ss_pred             --------------------------------c-CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence                                            0 0035677777888887655666666677777778889999999999


Q ss_pred             CCHHHHHHHHHHHcCCC
Q psy15725        329 YNVKQLFRRVAAALPGM  345 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~  345 (355)
                      .|++++|++|.+.+...
T Consensus       163 ~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        163 ENVEQCFEELALKIMEV  179 (211)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999888654

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.93  E-value=3.2e-25  Score=193.80  Aligned_cols=98  Identities=28%  Similarity=0.551  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++|+++.+...|                       .||++ ++....+.+++..+.+.+|||+
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y-----------------------~pTi~-d~~~k~~~i~~~~~~l~I~Dt~   56 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQY-----------------------TPTIE-DFHRKLYSIRGEVYQLDILDTS   56 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------------------CCChh-HhEEEEEEECCEEEEEEEEECC
Confidence            58999999999999999999996655444                       34444 4555666777888899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++.|..++..++..+|++|+|||++++++|+.+..|++++.
T Consensus        57 G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~   98 (247)
T cd04143          57 GNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQIL   98 (247)
T ss_pred             CChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence            999999888888999999999999999999999999988875

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04177 RSR1 RSR1 subgroup

Probab=99.93  E-value=5.5e-25  Score=182.28  Aligned_cols=99  Identities=29%  Similarity=0.533  Sum_probs=80.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|.+|||||||++++.++.+...                       +.++++.. ....+..++..+.+.+|||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~-----------------------~~~t~~~~-~~~~~~~~~~~~~~~i~Dt   56 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIES-----------------------YDPTIEDS-YRKQVEIDGRQCDLEILDT   56 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcc-----------------------cCCcchhe-EEEEEEECCEEEEEEEEeC
Confidence            37999999999999999999998554333                       34444433 3455667777789999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||+++|..++..+++.++++++|||++++++|+.+..|...+.
T Consensus        57 ~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~   99 (168)
T cd04177          57 AGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVL   99 (168)
T ss_pred             CCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999989988877766653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01892 Miro2 Miro2 subfamily

Probab=99.93  E-value=3.4e-25  Score=183.59  Aligned_cols=101  Identities=25%  Similarity=0.320  Sum_probs=83.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++||+++.+.                      +..+.||++.++....+.+++....+.+||
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~----------------------~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d   60 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFS----------------------LNAYSPTIKPRYAVNTVEVYGQEKYLILRE   60 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCC----------------------cccCCCccCcceEEEEEEECCeEEEEEEEe
Confidence            5689999999999999999999995543                      034456666666666677778778899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      ++|++.+..++..+++.+|++++|||++++.+|+.+..|++.+
T Consensus        61 ~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~  103 (169)
T cd01892          61 VGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKY  103 (169)
T ss_pred             cCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHh
Confidence            9999999989988899999999999999988888877776543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0095|consensus

Probab=99.93  E-value=1.6e-26  Score=176.09  Aligned_cols=157  Identities=41%  Similarity=0.713  Sum_probs=141.8

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      -+||++||.+|||||||+.||+.+-|++.                       ...|+|.+|.-+.+.+++..+++++|||
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppg-----------------------qgatigvdfmiktvev~gekiklqiwdt   63 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPG-----------------------QGATIGVDFMIKTVEVNGEKIKLQIWDT   63 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCC-----------------------CCceeeeeEEEEEEEECCeEEEEEEeec
Confidence            47999999999999999999999666554                       3457799999999999999999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      .|+++|+.+...+++.+.++|+|||++=.++|+-+..|+.+|+.+..                                 
T Consensus        64 agqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan---------------------------------  110 (213)
T KOG0095|consen   64 AGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN---------------------------------  110 (213)
T ss_pred             cchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh---------------------------------
Confidence            99999999999999999999999999999999999999999987643                                 


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEE
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQ  233 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~  233 (355)
                              .++--|+||||.|+.+.+.++...++.+++....-+.++|++...|++.+++.
T Consensus       111 --------~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~  163 (213)
T KOG0095|consen  111 --------NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD  163 (213)
T ss_pred             --------cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence                    36778999999999999999999999999988888999999998888876543

>cd01863 Rab18 Rab18 subfamily

Probab=99.93  E-value=1.3e-24  Score=178.57  Aligned_cols=99  Identities=42%  Similarity=0.864  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++.+..+..                       ...++.+.++....+.+++..+.+.+||+|
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   57 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDP-----------------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTA   57 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------ccCCcccceEEEEEEEECCEEEEEEEEECC
Confidence            589999999999999999999854433                       344555666666666667777899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++.+..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        58 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~   99 (161)
T cd01863          58 GQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELE   99 (161)
T ss_pred             CchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence            999998888888999999999999999989888877877664

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04148 RGK RGK subfamily

Probab=99.93  E-value=8.1e-25  Score=188.87  Aligned_cols=165  Identities=32%  Similarity=0.446  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      +||+++|++|||||||+++|+.+.+. ..                       +.++.+.++....+.+++....+.+|||
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~-----------------------~~~t~~~~~~~~~i~~~~~~~~l~i~Dt   57 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHA-----------------------YDASGDDDTYERTVSVDGEESTLVVIDH   57 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccC-----------------------cCCCccccceEEEEEECCEEEEEEEEeC
Confidence            58999999999999999999885543 22                       3344444556666777778889999999


Q ss_pred             CCccccccccccccc-CccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFRSLIPSYIR-DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +|++.  .....+++ .+|++++|||++++.+|+.+..|+..+.                                    
T Consensus        58 ~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~------------------------------------   99 (221)
T cd04148          58 WEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLR------------------------------------   99 (221)
T ss_pred             CCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHH------------------------------------
Confidence            99872  23333445 6777777777777777766665554442                                    


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (221)
T cd04148         100 --------------------------------------------------------------------------------   99 (221)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                   ... ..++|+++|+||+|+...+.+..+++..++...+++++++||++|.|
T Consensus       100 -----------------------------~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~g  150 (221)
T cd04148         100 -----------------------------RNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHN  150 (221)
T ss_pred             -----------------------------HhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence                                         211 13678888888888766666666667777777788999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCC
Q psy15725        331 VKQLFRRVAAALPGMDST  348 (355)
Q Consensus       331 v~~l~~~l~~~i~~~~~~  348 (355)
                      |+++|++|++.+...+..
T Consensus       151 v~~l~~~l~~~~~~~~~~  168 (221)
T cd04148         151 VDELLEGIVRQIRLRRDS  168 (221)
T ss_pred             HHHHHHHHHHHHHhhhcc
Confidence            999999999999754433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01862 Rab7 Rab7 subfamily

Probab=99.93  E-value=1.1e-24  Score=181.13  Aligned_cols=99  Identities=46%  Similarity=0.860  Sum_probs=83.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++.+..+...                       ..++++.++....+.+++..+.+.+||+|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~D~~   57 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-----------------------YKATIGADFLTKEVTVDDKLVTLQIWDTA   57 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcC-----------------------cCCccceEEEEEEEEECCEEEEEEEEeCC
Confidence            5899999999999999999999654333                       34555666766777778888899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++.+..++..+++.+|++++|||++++.+|++...|.+.+.
T Consensus        58 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~   99 (172)
T cd01862          58 GQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFL   99 (172)
T ss_pred             ChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988888876653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.93  E-value=6.6e-25  Score=198.99  Aligned_cols=256  Identities=20%  Similarity=0.157  Sum_probs=155.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      ..|++||.||||||||+|||++....-.                 ...+.     +.-+.......+.+  ..|.++||+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-----------------~D~pG-----vTRDr~y~~~~~~~--~~f~lIDTg   59 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-----------------SDTPG-----VTRDRIYGDAEWLG--REFILIDTG   59 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEe-----------------ecCCC-----CccCCccceeEEcC--ceEEEEECC
Confidence            4699999999999999999999653221                 12222     11122223333333  459999999


Q ss_pred             Cccccc---------ccccccccCccEEEEEEECCCcchh--hhHHHHHHHHhhhcCCceEEeecccccccccccccccc
Q psy15725         94 GQERFR---------SLIPSYIRDSTVAVVVYDITNANSF--HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA  162 (355)
Q Consensus        94 g~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
                      |.+...         ......+.+||++|||+|....-+-  +.+..|+..                             
T Consensus        60 Gl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-----------------------------  110 (444)
T COG1160          60 GLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR-----------------------------  110 (444)
T ss_pred             CCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-----------------------------
Confidence            976432         2344557799999999999884443  234445442                             


Q ss_pred             CccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeecc-----------------
Q psy15725        163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-----------------  225 (355)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~-----------------  225 (355)
                                        .+.|+++|+||+|-.....    ...++....-...+.+|+..+.                 
T Consensus       111 ------------------~~kpviLvvNK~D~~~~e~----~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e  168 (444)
T COG1160         111 ------------------SKKPVILVVNKIDNLKAEE----LAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDE  168 (444)
T ss_pred             ------------------cCCCEEEEEEcccCchhhh----hHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcc
Confidence                              2799999999999742110    0000000000011111111111                 


Q ss_pred             --------------------------------------------ccc---------eEEEEEEeCCCc----------cc
Q psy15725        226 --------------------------------------------NVK---------QVRLQLWDTAGQ----------ER  242 (355)
Q Consensus       226 --------------------------------------------~v~---------~i~~~i~D~~g~----------~~  242 (355)
                                                                  ..+         .-.+.++||+|-          +.
T Consensus       169 ~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~  248 (444)
T COG1160         169 EEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEK  248 (444)
T ss_pred             cccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEE
Confidence                                                        111         113467899882          23


Q ss_pred             cccc-ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHH----hhc-
Q psy15725        243 FRSL-IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA----KEL-  316 (355)
Q Consensus       243 ~~~~-~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~-  316 (355)
                      |.-. .-..+..++.+++|+|.+.+.+-++. .....+.+   .+.++++|.||||+...+....++...-.    ... 
T Consensus       249 ~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~  324 (444)
T COG1160         249 YSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLD  324 (444)
T ss_pred             EeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcccc
Confidence            3322 22446789999999999988775542 23333444   68999999999998765333333332211    222 


Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        317 NVMFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       317 ~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      +.+++++||++|.|++++|+++.+.......+
T Consensus       325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~r  356 (444)
T COG1160         325 FAPIVFISALTGQGLDKLFEAIKEIYECATRR  356 (444)
T ss_pred             CCeEEEEEecCCCChHHHHHHHHHHHHHhccc
Confidence            25999999999999999999998877655443

>cd04123 Rab21 Rab21 subfamily

Probab=99.93  E-value=2.1e-24  Score=177.32  Aligned_cols=99  Identities=44%  Similarity=0.845  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++++..+...                       ..++....+....+...+..+.+.+||+|
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   57 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEK-----------------------HESTTQASFFQKTVNIGGKRIDLAIWDTA   57 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------cCCccceeEEEEEEEECCEEEEEEEEECC
Confidence            5899999999999999999998554333                       33444445555556666777889999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++.+..+++.+++.+|++++|||++++++++.+..|+.+++
T Consensus        58 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~   99 (162)
T cd04123          58 GQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELK   99 (162)
T ss_pred             chHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            998888888777788888888888888777776666655543

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.93  E-value=1.9e-24  Score=179.97  Aligned_cols=99  Identities=37%  Similarity=0.669  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++..+.+...+.|                       |. .+.....+.+++..+.+.+||||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~-----------------------t~-~~~~~~~~~~~~~~~~~~i~Dt~   56 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVP-----------------------TA-FDNFSVVVLVDGKPVRLQLCDTA   56 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------------------ce-eeeeeEEEEECCEEEEEEEEECC
Confidence            5899999999999999999998665555443                       33 24444556677778899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRT  136 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~  136 (355)
                      |++++..++..+++.+|++++|||++++.+|+.+. .|+..+..
T Consensus        57 G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~  100 (173)
T cd04130          57 GQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK  100 (173)
T ss_pred             CChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999874 68887753

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04114 Rab30 Rab30 subfamily

Probab=99.93  E-value=4.9e-24  Score=176.64  Aligned_cols=102  Identities=42%  Similarity=0.761  Sum_probs=81.9

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...+||+++|++|||||||++++..+.+...                       +.++++.++....+.+++..+.+.+|
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~   61 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-----------------------QGATIGVDFMIKTVEIKGEKIKLQIW   61 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------CCCceeeEEEEEEEEECCEEEEEEEE
Confidence            4569999999999999999999998544333                       34555666777777788878899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |+||++.+...+..+++.+|++++|||++++.+|+.+..|+.+++
T Consensus        62 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~  106 (169)
T cd04114          62 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE  106 (169)
T ss_pred             ECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            999998888888888888888888888888877777777766553

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.93  E-value=1.3e-24  Score=179.38  Aligned_cols=162  Identities=35%  Similarity=0.564  Sum_probs=124.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||+++++.+.+.+.+.|                       +....+ .....++++.+.+.+||+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~-----------------------t~~~~~-~~~~~~~~~~~~~~i~D~~g   56 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDP-----------------------NLESLY-SRQVTIDGEQVSLEILDTAG   56 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCC-----------------------ChHHhc-eEEEEECCEEEEEEEEECCC
Confidence            689999999999999999998555444333                       332222 34456677888999999999


Q ss_pred             ccc-ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         95 QER-FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        95 ~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      ++. +...+..+++.+|++++|||++++.+|+.+..|+..+....                                   
T Consensus        57 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----------------------------------  101 (165)
T cd04146          57 QQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIK-----------------------------------  101 (165)
T ss_pred             CcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-----------------------------------
Confidence            985 34556677889999999999999999988888876654210                                   


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (165)
T cd04146         102 --------------------------------------------------------------------------------  101 (165)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC-CHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVK  332 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~-gv~  332 (355)
                                                 . ...++|+++|+||+|+...+.+...++..+++..+++++++||++|. ||+
T Consensus       102 ---------------------------~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~  153 (165)
T cd04146         102 ---------------------------K-RDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVH  153 (165)
T ss_pred             ---------------------------c-CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHH
Confidence                                       0 01367888888888876666677777777888888999999999995 999


Q ss_pred             HHHHHHHHHcC
Q psy15725        333 QLFRRVAAALP  343 (355)
Q Consensus       333 ~l~~~l~~~i~  343 (355)
                      ++|+.|++.+.
T Consensus       154 ~~f~~l~~~~~  164 (165)
T cd04146         154 SVFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0083|consensus

Probab=99.93  E-value=1.1e-26  Score=173.77  Aligned_cols=152  Identities=41%  Similarity=0.772  Sum_probs=137.0

Q ss_pred             EEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCC-CCccccccceeeeeeeeeecCcEEEEEEEecCCc
Q psy15725         17 VFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   95 (355)
Q Consensus        17 ~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   95 (355)
                      +++|++++|||||+-|+..                       +.+ .+...+|+|+++-.+.+..+++.+.+++|||.||
T Consensus         1 mllgds~~gktcllir~kd-----------------------gafl~~~fistvgid~rnkli~~~~~kvklqiwdtagq   57 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKD-----------------------GAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ   57 (192)
T ss_pred             CccccCccCceEEEEEecc-----------------------CceecCceeeeeeeccccceeccCCcEEEEEEeeccch
Confidence            3689999999999988877                       333 3356789999999999999999999999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccc
Q psy15725         96 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDV  175 (355)
Q Consensus        96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (355)
                      ++|+.....+++.+|+.+++||+.++.||++.+.|+.+|..+.                                     
T Consensus        58 erfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~-------------------------------------  100 (192)
T KOG0083|consen   58 ERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA-------------------------------------  100 (192)
T ss_pred             HHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH-------------------------------------
Confidence            9999999999999999999999999999999999999997653                                     


Q ss_pred             cccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEE
Q psy15725        176 RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL  232 (355)
Q Consensus       176 ~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~  232 (355)
                          ...+.+.++|||+|+.+++.+..++++.+++.++.||.++|+++|.|++-.++
T Consensus       101 ----k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~  153 (192)
T KOG0083|consen  101 ----KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFL  153 (192)
T ss_pred             ----HhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHH
Confidence                23678899999999999999999999999999999999999999999885443

>KOG0393|consensus

Probab=99.92  E-value=1.2e-24  Score=178.35  Aligned_cols=179  Identities=31%  Similarity=0.538  Sum_probs=149.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQL   89 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i   89 (355)
                      ...+|+++||+.++|||+|+-.+..+.|+..|.||+                        ++.+...+.+ +++.+.+.+
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTV------------------------Fdnys~~v~V~dg~~v~L~L   57 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTV------------------------FDNYSANVTVDDGKPVELGL   57 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeE------------------------EccceEEEEecCCCEEEEee
Confidence            356899999999999999999999988888888877                        3555566777 499999999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |||.|+++|..+++..+.++|.+++||++.+++||+++ ..|+.+++...                              
T Consensus        58 wDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c------------------------------  107 (198)
T KOG0393|consen   58 WDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC------------------------------  107 (198)
T ss_pred             eecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC------------------------------
Confidence            99999999999999999999999999999999999997 56999998653                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                  +++|+|+||+|.|+.++.                                                  
T Consensus       108 ------------p~vpiiLVGtk~DLr~d~--------------------------------------------------  125 (198)
T KOG0393|consen  108 ------------PNVPIILVGTKADLRDDP--------------------------------------------------  125 (198)
T ss_pred             ------------CCCCEEEEeehHHhhhCH--------------------------------------------------
Confidence                        589999999999984210                                                  


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKA  327 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~  327 (355)
                                               ...+.+...                 ....++.+++.++++..| ..|++|||++
T Consensus       126 -------------------------~~~~~l~~~-----------------~~~~Vt~~~g~~lA~~iga~~y~EcSa~t  163 (198)
T KOG0393|consen  126 -------------------------STLEKLQRQ-----------------GLEPVTYEQGLELAKEIGAVKYLECSALT  163 (198)
T ss_pred             -------------------------HHHHHHHhc-----------------cCCcccHHHHHHHHHHhCcceeeeehhhh
Confidence                                     111122221                 234577889999999999 4899999999


Q ss_pred             CCCHHHHHHHHHHHcCCCCC
Q psy15725        328 GYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~~~  347 (355)
                      ..|+.+.|+..++......+
T Consensus       164 q~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  164 QKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hCCcHHHHHHHHHHHhcccc
Confidence            99999999999999987654

>cd04135 Tc10 TC10 subfamily

Probab=99.92  E-value=5.7e-24  Score=177.17  Aligned_cols=171  Identities=27%  Similarity=0.507  Sum_probs=130.7

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++..+.+...+.|+                       +. +.....+.+++..+.+.+|||+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t-----------------------~~-~~~~~~~~~~~~~~~~~i~Dt~   56 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT-----------------------VF-DHYAVSVTVGGKQYLLGLYDTA   56 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-----------------------ee-eeeEEEEEECCEEEEEEEEeCC
Confidence            58999999999999999999997665554433                       32 2233345567777889999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      |++.|...+..+++.+|++++|||+.++.+|+.+. .|+..+...                                   
T Consensus        57 G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-----------------------------------  101 (174)
T cd04135          57 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-----------------------------------  101 (174)
T ss_pred             CcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-----------------------------------
Confidence            99999999999999999999999999999999885 688777532                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                             ..++|+++|+||+|+.+...                                                     
T Consensus       102 -------~~~~piivv~nK~Dl~~~~~-----------------------------------------------------  121 (174)
T cd04135         102 -------APNVPYLLVGTQIDLRDDPK-----------------------------------------------------  121 (174)
T ss_pred             -------CCCCCEEEEeEchhhhcChh-----------------------------------------------------
Confidence                   24789999999999743110                                                     


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV  331 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv  331 (355)
                                            ....+..                 .....+...++..+++..++ ++++|||++|.||
T Consensus       122 ----------------------~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi  162 (174)
T cd04135         122 ----------------------TLARLND-----------------MKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGL  162 (174)
T ss_pred             ----------------------hHHHHhh-----------------ccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCH
Confidence                                  0000001                 01344556677777877786 8999999999999


Q ss_pred             HHHHHHHHHHc
Q psy15725        332 KQLFRRVAAAL  342 (355)
Q Consensus       332 ~~l~~~l~~~i  342 (355)
                      +++|+.+++.+
T Consensus       163 ~~~f~~~~~~~  173 (174)
T cd04135         163 KTVFDEAILAI  173 (174)
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.92  E-value=1.2e-23  Score=175.28  Aligned_cols=100  Identities=32%  Similarity=0.619  Sum_probs=81.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      +.||+++|++|||||||++++.++.+.+.+.|                       |++..+. ..+.++++.+.+.+|||
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~-----------------------t~~~~~~-~~~~~~~~~~~l~i~Dt   56 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-----------------------TVFENYV-ADIEVDGKQVELALWDT   56 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCC-----------------------ccccceE-EEEEECCEEEEEEEEeC
Confidence            46999999999999999999999666555444                       4343332 34456777789999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRT  136 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~  136 (355)
                      +|++.+...+...+.++|++++|||++++++|+.+. .|+..+..
T Consensus        57 ~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~  101 (175)
T cd01870          57 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH  101 (175)
T ss_pred             CCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            999999999888999999999999999999998884 58877753

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0097|consensus

Probab=99.92  E-value=7.8e-25  Score=165.48  Aligned_cols=155  Identities=39%  Similarity=0.712  Sum_probs=140.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      .-+|-.++|+-|||||||+++|+..+|                       ......|+|+.|..+.+.+.+..+++++||
T Consensus        10 yifkyiiigdmgvgkscllhqftekkf-----------------------madcphtigvefgtriievsgqkiklqiwd   66 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKF-----------------------MADCPHTIGVEFGTRIIEVSGQKIKLQIWD   66 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHH-----------------------hhcCCcccceecceeEEEecCcEEEEEEee
Confidence            457899999999999999999999554                       444556789999999999999999999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |.|+++|+.....+++++-+.+.|||++++.+...+..|+...+.+                                  
T Consensus        67 tagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~l----------------------------------  112 (215)
T KOG0097|consen   67 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----------------------------------  112 (215)
T ss_pred             cccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhcc----------------------------------
Confidence            9999999999999999999999999999999999999998887654                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                             ..++..+++++||+|+...+.++.++..+++.+.+..|.++|++++.+++..
T Consensus       113 -------tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen  113 -------TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             -------CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence                   3468899999999999999999999999999999999999999999988753

>cd04129 Rho2 Rho2 subfamily

Probab=99.92  E-value=2.3e-23  Score=175.59  Aligned_cols=178  Identities=30%  Similarity=0.534  Sum_probs=130.8

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      +.||+++|++|||||||++++..+.+.+.+.                       +++...+. ..+.+++....+.+||+
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~-----------------------~t~~~~~~-~~~~~~~~~~~l~i~Dt   56 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYH-----------------------PTVFENYV-TDCRVDGKPVQLALWDT   56 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccC-----------------------CcccceEE-EEEEECCEEEEEEEEEC
Confidence            4699999999999999999999765544433                       33332332 34455667788999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +|++.+....+..++.+|++++|||++++++|+.+. .|+..+...                                  
T Consensus        57 ~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~----------------------------------  102 (187)
T cd04129          57 AGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY----------------------------------  102 (187)
T ss_pred             CCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh----------------------------------
Confidence            999988887777889999999999999999999986 588887642                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                              ..++|+++|+||+|+.+... .                                                  
T Consensus       103 --------~~~~piilvgnK~Dl~~~~~-~--------------------------------------------------  123 (187)
T cd04129         103 --------CPNVPVILVGLKKDLRQDAV-A--------------------------------------------------  123 (187)
T ss_pred             --------CCCCCEEEEeeChhhhhCcc-c--------------------------------------------------
Confidence                    13688999999999632100 0                                                  


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g  330 (355)
                                 .                 +               +....+.+...++..+++..++ ++++|||++|.|
T Consensus       124 -----------~-----------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  160 (187)
T cd04129         124 -----------K-----------------E---------------EYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG  160 (187)
T ss_pred             -----------c-----------------c---------------ccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence                       0                 0               0001233344556667777774 899999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCC
Q psy15725        331 VKQLFRRVAAALPGMDSTEN  350 (355)
Q Consensus       331 v~~l~~~l~~~i~~~~~~~~  350 (355)
                      |+++|+++++.+..-++.+.
T Consensus       161 v~~~f~~l~~~~~~~~~~~~  180 (187)
T cd04129         161 VDDVFEAATRAALLVRKSEP  180 (187)
T ss_pred             HHHHHHHHHHHHhcccCccc
Confidence            99999999999887776554

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.91  E-value=1.8e-23  Score=172.21  Aligned_cols=98  Identities=32%  Similarity=0.592  Sum_probs=78.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++++...+...+.+                       +.+.. .......+++...+.+||+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~~~~~~~i~D~~   56 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEP-----------------------TKADS-YRKKVVLDGEDVQLNILDTA   56 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCC-----------------------cchhh-EEEEEEECCEEEEEEEEECC
Confidence            5899999999999999999998665444333                       33322 23445667778899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |+..+...+..+++.+|++++|||++++.+|.....|+..+.
T Consensus        57 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~   98 (164)
T cd04139          57 GQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQIL   98 (164)
T ss_pred             ChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888877766654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04149 Arf6 Arf6 subfamily

Probab=99.91  E-value=7.2e-24  Score=175.43  Aligned_cols=95  Identities=18%  Similarity=0.439  Sum_probs=74.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++++..+.+..                        +.||++.++...    ....+.+.+||
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~------------------------~~~t~g~~~~~~----~~~~~~~~l~D   59 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT------------------------TIPTVGFNVETV----TYKNVKFNVWD   59 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc------------------------ccCCcccceEEE----EECCEEEEEEE
Confidence            56899999999999999999998754322                        234555544322    12457899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      |||++++..+++.+++.+|++++|||++++.+|+....|+.++
T Consensus        60 t~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~  102 (168)
T cd04149          60 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRI  102 (168)
T ss_pred             CCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHH
Confidence            9999999999999999999999999999988888776665544

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.91  E-value=4.8e-24  Score=179.08  Aligned_cols=100  Identities=27%  Similarity=0.501  Sum_probs=80.0

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEEE
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLW   90 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~   90 (355)
                      +.+||+++|++|||||||++++..+.+...                        .||.++++....+.. ++..+.+.+|
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~------------------------~~t~~~~~~~~~~~~~~~~~~~l~l~   57 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT------------------------VPTKGFNTEKIKVSLGNSKGITFHFW   57 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc------------------------CCccccceeEEEeeccCCCceEEEEE
Confidence            468999999999999999999988544322                        345555554444433 3466889999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||+|++.+..++..+++.+|++++|||++++.+++.+..|+.++.
T Consensus        58 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~  102 (183)
T cd04152          58 DVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKIT  102 (183)
T ss_pred             ECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888888777776664

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.91  E-value=4.5e-24  Score=177.89  Aligned_cols=95  Identities=19%  Similarity=0.437  Sum_probs=76.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++++..+.+.                        .+.||++.++....    ...+.+.+||
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~------------------------~~~~t~~~~~~~~~----~~~~~l~l~D   63 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV------------------------TTIPTIGFNVETVT----YKNISFTVWD   63 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC------------------------CcCCccccceEEEE----ECCEEEEEEE
Confidence            4699999999999999999999764432                        13456665554322    3457899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      |||++.+..++..+++++|++++|||++++++++....|+..+
T Consensus        64 ~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~  106 (175)
T smart00177       64 VGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRM  106 (175)
T ss_pred             CCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998877776665

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0395|consensus

Probab=99.91  E-value=1.9e-24  Score=181.55  Aligned_cols=157  Identities=40%  Similarity=0.627  Sum_probs=138.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|.+|||||+|+-+|....|.+.                       +.||++ +.+.+.+.+++..+.+.|+|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~-----------------------y~ptie-d~y~k~~~v~~~~~~l~ilD   57 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVED-----------------------YDPTIE-DSYRKELTVDGEVCMLEILD   57 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccc-----------------------cCCCcc-ccceEEEEECCEEEEEEEEc
Confidence            468999999999999999999999655555                       455555 77788888999999999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |+|+++|..++..+++.+|++++||+++++.||+.+..+++.|.+.+.                                
T Consensus        58 t~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~--------------------------------  105 (196)
T KOG0395|consen   58 TAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKG--------------------------------  105 (196)
T ss_pred             CCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC--------------------------------
Confidence            999999999999999999999999999999999999999999954432                                


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEE
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL  232 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~  232 (355)
                              ...+|+++||||+|+...+.++.+++..++..++++++++|++...++++++.
T Consensus       106 --------~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~  158 (196)
T KOG0395|consen  106 --------RDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY  158 (196)
T ss_pred             --------cCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence                    23699999999999999999999999999999999999999999877776543

>cd04158 ARD1 ARD1 subfamily

Probab=99.91  E-value=1.3e-23  Score=174.09  Aligned_cols=93  Identities=23%  Similarity=0.467  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||++++.+..+..                        +.||++.++..    ++.....+.+|||||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~------------------------~~~T~~~~~~~----~~~~~~~i~l~Dt~G   52 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ------------------------PIPTIGFNVET----VEYKNLKFTIWDVGG   52 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC------------------------cCCcCceeEEE----EEECCEEEEEEECCC
Confidence            68999999999999999999854322                        34555555432    233457899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +..+...+..+++.+|++++|||++++++|..+..|+..+.
T Consensus        53 ~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~   93 (169)
T cd04158          53 KHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLL   93 (169)
T ss_pred             ChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999988887776663

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.91  E-value=8.5e-24  Score=178.90  Aligned_cols=161  Identities=19%  Similarity=0.296  Sum_probs=113.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-----CcEEEEE
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-----DRTVRLQ   88 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~   88 (355)
                      +||+++|++|||||||++++..+.+...                       +.+|++.++..+.+.++     ++.+.+.
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~-----------------------~~~Tig~~~~~k~~~~~~~~~~~~~~~l~   57 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGR-----------------------PSWTVGCSVDVKHHTYKEGTPEEKTFFVE   57 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------CCcceeeeEEEEEEEEcCCCCCCcEEEEE
Confidence            5899999999999999999999655444                       44555656655555543     4678999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||+|++.|..++..+++++|++|+|||+++++||+++..|+.++.......                    .......
T Consensus        58 IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~--------------------~~~~~~~  117 (202)
T cd04102          58 LWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFP--------------------TGLLVTN  117 (202)
T ss_pred             EEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccc--------------------ccccccc
Confidence            99999999999999999999999999999999999999999999997542100                    0000000


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhh----hhhhhhccCeEEEEe
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE----GERKAKELNVMFIET  219 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~----~~~~~~~~~~~~~~~  219 (355)
                      ...  ........++|+++||||+|+.+++.+....    ...++++.+.+....
T Consensus       118 ~~~--~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~  170 (202)
T cd04102         118 GDY--DSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINL  170 (202)
T ss_pred             ccc--cccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEE
Confidence            000  0000112479999999999997766554443    234455666654444

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.91  E-value=4.4e-24  Score=175.11  Aligned_cols=93  Identities=19%  Similarity=0.461  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|.+|||||||++++..+.+..                        +.||++.++.  .+  ....+.+.+||+|
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~------------------------~~pt~g~~~~--~~--~~~~~~~~l~D~~   52 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT------------------------TIPTIGFNVE--TV--EYKNISFTVWDVG   52 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc------------------------cCCCCCcceE--EE--EECCEEEEEEECC
Confidence            589999999999999999998755432                        2345555442  22  2345789999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      |++++..++..+++++|++++|||++++.+|+....|+..+
T Consensus        53 G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~   93 (159)
T cd04150          53 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRM   93 (159)
T ss_pred             CCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998898877766554

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.91  E-value=1.4e-23  Score=175.75  Aligned_cols=95  Identities=18%  Similarity=0.458  Sum_probs=75.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++++..+.+..                        +.||++.++..    ++...+.+++||
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~------------------------~~pt~g~~~~~----~~~~~~~~~i~D   67 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIVT------------------------TIPTIGFNVET----VEYKNISFTVWD   67 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCcc------------------------ccCCcceeEEE----EEECCEEEEEEE
Confidence            45899999999999999999998754432                        24555655432    233457899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      +||++.+..++..+++++|++|+|||++++++++....|+..+
T Consensus        68 ~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~  110 (181)
T PLN00223         68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM  110 (181)
T ss_pred             CCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998887766555443

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.91  E-value=5.9e-23  Score=176.99  Aligned_cols=107  Identities=27%  Similarity=0.625  Sum_probs=88.2

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      +.....+.+||+++|++|||||||+++++.+.+                       ...+.+|++.++....+..+++.+
T Consensus         2 ~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~i   58 (215)
T PTZ00132          2 QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEF-----------------------EKKYIPTLGVEVHPLKFYTNCGPI   58 (215)
T ss_pred             ccccCCCCceEEEECCCCCCHHHHHHHHHhCCC-----------------------CCCCCCccceEEEEEEEEECCeEE
Confidence            455677889999999999999999999988544                       344556667777777777788889


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      .+.+|||+|++.|..++..+++.++++++|||++++.+|..+..|+..+.
T Consensus        59 ~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~  108 (215)
T PTZ00132         59 CFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIV  108 (215)
T ss_pred             EEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            99999999999998888888888899999999888888887777766653

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.91  E-value=5.7e-23  Score=172.14  Aligned_cols=168  Identities=33%  Similarity=0.478  Sum_probs=125.7

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      .||+++|++|||||||++++....+...+.|                       +++..+ ...+.+++..+.+.+||||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~-----------------------t~~~~~-~~~~~~~~~~~~~~l~D~~   57 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYP-----------------------TIENTF-SKIIRYKGQDYHLEIVDTA   57 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCc-----------------------chhhhE-EEEEEECCEEEEEEEEECC
Confidence            6899999999999999999998665544433                       333222 2334455666789999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |+++|...+..++..+|++++|||.++..+|+.+..|+..+.+.                                    
T Consensus        58 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~------------------------------------  101 (180)
T cd04137          58 GQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDM------------------------------------  101 (180)
T ss_pred             ChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------------
Confidence            99999888888888899999999999888888777665544221                                    


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (180)
T cd04137         102 --------------------------------------------------------------------------------  101 (180)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                                                  ....+.|+++++||+|+...+.+...+...+++..+++++++||++|.|+++
T Consensus       102 ----------------------------~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  153 (180)
T cd04137         102 ----------------------------LGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEE  153 (180)
T ss_pred             ----------------------------cCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence                                        0013567777777777755555555555566666778999999999999999


Q ss_pred             HHHHHHHHcCCCCCCC
Q psy15725        334 LFRRVAAALPGMDSTE  349 (355)
Q Consensus       334 l~~~l~~~i~~~~~~~  349 (355)
                      +|.+|.+.+.......
T Consensus       154 l~~~l~~~~~~~~~~~  169 (180)
T cd04137         154 AFELLIEEIEKVENPL  169 (180)
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999988665444

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.90  E-value=7.2e-23  Score=174.12  Aligned_cols=97  Identities=30%  Similarity=0.597  Sum_probs=77.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||+++|+.+.+...+.+                       ++. ++....+.+.+..+.+++||+||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~-----------------------t~~-~~~~~~~~~~~~~~~l~i~D~~G   56 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRR-----------------------TVE-EMHRKEYEVGGVSLTLDILDTSG   56 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCC-----------------------chh-hheeEEEEECCEEEEEEEEECCC
Confidence            689999999999999999999665544433                       332 23344555666678899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +..|..++..++..+|++++|||++++.+|+.+..|+..+.
T Consensus        57 ~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~   97 (198)
T cd04147          57 SYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEIL   97 (198)
T ss_pred             chhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            99998888888899999999999999888888887776664

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=1e-23  Score=176.69  Aligned_cols=95  Identities=18%  Similarity=0.466  Sum_probs=75.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||++++..+.+..                        +.||++.++..    ++...+.+.+||
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~------------------------~~~T~~~~~~~----~~~~~~~~~l~D   67 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT------------------------TIPTIGFNVET----VEYKNLKFTMWD   67 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc------------------------cCCccccceEE----EEECCEEEEEEE
Confidence            35899999999999999999998754432                        23455554432    223457899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      |||++.+...+..+++.+|++|+|||++++++|.....++..+
T Consensus        68 ~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~  110 (182)
T PTZ00133         68 VGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERM  110 (182)
T ss_pred             CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888776655544

>cd00876 Ras Ras family

Probab=99.90  E-value=8.5e-23  Score=167.38  Aligned_cols=97  Identities=34%  Similarity=0.582  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||++++++..+...                       +.++.+ +........++..+.+.+||+||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~-----------------------~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g   56 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEE-----------------------YDPTIE-DSYRKTIVVDGETYTLDILDTAG   56 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcC-----------------------cCCChh-HeEEEEEEECCEEEEEEEEECCC
Confidence            699999999999999999998554333                       333434 34445556666678999999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +..+...+..+++.+|++++|||+++++++.+...|...+.
T Consensus        57 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~   97 (160)
T cd00876          57 QEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQIL   97 (160)
T ss_pred             hHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            99988888888999999999999999888888877766654

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00157 Rho Rho (Ras homology) family

Probab=99.90  E-value=1.7e-22  Score=167.66  Aligned_cols=99  Identities=33%  Similarity=0.647  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++|++..+...+.|+                       .. +........++..+.+.+||+|
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~l~~~D~~   56 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPT-----------------------VF-DNYSATVTVDGKQVNLGLWDTA   56 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-----------------------ee-eeeEEEEEECCEEEEEEEEeCC
Confidence            58999999999999999999996654443333                       22 2233444556778899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRT  136 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~  136 (355)
                      |++++...+...++.+|++++|||++++.+|... ..|+..+..
T Consensus        57 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  100 (171)
T cd00157          57 GQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRH  100 (171)
T ss_pred             CcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999988888889999999999999999999775 457777653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PLN00023 GTP-binding protein; Provisional

Probab=99.90  E-value=5e-23  Score=182.23  Aligned_cols=156  Identities=21%  Similarity=0.326  Sum_probs=118.3

Q ss_pred             CCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-----
Q psy15725          7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-----   81 (355)
Q Consensus         7 ~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----   81 (355)
                      ...+...+||+++|+.|||||||+++|.++.+                       ...+.+|++.++..+.+.++     
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F-----------------------~~~~~pTIG~d~~ik~I~~~~~~~~   71 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSS-----------------------IARPPQTIGCTVGVKHITYGSPGSS   71 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCc-----------------------ccccCCceeeeEEEEEEEECCcccc
Confidence            34567789999999999999999999999554                       34455666777665555543     


Q ss_pred             --------CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccc
Q psy15725         82 --------DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETN  153 (355)
Q Consensus        82 --------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
                              ++.+.++||||+|++.|..++..+++++|++|+|||++++.+|+++..|++++....... .          
T Consensus        72 ~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s-~----------  140 (334)
T PLN00023         72 SNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFS-A----------  140 (334)
T ss_pred             cccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccc-c----------
Confidence                    246889999999999999999999999999999999999999999999999997542100 0          


Q ss_pred             cccccccccCccccCccccccccccCCCccEEEEEeecCCCCccc---c---eehhhhhhhhhccCe
Q psy15725        154 FTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR---Q---VSTEEGERKAKELNV  214 (355)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---~---v~~~~~~~~~~~~~~  214 (355)
                               +..         .......++|++|||||+|+...+   .   +..+++.+++++.+.
T Consensus       141 ---------p~~---------s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        141 ---------PLG---------SGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             ---------ccc---------cccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence                     000         000012368999999999996542   2   356788889888775

>cd01893 Miro1 Miro1 subfamily

Probab=99.90  E-value=1.7e-22  Score=167.01  Aligned_cols=98  Identities=21%  Similarity=0.451  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++.++.+++.++++.                        .++ .....+++..+.+.+||||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~------------------------~~~-~~~~~~~~~~~~~~i~Dt~   55 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL------------------------PEI-TIPADVTPERVPTTIVDTS   55 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc------------------------cce-EeeeeecCCeEEEEEEeCC
Confidence            489999999999999999999977654432211                        011 2223345677899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRT  136 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~  136 (355)
                      |.+.+...+..+++.+|++++|||++++.+|+.+. .|++.++.
T Consensus        56 G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~   99 (166)
T cd01893          56 SRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRR   99 (166)
T ss_pred             CchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            99888777777788999999999999999998874 67776653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.90  E-value=1.9e-23  Score=172.19  Aligned_cols=139  Identities=20%  Similarity=0.294  Sum_probs=110.5

Q ss_pred             EEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   95 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   95 (355)
                      |+++|++|||||||+++|.++.+...+                       .||++++.    ..++++.+.+.+||+||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~-----------------------~pt~g~~~----~~i~~~~~~l~i~Dt~G~   54 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESV-----------------------VPTTGFNS----VAIPTQDAIMELLEIGGS   54 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccc-----------------------cccCCcce----EEEeeCCeEEEEEECCCC
Confidence            799999999999999999986554443                       44545432    234456789999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccc
Q psy15725         96 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDV  175 (355)
Q Consensus        96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (355)
                      ++|..++..+++++|++++|||++++.+|.....|+.++...                                      
T Consensus        55 ~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~--------------------------------------   96 (164)
T cd04162          55 QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH--------------------------------------   96 (164)
T ss_pred             cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC--------------------------------------
Confidence            999999999999999999999999999999988888877421                                      


Q ss_pred             cccCCCccEEEEEeecCCCCcccceeh----hhhhhhhhccCeEEEEeeeee
Q psy15725        176 RTERGSDVIIMLVGNKTDLSDKRQVST----EEGERKAKELNVMFIETSAKA  223 (355)
Q Consensus       176 ~~~~~~~~piilv~nK~D~~~~~~v~~----~~~~~~~~~~~~~~~~~sa~~  223 (355)
                          ..++|+++|+||+|+...+.+..    .....++++.+..++++|+.+
T Consensus        97 ----~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~  144 (164)
T cd04162          97 ----PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD  144 (164)
T ss_pred             ----CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence                14799999999999976654432    344566666778888888887

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04154 Arl2 Arl2 subfamily

Probab=99.89  E-value=1.6e-22  Score=168.38  Aligned_cols=97  Identities=21%  Similarity=0.489  Sum_probs=75.1

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ....+||+++|++|||||||++++.+..+.                        .+.+|+++....  +.++  ...+.+
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~------------------------~~~~t~g~~~~~--~~~~--~~~l~l   62 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDID------------------------TISPTLGFQIKT--LEYE--GYKLNI   62 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCC------------------------CcCCccccceEE--EEEC--CEEEEE
Confidence            345689999999999999999999874321                        223455543332  2233  478999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      |||||++.+...+..+++.+|++++|||++++.+|+....|+..+
T Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  107 (173)
T cd04154          63 WDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKEL  107 (173)
T ss_pred             EECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            999999998888888999999999999999998888877776655

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00154 Rab Rab family

Probab=99.89  E-value=8.7e-23  Score=166.72  Aligned_cols=153  Identities=53%  Similarity=0.891  Sum_probs=129.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++.+..+..                       .+.+|.+.++....+..++....+.+||+|
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~   57 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDE-----------------------NYKSTIGVDFKSKTIEIDGKTVKLQIWDTA   57 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCC-----------------------ccCCceeeeeEEEEEEECCEEEEEEEEecC
Confidence            589999999999999999999855433                       345566777777777777788899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |+..+...+..+++++|++++|||++++++++.+..|+..+....                                   
T Consensus        58 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-----------------------------------  102 (159)
T cd00154          58 GQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYA-----------------------------------  102 (159)
T ss_pred             ChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----------------------------------
Confidence            999999999999999999999999999999999999999887542                                   


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                            ....|+++++||+|...+.....++...+....+.+++++|+.++.+++++
T Consensus       103 ------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~  153 (159)
T cd00154         103 ------PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEEL  153 (159)
T ss_pred             ------CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence                  137999999999999755666677777888888899999999998877654

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.88  E-value=2.9e-22  Score=166.87  Aligned_cols=95  Identities=24%  Similarity=0.506  Sum_probs=73.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++++..+.+...                        .||++.++..  ..  .....+.+||
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~------------------------~~t~~~~~~~--~~--~~~~~~~l~D   65 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT------------------------SPTIGSNVEE--IV--YKNIRFLMWD   65 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCc------------------------CCccccceEE--EE--ECCeEEEEEE
Confidence            468999999999999999999998654332                        2344433322  22  2357899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      +||++.+...+..+++.+|++++|||+++++++.....|+..+
T Consensus        66 ~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~  108 (174)
T cd04153          66 IGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKM  108 (174)
T ss_pred             CCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988887766555444

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.88  E-value=1.1e-21  Score=162.29  Aligned_cols=100  Identities=23%  Similarity=0.392  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||++++.+......                 ......+.+|++.++...  .+  ....+.+|||||
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~-----------------~~~~~~~~~t~~~~~~~~--~~--~~~~~~l~Dt~G   59 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYK-----------------GLPPSKITPTVGLNIGTI--EV--GNARLKFWDLGG   59 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhccccc-----------------CCcccccCCccccceEEE--EE--CCEEEEEEECCC
Confidence            589999999999999999987432100                 122334556666665332  23  257899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ++.+...+..+++.+|++++|||+++++++.....|+..+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~  100 (167)
T cd04160          60 QESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVL  100 (167)
T ss_pred             ChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHH
Confidence            99999888889999999999999999888887777766653

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PTZ00099 rab6; Provisional

Probab=99.88  E-value=2.6e-21  Score=160.77  Aligned_cols=77  Identities=75%  Similarity=1.241  Sum_probs=68.7

Q ss_pred             CCCCCccccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         59 DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        59 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +.|.+.+.||++.++..+.+.++++.+.+.+|||+|++.|..++..+++++|++|+|||++++++|+.+..|+..+.
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~   79 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDIL   79 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            45667788999999998888899999999999999999999999999999999999999999999988888877664

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.88  E-value=4.1e-21  Score=159.79  Aligned_cols=96  Identities=25%  Similarity=0.494  Sum_probs=77.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|..|||||||++++..+...                        .+.||.|++.....+    ....+.+|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~------------------------~~~pT~g~~~~~i~~----~~~~~~~~   63 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS------------------------ETIPTIGFNIEEIKY----KGYSLTIW   63 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE------------------------EEEEESSEEEEEEEE----TTEEEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc------------------------ccCcccccccceeee----CcEEEEEE
Confidence            57899999999999999999999874321                        145777766554443    45789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      |++|+..++..|+.++..+|++|||+|.++.+.+......+..+
T Consensus        64 d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~l  107 (175)
T PF00025_consen   64 DLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKEL  107 (175)
T ss_dssp             EESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHH
T ss_pred             eccccccccccceeeccccceeEEEEecccceeecccccchhhh
Confidence            99999999999999999999999999999988777665555444

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0070|consensus

Probab=99.87  E-value=9.7e-22  Score=157.16  Aligned_cols=97  Identities=19%  Similarity=0.457  Sum_probs=82.0

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.++|+++|-.++||||++.++..+++                       ..+ .||+|++++...+    +++.+.+
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~-----------------------vtt-vPTiGfnVE~v~y----kn~~f~v   65 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEI-----------------------VTT-VPTIGFNVETVEY----KNISFTV   65 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCc-----------------------ccC-CCccccceeEEEE----cceEEEE
Confidence            45789999999999999999999988543                       222 7888988887774    4789999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      ||++|++.++.+|+.|+.+.+++|||+|.+|++.+...+..+..+
T Consensus        66 WDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~  110 (181)
T KOG0070|consen   66 WDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRM  110 (181)
T ss_pred             EecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988887665544444

>cd01890 LepA LepA subfamily

Probab=99.87  E-value=3.5e-21  Score=161.07  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-----cCcEEEEEE
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-----EDRTVRLQL   89 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~~i   89 (355)
                      +|+++|++|||||||+++|++....-...       .+...+. . . ....++.+.++.......     +++.+.+++
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~-------~~~~~~~-~-~-~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l   71 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKR-------EMKEQVL-D-S-MDLERERGITIKAQTVRLNYKAKDGQEYLLNL   71 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcC-------CCceEec-c-C-ChhHHHCCCeEecceEEEEEecCCCCcEEEEE
Confidence            69999999999999999999843100000       0000000 0 0 001122333443333222     566788999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhH
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT  127 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~  127 (355)
                      |||||+++|...+..+++.+|++++|||+++..+++..
T Consensus        72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~  109 (179)
T cd01890          72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL  109 (179)
T ss_pred             EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH
Confidence            99999999888888888888998888888775444443

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00879 Sar1 Sar1 subfamily

Probab=99.87  E-value=4.3e-21  Score=162.21  Aligned_cols=97  Identities=21%  Similarity=0.384  Sum_probs=75.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+..||+++|++|||||||++++.++.+. .+.                       ||++...  ..+.++  ...+.+|
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~-----------------------~T~~~~~--~~i~~~--~~~~~l~   68 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHV-----------------------PTLHPTS--EELTIG--NIKFKTF   68 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccC-----------------------CccCcce--EEEEEC--CEEEEEE
Confidence            45789999999999999999999986542 222                       2333222  122233  3678999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |+||+..+...+..+++.+|++++|+|+++..+|.....|+..+.
T Consensus        69 D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~  113 (190)
T cd00879          69 DLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLL  113 (190)
T ss_pred             ECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHH
Confidence            999999998888889999999999999999988987777777664

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0073|consensus

Probab=99.86  E-value=4.9e-21  Score=148.91  Aligned_cols=91  Identities=21%  Similarity=0.447  Sum_probs=74.1

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      +.+.++|+++|..|+||||++++|.+..                        .+...||.+++.....    .+...+++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~------------------------~~~i~pt~gf~Iktl~----~~~~~L~i   64 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED------------------------TDTISPTLGFQIKTLE----YKGYTLNI   64 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC------------------------ccccCCccceeeEEEE----ecceEEEE
Confidence            3458999999999999999999998732                        4455777777654443    56689999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHH
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS  128 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~  128 (355)
                      ||.+|+..++..|+.|+.++|++|+|||.+|+..|+.-.
T Consensus        65 wDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~  103 (185)
T KOG0073|consen   65 WDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECK  103 (185)
T ss_pred             EEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHH
Confidence            999999999999999999999999999998876666543

>KOG0078|consensus

Probab=99.86  E-value=1.2e-21  Score=159.97  Aligned_cols=118  Identities=45%  Similarity=0.781  Sum_probs=114.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+++|||+|++.|+++...||.+|+++++|||+++..+|+++..|++.+.++..+++|++||+||+|+...+.+..+
T Consensus        59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e  138 (207)
T KOG0078|consen   59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKE  138 (207)
T ss_pred             eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHH
Confidence            67889999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .+..+++.+|++++|+||++|.||++.|-.|++.|..+
T Consensus       139 ~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k  176 (207)
T KOG0078|consen  139 RGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQK  176 (207)
T ss_pred             HHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999854

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.86  E-value=1.2e-20  Score=158.52  Aligned_cols=97  Identities=21%  Similarity=0.321  Sum_probs=74.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.++|+++|.+|||||||++++.++.+..                        +.||.+.....  +.  .....+.+|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~------------------------~~~t~~~~~~~--~~--~~~~~~~~~   66 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ------------------------HQPTQHPTSEE--LA--IGNIKFTTF   66 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc------------------------cCCccccceEE--EE--ECCEEEEEE
Confidence            456999999999999999999999854322                        12233322211  11  234689999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |+||+..+...+..++..+|++++|+|++++.++.....|+.++.
T Consensus        67 D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~  111 (184)
T smart00178       67 DLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALL  111 (184)
T ss_pred             ECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988888777766653

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.86  E-value=3.4e-21  Score=159.29  Aligned_cols=142  Identities=19%  Similarity=0.268  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||++++.+. +..                       .+.||++...  ..+.  .....+.+||+||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~-----------------------~~~~t~g~~~--~~~~--~~~~~~~i~D~~G   52 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPK-----------------------KVAPTVGFTP--TKLR--LDKYEVCIFDLGG   52 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCc-----------------------cccCcccceE--EEEE--ECCEEEEEEECCC
Confidence            4899999999999999999874 322                       3445555442  2222  3457899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      ++.++.++..+++.+|++++|||++++.+|+....|+..+...                                     
T Consensus        53 ~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~-------------------------------------   95 (167)
T cd04161          53 GANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQH-------------------------------------   95 (167)
T ss_pred             cHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcC-------------------------------------
Confidence            9999999999999999999999999999999999898887532                                     


Q ss_pred             ccccCCCccEEEEEeecCCCCcccc----eehhhhhhhhhcc--CeEEEEeeeeec
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQ----VSTEEGERKAKEL--NVMFIETSAKAG  224 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~----v~~~~~~~~~~~~--~~~~~~~sa~~~  224 (355)
                         ....++|+++|+||+|+.+.+.    +......++++..  ...+.++|+.++
T Consensus        96 ---~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g  148 (167)
T cd04161          96 ---PRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG  148 (167)
T ss_pred             ---ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence               1224789999999999976542    1222223343322  357888999887

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04157 Arl6 Arl6 subfamily

Probab=99.85  E-value=3.9e-21  Score=158.01  Aligned_cols=153  Identities=18%  Similarity=0.258  Sum_probs=108.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||+++|.+...                      ....+.||+++.+..    +......+.+|||||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~----------------------~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G   54 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENA----------------------QSQIIVPTVGFNVES----FEKGNLSFTAFDMSG   54 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCC----------------------CcceecCccccceEE----EEECCEEEEEEECCC
Confidence            589999999999999999998431                      122334555544322    123457899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      ++++..++..+++.+|++++|+|++++.+|.....|+..+....                                    
T Consensus        55 ~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~------------------------------------   98 (162)
T cd04157          55 QGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHP------------------------------------   98 (162)
T ss_pred             CHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCc------------------------------------
Confidence            99999999999999999999999999999988888877764320                                    


Q ss_pred             ccccCCCccEEEEEeecCCCCccccee-hhhhhhhh--hccCeEEEEeeeeeccccceEE
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKA--KELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~-~~~~~~~~--~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                        .....++|+++|+||+|+.+..... ..+.....  ......++++|+.++.++++++
T Consensus        99 --~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~  156 (162)
T cd04157          99 --DIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV  156 (162)
T ss_pred             --ccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence              0112479999999999986532111 11111111  1223468899999998887643

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04151 Arl1 Arl1 subfamily

Probab=99.84  E-value=1.7e-21  Score=159.63  Aligned_cols=149  Identities=20%  Similarity=0.354  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||++++..+.+..                        +.||++.++..    +++....+++|||||
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~------------------------~~~t~~~~~~~----~~~~~~~~~i~Dt~G   52 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT------------------------TIPTIGFNVET----VTYKNLKFQVWDLGG   52 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC------------------------cCCccCcCeEE----EEECCEEEEEEECCC
Confidence            68999999999999999997744321                        23455544332    223457899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      ++.+...+..++..+|++++|+|++++.++.....|+..+...                                     
T Consensus        53 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~-------------------------------------   95 (158)
T cd04151          53 QTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEE-------------------------------------   95 (158)
T ss_pred             CHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-------------------------------------
Confidence            9999999999999999999999999988887665555443211                                     


Q ss_pred             ccccCCCccEEEEEeecCCCCccccee---hhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVS---TEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~---~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                         ....++|+++|+||+|+.+.....   ...........+.+++++|+.++.++++++
T Consensus        96 ---~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  152 (158)
T cd04151          96 ---EELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM  152 (158)
T ss_pred             ---hhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence               112378999999999986432111   111111112233579999999999887654

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.84  E-value=5.7e-21  Score=156.78  Aligned_cols=150  Identities=21%  Similarity=0.391  Sum_probs=108.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||+++|.++.+...                        .||+++++..  +.. .....+.+||+||
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~------------------------~~t~~~~~~~--~~~-~~~~~l~i~D~~G   53 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT------------------------IPTVGFNVEM--LQL-EKHLSLTVWDVGG   53 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc------------------------cCccCcceEE--EEe-CCceEEEEEECCC
Confidence            589999999999999999998654321                        3444444322  222 2457899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      ++.+...+..+++.+|++++|+|++++.++..+..|+.++...                                     
T Consensus        54 ~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~-------------------------------------   96 (160)
T cd04156          54 QEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKN-------------------------------------   96 (160)
T ss_pred             CHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-------------------------------------
Confidence            9999999999999999999999999999999888887776432                                     


Q ss_pred             ccccCCCccEEEEEeecCCCCccc---ceehh-hhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKR---QVSTE-EGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~---~v~~~-~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                         ....++|+++|+||+|+....   .+... ....++...+.+++++|+.++.++++++
T Consensus        97 ---~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          97 ---EHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             ---hhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence               112479999999999985421   11111 1122233344578999999999887653

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0098|consensus

Probab=99.84  E-value=8.7e-21  Score=150.73  Aligned_cols=120  Identities=46%  Similarity=0.764  Sum_probs=114.0

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS  305 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~  305 (355)
                      +...+.++||||+|++.|+++.+++|+++.++++|||++...+|.++..|+..+..+..++..++|++||+||...+.++
T Consensus        51 d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs  130 (216)
T KOG0098|consen   51 DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVS  130 (216)
T ss_pred             cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccccc
Confidence            45688999999999999999999999999999999999999999999999999999877899999999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .++..+++++++..++++||++++||+|.|....+.|.+.
T Consensus       131 ~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~  170 (216)
T KOG0098|consen  131 KEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRK  170 (216)
T ss_pred             HHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888754

>KOG4252|consensus

Probab=99.84  E-value=1.1e-22  Score=159.97  Aligned_cols=157  Identities=37%  Similarity=0.593  Sum_probs=143.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ..-+|++|+|..+|||||++.|++.                       +-|...+..|++.++..+.+.+...++++.+|
T Consensus        18 e~aiK~vivGng~VGKssmiqryCk-----------------------gifTkdykktIgvdflerqi~v~~Edvr~mlW   74 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCK-----------------------GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLW   74 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhc-----------------------cccccccccccchhhhhHHHHhhHHHHHHHHH
Confidence            3458999999999999999999998                       66677788889999999999999999999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++|+++|..+...+++++.+-++||..+|+.||+.+..|++++.+..                                
T Consensus        75 dtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--------------------------------  122 (246)
T KOG4252|consen   75 DTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--------------------------------  122 (246)
T ss_pred             HhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--------------------------------
Confidence            999999999999999999999999999999999999999999998642                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEE
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL  232 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~  232 (355)
                                ..+|.++|-||+|+..+..++..+.+.+++..+..++.+|+....|+.+++.
T Consensus       123 ----------~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~  174 (246)
T KOG4252|consen  123 ----------ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA  174 (246)
T ss_pred             ----------ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence                      4899999999999998888999999999999999999999998888776543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.83  E-value=1.3e-19  Score=157.46  Aligned_cols=237  Identities=15%  Similarity=0.155  Sum_probs=134.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|+.|+|||||+++|++..-.......+..++.+      ..+.. .....+.++......+.++..++++|||||
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~------~D~~~-~e~~rg~ti~~~~~~~~~~~~~i~liDTPG   73 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTR------TDTME-LERQRGITIFSAVASFQWEDTKVNLIDTPG   73 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCccc------CCCch-hHhhCCCceeeeeEEEEECCEEEEEEeCCC
Confidence            58999999999999999999854222111112111111      01110 012233444444555556678999999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      +.+|...+..+++.+|++++|+|+.+....+ ...+.+.+..                                      
T Consensus        74 ~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--------------------------------------  114 (237)
T cd04168          74 HMDFIAEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--------------------------------------  114 (237)
T ss_pred             ccchHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--------------------------------------
Confidence            9999988889999999999999999865432 3334444432                                      


Q ss_pred             ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS  254 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~  254 (355)
                            .++|+++++||+|+.....  .....+....++.....+....      +...+.                   
T Consensus       115 ------~~~P~iivvNK~D~~~a~~--~~~~~~i~~~~~~~~~~~~~p~------~~~~~~-------------------  161 (237)
T cd04168         115 ------LNIPTIIFVNKIDRAGADL--EKVYQEIKEKLSSDIVPMQKVG------LAPNIC-------------------  161 (237)
T ss_pred             ------cCCCEEEEEECccccCCCH--HHHHHHHHHHHCCCeEEEECCc------Eeeeee-------------------
Confidence                  2789999999999865321  2223333344443333322110      000000                   


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725        255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l  334 (355)
                          -..+.. ..-++.+-+.-+++.+...++         .++ +.+++.............+|++++||.++.||++|
T Consensus       162 ----~~~~~~-~~l~e~vae~dd~l~e~yl~~---------~~~-~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~l  226 (237)
T cd04168         162 ----ETNEID-DEFWETLAEGDDELLEKYLEG---------GPI-EELELDNELSARIAKRKVFPVYHGSALKGIGIEEL  226 (237)
T ss_pred             ----eeeecc-HHHHHHHhcCCHHHHHHHhCC---------CCC-CHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHH
Confidence                000110 001111222222222222111         011 22233333333444455579999999999999999


Q ss_pred             HHHHHHHcCCC
Q psy15725        335 FRRVAAALPGM  345 (355)
Q Consensus       335 ~~~l~~~i~~~  345 (355)
                      ++.|.+++|.+
T Consensus       227 l~~~~~~~p~~  237 (237)
T cd04168         227 LEGITKLFPTS  237 (237)
T ss_pred             HHHHHHhcCCC
Confidence            99999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.83  E-value=4.7e-20  Score=151.02  Aligned_cols=146  Identities=22%  Similarity=0.338  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||++++.+..+.                        .+.+|+++......    .....+.+||+||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~------------------------~~~~t~~~~~~~~~----~~~~~~~i~D~~G   52 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV------------------------TTIPTIGFNVETVE----YKNVSFTVWDVGG   52 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC------------------------CCCCCcCcceEEEE----ECCEEEEEEECCC
Confidence            6899999999999999999985521                        22344444433222    2347899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      ++.+...+..++..+|++++|||+++++++.....|+..+...                                     
T Consensus        53 ~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~-------------------------------------   95 (158)
T cd00878          53 QDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNE-------------------------------------   95 (158)
T ss_pred             ChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC-------------------------------------
Confidence            9999999999999999999999999999999988887776542                                     


Q ss_pred             ccccCCCccEEEEEeecCCCCcccceehhhhhhhh-----hccCeEEEEeeeeeccccceE
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~-----~~~~~~~~~~sa~~~~~v~~i  230 (355)
                         ......|+++++||+|+....  ..++..+..     .....++.++|+.++.+++.+
T Consensus        96 ---~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  151 (158)
T cd00878          96 ---EELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEG  151 (158)
T ss_pred             ---cccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHH
Confidence               113479999999999986533  111222221     234568999999998887654

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04169 RF3 RF3 subfamily

Probab=99.83  E-value=1e-18  Score=154.31  Aligned_cols=265  Identities=16%  Similarity=0.127  Sum_probs=142.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      .+|+++|++|+|||||+++|++..-.....+++.++..  .......+.. .....+.++......++++...+++||||
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~--~~~t~~D~~~-~e~~rg~si~~~~~~~~~~~~~i~liDTP   79 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKS--RKHATSDWME-IEKQRGISVTSSVMQFEYRDCVINLLDTP   79 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceeccccc--CCCccCCCcH-HHHhCCCCeEEEEEEEeeCCEEEEEEECC
Confidence            47999999999999999999974322222222211000  0000011111 11123444555555667777899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |+.+|.......++.+|++++|+|+++..... ...+.+....                                     
T Consensus        80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~-------------------------------------  121 (267)
T cd04169          80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL-------------------------------------  121 (267)
T ss_pred             CchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh-------------------------------------
Confidence            99988887778889999999999998753322 2233333221                                     


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                             .++|+++++||+|+......  ....++...++.+......+.+.+  .-+.-++|......|... ..   .
T Consensus       122 -------~~~P~iivvNK~D~~~a~~~--~~~~~l~~~l~~~~~~~~~Pi~~~--~~~~g~vd~~~~~a~~~~-~~---~  186 (267)
T cd04169         122 -------RGIPIITFINKLDREGRDPL--ELLDEIEEELGIDCTPLTWPIGMG--KDFKGVYDRRTGEVELYD-RG---A  186 (267)
T ss_pred             -------cCCCEEEEEECCccCCCCHH--HHHHHHHHHHCCCceeEEecccCC--CceEEEEEhhhCEEEEec-CC---C
Confidence                   37899999999998653211  112233344454444444433322  223334443322222100 00   0


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      .....-..++.. ...+.+.+..+.+.+...++         .|.. .++........+....-+|+++.||.+|.||++
T Consensus       187 ~~~~~~~~~~p~-~~~e~~~e~~~~l~e~~~e~---------~~~~-~~~~~~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~  255 (267)
T cd04169         187 GGATIAPEETKG-LDDPKLDELGGDLAEQLREE---------LELL-EGAGPEFDQEAFLAGELTPVFFGSALNNFGVQE  255 (267)
T ss_pred             CCccceeccCCc-ccHHHHHhcCHHHHHHHhCC---------Cccc-hhhhHHHhHHHHHcCCEEEEEecccccCcCHHH
Confidence            000000011110 11133333333333322111         1211 122223333344555557999999999999999


Q ss_pred             HHHHHHHHcCCC
Q psy15725        334 LFRRVAAALPGM  345 (355)
Q Consensus       334 l~~~l~~~i~~~  345 (355)
                      |++.|.+++|.+
T Consensus       256 Lld~i~~~~P~p  267 (267)
T cd04169         256 LLDALVDLAPAP  267 (267)
T ss_pred             HHHHHHHHCCCC
Confidence            999999999864

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.82  E-value=2.3e-19  Score=148.39  Aligned_cols=85  Identities=13%  Similarity=0.180  Sum_probs=59.5

Q ss_pred             cEEEEEEeCCCccc--HHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        255 TVAVVVYDITNANS--FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       255 ~~vi~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                      +++++|+|+++..+  ++....|+..+.... .+.|+++|+||.|+.+.+.+..  ...+.+..++++++|||++|.|++
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~  157 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVD  157 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCHH
Confidence            45667777766543  244445666665432 4789999999999865544332  334444456799999999999999


Q ss_pred             HHHHHHHHHc
Q psy15725        333 QLFRRVAAAL  342 (355)
Q Consensus       333 ~l~~~l~~~i  342 (355)
                      ++|++|.+.+
T Consensus       158 ~l~~~l~~~~  167 (168)
T cd01897         158 EVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0080|consensus

Probab=99.82  E-value=6.7e-20  Score=141.88  Aligned_cols=121  Identities=39%  Similarity=0.652  Sum_probs=113.4

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCccc
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~  303 (355)
                      .....+.+.||||+|+++|+.+.++||+++.++|+|+|++.+.+|..+..|.+++..+.. +++-.++|+||+|..+++.
T Consensus        55 vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~  134 (209)
T KOG0080|consen   55 VDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERV  134 (209)
T ss_pred             EcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccc
Confidence            345688999999999999999999999999999999999999999999999999988775 6788999999999988899


Q ss_pred             CCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        304 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +..++...+++.+++-+++|||++.+||+..|+.|+.+|...
T Consensus       135 V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~t  176 (209)
T KOG0080|consen  135 VDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIET  176 (209)
T ss_pred             ccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999998754

>cd01898 Obg Obg subfamily

Probab=99.82  E-value=2.9e-19  Score=148.11  Aligned_cols=56  Identities=29%  Similarity=0.288  Sum_probs=39.5

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHHhh-cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ++|+++|+||+|+.....+. .....+... .+++++++||+++.|++++|++|.+++
T Consensus       114 ~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  170 (170)
T cd01898         114 EKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEGLDELLRKLAELL  170 (170)
T ss_pred             ccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence            56777788888875443332 222233333 367899999999999999999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04155 Arl3 Arl3 subfamily

Probab=99.82  E-value=5.6e-20  Score=152.91  Aligned_cols=98  Identities=17%  Similarity=0.411  Sum_probs=72.7

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      +..+.++|+++|++|||||||++++.+..+..                        +.++.++++.  .+..+  ...+.
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~------------------------~~~t~g~~~~--~i~~~--~~~~~   61 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDISH------------------------ITPTQGFNIK--TVQSD--GFKLN   61 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCCcc------------------------cCCCCCcceE--EEEEC--CEEEE
Confidence            44557999999999999999999998853311                        2334443332  22223  36789


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      +||+||+..+...+..+++.+|++++|+|+++..++.....|+..+
T Consensus        62 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~  107 (173)
T cd04155          62 VWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVEL  107 (173)
T ss_pred             EEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            9999999888888888889999999999999887787666555444

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0087|consensus

Probab=99.81  E-value=2.4e-19  Score=145.80  Aligned_cols=132  Identities=39%  Similarity=0.695  Sum_probs=119.0

Q ss_pred             cCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEE
Q psy15725        212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIML  291 (355)
Q Consensus       212 ~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil  291 (355)
                      +++.+...+.  ......+..+||||+|+++|+.+.+.||+++.++++|||++...+|+.+..|+.+++++...+++++|
T Consensus        47 IGvef~t~t~--~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimL  124 (222)
T KOG0087|consen   47 IGVEFATRTV--NVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIML  124 (222)
T ss_pred             eeEEEEeece--eecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            3444444332  24456788999999999999999999999999999999999999999999999999999989999999


Q ss_pred             EeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        292 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       292 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      |+||+||...+.+..+++..+++..+..++++||..+.||+++|+.++..|.+.
T Consensus       125 vGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~  178 (222)
T KOG0087|consen  125 VGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKI  178 (222)
T ss_pred             eecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHH
Confidence            999999988899999999999999999999999999999999999999888754

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.81  E-value=1.2e-18  Score=141.96  Aligned_cols=85  Identities=28%  Similarity=0.558  Sum_probs=64.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ++||+++|++|+|||||++++....+                       ...+.++++.++....+..++....+.+||+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   57 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKF-----------------------ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDT   57 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCC-----------------------cCcCCCCceeeeeEEEEEECCEEEEEEEEEC
Confidence            47999999999999999999998543                       3333455566666666666666678999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCC
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      ||+..+...+....+.+++++.++|+..
T Consensus        58 ~G~~~~~~~~~~~~~~~~~~i~~~d~~~   85 (161)
T TIGR00231        58 AGQEDYRAIRRLYYRAVESSLRVFDIVI   85 (161)
T ss_pred             CCcccchHHHHHHHhhhhEEEEEEEEee
Confidence            9988887777766777777777766543

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.81  E-value=2.4e-19  Score=139.59  Aligned_cols=100  Identities=29%  Similarity=0.505  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+|+|++|||||||+++|.+..+...                     ....++.+..+.............+.+||++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g   59 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDN---------------------SVPEETSEITIGVDVIVVDGDRQSLQFWDFGG   59 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS-----------------------------SSTTSCEEEEEEEETTEEEEEEEEEESS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCccc---------------------ccccccCCCcEEEEEEEecCCceEEEEEecCc
Confidence            799999999999999999999665410                     01112222233333445555555699999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ++.+...+...+..+|++++|||++++.+|+.+..++..+.
T Consensus        60 ~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~  100 (119)
T PF08477_consen   60 QEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLK  100 (119)
T ss_dssp             SHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHH
T ss_pred             cceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHH
Confidence            99888887778999999999999999999988755544443

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.80  E-value=6.8e-19  Score=159.86  Aligned_cols=94  Identities=18%  Similarity=0.184  Sum_probs=64.9

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      ++++++|+|+++..+++.+..|.+++..+..  .++|+++|+||+|+.....+.......+....+++++++||+++.||
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            4555666666655555666666666654432  46889999999998654433333333444455679999999999999


Q ss_pred             HHHHHHHHHHcCCCCC
Q psy15725        332 KQLFRRVAAALPGMDS  347 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~~  347 (355)
                      ++++++|.+.+.+.+.
T Consensus       317 ~eL~~~L~~~l~~~~~  332 (335)
T PRK12299        317 DELLRALWELLEEARR  332 (335)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            9999999999876543

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.80  E-value=2.9e-19  Score=145.89  Aligned_cols=148  Identities=24%  Similarity=0.382  Sum_probs=106.8

Q ss_pred             EEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   95 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   95 (355)
                      |+++|++|||||||++++.+..+...                       +.||++.++...  .  .....+.+||+||+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~-----------------------~~~t~~~~~~~~--~--~~~~~~~~~D~~g~   54 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSED-----------------------TIPTVGFNMRKV--T--KGNVTLKVWDLGGQ   54 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcC-----------------------ccCCCCcceEEE--E--ECCEEEEEEECCCC
Confidence            89999999999999999999554433                       445555554432  2  22378999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccc
Q psy15725         96 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDV  175 (355)
Q Consensus        96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (355)
                      ..+...+..+++.+|++++|+|+++..++.....|+..+...                                      
T Consensus        55 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~--------------------------------------   96 (159)
T cd04159          55 PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEK--------------------------------------   96 (159)
T ss_pred             HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC--------------------------------------
Confidence            999999999999999999999999998998877776665421                                      


Q ss_pred             cccCCCccEEEEEeecCCCCcccceehhh---hhhhhhccCeEEEEeeeeeccccceE
Q psy15725        176 RTERGSDVIIMLVGNKTDLSDKRQVSTEE---GERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       176 ~~~~~~~~piilv~nK~D~~~~~~v~~~~---~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                        ....++|+++|+||+|+.+........   ..........+++++|+.++.+++.+
T Consensus        97 --~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  152 (159)
T cd04159          97 --PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIV  152 (159)
T ss_pred             --hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHH
Confidence              112478999999999986543211100   01111223467889999988877653

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0086|consensus

Probab=99.80  E-value=3e-19  Score=137.04  Aligned_cols=126  Identities=43%  Similarity=0.681  Sum_probs=117.0

Q ss_pred             eeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725        220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  299 (355)
Q Consensus       220 sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  299 (355)
                      |-..+.+.+.+.++||||+|++.|++..+.||.++.+.++|+|+++..+|+.+..|+..++..+..++-|++++||.||.
T Consensus        48 SrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~  127 (214)
T KOG0086|consen   48 SRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD  127 (214)
T ss_pred             ceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence            34445566899999999999999999999999999999999999999999999999999988888999999999999999


Q ss_pred             CcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        300 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       300 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +.++++..++..+++...+.++++||++|+||+|.|-.+.+.|..+
T Consensus       128 ~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  128 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK  173 (214)
T ss_pred             hhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHH
Confidence            9999999999999999888999999999999999999998888754

>KOG0091|consensus

Probab=99.79  E-value=5.6e-19  Score=137.18  Aligned_cols=117  Identities=44%  Similarity=0.744  Sum_probs=107.2

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCce-EEEEeeCCCCCCcccCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVI-IMLVGNKTDLSDKRQVS  305 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iilv~nK~Dl~~~~~v~  305 (355)
                      ..+.+++|||+|++.|+++..+||.++-+++++||+++..+|++++.|.++..-+-. +.++ ..||+.|+||.+.++++
T Consensus        56 ~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt  135 (213)
T KOG0091|consen   56 YRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT  135 (213)
T ss_pred             cEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc
Confidence            468899999999999999999999999999999999999999999999988755543 4444 78999999999999999


Q ss_pred             HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      .+++..++..+|+.++++||++|.||++.|+.|.+.|-.
T Consensus       136 ~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~  174 (213)
T KOG0091|consen  136 AEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988754

>KOG0083|consensus

Probab=99.79  E-value=2.3e-19  Score=134.57  Aligned_cols=122  Identities=41%  Similarity=0.742  Sum_probs=114.6

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV  304 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v  304 (355)
                      .+...+.+++|||+|++.|++....+|.++|..++++|+.+..+|+.+..|+.++.++..+.+.+.+++||+|+.-++.+
T Consensus        42 ~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v  121 (192)
T KOG0083|consen   42 MDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAV  121 (192)
T ss_pred             cCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcc
Confidence            45568899999999999999999999999999999999999999999999999999998888999999999999878899


Q ss_pred             CHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      ..++...+++.+++|+.++||++|.||+..|-.|.+.+.+.+
T Consensus       122 ~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~  163 (192)
T KOG0083|consen  122 KRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK  163 (192)
T ss_pred             ccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999887553

>KOG0071|consensus

Probab=99.79  E-value=1.1e-18  Score=132.15  Aligned_cols=90  Identities=21%  Similarity=0.486  Sum_probs=77.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.++|+++|-.++||||++.++.-++                        +....||+|+++....    ++++.|++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~------------------------~~~~ipTvGFnvetVt----ykN~kfNvwd   67 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQ------------------------SVTTIPTVGFNVETVT----YKNVKFNVWD   67 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCC------------------------CcccccccceeEEEEE----eeeeEEeeee
Confidence            57999999999999999999998754                        2334688888877665    5789999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK  129 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~  129 (355)
                      ++|++..+.+|..|+.+..++|||+|..+++..+..+.
T Consensus        68 vGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~  105 (180)
T KOG0071|consen   68 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARN  105 (180)
T ss_pred             ccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHH
Confidence            99999999999999999999999999999766665544

>PRK04213 GTP-binding protein; Provisional

Probab=99.79  E-value=1.6e-18  Score=147.74  Aligned_cols=59  Identities=22%  Similarity=0.253  Sum_probs=43.6

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc---------EEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV---------MFIETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~---------~~~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      .++|+++|+||+|+.+.+   .+....+.+..++         +++++||++| ||++++++|.+.+...+.
T Consensus       129 ~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        129 LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            479999999999985433   2233334444333         5899999999 999999999999876543

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.78  E-value=9.4e-18  Score=148.38  Aligned_cols=257  Identities=15%  Similarity=0.131  Sum_probs=135.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|+|||||+++|+...........+.+++..+     +....+...  +.+.......+.++..++.+|||||
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~-----D~~~~E~~r--giti~~~~~~~~~~~~~i~liDTPG   73 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATM-----DFMEQERER--GITIQSAATTCFWKDHRINIIDTPG   73 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCcccc-----CCCccccCC--CcCeeccEEEEEECCEEEEEEECCC
Confidence            589999999999999999987332111111121111110     111122222  3333333444445567899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      +.+|...+...++.+|++++|+|+.+...-+... ..+.+..                                      
T Consensus        74 ~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~-~~~~~~~--------------------------------------  114 (270)
T cd01886          74 HVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTET-VWRQADR--------------------------------------  114 (270)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHH-HHHHHHH--------------------------------------
Confidence            9988888888999999999999998854332222 2222222                                      


Q ss_pred             ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe----EEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV----MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~----~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                            .++|+++++||.|+.+...  .....++...++.    ..+.+++..+      +.-++|......|..  .  
T Consensus       115 ------~~~p~ivviNK~D~~~a~~--~~~~~~l~~~l~~~~~~~~~Pisa~~~------f~g~vd~~~~~a~~~--~--  176 (270)
T cd01886         115 ------YNVPRIAFVNKMDRTGADF--FRVVEQIREKLGANPVPLQLPIGEEDD------FRGVVDLIEMKALYW--D--  176 (270)
T ss_pred             ------cCCCEEEEEECCCCCCCCH--HHHHHHHHHHhCCCceEEEeccccCCC------ceEEEEccccEEEec--c--
Confidence                  2789999999999864321  0111222222221    2333333321      222333332222210  0  


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC----CcccCCHHHHHH-----HHhhcCcEEE
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS----DKRQVSTEEGER-----KAKELNVMFI  321 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~~~v~~~~~~~-----~~~~~~~~~~  321 (355)
                       .....-.-..++.. .-.+...++...+.+..        +.+..+|.    +...++.++...     .....-+|+|
T Consensus       177 -~~~~~~~~~~~ip~-~~~~~~~~~r~~l~e~v--------ae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~~~~~PV~  246 (270)
T cd01886         177 -GELGEKIEETEIPE-DLLEEAEEAREELIETL--------AEFDDELMEKYLEGEEITEEEIKAAIRKGTIANKIVPVL  246 (270)
T ss_pred             -cCCCceeEEecCCH-HHHHHHHHHHHHHHHHH--------hcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCcEEEEE
Confidence             00001011122211 11222334444443321        11111121    123344444322     3334447999


Q ss_pred             EecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        322 ETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       322 ~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      ++||.++.||+++++.|.+++|.+
T Consensus       247 ~gSa~~~~Gi~~lld~i~~~~p~p  270 (270)
T cd01886         247 CGSAFKNKGVQPLLDAVVDYLPSP  270 (270)
T ss_pred             eCcCCCCcCHHHHHHHHHHhcCCC
Confidence            999999999999999999999863

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01878 HflX HflX subfamily

Probab=99.78  E-value=2.2e-18  Score=147.32  Aligned_cols=84  Identities=20%  Similarity=0.235  Sum_probs=62.0

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      +|++++|+|.+++.+......|.+.+......++|+++|+||+|+.+.....     ......+.+++++||++|.|+++
T Consensus       121 ~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~  195 (204)
T cd01878         121 ADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGEGLDE  195 (204)
T ss_pred             CCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCCCHHH
Confidence            6677888888877776666666666555443578999999999986443221     23344557899999999999999


Q ss_pred             HHHHHHHHc
Q psy15725        334 LFRRVAAAL  342 (355)
Q Consensus       334 l~~~l~~~i  342 (355)
                      ++++|.+.+
T Consensus       196 l~~~L~~~~  204 (204)
T cd01878         196 LLEAIEELL  204 (204)
T ss_pred             HHHHHHhhC
Confidence            999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0079|consensus

Probab=99.78  E-value=1.2e-18  Score=133.14  Aligned_cols=121  Identities=38%  Similarity=0.671  Sum_probs=113.5

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV  304 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v  304 (355)
                      .+.+.+.+.|||++|++.|+.+.+.++++.+++++|+|+++.++|..+.+|++++.+.+ +.+|-++|+||.|..+.+.+
T Consensus        52 i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV  130 (198)
T KOG0079|consen   52 INGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVV  130 (198)
T ss_pred             cCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceee
Confidence            44678899999999999999999999999999999999999999999999999999887 68999999999999988999


Q ss_pred             CHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      ..+++..++..-++.+|++||++++|++..|..|.+++....
T Consensus       131 ~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  131 DTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             ehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998876543

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.78  E-value=4.3e-18  Score=165.81  Aligned_cols=108  Identities=15%  Similarity=0.181  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCc--cccccceeeeeeeeee-----cCcEEE
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-----EDRTVR   86 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~-----~~~~~~   86 (355)
                      -||+++|+.++|||||++||+...-.-...           .+. ..+.+.  ...+.|+++....+.+     ++..+.
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~-----------~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~   71 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISER-----------EMR-EQVLDSMDLERERGITIKAQAVRLNYKAKDGETYV   71 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccc-----------ccc-ccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEE
Confidence            489999999999999999999843110000           000 001000  0123344444443333     455689


Q ss_pred             EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHH
Q psy15725         87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  133 (355)
Q Consensus        87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~  133 (355)
                      +++|||||+.+|...+..+++.+|++++|||+++..+++....|...
T Consensus        72 l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~  118 (595)
T TIGR01393        72 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLA  118 (595)
T ss_pred             EEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHH
Confidence            99999999999999999999999999999999987777766666543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.78  E-value=4.4e-18  Score=151.41  Aligned_cols=256  Identities=15%  Similarity=0.183  Sum_probs=135.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +|+++|++|+|||||+++++.........+.+..++..      ..+.. .....+.  .......+.+....+.+||||
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~------~d~~~~e~~r~~t--i~~~~~~~~~~~~~i~liDtP   72 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTV------SDYDPEEIKRKMS--ISTSVAPLEWKGHKINLIDTP   72 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCccc------CCCCHHHHhhccc--ccceeEEEEECCEEEEEEECc
Confidence            58999999999999999998743222111111111100      01111 1111222  222223334455789999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |+.+|...+...++.+|++++|+|+++.........|. .+..                                     
T Consensus        73 G~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~-------------------------------------  114 (268)
T cd04170          73 GYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE-------------------------------------  114 (268)
T ss_pred             CHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH-------------------------------------
Confidence            99988888888999999999999999866554443332 2221                                     


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEee--eeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS--AKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~s--a~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                             .++|+++++||+|.....  .......+...++.++..+.  ...+.+...    +.|......+...     
T Consensus       115 -------~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~----~vd~~~~~~~~~~-----  176 (268)
T cd04170         115 -------AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLPIGEGDDFKG----VVDLLTEKAYIYS-----  176 (268)
T ss_pred             -------cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEecccCCCceeE----EEEcccCEEEEcc-----
Confidence                   268999999999986532  11223333344454444443  333333322    2332222111100     


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC----CcccCCHHH-----HHHHHhhcCcEEEE
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS----DKRQVSTEE-----GERKAKELNVMFIE  322 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~~~v~~~~-----~~~~~~~~~~~~~~  322 (355)
                       .... .-..++.. .-.....++...+.+...        .+.-++.    +...+..++     ..........|+++
T Consensus       177 -~~~~-~~~~~~p~-~~~~~~~~~~~~l~e~~a--------~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~~~~pv~~  245 (268)
T cd04170         177 -PGAP-SEEIEIPE-ELKEEVAEAREELLEAVA--------ETDDELMEKYLEGGELTEEELHAGLRRALRAGLLVPVLC  245 (268)
T ss_pred             -CCCc-ceeccCCH-HHHHHHHHHHHHHHHHHh--------hCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence             0000 00011111 111122223333322110        0000111    112333333     33344444479999


Q ss_pred             ecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        323 TSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       323 ~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +||+++.|++++++.+.+++|.+
T Consensus       246 gSa~~~~G~~~ll~~~~~~~p~p  268 (268)
T cd04170         246 GSALTNIGVRELLDALVHLLPSP  268 (268)
T ss_pred             eeCCCCcCHHHHHHHHHHhCCCC
Confidence            99999999999999999999863

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.78  E-value=3.4e-18  Score=147.77  Aligned_cols=123  Identities=45%  Similarity=0.711  Sum_probs=99.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||+++|....+...+.                       +|++..+...........+.+.+||
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-----------------------~t~~~~~~~~~~~~~~~~~~~~~~D   60 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-----------------------PTIGNLDPAKTIEPYRRNIKLQLWD   60 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCC-----------------------CceeeeeEEEEEEeCCCEEEEEeec
Confidence            34899999999999999999999966655544                       4445555555555555578899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchh-hhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSF-HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |+|+++|+.++..++.+++++++|||..+..++ +....|..++....                                
T Consensus        61 t~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~--------------------------------  108 (219)
T COG1100          61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA--------------------------------  108 (219)
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhC--------------------------------
Confidence            999999999999999999999999999995555 55788998887542                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKR  198 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~  198 (355)
                               ....|+++|+||+|+....
T Consensus       109 ---------~~~~~iilv~nK~Dl~~~~  127 (219)
T COG1100         109 ---------PDDVPILLVGNKIDLFDEQ  127 (219)
T ss_pred             ---------CCCceEEEEecccccccch
Confidence                     1379999999999997653

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.77  E-value=1.6e-18  Score=146.94  Aligned_cols=158  Identities=18%  Similarity=0.256  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh--cCCCCCce--eeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY--DSFDNTYQ--ATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      .+|+++|++|||||||+++|++  +.+...+.  +++            .. .....++.+.++......++++...+.+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~------------~~-~~~~e~~~g~t~~~~~~~~~~~~~~~~l   69 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERV------------MD-SNDLERERGITILAKNTAVTYKDTKINI   69 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccc------------cc-cchhHHhcccccccceeEEEECCEEEEE
Confidence            3799999999999999999997  33333210  000            00 0011234555555565666667789999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||+++|...+..+++.+|++++|||+++.. +.....|+..+..                                 
T Consensus        70 ~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---------------------------------  115 (194)
T cd01891          70 VDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---------------------------------  115 (194)
T ss_pred             EECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---------------------------------
Confidence            999999999999999999999999999998742 2333333333321                                 


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccce-ehhhhhhhh-------hccCeEEEEeeeeeccccce
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-STEEGERKA-------KELNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v-~~~~~~~~~-------~~~~~~~~~~sa~~~~~v~~  229 (355)
                                 .++|+++|+||+|+...+.. ...+...+.       ...+.+++.+|+.++.+..+
T Consensus       116 -----------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~  172 (194)
T cd01891         116 -----------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN  172 (194)
T ss_pred             -----------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence                       26899999999998643321 112222222       23467889999988877644

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04171 SelB SelB subfamily

Probab=99.77  E-value=2.2e-18  Score=141.70  Aligned_cols=149  Identities=19%  Similarity=0.154  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +.|+++|++|||||||+++|++...                    +.+.....+++..+.......+.. ...+.+||||
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~--------------------~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~Dtp   59 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIET--------------------DRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVP   59 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCccc--------------------ccchhhhccCceEEeeeEEEEecC-CcEEEEEECC
Confidence            4699999999999999999986321                    111111222222222222333331 3579999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |+++|......+++.+|++++|+|+++.   ++++.+.    .++..                                 
T Consensus        60 G~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~---------------------------------  102 (164)
T cd04171          60 GHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL---------------------------------  102 (164)
T ss_pred             ChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh---------------------------------
Confidence            9999887777788899999999999873   2332221    11110                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccc--eehhhhhhhhhc---cCeEEEEeeeeeccccceE
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKE---LNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~--v~~~~~~~~~~~---~~~~~~~~sa~~~~~v~~i  230 (355)
                                ...|+++++||+|+.+...  ....+..+....   .+.+++++|+..+.+++.+
T Consensus       103 ----------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (164)
T cd04171         103 ----------GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL  157 (164)
T ss_pred             ----------CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence                      1248999999999865421  111222222222   3578999999998887653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK15494 era GTPase Era; Provisional

Probab=99.77  E-value=1e-17  Score=153.27  Aligned_cols=85  Identities=16%  Similarity=0.292  Sum_probs=53.9

Q ss_pred             CCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC--cEEEEecCCCCC
Q psy15725        253 DSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGY  329 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~SA~~~~  329 (355)
                      ++|++++|+|.++.  +.... .|+..+..   .+.|.++|+||+|+.+.   ............+  .+++++||++|.
T Consensus       131 ~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~  202 (339)
T PRK15494        131 SADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGK  202 (339)
T ss_pred             hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence            35666666665432  22322 23344433   34566788888887532   1223333333333  589999999999


Q ss_pred             CHHHHHHHHHHHcCCC
Q psy15725        330 NVKQLFRRVAAALPGM  345 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~  345 (355)
                      |++++|++|.+.++..
T Consensus       203 gv~eL~~~L~~~l~~~  218 (339)
T PRK15494        203 NIDGLLEYITSKAKIS  218 (339)
T ss_pred             CHHHHHHHHHHhCCCC
Confidence            9999999999998864

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.77  E-value=8.8e-18  Score=137.32  Aligned_cols=83  Identities=20%  Similarity=0.200  Sum_probs=53.7

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      ++++++++|.++....   ..+...+..   .++|+++++||+|+.+...+... ...+.+..+++++++||.+|.|+++
T Consensus        75 ~d~vi~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~  147 (158)
T cd01879          75 PDLIVNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDE  147 (158)
T ss_pred             CcEEEEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHH
Confidence            4555555555543221   122223322   36788888888887654444332 3355556678999999999999999


Q ss_pred             HHHHHHHHcC
Q psy15725        334 LFRRVAAALP  343 (355)
Q Consensus       334 l~~~l~~~i~  343 (355)
                      ++++|.+...
T Consensus       148 l~~~l~~~~~  157 (158)
T cd01879         148 LKDAIAELAE  157 (158)
T ss_pred             HHHHHHHHhc
Confidence            9999988743

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.77  E-value=5.2e-19  Score=142.17  Aligned_cols=129  Identities=19%  Similarity=0.273  Sum_probs=90.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||+++|.+..+                         .+.+|++.++.            -.+|||||
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~-------------------------~~~~t~~~~~~------------~~~iDt~G   44 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI-------------------------LYKKTQAVEYN------------DGAIDTPG   44 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc-------------------------ccccceeEEEc------------CeeecCch
Confidence            899999999999999999987432                         11223332221            15899999


Q ss_pred             cc-----cccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         95 QE-----RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        95 ~~-----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      +.     .|..+.. .++++|++++|||++++.++.. ..|....                                   
T Consensus        45 ~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-----------------------------------   87 (142)
T TIGR02528        45 EYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF-----------------------------------   87 (142)
T ss_pred             hhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-----------------------------------
Confidence            72     3444433 4789999999999999988865 2343221                                   


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeeccccceE
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV  230 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~i  230 (355)
                                  ..|+++|+||+|+.+ +....++..++++..+. +++++|+.++.+++.+
T Consensus        88 ------------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  136 (142)
T TIGR02528        88 ------------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEAL  136 (142)
T ss_pred             ------------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHH
Confidence                        239999999999864 22334444555555555 7899999999887754

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.76  E-value=1.5e-17  Score=137.49  Aligned_cols=85  Identities=16%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEecC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTA   93 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~   93 (355)
                      .|+++|++|||||||+++|....+...+.+                       +...+........+ +....+.+||||
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~-----------------------~~t~~~~~~~~~~~~~~~~~~~iiDtp   58 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAG-----------------------GITQHIGAFEVPAEVLKIPGITFIDTP   58 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCC-----------------------CeEEeeccEEEecccCCcceEEEEeCC
Confidence            489999999999999999998654332111                       11111111122222 134678999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNAN  122 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~  122 (355)
                      |+..|...+...+..+|++++|+|+++..
T Consensus        59 G~~~~~~~~~~~~~~~d~il~v~d~~~~~   87 (168)
T cd01887          59 GHEAFTNMRARGASLTDIAILVVAADDGV   87 (168)
T ss_pred             CcHHHHHHHHHHHhhcCEEEEEEECCCCc
Confidence            99888888888888999999999998743

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00436 era GTP-binding protein Era

Probab=99.76  E-value=9.2e-18  Score=149.41  Aligned_cols=89  Identities=18%  Similarity=0.077  Sum_probs=62.2

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g  330 (355)
                      ..+|++++|+|+++..+.+  ..+...+..   .+.|+++|+||+|+...... ......+....++ +++++||++|.|
T Consensus        78 ~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~g  151 (270)
T TIGR00436        78 GGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDN  151 (270)
T ss_pred             hhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCC
Confidence            4578888888887765543  233333433   47899999999998643322 1222333333344 899999999999


Q ss_pred             HHHHHHHHHHHcCCCC
Q psy15725        331 VKQLFRRVAAALPGMD  346 (355)
Q Consensus       331 v~~l~~~l~~~i~~~~  346 (355)
                      +++++++|.+.++...
T Consensus       152 i~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       152 TSFLAAFIEVHLPEGP  167 (270)
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            9999999999998653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0095|consensus

Probab=99.75  E-value=2.8e-18  Score=131.25  Aligned_cols=123  Identities=40%  Similarity=0.676  Sum_probs=113.7

Q ss_pred             eccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc
Q psy15725        223 AGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR  302 (355)
Q Consensus       223 ~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  302 (355)
                      ...+.+.+.++||||+|+++|+++..+||+.++++|+++|++=..+|+-+++|+.++.+++..++--|+|+||.|+.+.+
T Consensus        49 vev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drr  128 (213)
T KOG0095|consen   49 VEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRR  128 (213)
T ss_pred             EEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhh
Confidence            34567899999999999999999999999999999999999999999999999999999988888899999999999889


Q ss_pred             cCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       303 ~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      ++..+.+.++.+.....++++||++..||+.+|..++-.+...
T Consensus       129 evp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~  171 (213)
T KOG0095|consen  129 EVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISE  171 (213)
T ss_pred             hhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence            9999999999988888999999999999999999988766543

>KOG0075|consensus

Probab=99.75  E-value=2.1e-18  Score=131.64  Aligned_cols=150  Identities=23%  Similarity=0.405  Sum_probs=110.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      .++.+.++|-.++|||||+|.+..+.|.+...                       ||+|++..    .++...+.+.+||
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmi-----------------------ptvGfnmr----k~tkgnvtiklwD   71 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMI-----------------------PTVGFNMR----KVTKGNVTIKLWD   71 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhc-----------------------ccccceeE----EeccCceEEEEEe
Confidence            35789999999999999999998866655544                       44565433    3446778999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      .||+..|+..|..|+++++++++|+|+++++.+..-+..+..+.                                    
T Consensus        72 ~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL------------------------------------  115 (186)
T KOG0075|consen   72 LGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLL------------------------------------  115 (186)
T ss_pred             cCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHh------------------------------------
Confidence            99999999999999999999999999999988877666555553                                    


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVK  228 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~  228 (355)
                          ......++|+++.|||.|++..-.   +.......-.....+.++.+|.+...|++
T Consensus       116 ----~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid  171 (186)
T KOG0075|consen  116 ----DKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNID  171 (186)
T ss_pred             ----cchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence                234567999999999999875421   11111112222334567777777666655

>KOG1673|consensus

Probab=99.75  E-value=2.5e-18  Score=132.43  Aligned_cols=159  Identities=25%  Similarity=0.538  Sum_probs=131.3

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ...+-.+||.++|++..|||||+-+.+++.                       ++..+..+.|.++..+.+.+.+-.+.+
T Consensus        15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~-----------------------~de~~~q~~GvN~mdkt~~i~~t~Isf   71 (205)
T KOG1673|consen   15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNE-----------------------YDEEYTQTLGVNFMDKTVSIRGTDISF   71 (205)
T ss_pred             cccceEEEEEeecccccCceeeehhhhcch-----------------------hHHHHHHHhCccceeeEEEecceEEEE
Confidence            356778999999999999999999999844                       445567788999999999999999999


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      .+||++|++++....+....++-+++|+||++.+.++..+..|+++.+...                             
T Consensus        72 SIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-----------------------------  122 (205)
T KOG1673|consen   72 SIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN-----------------------------  122 (205)
T ss_pred             EEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-----------------------------
Confidence            999999999999999999999999999999999999999999999986532                             


Q ss_pred             CccccccccccCCCccEEEEEeecCCCC----cc-cceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLS----DK-RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~----~~-~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                  ..-+| ++||+|+|+-    .+ ...-..+...+++-.+.+.+.+|+....|+++++
T Consensus       123 ------------ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF  178 (205)
T KOG1673|consen  123 ------------KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF  178 (205)
T ss_pred             ------------Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence                        22455 5789999962    21 1122245567778888999999999888887653

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.75  E-value=6.2e-17  Score=155.37  Aligned_cols=269  Identities=16%  Similarity=0.145  Sum_probs=142.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ....+|+++|+.|+|||||+++|+...-.....+++.+++.-  ......+.. .....++++......++++...+++|
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~--~~~~~D~~~-~E~~rgiSi~~~~~~~~~~~~~inli   84 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSG--RHATSDWME-MEKQRGISVTSSVMQFPYRDCLINLL   84 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccC--ccccCCCcH-HHHhhCCceeeeeEEEEECCEEEEEE
Confidence            456799999999999999999998633222222333211100  000011111 11233455555555666677899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||+.+|.......++.+|++|+|+|+++..... ...+++....                                  
T Consensus        85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~----------------------------------  129 (526)
T PRK00741         85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL----------------------------------  129 (526)
T ss_pred             ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh----------------------------------
Confidence            99999999888888899999999999998853222 2333333322                                  


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                .++|+++++||+|+.....  .....++...++.+......+.+.+.  -+.-++|......+...... 
T Consensus       130 ----------~~iPiiv~iNK~D~~~a~~--~~~l~~i~~~l~~~~~p~~~Pig~~~--~f~Gvvdl~~~~~~~~~~~~-  194 (526)
T PRK00741        130 ----------RDTPIFTFINKLDRDGREP--LELLDEIEEVLGIACAPITWPIGMGK--RFKGVYDLYNDEVELYQPGE-  194 (526)
T ss_pred             ----------cCCCEEEEEECCcccccCH--HHHHHHHHHHhCCCCeeEEeccccCC--ceeEEEEeecceeeecccCC-
Confidence                      3799999999999865331  11223333444544444443333321  12223332221111000000 


Q ss_pred             ccCCcEEEEEEeCCCcccHHH-HH-HHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQ-TS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~-~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                      -......-.+.+.++.. ++. +. ....++.+..             ++.. ..........+....-+|++++||++|
T Consensus       195 ~~~~~~~e~~~~~dd~l-le~~l~~~~~~~l~~~l-------------el~~-~~~~~~~~~~~~~~~~~PV~~GSA~~n  259 (526)
T PRK00741        195 GHTIQEVEIIKGLDNPE-LDELLGEDLAEQLREEL-------------ELVQ-GASNEFDLEAFLAGELTPVFFGSALNN  259 (526)
T ss_pred             CCcceeeeeccCCCHHH-HHHHhcccHHHHHHHHH-------------Hhhh-hcccchhHHHHhcCCeEEEEEeecccC
Confidence            00000111112222111 110 00 0011111110             0100 011111223444444579999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~~  347 (355)
                      .||+++++.|.+++|.+..
T Consensus       260 ~Gv~~LLd~i~~~~P~P~~  278 (526)
T PRK00741        260 FGVQEFLDAFVEWAPAPQP  278 (526)
T ss_pred             cCHHHHHHHHHHHCCCCCc
Confidence            9999999999999998854

>KOG3883|consensus

Probab=99.75  E-value=2.6e-17  Score=126.55  Aligned_cols=153  Identities=24%  Similarity=0.354  Sum_probs=119.3

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-cCcEEEEEEE
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLW   90 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~   90 (355)
                      +-+||+|+|..+||||+++.+++.++...                     -....||+. +.+...+.- ++-.-.+.++
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~---------------------~~e~~pTiE-DiY~~svet~rgarE~l~ly   65 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVP---------------------GTELHPTIE-DIYVASVETDRGAREQLRLY   65 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCC---------------------CCccccchh-hheeEeeecCCChhheEEEe
Confidence            55899999999999999999999865221                     123445555 333333332 3334568999


Q ss_pred             ecCCcccc-cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         91 DTAGQERF-RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        91 D~~g~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||.|.+.. ..+...++.-+|++++||+..+++||+.+.-+-.+|.+.                                
T Consensus        66 DTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~--------------------------------  113 (198)
T KOG3883|consen   66 DTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKH--------------------------------  113 (198)
T ss_pred             ecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhc--------------------------------
Confidence            99998887 557777888899999999999999998876655555433                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  226 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~  226 (355)
                              .+...+||++.+||+|+..++.++.+....++....+...++++....+
T Consensus       114 --------KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~s  162 (198)
T KOG3883|consen  114 --------KDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPS  162 (198)
T ss_pred             --------cccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchh
Confidence                    4456899999999999999999999999999999999999998876443

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.75  E-value=4.6e-17  Score=137.11  Aligned_cols=102  Identities=25%  Similarity=0.284  Sum_probs=67.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|.+|+|||||+|++.+........+++.+      .+. ........+++....  .....+.....+.+|||||
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~liDtpG   71 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE------TFL-DVLKEERERGITIKS--GVATFEWPDRRVNFIDTPG   71 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec------ccc-cCCHHHHHcCCCeec--ceEEEeeCCEEEEEEeCCC
Confidence            4899999999999999999998766554443321      000 000011111111121  1222223356899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhh
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      +..+...+..+++.+|++++|+|..++.+..
T Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~  102 (189)
T cd00881          72 HEDFSSEVIRGLSVSDGAILVVDANEGVQPQ  102 (189)
T ss_pred             cHHHHHHHHHHHHhcCEEEEEEECCCCCcHH
Confidence            9988888888899999999999998865443

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.74  E-value=3.4e-17  Score=132.07  Aligned_cols=90  Identities=47%  Similarity=0.842  Sum_probs=70.4

Q ss_pred             EEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCccc
Q psy15725         18 FLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   97 (355)
Q Consensus        18 vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   97 (355)
                      ++|++|+|||||++++.+....                      .....++. .++.............+.+||+||...
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~----------------------~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~   57 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFV----------------------PEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQER   57 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcC----------------------Ccccccch-hheeeEEEEECCEEEEEEEEecCChHH
Confidence            5899999999999999985431                      12223333 455555555556678999999999988


Q ss_pred             ccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725         98 FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  130 (355)
Q Consensus        98 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  130 (355)
                      +.......++.+|++++|+|++++.++.....|
T Consensus        58 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~   90 (157)
T cd00882          58 FRSLRRLYYRGADGIILVYDVTDRESFENVKEW   90 (157)
T ss_pred             HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHH
Confidence            888778888999999999999998888777665

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.74  E-value=3.3e-17  Score=148.78  Aligned_cols=57  Identities=26%  Similarity=0.241  Sum_probs=42.8

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      .++|+++|+||+|+..... .......+.+..+++++++||+++.||++++++|.+.+
T Consensus       272 ~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       272 AEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             ccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            4678888888888764432 22333445555567899999999999999999999865

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.74  E-value=1.1e-17  Score=136.78  Aligned_cols=84  Identities=17%  Similarity=0.120  Sum_probs=56.3

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc--EEEEecCCCCCCH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV--MFIETSAKAGYNV  331 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--~~~~~SA~~~~gv  331 (355)
                      +|++++|+|.++..++..  .|+..+.    .++|+++++||+|+...   ..+....+++..++  |++++||++|.||
T Consensus        65 ad~il~v~d~~~~~s~~~--~~~~~~~----~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi  135 (158)
T PRK15467         65 VDMLIYVHGANDPESRLP--AGLLDIG----VSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSV  135 (158)
T ss_pred             CCEEEEEEeCCCcccccC--HHHHhcc----CCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence            555566666555443311  2322221    36789999999998532   23444555556664  9999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q psy15725        332 KQLFRRVAAALPGMD  346 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~  346 (355)
                      +++|++|.+.+....
T Consensus       136 ~~l~~~l~~~~~~~~  150 (158)
T PRK15467        136 QQLVDYLASLTKQEE  150 (158)
T ss_pred             HHHHHHHHHhchhhh
Confidence            999999999887554

>TIGR00503 prfC peptide chain release factor 3

Probab=99.74  E-value=1.7e-16  Score=152.48  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=74.7

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      +..+..+|+|+|++++|||||+++|+...-.....+++.+....  +.....+. ......++++......++++...++
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~--~~t~~D~~-~~E~~rgisi~~~~~~~~~~~~~in   83 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQ--RHAKSDWM-EMEKQRGISITTSVMQFPYRDCLVN   83 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceecccccc--ccccCCCC-HHHHhcCCcEEEEEEEEeeCCeEEE
Confidence            34567899999999999999999997633222222333211110  00011111 1122345566666666777789999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      +|||||+.+|.......++.+|++++|+|+.+.
T Consensus        84 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g  116 (527)
T TIGR00503        84 LLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG  116 (527)
T ss_pred             EEECCChhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence            999999999888777889999999999999874

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.74  E-value=4.6e-16  Score=135.07  Aligned_cols=52  Identities=29%  Similarity=0.246  Sum_probs=40.2

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      .-+|+++|+||+|+.+.     .+...++..  .+++++||++|.|++++|+.|.+.+.
T Consensus       175 ~y~p~iiV~NK~Dl~~~-----~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         175 VYIPCLYVYNKIDLISI-----EELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             eEeeEEEEEECccCCCH-----HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence            46899999999998533     233334432  46899999999999999999998764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01889 SelB_euk SelB subfamily

Probab=99.74  E-value=2.9e-17  Score=138.92  Aligned_cols=30  Identities=23%  Similarity=0.099  Sum_probs=27.1

Q ss_pred             cCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        316 LNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       316 ~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .+++++++||++|.|+++++++|..+|+.+
T Consensus       159 ~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         159 KNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             CCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            357899999999999999999999999864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.73  E-value=1.9e-16  Score=145.09  Aligned_cols=85  Identities=26%  Similarity=0.269  Sum_probs=60.6

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      .++|++++|+|.+++.+.+.+..|...+......++|+++|+||+|+.....+     .... ....+++++||++|.|+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCCCCH
Confidence            44788888888888777666655555554433357899999999998643221     1111 12346899999999999


Q ss_pred             HHHHHHHHHHc
Q psy15725        332 KQLFRRVAAAL  342 (355)
Q Consensus       332 ~~l~~~l~~~i  342 (355)
                      ++++++|.+.+
T Consensus       341 ~eL~~~I~~~~  351 (351)
T TIGR03156       341 DLLLEAIAERL  351 (351)
T ss_pred             HHHHHHHHhhC
Confidence            99999998753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.73  E-value=1.5e-17  Score=160.88  Aligned_cols=95  Identities=19%  Similarity=0.219  Sum_probs=65.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee------------eec
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM------------YLE   81 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~------------~~~   81 (355)
                      --|+++|++++|||||+++|.+..+....++.                   .+++++..+.....            .++
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~gg-------------------iTq~iG~~~v~~~~~~~~~~~~~~~~~v~   65 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGG-------------------ITQHIGATEIPMDVIEGICGDLLKKFKIR   65 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCc-------------------eecccCeeEeeeccccccccccccccccc
Confidence            35999999999999999999986553332221                   22333333322111            111


Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCC---cchhhhH
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN---ANSFHQT  127 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~  127 (355)
                      .+...+.+|||||++.|..++..+++.+|++++|||+++   +++++.+
T Consensus        66 ~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i  114 (590)
T TIGR00491        66 LKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEAL  114 (590)
T ss_pred             cccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH
Confidence            112248899999999999999999999999999999997   4444443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0097|consensus

Probab=99.72  E-value=4.5e-17  Score=123.46  Aligned_cols=126  Identities=41%  Similarity=0.700  Sum_probs=113.9

Q ss_pred             CeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEE
Q psy15725        213 NVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLV  292 (355)
Q Consensus       213 ~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv  292 (355)
                      +..++++|      ...+.+.|||++|++.|+...+++|+++.+.+.|+|++.+.++.++..|+....+.-.++..|+++
T Consensus        49 gtriievs------gqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~li  122 (215)
T KOG0097|consen   49 GTRIIEVS------GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLI  122 (215)
T ss_pred             ceeEEEec------CcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEe
Confidence            44455554      357899999999999999999999999999999999999999999999998887766678899999


Q ss_pred             eeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        293 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       293 ~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +||.|+.+.+.+..++++++++..|..++++||++|.||++.|-.-.++|..
T Consensus       123 gnkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyq  174 (215)
T KOG0097|consen  123 GNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQ  174 (215)
T ss_pred             cchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888887753

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.72  E-value=1.6e-16  Score=155.10  Aligned_cols=110  Identities=18%  Similarity=0.202  Sum_probs=71.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-----cCcEEEE
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-----EDRTVRL   87 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~   87 (355)
                      -.+|+++|+.++|||||+.+|+...-.-...       ..-..+ .+....+  .+.|+++......+     +++.+.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~-------~~~~~~-lD~~~~E--rerGiTi~~~~v~~~~~~~dg~~~~l   76 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSER-------EMKAQV-LDSMDLE--RERGITIKAQAVRLNYKAKDGETYIL   76 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCccc-------cccccc-ccCchHH--hhcCCcccccEEEEEEEccCCCcEEE
Confidence            3589999999999999999998743110000       000000 0111111  12233333332222     4557899


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHH
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID  132 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~  132 (355)
                      ++|||||+.+|...+..+++.+|++++|+|+++....+....|..
T Consensus        77 nLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~  121 (600)
T PRK05433         77 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL  121 (600)
T ss_pred             EEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
Confidence            999999999999989999999999999999998766655555543

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.72  E-value=4.5e-17  Score=137.26  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +..+|+++|+.++|||||+++|+.............+.+    ++ .+....+....+..+.....+........+.++|
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~----~~-~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iD   76 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKN----AF-LDKHPEERERGITIDLSFISFEKNENNRKITLID   76 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHH----CH-HHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEE
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhcccccccccccccc----cc-ccccchhhhcccccccccccccccccccceeecc
Confidence            357999999999999999999998542211100000000    00 0111111112222222222222125567899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSF  124 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~  124 (355)
                      |||+..|...+...+..+|++|+|+|+.+....
T Consensus        77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~  109 (188)
T PF00009_consen   77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQP  109 (188)
T ss_dssp             ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTH
T ss_pred             cccccceeecccceecccccceeeeeccccccc
Confidence            999999988888889999999999999986443

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.71  E-value=1.6e-16  Score=135.47  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             EEEEEEecCCcccccccccccccCccEEEEEEECCC
Q psy15725         85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      .++.+|||||++.|...+...+..+|++++|+|+++
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~  118 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE  118 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC
Confidence            679999999998887777777778899999988876

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0096|consensus

Probab=99.71  E-value=5.5e-17  Score=129.51  Aligned_cols=158  Identities=29%  Similarity=0.538  Sum_probs=129.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.++++++|+.|.||||+++|.+.+                       .+..++.+|+|.......+.-+.+.+++..|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltg-----------------------eFe~~y~at~Gv~~~pl~f~tn~g~irf~~w   64 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTG-----------------------EFEKTYPATLGVEVHPLLFDTNRGQIRFNVW   64 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcc-----------------------cceecccCcceeEEeeeeeecccCcEEEEee
Confidence            57899999999999999999999994                       4555566677888777777666677999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||.|++.+..++..++-++.+++++||+..+-+..++..|.+.+.+.+                                
T Consensus        65 dtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--------------------------------  112 (216)
T KOG0096|consen   65 DTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--------------------------------  112 (216)
T ss_pred             ecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--------------------------------
Confidence            999999999999999999999999999999999999999999987653                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEE
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLW  235 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~  235 (355)
                                .++||++.|||.|.....  .......+....++.++++|+..+-|.+.-+..+.
T Consensus       113 ----------~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen  113 ----------ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             ----------cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence                      379999999999976532  11222334455678899999998888887665443

>PRK13351 elongation factor G; Reviewed

Probab=99.70  E-value=4.4e-16  Score=155.82  Aligned_cols=273  Identities=16%  Similarity=0.117  Sum_probs=140.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ...||+|+|+.|+|||||+++|+...-.......+..++ +.    .+....+  ...+.+.......+.++...+++||
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~-~~----~d~~~~e--~~r~~ti~~~~~~~~~~~~~i~liD   79 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGT-TV----TDWMPQE--QERGITIESAATSCDWDNHRINLID   79 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCc-cc----CCCCHHH--HhcCCCcccceEEEEECCEEEEEEE
Confidence            457999999999999999999987431111111110000 00    0001111  1122222223333445568999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||+.+|...+..+++.+|++++|+|+++..+++....|.. +..                                   
T Consensus        80 tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~~-----------------------------------  123 (687)
T PRK13351         80 TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-ADR-----------------------------------  123 (687)
T ss_pred             CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHh-----------------------------------
Confidence            99999999989999999999999999999877766555532 221                                   


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                               .++|+++++||+|+.....  .....++...++.....+..+.+.+  ..+..+.|......+  .|... 
T Consensus       124 ---------~~~p~iiviNK~D~~~~~~--~~~~~~i~~~l~~~~~~~~~P~~~~--~~~~g~id~~~~~~~--~~~~~-  187 (687)
T PRK13351        124 ---------YGIPRLIFINKMDRVGADL--FKVLEDIEERFGKRPLPLQLPIGSE--DGFEGVVDLITEPEL--HFSEG-  187 (687)
T ss_pred             ---------cCCCEEEEEECCCCCCCCH--HHHHHHHHHHHCCCeEEEEeccccC--CceEEEEECccceEE--ecccC-
Confidence                     2789999999999865321  1222233333444333332222222  123334443322211  11110 


Q ss_pred             cCCcEEEEEEeCCCcccHH-HHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFH-QTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~-~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                      .....+ ...++.  .++. .+......+.+...  ++.-.--.++...+ +.+.+.......+.....+|++++||++|
T Consensus       188 ~~~~~~-~~~~~~--~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l-~~~~l~~~~~~~~~~~~~~PV~~gSA~~~  263 (687)
T PRK13351        188 DGGSTV-EEGPIP--EELLEEVEEAREKLIEALAEFDDELLELYLEGEEL-SAEQLRAPLREGTRSGHLVPVLFGSALKN  263 (687)
T ss_pred             CCCCce-EEccCC--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCEEEEEecccCcC
Confidence            001111 111111  1121 11122222211110  00000000000111 12222222233333444469999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~~  347 (355)
                      .||+.|++.|...+|.+..
T Consensus       264 ~Gv~~LLd~I~~~lPsP~~  282 (687)
T PRK13351        264 IGIEPLLDAVVDYLPSPLE  282 (687)
T ss_pred             ccHHHHHHHHHHHCCChhh
Confidence            9999999999999999853

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.70  E-value=1.1e-16  Score=133.33  Aligned_cols=58  Identities=26%  Similarity=0.263  Sum_probs=44.1

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      .++|+++|+||+|+.+................+.+++++||+++.|++++++++...+
T Consensus       119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         119 TAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYELL  176 (176)
T ss_pred             hhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence            3799999999999976554433322333444557899999999999999999998753

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.70  E-value=1.4e-16  Score=151.03  Aligned_cols=79  Identities=20%  Similarity=0.250  Sum_probs=55.8

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      ..+|++++|+|++++.+.++...|..      ..++|+++|+||+|+.......        ...+.+++++||++|.|+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI  358 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI  358 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence            33666777777766665554333322      2578999999999986433221        233468999999999999


Q ss_pred             HHHHHHHHHHcCC
Q psy15725        332 KQLFRRVAAALPG  344 (355)
Q Consensus       332 ~~l~~~l~~~i~~  344 (355)
                      ++++++|.+.+..
T Consensus       359 ~~L~~~L~~~l~~  371 (449)
T PRK05291        359 DELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.70  E-value=5.5e-16  Score=144.35  Aligned_cols=90  Identities=22%  Similarity=0.256  Sum_probs=59.6

Q ss_pred             CcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        254 STVAVVVYDITNA---NSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       254 ~~~vi~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                      ++++++|+|+++.   ..+++...|.+++..+..  .++|+++|+||+|+...    .+....+.+..+++++++||+++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence            3444555555432   334444455555544321  47899999999997322    22334455555578999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~~  347 (355)
                      .|+++++++|.+.+...+.
T Consensus       313 eGI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        313 QGLDELLYAVAELLEETPE  331 (424)
T ss_pred             CCHHHHHHHHHHHHHhCcc
Confidence            9999999999998876543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.70  E-value=5.3e-16  Score=150.51  Aligned_cols=87  Identities=21%  Similarity=0.222  Sum_probs=63.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +..+|+++|+.++|||||+++|.+..+...+.+                       ++..+.....+.+++. ..+.+||
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~-----------------------GIT~~ig~~~v~~~~~-~~i~~iD  141 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAG-----------------------GITQHIGAYHVENEDG-KMITFLD  141 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCC-----------------------ceeecceEEEEEECCC-cEEEEEE
Confidence            457899999999999999999998654433221                       1111222222333222 2789999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNAN  122 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~  122 (355)
                      |||++.|..++...+..+|++++|||+++..
T Consensus       142 TPGhe~F~~~r~rga~~aDiaILVVda~dgv  172 (587)
T TIGR00487       142 TPGHEAFTSMRARGAKVTDIVVLVVAADDGV  172 (587)
T ss_pred             CCCCcchhhHHHhhhccCCEEEEEEECCCCC
Confidence            9999999999998999999999999998743

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01894 EngA1 EngA1 subfamily

Probab=99.69  E-value=2.3e-16  Score=128.59  Aligned_cols=52  Identities=23%  Similarity=0.225  Sum_probs=38.0

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ++|+++|+||+|+.+....     .......+. +++++||++|.|++++|++|.+.+
T Consensus       105 ~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         105 KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence            5788888888887543322     122233444 789999999999999999998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.69  E-value=3.2e-17  Score=131.49  Aligned_cols=143  Identities=19%  Similarity=0.334  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      ++|+++|.||||||||+|+|++.+..      +            +.|+.     ...+.....+.+.+  ..+.++|+|
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~------v------------~n~pG-----~Tv~~~~g~~~~~~--~~~~lvDlP   55 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQK------V------------GNWPG-----TTVEKKEGIFKLGD--QQVELVDLP   55 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEE------E------------EESTT-----SSSEEEEEEEEETT--EEEEEEE--
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCce------e------------cCCCC-----CCeeeeeEEEEecC--ceEEEEECC
Confidence            58999999999999999999995410      1            12222     12233333333333  689999999


Q ss_pred             Cccccc------ccccccc--cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         94 GQERFR------SLIPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        94 g~~~~~------~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      |.-...      .....++  ...|++++|+|+++.   +.-.++..++...                            
T Consensus        56 G~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e~----------------------------  104 (156)
T PF02421_consen   56 GIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLEL----------------------------  104 (156)
T ss_dssp             --SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHHT----------------------------
T ss_pred             CcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHHc----------------------------
Confidence            963322      2233333  579999999999873   2222333444332                            


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  229 (355)
                                      ++|++++.||+|....+.+.. ....+.+..+++++.+|+.++.+.++
T Consensus       105 ----------------g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen  105 ----------------GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             ----------------TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             ----------------CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence                            899999999999876555443 35677778899999999999888764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.68  E-value=6.2e-16  Score=152.16  Aligned_cols=91  Identities=20%  Similarity=0.302  Sum_probs=65.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +..+|+++|+.++|||||+++|....+.....+.+                   +.+++  ........++....+.|||
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~Gi-------------------Tq~i~--~~~v~~~~~~~~~kItfiD  301 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGI-------------------TQKIG--AYEVEFEYKDENQKIVFLD  301 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCcc-------------------ccccc--eEEEEEEecCCceEEEEEE
Confidence            45689999999999999999998855433221111                   11111  1222222334457899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcch
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANS  123 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  123 (355)
                      |||++.|..++..++..+|++|+|||+++...
T Consensus       302 TPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~  333 (742)
T CHL00189        302 TPGHEAFSSMRSRGANVTDIAILIIAADDGVK  333 (742)
T ss_pred             CCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC
Confidence            99999999999999999999999999988533

>KOG0076|consensus

Probab=99.68  E-value=5.3e-17  Score=127.80  Aligned_cols=98  Identities=23%  Similarity=0.431  Sum_probs=73.0

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+.|+++|..++|||||+.+..... ...|.               ..-+....+|+|.+..+..+.    ...+.+||
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~-~~~~~---------------~l~~~ki~~tvgLnig~i~v~----~~~l~fwd   75 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDF-SKAYG---------------GLNPSKITPTVGLNIGTIEVC----NAPLSFWD   75 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHH-Hhhhc---------------CCCHHHeecccceeecceeec----cceeEEEE
Confidence            45889999999999999999876532 11110               112345567887766655542    46899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK  129 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~  129 (355)
                      .+|++..+.+|..+|..+.++|++||+++++.|+....
T Consensus        76 lgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t  113 (197)
T KOG0076|consen   76 LGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKT  113 (197)
T ss_pred             cCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHH
Confidence            99999999999999999999999999988877765443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.68  E-value=1.3e-15  Score=143.60  Aligned_cols=63  Identities=17%  Similarity=0.152  Sum_probs=47.3

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      .++|+++|+||+|+.+...+.. .........+++++++||+++.|+++++++|.+.+...+..
T Consensus       283 ~~kP~IVVlNKiDL~da~el~e-~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~  345 (500)
T PRK12296        283 AERPRLVVLNKIDVPDARELAE-FVRPELEARGWPVFEVSAASREGLRELSFALAELVEEARAA  345 (500)
T ss_pred             cCCCEEEEEECccchhhHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence            4789999999999864433211 22222334578999999999999999999999998776543

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.68  E-value=4.4e-16  Score=146.73  Aligned_cols=141  Identities=23%  Similarity=0.252  Sum_probs=97.0

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+|+|++....                     ....+ |+...++....+.+++  ..+.+||
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~a---------------------ivs~~-pgtTrd~~~~~i~~~g--~~v~l~D  257 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRA---------------------IVSDI-KGTTRDVVEGDFELNG--ILIKLLD  257 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCc---------------------ccCCC-CCcEEEEEEEEEEECC--EEEEEee
Confidence            3589999999999999999999985321                     11111 2223345555555554  4678999


Q ss_pred             cCCccccccc--------ccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         92 TAGQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        92 ~~g~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      |||+.++...        ...+++.+|++++|||++++.+++..  |+..+..                           
T Consensus       258 TaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---------------------------  308 (442)
T TIGR00450       258 TAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---------------------------  308 (442)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---------------------------
Confidence            9998655432        23567899999999999998887765  6655432                           


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  229 (355)
                                       .+.|+++|+||+|+...      ....++...+.+++.+|+.+ .+++.
T Consensus       309 -----------------~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~  350 (442)
T TIGR00450       309 -----------------SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKA  350 (442)
T ss_pred             -----------------CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHH
Confidence                             26899999999998543      12334455566788888886 34443

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.68  E-value=1.1e-15  Score=129.79  Aligned_cols=86  Identities=15%  Similarity=0.064  Sum_probs=55.1

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC--HHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--TEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      .+++++++|.+++.+.... .....+..   .++|+++++||+|+.+.....  .............+++++||+++.|+
T Consensus       107 ~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi  182 (196)
T PRK00454        107 LKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGI  182 (196)
T ss_pred             ceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCH
Confidence            3456677777665443221 11222222   578999999999986543211  11122333333578999999999999


Q ss_pred             HHHHHHHHHHcC
Q psy15725        332 KQLFRRVAAALP  343 (355)
Q Consensus       332 ~~l~~~l~~~i~  343 (355)
                      ++++++|.+.+.
T Consensus       183 ~~l~~~i~~~~~  194 (196)
T PRK00454        183 DELRAAIAKWLA  194 (196)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>PRK11058 GTPase HflX; Provisional

Probab=99.67  E-value=2.1e-15  Score=141.40  Aligned_cols=88  Identities=22%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcE-EEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~SA~~~~g  330 (355)
                      ..+|++++|+|++++.+.+.+..|...+......++|+++|+||+|+.....  .. . . ....+.+ ++++||++|.|
T Consensus       275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~--~~-~-~-~~~~~~~~~v~ISAktG~G  349 (426)
T PRK11058        275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--PR-I-D-RDEENKPIRVWLSAQTGAG  349 (426)
T ss_pred             hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--HH-H-H-HHhcCCCceEEEeCCCCCC
Confidence            3478888999988887766665444444433335799999999999863211  11 1 1 1123444 58999999999


Q ss_pred             HHHHHHHHHHHcCC
Q psy15725        331 VKQLFRRVAAALPG  344 (355)
Q Consensus       331 v~~l~~~l~~~i~~  344 (355)
                      +++++++|.+.+..
T Consensus       350 IdeL~e~I~~~l~~  363 (426)
T PRK11058        350 IPLLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998854

>KOG0072|consensus

Probab=99.67  E-value=1e-16  Score=122.01  Aligned_cols=86  Identities=24%  Similarity=0.490  Sum_probs=71.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ...+|+++|-.|+||||++-|+.-++                        ..+..||++++.....    +++..+++||
T Consensus        17 ~e~rililgldGaGkttIlyrlqvge------------------------vvttkPtigfnve~v~----yKNLk~~vwd   68 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGE------------------------VVTTKPTIGFNVETVP----YKNLKFQVWD   68 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCc------------------------ccccCCCCCcCccccc----cccccceeeE
Confidence            78999999999999999998876533                        2345678877655444    5889999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      ++|+...+++|..|+.+.|++|+|+|.+|+....
T Consensus        69 LggqtSirPyWRcYy~dt~avIyVVDssd~dris  102 (182)
T KOG0072|consen   69 LGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRIS  102 (182)
T ss_pred             ccCcccccHHHHHHhcccceEEEEEeccchhhhh
Confidence            9999999999999999999999999999865443

>COG1159 Era GTPase [General function prediction only]

Probab=99.67  E-value=9.4e-16  Score=132.47  Aligned_cols=90  Identities=22%  Similarity=0.243  Sum_probs=62.5

Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWI-DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAG  328 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~  328 (355)
                      +.++|+++||+|++....-  .++++ +.+.+   .+.|++++.||+|...++..-......+..... ..++++||++|
T Consensus        83 l~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             hccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            4568888888888775543  22333 33433   468999999999987554421222222222222 48999999999


Q ss_pred             CCHHHHHHHHHHHcCCC
Q psy15725        329 YNVKQLFRRVAAALPGM  345 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~  345 (355)
                      .|++.+.+.+..+++..
T Consensus       158 ~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         158 DNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             CCHHHHHHHHHHhCCCC
Confidence            99999999999999865

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.67  E-value=1.1e-15  Score=152.53  Aligned_cols=112  Identities=18%  Similarity=0.192  Sum_probs=70.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +-.+|+|+|++++|||||+++|+...-.......+.+.+ .    ..+....+..+  +++.......+.++..++.+||
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~-~----~~D~~~~e~~r--giti~~~~~~~~~~~~~i~liD   81 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGA-A----TMDWMEQEKER--GITITSAATTVFWKGHRINIID   81 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCc-c----ccCCCHHHHhc--CCCEecceEEEEECCeEEEEEE
Confidence            346999999999999999999986321110000010000 0    00111111122  3333333444445567899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  130 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  130 (355)
                      |||+.+|...+...++.+|++++|+|+.+....+....|
T Consensus        82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~  120 (689)
T TIGR00484        82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW  120 (689)
T ss_pred             CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH
Confidence            999998888888889999999999999986555443333

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01895 EngA2 EngA2 subfamily

Probab=99.67  E-value=2.1e-15  Score=124.91  Aligned_cols=84  Identities=21%  Similarity=0.263  Sum_probs=52.2

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH-HHHHHhhc----CcEEEEecCCCC
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE-GERKAKEL----NVMFIETSAKAG  328 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~-~~~~~~~~----~~~~~~~SA~~~  328 (355)
                      +|++++|+|.+++.+.... .+...+..   .++|+++++||+|+.......... ...+.+..    ..+++++||+++
T Consensus        85 ~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (174)
T cd01895          85 ADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTG  160 (174)
T ss_pred             cCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCC
Confidence            5667777777666554332 22222222   467888888888876442111111 12222222    258999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy15725        329 YNVKQLFRRVAAA  341 (355)
Q Consensus       329 ~gv~~l~~~l~~~  341 (355)
                      .|++++++++.+.
T Consensus       161 ~~i~~~~~~l~~~  173 (174)
T cd01895         161 QGVDKLFDAIDEV  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.67  E-value=1.1e-15  Score=137.94  Aligned_cols=90  Identities=21%  Similarity=0.239  Sum_probs=60.3

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~g  330 (355)
                      ..+|++++|+|+++..+. ......+.+..   .+.|+++|+||+|+.............+.+..+ .+++++||+++.|
T Consensus        83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             hcCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            347888899988873321 11222233332   478999999999996332222223333443333 6899999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q psy15725        331 VKQLFRRVAAALPGM  345 (355)
Q Consensus       331 v~~l~~~l~~~i~~~  345 (355)
                      +++++++|.+.++..
T Consensus       159 v~~L~~~L~~~l~~~  173 (292)
T PRK00089        159 VDELLDVIAKYLPEG  173 (292)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999999754

>PRK10218 GTP-binding protein; Provisional

Probab=99.66  E-value=2.9e-15  Score=145.60  Aligned_cols=102  Identities=21%  Similarity=0.329  Sum_probs=74.6

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhc--CCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYD--SFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      -.||+++|+.++|||||+++|+..  .+...+.  .  ..    +.+ +..  ....+.++++......+.++...+++|
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~--~--~~----~v~-D~~--~~E~erGiTi~~~~~~i~~~~~~inli   73 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE--T--QE----RVM-DSN--DLEKERGITILAKNTAIKWNDYRINIV   73 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccc--c--ce----eee-ccc--cccccCceEEEEEEEEEecCCEEEEEE
Confidence            368999999999999999999973  2222110  0  00    000 111  122455667777777777888999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      ||||+.+|...+..+++.+|++++|||+.+....+
T Consensus        74 DTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q  108 (607)
T PRK10218         74 DTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ  108 (607)
T ss_pred             ECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH
Confidence            99999999999999999999999999998864443

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.66  E-value=9.5e-16  Score=149.08  Aligned_cols=97  Identities=22%  Similarity=0.245  Sum_probs=64.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee--cCcE-----
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL--EDRT-----   84 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~-----   84 (355)
                      +...|+++|++|+|||||+++|.+..+....++                   ..+++++..+.......  .+..     
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g-------------------~itq~ig~~~~~~~~~~~~~~~~~~~~~   65 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAG-------------------GITQHIGATEVPIDVIEKIAGPLKKPLP   65 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCC-------------------ceEEeeceeeccccccccccceeccccc
Confidence            345799999999999999999987543322221                   11223332222211100  0000     


Q ss_pred             -----EEEEEEecCCcccccccccccccCccEEEEEEECCC---cchhhhH
Q psy15725         85 -----VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN---ANSFHQT  127 (355)
Q Consensus        85 -----~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~  127 (355)
                           -.+.+|||||++.|..++...++.+|++++|+|+++   +++++.+
T Consensus        66 ~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i  116 (586)
T PRK04004         66 IKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI  116 (586)
T ss_pred             cccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH
Confidence                 127899999999999998888899999999999998   4555544

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.66  E-value=2.5e-15  Score=146.19  Aligned_cols=109  Identities=20%  Similarity=0.323  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcC--CCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      +|+++|+.++|||||+++|+...  +....  .+.      .+.+ +..+  .....++++......+.++...+++|||
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~--~v~------~~~~-D~~~--~ErerGiTI~~~~~~v~~~~~kinlIDT   71 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANE--AVA------ERVM-DSND--LERERGITILAKNTAIRYNGTKINIVDT   71 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccc--cce------eecc-cCch--HHHhCCccEEeeeEEEEECCEEEEEEEC
Confidence            79999999999999999999742  22211  110      0000 1111  1223455666666666677789999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||+.+|...+..+++.+|++++|+|+.+.. ..+...|+..+.
T Consensus        72 PGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~  113 (594)
T TIGR01394        72 PGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKAL  113 (594)
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHH
Confidence            999999999999999999999999998743 333344555544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.66  E-value=5e-16  Score=132.27  Aligned_cols=120  Identities=19%  Similarity=0.345  Sum_probs=85.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||+++|..+.+..++..+                        ..+.........++...+.+||+||
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~------------------------~~~~~~~~~~~~~~~~~~~l~D~pG   57 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI------------------------EPNVATFILNSEGKGKKFRLVDVPG   57 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE------------------------eecceEEEeecCCCCceEEEEECCC
Confidence            6899999999999999999986554432211                        1111111111113456799999999


Q ss_pred             cccccccccccccCc-cEEEEEEECCCc-chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         95 QERFRSLIPSYIRDS-TVAVVVYDITNA-NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~-d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      +.+++..+..+++.+ +++|+|+|+.+. .++.....|+..+....                                  
T Consensus        58 ~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~----------------------------------  103 (203)
T cd04105          58 HPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDL----------------------------------  103 (203)
T ss_pred             CHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHH----------------------------------
Confidence            999988888889998 999999999997 67777666555443210                                  


Q ss_pred             ccccccCCCccEEEEEeecCCCCc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSD  196 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~  196 (355)
                          ......+|+++++||+|+..
T Consensus       104 ----~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105         104 ----EKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ----hhccCCCCEEEEecchhhcc
Confidence                01124799999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.65  E-value=1.8e-15  Score=150.31  Aligned_cols=86  Identities=17%  Similarity=0.203  Sum_probs=63.1

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+...|+++|+.++|||||+++|....+...+.                       +++..+.....+.++  ...+.||
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~-----------------------~GIT~~iga~~v~~~--~~~Itfi  342 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEA-----------------------GGITQHIGAYQVETN--GGKITFL  342 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccc-----------------------CceeeeccEEEEEEC--CEEEEEE
Confidence            455789999999999999999998755432211                       111111111222233  3579999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      ||||+..|..++...+..+|++|+|||+++.
T Consensus       343 DTPGhe~F~~m~~rga~~aDiaILVVdAddG  373 (787)
T PRK05306        343 DTPGHEAFTAMRARGAQVTDIVVLVVAADDG  373 (787)
T ss_pred             ECCCCccchhHHHhhhhhCCEEEEEEECCCC
Confidence            9999999999999889999999999999884

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.65  E-value=2.3e-15  Score=139.58  Aligned_cols=91  Identities=21%  Similarity=0.221  Sum_probs=59.0

Q ss_pred             CcEEEEEEeCC---CcccHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC--cEEEEecCC
Q psy15725        254 STVAVVVYDIT---NANSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAK  326 (355)
Q Consensus       254 ~~~vi~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~SA~  326 (355)
                      ++++++|+|++   +...++....|++++..+..  .++|+++|+||+|+.+...+ ......+.+..+  .+++++||+
T Consensus       238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            44555555554   23344445555555554321  46899999999998644333 222233333333  379999999


Q ss_pred             CCCCHHHHHHHHHHHcCCC
Q psy15725        327 AGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~~  345 (355)
                      ++.||++++++|.+.++..
T Consensus       317 tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhC
Confidence            9999999999999999764

>KOG0395|consensus

Probab=99.65  E-value=1.4e-15  Score=127.87  Aligned_cols=120  Identities=39%  Similarity=0.578  Sum_probs=109.7

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVS  305 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~  305 (355)
                      .+.+.+.|+||+|++.+..+...++..++++++||++++..||+.+..+...+.+... ..+|+++|+||+|+...+.+.
T Consensus        48 ~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~  127 (196)
T KOG0395|consen   48 GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVS  127 (196)
T ss_pred             CEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccC
Confidence            4567788999999999999999999999999999999999999999999888855443 678999999999998889999


Q ss_pred             HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      .+++..++..++++++++||+.+.||+++|..|.+.+...+
T Consensus       128 ~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~  168 (196)
T KOG0395|consen  128 EEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPR  168 (196)
T ss_pred             HHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999988743

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.65  E-value=1e-15  Score=128.00  Aligned_cols=146  Identities=19%  Similarity=0.216  Sum_probs=89.2

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ....+|+++|++|+|||||+|++++..+...+                       .++.+.+.....+..+.   .+.+|
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~-----------------------~~~~~~t~~~~~~~~~~---~~~li   69 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLART-----------------------SKTPGRTQLINFFEVND---GFRLV   69 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccc-----------------------cCCCCcceEEEEEEeCC---cEEEE
Confidence            45689999999999999999999985422221                       11222111112222222   58999


Q ss_pred             ecCCcc----------ccccccccccc---CccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccc
Q psy15725         91 DTAGQE----------RFRSLIPSYIR---DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHL  157 (355)
Q Consensus        91 D~~g~~----------~~~~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
                      ||||..          .+......+++   .+|++++|+|++++.+..... ++..+..                     
T Consensus        70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---------------------  127 (179)
T TIGR03598        70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---------------------  127 (179)
T ss_pred             eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---------------------
Confidence            999952          23333334444   358999999998865554432 2222221                     


Q ss_pred             cccccCccccCccccccccccCCCccEEEEEeecCCCCcccce--ehhhhhhhhhcc--CeEEEEeeeeecccc
Q psy15725        158 SFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKEL--NVMFIETSAKAGYNV  227 (355)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v--~~~~~~~~~~~~--~~~~~~~sa~~~~~v  227 (355)
                                             .++|+++++||+|+......  ...+........  ..+++.+|+.++.++
T Consensus       128 -----------------------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi  178 (179)
T TIGR03598       128 -----------------------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI  178 (179)
T ss_pred             -----------------------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence                                   27899999999998643211  122223333332  247999999998775

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0074|consensus

Probab=99.64  E-value=1.1e-15  Score=116.03  Aligned_cols=152  Identities=22%  Similarity=0.328  Sum_probs=109.5

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      +-+.+||+++|-.++|||||+.+|....                        +....||-|++......   ...+++++
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED------------------------~~hltpT~GFn~k~v~~---~g~f~Lnv   66 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSED------------------------PRHLTPTNGFNTKKVEY---DGTFHLNV   66 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCC------------------------hhhccccCCcceEEEee---cCcEEEEE
Confidence            3567999999999999999999987632                        23346777766555443   34579999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||.+|+...+.+|..|+.+.|++|+|+|.+|+..|+.+...+-++...                                
T Consensus        67 wDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELlee--------------------------------  114 (185)
T KOG0074|consen   67 WDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEE--------------------------------  114 (185)
T ss_pred             EecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhh--------------------------------
Confidence            999999999999999999999999999999988898876655555322                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhh---hhhhccCeEEEEeeeeeccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE---RKAKELNVMFIETSAKAGYNVK  228 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~---~~~~~~~~~~~~~sa~~~~~v~  228 (355)
                              .+...+|+++.+||.|+--...+......   ...+.....+.++++..+.+..
T Consensus       115 --------eKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen  115 --------EKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             --------hhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence                    44558999999999997433222221111   1112223567777777665543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.64  E-value=1.6e-15  Score=123.49  Aligned_cols=139  Identities=22%  Similarity=0.235  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      ++|+++|++|+|||||++++.+......                 .     ..++...++....+..+  ...+.+||||
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~-----------------~-----~~~~~~~~~~~~~~~~~--~~~~~i~Dtp   57 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIV-----------------S-----DIAGTTRDVIEESIDIG--GIPVRLIDTA   57 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEec-----------------c-----CCCCCccceEEEEEEeC--CEEEEEEECC
Confidence            5899999999999999999998542110                 0     01111222222233232  3578999999


Q ss_pred             Cccccccc--------ccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         94 GQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        94 g~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      |...+...        ....+..+|++++|+|++++.+......|..                                 
T Consensus        58 G~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---------------------------------  104 (157)
T cd04164          58 GIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL---------------------------------  104 (157)
T ss_pred             CcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh---------------------------------
Confidence            97655432        2245678999999999999877766554422                                 


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                                    ....|+++|+||+|+.+....       .......+++.+|+.++.+++.+
T Consensus       105 --------------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l  148 (157)
T cd04164         105 --------------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDEL  148 (157)
T ss_pred             --------------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHH
Confidence                          137999999999998654322       23344668899999888776643

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.64  E-value=6.5e-16  Score=147.95  Aligned_cols=153  Identities=24%  Similarity=0.246  Sum_probs=99.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..++|+++|++|||||||+|+|++......                      ...++...+.....+.+++.  .+.+||
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~----------------------s~~~gtT~d~~~~~~~~~~~--~~~l~D  265 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV----------------------DDVAGTTVDPVDSLIELGGK--TWRFVD  265 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccc----------------------cCCCCccCCcceEEEEECCE--EEEEEE
Confidence            358999999999999999999998543111                      11122223333344445443  467999


Q ss_pred             cCCcc----------cccccc-cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         92 TAGQE----------RFRSLI-PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        92 ~~g~~----------~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      |||..          .|..++ ..+++.+|++++|+|+++..+++... ++..+..                        
T Consensus       266 TaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~------------------------  320 (472)
T PRK03003        266 TAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE------------------------  320 (472)
T ss_pred             CCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH------------------------
Confidence            99963          222222 23568999999999999988887764 3333321                        


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccceEEEE
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQ  233 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~  233 (355)
                                          .+.|+++|+||+|+.+...   +..+....+......+++.+||.++.+++.++..
T Consensus       321 --------------------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~  376 (472)
T PRK03003        321 --------------------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPA  376 (472)
T ss_pred             --------------------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHH
Confidence                                3789999999999964321   1111111222233468899999999999876543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.62  E-value=1.5e-15  Score=148.02  Aligned_cols=148  Identities=20%  Similarity=0.207  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +.|+++|+.++|||||+++|++...                    +.+..++.+++..++....+..++  ..+.+||+|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~--------------------d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtP   58 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAA--------------------DRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVP   58 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccC--------------------cCChhHhcCCceEEeEEEEEEeCC--EEEEEEECC
Confidence            4799999999999999999986321                    223334445555555555555544  689999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++.|...+...+.++|++++|+|+++.   ++++.+.    .+..                                  
T Consensus        59 Ghe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~----------------------------------  100 (581)
T TIGR00475        59 GHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL----------------------------------  100 (581)
T ss_pred             CHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH----------------------------------
Confidence            9999998888889999999999999984   3333332    1111                                  


Q ss_pred             ccccccccCCCccE-EEEEeecCCCCccccee--hhhhhhhhhcc----CeEEEEeeeeeccccceEE
Q psy15725        171 WIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS--TEEGERKAKEL----NVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       171 ~~~~~~~~~~~~~p-iilv~nK~D~~~~~~v~--~~~~~~~~~~~----~~~~~~~sa~~~~~v~~i~  231 (355)
                                .++| +++|+||+|+.+...+.  ..+...+....    +.+++.+|+.++.+++.++
T Consensus       101 ----------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~  158 (581)
T TIGR00475       101 ----------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELK  158 (581)
T ss_pred             ----------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHH
Confidence                      2567 99999999986543221  22333433332    4789999999998877643

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG4423|consensus

Probab=99.62  E-value=2.1e-17  Score=131.41  Aligned_cols=159  Identities=36%  Similarity=0.605  Sum_probs=131.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc-EEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TVRLQL   89 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i   89 (355)
                      -.-+|++|+|..|+|||+++.|.+.                       ..++..+..|++.++..+.+..+.+ .+++++
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~-----------------------~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqL   79 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVH-----------------------QNFSYHYRATIGVDFALKVLQWDDKTIVRLQL   79 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHH-----------------------HHHHHHHHHHHhHHHHHHHhccChHHHHHHHH
Confidence            3458999999999999999999998                       5566677888999999998888765 567999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||..||++|..+...+++++.+..+|||+++..+|+....|.+++...                                
T Consensus        80 wdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk--------------------------------  127 (229)
T KOG4423|consen   80 WDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSK--------------------------------  127 (229)
T ss_pred             hcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCc--------------------------------
Confidence            999999999999999999999999999999999999999999887543                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCccccee-hhhhhhhhhccCe-EEEEeeeeeccccce
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKAKELNV-MFIETSAKAGYNVKQ  229 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~-~~~~~~~~~~~~~-~~~~~sa~~~~~v~~  229 (355)
                           +......++|+|+.+||||..+..... .....++.++.+. ...++|++.+.++++
T Consensus       128 -----~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  128 -----LQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             -----ccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence                 233445689999999999987654333 3556667777664 788899988777664

>KOG1423|consensus

Probab=99.61  E-value=6.3e-15  Score=126.67  Aligned_cols=91  Identities=16%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      +.++..+..+|+|+|.||||||||.|.+++.......                    .. ..|   +.......+..+..
T Consensus        65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--------------------~K-~~T---Tr~~ilgi~ts~eT  120 (379)
T KOG1423|consen   65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--------------------RK-VHT---TRHRILGIITSGET  120 (379)
T ss_pred             CchhcceEEEEEEEcCCCcchhhhhhHhhCCcccccc--------------------cc-ccc---eeeeeeEEEecCce
Confidence            3455677899999999999999999999996643321                    11 111   11122233445667


Q ss_pred             EEEEEecCCccc------------ccccccccccCccEEEEEEECCC
Q psy15725         86 RLQLWDTAGQER------------FRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        86 ~~~i~D~~g~~~------------~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      ++.|+||||.-.            +.+.....+..+|.+++|+|+++
T Consensus       121 Qlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~  167 (379)
T KOG1423|consen  121 QLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA  167 (379)
T ss_pred             EEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC
Confidence            999999999521            11123344668999999999996

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.61  E-value=7.8e-15  Score=137.78  Aligned_cols=106  Identities=14%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeee-cccceeeecccCCCCCcccccccee-eeeeeeeecC------c
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIV-GKTSLITRFMYDSFDNTYQATIGID-FLSKTMYLED------R   83 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~------~   83 (355)
                      +.++|+++|+.++|||||+++|.+...+.. ..... +.|..+ .  +..+.....++.++. ........+.      .
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~-~~e~~rg~Ti~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTH-SEELKRGISIRL-G--YADAEIYKCPECDGPECYTTEPVCPNCGSETEL   78 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccC-HhHHHcCceeEe-c--ccccccccccccCcccccccccccccccccccc
Confidence            679999999999999999999975321111 00000 000000 0  000000000111100 0000000011      2


Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      ...+.+|||||+++|...+...+..+|++++|+|+++.
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g  116 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP  116 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC
Confidence            35799999999999988887778888999999999864

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK12739 elongation factor G; Reviewed

Probab=99.61  E-value=2.3e-14  Score=143.20  Aligned_cols=108  Identities=18%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+-.+|+|+|+.++|||||+++|+...-.......+.+++..     .+....+..+.+..+.....  +.++..+++++
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~-----~D~~~~E~~rgiti~~~~~~--~~~~~~~i~li   78 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAAT-----MDWMEQEQERGITITSAATT--CFWKGHRINII   78 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccc-----cCCChhHhhcCCCccceeEE--EEECCEEEEEE
Confidence            345789999999999999999998632111111111111100     01112222333333333333  33355789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      ||||+.+|...+...++.+|++++|+|+.+....+
T Consensus        79 DTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~q  113 (691)
T PRK12739         79 DTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQ  113 (691)
T ss_pred             cCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHH
Confidence            99999888888888899999999999998864433

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.61  E-value=8.1e-15  Score=143.09  Aligned_cols=82  Identities=21%  Similarity=0.257  Sum_probs=59.9

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      +|++++|+|.++.+.   ...+...+.+   .++|+++++||+|+.+.+.+. .+...+.+..+++++++||++|.|+++
T Consensus        73 aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~e  145 (591)
T TIGR00437        73 PDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIER  145 (591)
T ss_pred             CCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHH
Confidence            677788888775332   1122233333   579999999999986544443 345567777889999999999999999


Q ss_pred             HHHHHHHHc
Q psy15725        334 LFRRVAAAL  342 (355)
Q Consensus       334 l~~~l~~~i  342 (355)
                      +++++.+..
T Consensus       146 L~~~i~~~~  154 (591)
T TIGR00437       146 LKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHh
Confidence            999998864

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.60  E-value=1.3e-15  Score=125.42  Aligned_cols=112  Identities=20%  Similarity=0.278  Sum_probs=92.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH-
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST-  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~-  306 (355)
                      ..+.+.+||++|++.++.+|..++.+++++++|+|++++.++.....|+..+.... .++|+++|+||.|+...+.+.. 
T Consensus        42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i  120 (164)
T cd04162          42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEI  120 (164)
T ss_pred             CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHH
Confidence            46778999999999999999999999999999999999999988888888876543 6899999999999865543321 


Q ss_pred             ---HHHHHHHhhcCcEEEEecCCC------CCCHHHHHHHHHH
Q psy15725        307 ---EEGERKAKELNVMFIETSAKA------GYNVKQLFRRVAA  340 (355)
Q Consensus       307 ---~~~~~~~~~~~~~~~~~SA~~------~~gv~~l~~~l~~  340 (355)
                         .....+++..++++++|||++      ++||+++|+.++.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         121 HKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             HHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence               122345566678999999998      9999999998874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00880 Era_like Era (E

Probab=99.60  E-value=1.6e-14  Score=117.54  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             EEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCccc
Q psy15725         18 FLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   97 (355)
Q Consensus        18 vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   97 (355)
                      ++|++|+|||||++++++......                     ....++ ............ ....+.+||+||...
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~---------------------~~~~~~-~~~~~~~~~~~~-~~~~~~~~Dt~g~~~   57 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIV---------------------SPVPGT-TTDPVEYVWELG-PLGPVVLIDTPGIDE   57 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCcccccc---------------------CCCCCc-EECCeEEEEEec-CCCcEEEEECCCCCc
Confidence            589999999999999988543210                     000010 011111111111 145799999999876


Q ss_pred             ccccc-------cccccCccEEEEEEECCCcchhhhH
Q psy15725         98 FRSLI-------PSYIRDSTVAVVVYDITNANSFHQT  127 (355)
Q Consensus        98 ~~~~~-------~~~~~~~d~ii~v~d~~~~~s~~~~  127 (355)
                      +....       ..+++.+|++++|+|..+.......
T Consensus        58 ~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~   94 (163)
T cd00880          58 AGGLGREREELARRVLERADLILFVVDADLRADEEEE   94 (163)
T ss_pred             cccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH
Confidence            65433       3467889999999999986555443

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.59  E-value=4.8e-15  Score=126.85  Aligned_cols=169  Identities=22%  Similarity=0.241  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCc--eeeee------cccceeeecccCCCCCccccccceeeeeeeeeecCcEEE
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIV------GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR   86 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~   86 (355)
                      +|+++|++|+|||||+++|+...-.-..  .+.+.      +...+-.....+....+..+.+..+  .....+......
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~--~~~~~~~~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITID--VAYRYFSTPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCee--cceeEEecCCce
Confidence            5899999999999999999875421110  00000      0000000000111111222222223  233334445568


Q ss_pred             EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccc
Q psy15725         87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH  166 (355)
Q Consensus        87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (355)
                      +.+|||||+.+|...+...++.+|++++|+|+++...-+....| ..+...                             
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~-~~~~~~-----------------------------  128 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHS-YILSLL-----------------------------  128 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHH-HHHHHc-----------------------------
Confidence            89999999988877666778999999999999875322221111 111111                             


Q ss_pred             cCccccccccccCCCccEEEEEeecCCCCcccce----ehhhhhhhhhccC---eEEEEeeeeeccccce
Q psy15725        167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV----STEEGERKAKELN---VMFIETSAKAGYNVKQ  229 (355)
Q Consensus       167 ~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v----~~~~~~~~~~~~~---~~~~~~sa~~~~~v~~  229 (355)
                                    ...++++|+||+|+.+...-    ...+...+....+   .+++.+|+.++.++.+
T Consensus       129 --------------~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         129 --------------GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             --------------CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence                          12457889999998642110    1122233333444   4689999999988764

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.59  E-value=2e-14  Score=134.93  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=27.7

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        317 NVMFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       317 ~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      +++++++||++|.|+++++++|.+.++.....
T Consensus       175 ~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~  206 (411)
T PRK04000        175 NAPIIPVSALHKVNIDALIEAIEEEIPTPERD  206 (411)
T ss_pred             CCeEEEEECCCCcCHHHHHHHHHHhCCCCCCC
Confidence            46899999999999999999999988765433

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.58  E-value=8.5e-15  Score=138.74  Aligned_cols=176  Identities=19%  Similarity=0.220  Sum_probs=107.0

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcC--CCCCceee------eecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDS--FDNTYQAT------IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE   81 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   81 (355)
                      .-+.++|+++|+.++|||||+++|+...  +.....+.      ..|...+...+..+....+...++..+.....  +.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--Ec
Confidence            4567999999999999999999999732  22111000      01111111111222233333444444544444  44


Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      .....+.+|||||+++|.......+..+|++++|+|+++.+++.... .+...+...                       
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-----------------------  138 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-----------------------  138 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-----------------------
Confidence            45578999999999988777777788999999999999976442211 111111111                       


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccc----eehhhhhhhhhccC-----eEEEEeeeeeccccce
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----VSTEEGERKAKELN-----VMFIETSAKAGYNVKQ  229 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----v~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~  229 (355)
                                         ....|+++++||+|+.+...    ....+...+++..+     .+++++|+.++.|+..
T Consensus       139 -------------------~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       139 -------------------LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             -------------------cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence                               01358999999999863211    11233334444433     6799999999988765

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.58  E-value=1e-14  Score=145.61  Aligned_cols=147  Identities=16%  Similarity=0.219  Sum_probs=102.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.++|+++|++|||||||+|++++.+...                  +.       ..|.++..+...+..+...+.+||
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~v------------------gn-------~pGvTve~k~g~~~~~~~~i~lvD   56 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRV------------------GN-------WAGVTVERKEGQFSTTDHQVTLVD   56 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcc------------------CC-------CCCceEeeEEEEEEcCceEEEEEE
Confidence            35789999999999999999998843200                  11       123334444444556667899999


Q ss_pred             cCCcccccccc----------cccc--cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         92 TAGQERFRSLI----------PSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        92 ~~g~~~~~~~~----------~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      |||+..+....          ..++  ..+|++++|+|+++.+..   ..|..++..                       
T Consensus        57 tPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e-----------------------  110 (772)
T PRK09554         57 LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE-----------------------  110 (772)
T ss_pred             CCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHH-----------------------
Confidence            99987664321          1222  378999999999885432   234444432                       


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                           .++|+++++||+|+.+.+.+. ....++.+..+++++.+|+..+.+++++.
T Consensus       111 ---------------------~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~  160 (772)
T PRK09554        111 ---------------------LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALK  160 (772)
T ss_pred             ---------------------cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence                                 279999999999986544443 34566777889999999999998877543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.58  E-value=7.6e-15  Score=139.67  Aligned_cols=152  Identities=19%  Similarity=0.170  Sum_probs=95.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...++|+++|++|||||||+|+|++......                 ...     ++...+.....+..++  ..+.+|
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-----------------~~~-----~gtt~~~~~~~~~~~~--~~~~li  225 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV-----------------SDI-----AGTTRDSIDIPFERNG--KKYLLI  225 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeec-----------------CCC-----CCceECcEeEEEEECC--cEEEEE
Confidence            3458999999999999999999998542110                 011     1111122222233333  368999


Q ss_pred             ecCCcccccccc-----------cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         91 DTAGQERFRSLI-----------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        91 D~~g~~~~~~~~-----------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      ||||..++....           ..+++.+|++++|+|++++.+.+... +...+..                       
T Consensus       226 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~-----------------------  281 (429)
T TIGR03594       226 DTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE-----------------------  281 (429)
T ss_pred             ECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-----------------------
Confidence            999976544322           23578999999999999987766543 2222221                       


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCc-ccceeh--hhh-hhhhhccCeEEEEeeeeeccccceEE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVST--EEG-ERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~v~~--~~~-~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                           .+.|+++|+||+|+.. ......  ... ..+......+++++||.++.+++.++
T Consensus       282 ---------------------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~  336 (429)
T TIGR03594       282 ---------------------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLL  336 (429)
T ss_pred             ---------------------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHH
Confidence                                 2689999999999862 111100  111 11111224789999999999887653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.58  E-value=4.5e-14  Score=121.68  Aligned_cols=104  Identities=16%  Similarity=0.180  Sum_probs=59.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccc----cccceeeeee-------------e
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ----ATIGIDFLSK-------------T   77 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~t~~~~~~~~-------------~   77 (355)
                      ||+++|+.++|||||+++|..+.+.+......    ..+.++..-.-.....    ..++++....             .
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~----~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   76 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKAR----LNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI   76 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEE----eehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence            58999999999999999999877655322111    0011000000000000    0111111000             0


Q ss_pred             eeecCcEEEEEEEecCCccccccccccccc--CccEEEEEEECCCcc
Q psy15725         78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSTVAVVVYDITNAN  122 (355)
Q Consensus        78 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~  122 (355)
                      .........+.++||||+++|.......+.  .+|++++|+|+.+..
T Consensus        77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~  123 (224)
T cd04165          77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGI  123 (224)
T ss_pred             eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCC
Confidence            011222457899999999988766555554  689999999998753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.57  E-value=1.6e-14  Score=136.94  Aligned_cols=175  Identities=21%  Similarity=0.249  Sum_probs=102.9

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCcee--------eeecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--------TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED   82 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   82 (355)
                      -+.++|+++|++++|||||+++|+...-.-....        ...|...+-..+..+....+..+.+..+....  .++.
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~~   81 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFET   81 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEec
Confidence            3679999999999999999999997432111000        00011111111111222233333433343333  3444


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHH-HHHHhhhcCCceEEeeccccccccccccccc
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW-IDDVRTERGSDVIIMLVGSIETNFTHLSFHH  161 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
                      +...+.+|||||+++|...+...++.+|++++|+|++++..+.....+ ...+...                        
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~------------------------  137 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL------------------------  137 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc------------------------
Confidence            567899999999998877666668899999999999874233222222 2222111                        


Q ss_pred             cCccccCccccccccccCCCccEEEEEeecCCCCcccc----eehhhhhhhhhccC-----eEEEEeeeeeccccceE
Q psy15725        162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----VSTEEGERKAKELN-----VMFIETSAKAGYNVKQV  230 (355)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----v~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~i  230 (355)
                                         ...|+++++||+|+.+...    ....+...+....+     .+++.+|+.++.+++..
T Consensus       138 -------------------~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        138 -------------------GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             -------------------CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence                               1247999999999864211    11123333333333     57999999999988754

>PRK00007 elongation factor G; Reviewed

Probab=99.57  E-value=4.3e-14  Score=141.18  Aligned_cols=112  Identities=19%  Similarity=0.221  Sum_probs=69.0

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +-.+|+++|++++|||||+++|+...-.......+.+++..     .+....+..+.+..+  .....+.++..+++++|
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~-----~D~~~~E~~rg~ti~--~~~~~~~~~~~~~~liD   81 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAAT-----MDWMEQEQERGITIT--SAATTCFWKDHRINIID   81 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCccc-----CCCCHHHHhCCCCEe--ccEEEEEECCeEEEEEe
Confidence            45699999999999999999998632111111111111100     011111222233333  33333444557899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  130 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  130 (355)
                      |||+.+|.......++.+|++++|+|+......+....|
T Consensus        82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~  120 (693)
T PRK00007         82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW  120 (693)
T ss_pred             CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH
Confidence            999988877777788999999999999876544443333

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.56  E-value=1.8e-14  Score=123.61  Aligned_cols=106  Identities=20%  Similarity=0.291  Sum_probs=68.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec--------CcEEE
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE--------DRTVR   86 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------~~~~~   86 (355)
                      +|+++|+.++|||||+.+|+...-...  ....+.    .+++.... .+....+.+......+.++        ++...
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~--~~~~g~----~~~~D~~~-~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~   74 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIIS--EKLAGK----ARYMDSRE-DEQERGITMKSSAISLYFEYEEEDKADGNEYL   74 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCc--cccCCc----eeeccCCH-HHHHhccccccceEEEEEecCcccccCCCceE
Confidence            799999999999999999987432110  001111    11221111 1112222222222222222        44788


Q ss_pred             EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhH
Q psy15725         87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT  127 (355)
Q Consensus        87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~  127 (355)
                      +++|||||+.+|......+++.+|++++|||+.+..+.+..
T Consensus        75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~  115 (222)
T cd01885          75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE  115 (222)
T ss_pred             EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH
Confidence            99999999999999999999999999999999987666543

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.55  E-value=8.4e-14  Score=136.29  Aligned_cols=85  Identities=20%  Similarity=0.181  Sum_probs=57.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      -|+++|+.++|||||+++|++...                    +.+..+....+.++.....+.... ...+.+|||||
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~--------------------dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPG   60 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNA--------------------DRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPG   60 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC--------------------ccchhcccCCceEEeeeEEEecCC-CcEEEEEECCC
Confidence            589999999999999999986321                    222223322333333322222222 23589999999


Q ss_pred             cccccccccccccCccEEEEEEECCC
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      ++.|...+...+..+|++++|+|+++
T Consensus        61 he~fi~~m~~g~~~~D~~lLVVda~e   86 (614)
T PRK10512         61 HEKFLSNMLAGVGGIDHALLVVACDD   86 (614)
T ss_pred             HHHHHHHHHHHhhcCCEEEEEEECCC
Confidence            98887777777788888888888766

>cd00154 Rab Rab family

Probab=99.55  E-value=4.7e-14  Score=114.80  Aligned_cols=113  Identities=54%  Similarity=0.867  Sum_probs=100.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|.+.+...+..++++++++++|+|++++.+++.+..|+..+......++|+++++||+|+.++.....+
T Consensus        47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  126 (159)
T cd00154          47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTE  126 (159)
T ss_pred             EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHH
Confidence            45678899999999999999999999999999999999999999999999988766567999999999999756667777


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      +...+....+++++++||+++.|++++|++|.+
T Consensus       127 ~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154         127 EAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             HHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            888888878899999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04157 Arl6 Arl6 subfamily

Probab=99.55  E-value=2.9e-14  Score=116.91  Aligned_cols=111  Identities=17%  Similarity=0.235  Sum_probs=87.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc---CCCceEEEEeeCCCCCCcccC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQV  304 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~v  304 (355)
                      ..+.+.+||++|.+.+..+|..++..++++++|+|+++..++.....|+..+....   ..++|+++|+||+|+.+..  
T Consensus        43 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--  120 (162)
T cd04157          43 GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--  120 (162)
T ss_pred             CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--
Confidence            35678899999999999999999999999999999999998888878877765432   2579999999999986432  


Q ss_pred             CHHHHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        305 STEEGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       305 ~~~~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      ...+.....     ....++++++||++|.|++++|++|.+
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         121 TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            122222111     112357999999999999999999975

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04163 Era Era subfamily

Probab=99.55  E-value=4.9e-14  Score=115.75  Aligned_cols=148  Identities=18%  Similarity=0.162  Sum_probs=89.0

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ..+|+++|++|+|||||++++.+.......                 .    ...+.. .  ............+.+|||
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~-----------------~----~~~~~~-~--~~~~~~~~~~~~~~liDt   58 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS-----------------P----KPQTTR-N--RIRGIYTDDDAQIIFVDT   58 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEecc-----------------C----CCCcee-c--eEEEEEEcCCeEEEEEEC
Confidence            468999999999999999999885421110                 0    000100 0  111112233467899999


Q ss_pred             CCcccccc--------cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725         93 AGQERFRS--------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS  164 (355)
Q Consensus        93 ~g~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
                      ||......        .....+..+|++++|+|++++.+. ....+...+..                            
T Consensus        59 pG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~----------------------------  109 (168)
T cd04163          59 PGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKK----------------------------  109 (168)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHH----------------------------
Confidence            99754322        233457889999999999987221 11223333322                            


Q ss_pred             cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhcc-CeEEEEeeeeeccccce
Q psy15725        165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~  229 (355)
                                      .+.|+++|+||+|+.............+.... ..+++.+|+..+.+++.
T Consensus       110 ----------------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  159 (168)
T cd04163         110 ----------------SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDE  159 (168)
T ss_pred             ----------------hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHH
Confidence                            16899999999998632222222233333333 35788888887776654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.55  E-value=1.5e-14  Score=119.50  Aligned_cols=113  Identities=19%  Similarity=0.236  Sum_probs=89.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||++|+..++.+|..++.+++++++|+|+++..+++.+..|+..+..... .++|+++|+||.|+...+....
T Consensus        41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~  120 (167)
T cd04161          41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGAD  120 (167)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHH
Confidence            457789999999999999999999999999999999999999999889888865432 5899999999999864431111


Q ss_pred             H-H---HHHHHhh--cCcEEEEecCCCC------CCHHHHHHHHHH
Q psy15725        307 E-E---GERKAKE--LNVMFIETSAKAG------YNVKQLFRRVAA  340 (355)
Q Consensus       307 ~-~---~~~~~~~--~~~~~~~~SA~~~------~gv~~l~~~l~~  340 (355)
                      . .   ...+++.  ..+++++|||++|      .|+++.|+||..
T Consensus       121 i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         121 VIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             HHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            0 1   1122222  2368899999998      899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.54  E-value=6.2e-14  Score=112.30  Aligned_cols=159  Identities=26%  Similarity=0.333  Sum_probs=106.0

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      .......||+|.|+.++||||++.++..........+.-.           .+......-|+..++.....   +....+
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~-----------~s~k~kr~tTva~D~g~~~~---~~~~~v   70 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASS-----------VSGKGKRPTTVAMDFGSIEL---DEDTGV   70 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccc-----------cccccccceeEeecccceEE---cCcceE
Confidence            3456778999999999999999999887543222111000           00011112355555555544   233578


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      .+++||||++|+-.|..+.++++++++++|.+++..+ .....++.+...                              
T Consensus        71 ~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~------------------------------  119 (187)
T COG2229          71 HLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR------------------------------  119 (187)
T ss_pred             EEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc------------------------------
Confidence            9999999999999999999999999999999999888 434444443321                              


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh-c-cCeEEEEeeeeeccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-E-LNVMFIETSAKAGYN  226 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~-~-~~~~~~~~sa~~~~~  226 (355)
                                   ..+|+++.+||.|+.+...  .+...++.+ . ...+.+..++..+.+
T Consensus       120 -------------~~ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi~~~a~e~~~  165 (187)
T COG2229         120 -------------NPIPVVVAINKQDLFDALP--PEKIREALKLELLSVPVIEIDATEGEG  165 (187)
T ss_pred             -------------cCCCEEEEeeccccCCCCC--HHHHHHHHHhccCCCceeeeecccchh
Confidence                         2399999999999976432  222222222 2 367777777775544

>PRK12740 elongation factor G; Reviewed

Probab=99.54  E-value=1.2e-13  Score=138.04  Aligned_cols=105  Identities=21%  Similarity=0.230  Sum_probs=65.2

Q ss_pred             EcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCcccc
Q psy15725         19 LGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   98 (355)
Q Consensus        19 vG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   98 (355)
                      +|+.|+|||||+++|+...-.......+.++. .    ..+....+..+++.+.  .....+.++...+.+|||||+.+|
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~-~----~~d~~~~e~~rgiTi~--~~~~~~~~~~~~i~liDtPG~~~~   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGT-T----TMDFMPEERERGISIT--SAATTCEWKGHKINLIDTPGHVDF   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCc-c----cCCCChHHHhcCCCee--eceEEEEECCEEEEEEECCCcHHH
Confidence            69999999999999977432111111110000 0    0011112222333333  333334445678999999999988


Q ss_pred             cccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725         99 RSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  130 (355)
Q Consensus        99 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  130 (355)
                      ...+...++.+|++++|+|+++....+....|
T Consensus        74 ~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~  105 (668)
T PRK12740         74 TGEVERALRVLDGAVVVVCAVGGVEPQTETVW  105 (668)
T ss_pred             HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH
Confidence            88888889999999999999987666554444

>cd04167 Snu114p Snu114p subfamily

Probab=99.54  E-value=3.2e-14  Score=122.27  Aligned_cols=105  Identities=23%  Similarity=0.284  Sum_probs=67.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee--ee---cCcEEEEEE
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM--YL---EDRTVRLQL   89 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~---~~~~~~~~i   89 (355)
                      +|+++|+.|+|||||+++|+.............+.+   .+++ +....+.  ..+.++.....  .+   +++...+.+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~---~~~~-d~~~~e~--~~giti~~~~~~~~~~~~~~~~~~i~i   75 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKP---LRYT-DIRKDEQ--ERGISIKSSPISLVLPDSKGKSYLFNI   75 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCc---eeEC-CCCHHHH--HcCccccccceeEEEEcCCCCEEEEEE
Confidence            699999999999999999998664332110000000   0000 1111111  12222222222  22   345688999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      |||||+.+|...+..++..+|++++|+|+.+..++.
T Consensus        76 iDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~  111 (213)
T cd04167          76 IDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSN  111 (213)
T ss_pred             EECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHH
Confidence            999999999888888899999999999998876654

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.54  E-value=2.6e-14  Score=117.08  Aligned_cols=110  Identities=25%  Similarity=0.441  Sum_probs=86.9

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      .+.+.+||++|+..+...|..++.+++++++|+|++++.++.....|+..+..... .+.|+++|+||+|+...  ....
T Consensus        43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~  120 (160)
T cd04156          43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAE  120 (160)
T ss_pred             ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHH
Confidence            46789999999999998899999999999999999999888888888877654322 58999999999998532  2222


Q ss_pred             HHHH------HHhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        308 EGER------KAKELNVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       308 ~~~~------~~~~~~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      +...      +....++++++|||++|.||+++|++|.+
T Consensus       121 ~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            2221      11223468999999999999999999975

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.53  E-value=7.1e-13  Score=115.33  Aligned_cols=95  Identities=19%  Similarity=0.232  Sum_probs=63.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .-...+++||.|+||||||+++|++.+..                      ...|.=|   +.......+.+++.++++.
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~se----------------------va~y~FT---Tl~~VPG~l~Y~ga~IQil  115 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSE----------------------VADYPFT---TLEPVPGMLEYKGAQIQLL  115 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCcc----------------------ccccCce---ecccccceEeecCceEEEE
Confidence            34578999999999999999999984410                      0011100   1222334566777899999


Q ss_pred             ecCCccc-------ccccccccccCccEEEEEEECCCcch-hhhHHHH
Q psy15725         91 DTAGQER-------FRSLIPSYIRDSTVAVVVYDITNANS-FHQTSKW  130 (355)
Q Consensus        91 D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~~~~  130 (355)
                      |+||.-+       -....-...+.||.+++|+|+..... .+.+...
T Consensus       116 d~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~E  163 (365)
T COG1163         116 DLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERE  163 (365)
T ss_pred             cCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHH
Confidence            9998521       12345567899999999999997655 4444433

>PRK12736 elongation factor Tu; Reviewed

Probab=99.53  E-value=2.1e-13  Score=127.68  Aligned_cols=107  Identities=15%  Similarity=0.121  Sum_probs=65.9

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      .+...-+.++|+++|+.++|||||+++|++.....       +...+...-..+....+....+..+.  ....++.+..
T Consensus         5 ~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~-------g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~   75 (394)
T PRK12736          5 KFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAER-------GLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKR   75 (394)
T ss_pred             hhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhh-------ccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCc
Confidence            34456678999999999999999999998632110       00000000000111222223333333  3334444556


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      .+.+|||||+++|.......+..+|++++|+|+.+.
T Consensus        76 ~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g  111 (394)
T PRK12736         76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG  111 (394)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            789999999988877666667788899999888763

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.53  E-value=7.6e-14  Score=117.68  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=97.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.++|+++|+.++|||||+++|++.....       +..........+....+..+.+  +.......+..+..++.++|
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~-------g~~~~~~~~~~d~~~~E~~rg~--Ti~~~~~~~~~~~~~i~~iD   71 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKK-------GGAKFKKYDEIDKAPEEKARGI--TINTAHVEYETANRHYAHVD   71 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhc-------ccccccccccccCChhhhhcCc--cEEeeeeEecCCCeEEEEEE
Confidence            35899999999999999999998742100       0000000000011112222233  33333344455567899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||+..|.......+..+|++++|+|+.+...-+. ......+..                                   
T Consensus        72 tPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~-----------------------------------  115 (195)
T cd01884          72 CPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ-----------------------------------  115 (195)
T ss_pred             CcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----------------------------------
Confidence            99999888877888899999999999987432222 122222222                                   


Q ss_pred             cccccccCCCccE-EEEEeecCCCCccccee---hhhhhhhhhcc-----CeEEEEeeeeeccccc
Q psy15725        172 IDDVRTERGSDVI-IMLVGNKTDLSDKRQVS---TEEGERKAKEL-----NVMFIETSAKAGYNVK  228 (355)
Q Consensus       172 ~~~~~~~~~~~~p-iilv~nK~D~~~~~~v~---~~~~~~~~~~~-----~~~~~~~sa~~~~~v~  228 (355)
                               .++| ++++.||.|+..+....   ..+...+....     +++++.+|+.++.|..
T Consensus       116 ---------~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         116 ---------VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             ---------cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence                     1566 78999999985322211   12233333322     4689999999887643

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0462|consensus

Probab=99.52  E-value=2e-13  Score=125.88  Aligned_cols=100  Identities=16%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec---CcEEEEEE
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE---DRTVRLQL   89 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~i   89 (355)
                      --|+.||-+-..|||||..||+...-...       ....-.|++. ...-+  ...|+++...+..+-   ++...+++
T Consensus        60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~-------~~~~q~q~LD-kl~vE--RERGITIkaQtasify~~~~~ylLNL  129 (650)
T KOG0462|consen   60 IRNFSIIAHVDHGKSTLADRLLELTGTID-------NNIGQEQVLD-KLQVE--RERGITIKAQTASIFYKDGQSYLLNL  129 (650)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhCCCC-------CCCchhhhhh-hhhhh--hhcCcEEEeeeeEEEEEcCCceEEEe
Confidence            45899999999999999999998542000       0001111111 11111  233444443333332   45589999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN  122 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~  122 (355)
                      +||||+-+|.......+..|||+|+|+|++..-
T Consensus       130 IDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv  162 (650)
T KOG0462|consen  130 IDTPGHVDFSGEVSRSLAACDGALLVVDASQGV  162 (650)
T ss_pred             ecCCCcccccceehehhhhcCceEEEEEcCcCc
Confidence            999999999999988899999999999987743

>cd04151 Arl1 Arl1 subfamily

Probab=99.52  E-value=1.9e-14  Score=117.73  Aligned_cols=111  Identities=21%  Similarity=0.337  Sum_probs=84.7

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh-hcCCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT-ERGSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||++|.+.++.+|..++..++++++|+|++++.++....+++..+.. ....++|+++++||+|+.+..  ..
T Consensus        41 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~  118 (158)
T cd04151          41 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SE  118 (158)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CH
Confidence            356789999999999999999999999999999999998877766665554433 222579999999999986332  12


Q ss_pred             HHH-HHHH----hhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        307 EEG-ERKA----KELNVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       307 ~~~-~~~~----~~~~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      .+. ..+.    ...+++++++||++|.||+++|++|++
T Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            222 1221    112357999999999999999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.52  E-value=3.4e-14  Score=128.10  Aligned_cols=61  Identities=20%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHH-HhhcCcEEEEecCCCCCCHHHHHH-HHHHHcCCCCCCC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERK-AKELNVMFIETSAKAGYNVKQLFR-RVAAALPGMDSTE  349 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~-~~~~~~~~~~~SA~~~~gv~~l~~-~l~~~i~~~~~~~  349 (355)
                      ..+|+++++||.|+.+.....    ..+ .+..+.+++++||+.+.|++++.+ .+.+++|.....+
T Consensus       213 t~KPvI~VlNK~Dl~~~~~~~----~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~  275 (318)
T cd01899         213 RSKPMVIAANKADIPDAENNI----SKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE  275 (318)
T ss_pred             cCCcEEEEEEHHHccChHHHH----HHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence            569999999999975332211    122 222345899999999999999998 6999998765443

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=1.8e-13  Score=123.13  Aligned_cols=166  Identities=19%  Similarity=0.190  Sum_probs=116.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .++-..+||-+|.+|||||..+|+.-.-.....+++-++.  .+++..+.|..-. ...|+++....+..++.+..+++.
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk--~~~~a~SDWM~iE-kqRGISVtsSVMqF~Y~~~~iNLL   86 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRK--SGKHAKSDWMEIE-KQRGISVTSSVMQFDYADCLVNLL   86 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeecc--CCcccccHHHHHH-HhcCceEEeeEEEeccCCeEEecc
Confidence            4577899999999999999999987544444455553322  2233334444421 234667777888888888999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||+++|...+...+-.+|..+.|+|+...-.-+.++ +++-.+                                   
T Consensus        87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcr-----------------------------------  130 (528)
T COG4108          87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCR-----------------------------------  130 (528)
T ss_pred             CCCCccccchhHHHHHHhhheeeEEEecccCccHHHHH-HHHHHh-----------------------------------
Confidence            99999999999999999999999999998854333322 223222                                   


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  226 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~  226 (355)
                               ..++||+-.+||.|....  -+.+...+..+.++.....++.+.|.+
T Consensus       131 ---------lR~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i~~~PitWPIG~g  175 (528)
T COG4108         131 ---------LRDIPIFTFINKLDREGR--DPLELLDEIEEELGIQCAPITWPIGMG  175 (528)
T ss_pred             ---------hcCCceEEEeeccccccC--ChHHHHHHHHHHhCcceecccccccCC
Confidence                     248999999999997532  233444555566677666666665554

>PRK12735 elongation factor Tu; Reviewed

Probab=99.51  E-value=5e-13  Score=125.18  Aligned_cols=106  Identities=14%  Similarity=0.152  Sum_probs=65.2

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeec-ccCCCCCccccccceeeeeeeeeecCcE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRF-MYDSFDNTYQATIGIDFLSKTMYLEDRT   84 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~   84 (355)
                      -+...-+.++|+++|+.++|||||+++|++.....       +...+ ..+ ..+....+....+..+  .....+....
T Consensus         5 ~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~-------g~~~~-~~~~~~d~~~~E~~rGiT~~--~~~~~~~~~~   74 (396)
T PRK12735          5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKK-------GGGEA-KAYDQIDNAPEEKARGITIN--TSHVEYETAN   74 (396)
T ss_pred             hcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhc-------CCccc-chhhhccCChhHHhcCceEE--EeeeEEcCCC
Confidence            34556788999999999999999999998732100       00000 000 0011111222222222  3333444455


Q ss_pred             EEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      .++.++||||+.+|...+...+..+|++++|+|+.+.
T Consensus        75 ~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g  111 (396)
T PRK12735         75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG  111 (396)
T ss_pred             cEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC
Confidence            6789999999988776666667788888888888663

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.50  E-value=9.6e-14  Score=132.31  Aligned_cols=152  Identities=22%  Similarity=0.196  Sum_probs=93.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...++|+++|++|||||||+|+|++......                 +..     ++...+.....+..  ....+.+|
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-----------------~~~-----~gtt~~~~~~~~~~--~~~~~~lv  226 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV-----------------SDI-----AGTTRDSIDTPFER--DGQKYTLI  226 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceee-----------------cCC-----CCceEEEEEEEEEE--CCeeEEEE
Confidence            3569999999999999999999998431110                 111     11111222222222  33568899


Q ss_pred             ecCCccccccc-----------ccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         91 DTAGQERFRSL-----------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        91 D~~g~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      ||||.......           ...+++.+|++++|+|++++.+.+... +...+..                       
T Consensus       227 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~-----------------------  282 (435)
T PRK00093        227 DTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE-----------------------  282 (435)
T ss_pred             ECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----------------------
Confidence            99996432221           123577899999999999987765543 2222221                       


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccce---ehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV---STEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v---~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                           .+.|+++|+||+|+.+....   .......+......+++.+|+.++.+++.++
T Consensus       283 ---------------------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~  336 (435)
T PRK00093        283 ---------------------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLL  336 (435)
T ss_pred             ---------------------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHH
Confidence                                 26899999999998643211   1111111222234789999999999887643

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.50  E-value=6.5e-14  Score=114.48  Aligned_cols=110  Identities=20%  Similarity=0.290  Sum_probs=88.8

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      .+.+.+||++|++.+...+..++..++++++|||++++.++.....|+..+.... ..+.|+++++||+|+....  ...
T Consensus        42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~  119 (158)
T cd00878          42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVS  119 (158)
T ss_pred             CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHH
Confidence            5778999999999999999999999999999999999999888888887765533 2689999999999986433  122


Q ss_pred             HHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        308 EGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       308 ~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      +.....     ....++++++||++|.|++++|++|..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         120 ELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            222221     224478999999999999999999975

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG1707|consensus

Probab=99.50  E-value=2.5e-14  Score=132.88  Aligned_cols=162  Identities=25%  Similarity=0.344  Sum_probs=110.5

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      +.......++|+++|+.|||||||+.+++...+++.-++-+.                  .-++..++.+..       +
T Consensus         2 ~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~------------------~i~IPadvtPe~-------v   56 (625)
T KOG1707|consen    2 SDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP------------------RILIPADVTPEN-------V   56 (625)
T ss_pred             CCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC------------------ccccCCccCcCc-------C
Confidence            345677889999999999999999999999887666544331                  001111222221       3


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS  164 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
                      ...++|++..+.-+......++.+|++.+||+++++.+.+.+. .|+..+++..                          
T Consensus        57 pt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~--------------------------  110 (625)
T KOG1707|consen   57 PTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLF--------------------------  110 (625)
T ss_pred             ceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhccc--------------------------
Confidence            4789999876666666667789999999999999999999984 6999998642                          


Q ss_pred             cccCccccccccccCCCccEEEEEeecCCCCcccceehhh-hhhhhhccC--eEEEEeeeeeccccceEE
Q psy15725        165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE-GERKAKELN--VMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~-~~~~~~~~~--~~~~~~sa~~~~~v~~i~  231 (355)
                                   ...-++|+|+||||+|.........+. ..-+...+.  ..+++||+.+..++.+++
T Consensus       111 -------------~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~f  167 (625)
T KOG1707|consen  111 -------------GDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELF  167 (625)
T ss_pred             -------------CCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhh
Confidence                         112489999999999985433221111 111212221  246777777777776654

>KOG4252|consensus

Probab=99.49  E-value=2.6e-15  Score=118.67  Aligned_cols=158  Identities=31%  Similarity=0.476  Sum_probs=127.6

Q ss_pred             CccEEEEEeecCCCCcccceehhhhhhhhhc---------cCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE---------LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       181 ~~~piilv~nK~D~~~~~~v~~~~~~~~~~~---------~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                      .-+.+++|||+.=-..      .....+++.         +++.+.+  -....+.+.+...+||++|+++|..+...||
T Consensus        19 ~aiK~vivGng~VGKs------smiqryCkgifTkdykktIgvdfle--rqi~v~~Edvr~mlWdtagqeEfDaItkAyy   90 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKS------SMIQRYCKGIFTKDYKKTIGVDFLE--RQIKVLIEDVRSMLWDTAGQEEFDAITKAYY   90 (246)
T ss_pred             hhEEEEEECCCccchH------HHHHHHhccccccccccccchhhhh--HHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence            4688999999875422      122233322         2222222  1223445566778899999999999999999


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      +++.+.++||+.+|..+|+...+|.+.+.... ..+|.++|-||+|+.+...+...+...+++.++++++.+|+++..||
T Consensus        91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV  169 (246)
T KOG4252|consen   91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV  169 (246)
T ss_pred             ccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            99999999999999999999999999997766 78999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCC
Q psy15725        332 KQLFRRVAAALPGMDS  347 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~~  347 (355)
                      .+.|.+|+.++....+
T Consensus       170 ~~vF~YLaeK~~q~~k  185 (246)
T KOG4252|consen  170 MHVFAYLAEKLTQQKK  185 (246)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988765443

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.48  E-value=1.4e-13  Score=118.68  Aligned_cols=105  Identities=20%  Similarity=0.309  Sum_probs=63.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCcee--ee------ecccceeeecccCCCCCccccccceeeeeeeeeecCcEEE
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR   86 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~   86 (355)
                      +|+++|+.++|||||+.+|+..........  .+      .|.+.+-.....+....+...  +.+.......+..+...
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~r--g~T~d~~~~~~~~~~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERER--GVTIDVGLAKFETEKYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhC--ccCeecceEEEeeCCeE
Confidence            589999999999999999987532111000  00      001100000001111122222  22333333344455678


Q ss_pred             EEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      +.+|||||+..|...+...+..+|++++|+|+++.
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~  113 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKG  113 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence            99999999988877777778889999999999985

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.48  E-value=5.2e-13  Score=104.75  Aligned_cols=53  Identities=23%  Similarity=0.258  Sum_probs=42.4

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHH
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVA  339 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~  339 (355)
                      ++|+|-|.||+|+... .-..+.+..+.+..|+ .+|++||.+|+||++|.++|-
T Consensus        89 ~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   89 NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            5799999999999722 2234566667777787 789999999999999999884

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.46  E-value=2.1e-13  Score=136.73  Aligned_cols=152  Identities=21%  Similarity=0.221  Sum_probs=94.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||+|+|++.....                     ...+ ++...+.....+.+++.  .+.+||
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~---------------------v~~~-~gtT~d~~~~~~~~~~~--~~~liD  504 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAV---------------------VNDL-AGTTRDPVDEIVEIDGE--DWLFID  504 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccc---------------------cCCC-CCCCcCcceeEEEECCC--EEEEEE
Confidence            45899999999999999999999865211                     1111 11112333333444444  467999


Q ss_pred             cCCccc----------ccccc-cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         92 TAGQER----------FRSLI-PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        92 ~~g~~~----------~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      |||..+          |..++ ...++.+|++++|+|+++..+++....| ..+..                        
T Consensus       505 TaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~------------------------  559 (712)
T PRK09518        505 TAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD------------------------  559 (712)
T ss_pred             CCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH------------------------
Confidence            999632          11111 2346789999999999998887766533 33321                        


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehh--hhhh-hhhccCeEEEEeeeeeccccceEEE
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE--EGER-KAKELNVMFIETSAKAGYNVKQVRL  232 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~--~~~~-~~~~~~~~~~~~sa~~~~~v~~i~~  232 (355)
                                          .+.|+++|+||+|+.+.......  .... +......++..+|+.++.+++.++.
T Consensus       560 --------------------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~  614 (712)
T PRK09518        560 --------------------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAP  614 (712)
T ss_pred             --------------------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHH
Confidence                                27899999999998643211100  0111 1111235678899999998876543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.46  E-value=4.6e-13  Score=122.63  Aligned_cols=141  Identities=24%  Similarity=0.313  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +|++++|.||||||||+|+|++..      .++|           ...+.+++     ++....+.++|  +.+.+.||.
T Consensus       218 ~kvvIiG~PNvGKSSLLNaL~~~d------~AIV-----------TdI~GTTR-----Dviee~i~i~G--~pv~l~DTA  273 (454)
T COG0486         218 LKVVIIGRPNVGKSSLLNALLGRD------RAIV-----------TDIAGTTR-----DVIEEDINLNG--IPVRLVDTA  273 (454)
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC------ceEe-----------cCCCCCcc-----ceEEEEEEECC--EEEEEEecC
Confidence            899999999999999999999944      2221           23333333     55666666666  679999999


Q ss_pred             Cccccccc--------ccccccCccEEEEEEECCCcchh-hhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725         94 GQERFRSL--------IPSYIRDSTVAVVVYDITNANSF-HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS  164 (355)
Q Consensus        94 g~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
                      |..+-...        ....+.++|.+++|+|.+.+.+- +....+  .                               
T Consensus       274 GiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~--~-------------------------------  320 (454)
T COG0486         274 GIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE--L-------------------------------  320 (454)
T ss_pred             CcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH--h-------------------------------
Confidence            98654432        22347799999999999996222 221111  1                               


Q ss_pred             cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                                    ...+.|+++|.||.|+.........     .-..+.++..+|+.++.+.+.+
T Consensus       321 --------------~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L  367 (454)
T COG0486         321 --------------LPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDAL  367 (454)
T ss_pred             --------------cccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHH
Confidence                          1247999999999999764332111     1122336888999988777654

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2e-12  Score=126.88  Aligned_cols=135  Identities=21%  Similarity=0.201  Sum_probs=97.6

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc-EEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TVRLQ   88 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~   88 (355)
                      .....+|.++||-++|||||..+++...-.....+.+..+...+     +....+.  ..|++.........++ ...++
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~-----D~~e~Eq--eRGITI~saa~s~~~~~~~~iN   79 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATM-----DWMEQEQ--ERGITITSAATTLFWKGDYRIN   79 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccC-----CCcHHHH--hcCCEEeeeeeEEEEcCceEEE
Confidence            44567999999999999999999998553333333332111111     1111122  3344445555555555 58999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      ++||||+-+|.......++-+|++++|+|+...-..+...-|....+                                 
T Consensus        80 lIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~---------------------------------  126 (697)
T COG0480          80 LIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK---------------------------------  126 (697)
T ss_pred             EeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh---------------------------------
Confidence            99999999999999999999999999999999877777777765543                                 


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSD  196 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~  196 (355)
                                  .++|.+++.||.|...
T Consensus       127 ------------~~vp~i~fiNKmDR~~  142 (697)
T COG0480         127 ------------YGVPRILFVNKMDRLG  142 (697)
T ss_pred             ------------cCCCeEEEEECccccc
Confidence                        4899999999999754

>cd01850 CDC_Septin CDC/Septin

Probab=99.45  E-value=1e-12  Score=116.78  Aligned_cols=71  Identities=18%  Similarity=0.316  Sum_probs=49.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      -.++|+++|++|+|||||+|+|++..+.....+.             ........+|+........+..++..+.+.+||
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~-------------~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiD   69 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPP-------------DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVID   69 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCC-------------CccccccCCceEEEEEEEEEEECCEEEEEEEEe
Confidence            3689999999999999999999987654331100             001112345666666666666677778999999


Q ss_pred             cCCc
Q psy15725         92 TAGQ   95 (355)
Q Consensus        92 ~~g~   95 (355)
                      |||.
T Consensus        70 TpGf   73 (276)
T cd01850          70 TPGF   73 (276)
T ss_pred             cCCc
Confidence            9994

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.44  E-value=3.1e-12  Score=119.79  Aligned_cols=107  Identities=13%  Similarity=0.089  Sum_probs=66.5

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      .+.+.-+.++|+++|+.++|||||+++|++......-      ........ .+....+..+.+..+  .....+..+..
T Consensus         5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~------~~~~~~~~-~d~~~~E~~rg~Ti~--~~~~~~~~~~~   75 (396)
T PRK00049          5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG------AEAKAYDQ-IDKAPEEKARGITIN--TAHVEYETEKR   75 (396)
T ss_pred             hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccC------Ccccchhh-ccCChHHHhcCeEEe--eeEEEEcCCCe
Confidence            4566778899999999999999999999973211000      00000000 011112222333333  33344444556


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      ++.++||||+.+|.......+..+|++++|+|+.+.
T Consensus        76 ~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g  111 (396)
T PRK00049         76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG  111 (396)
T ss_pred             EEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC
Confidence            789999999987776666667788888888887663

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.6e-12  Score=124.19  Aligned_cols=86  Identities=23%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      .|+++-|+|+++-+.-  +. ..-.+.+   -++|+++++|+.|....+.+. -+...+.+..|+|++++||++|.|+++
T Consensus        82 ~D~ivnVvDAtnLeRn--Ly-ltlQLlE---~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~~  154 (653)
T COG0370          82 PDLIVNVVDATNLERN--LY-LTLQLLE---LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLEE  154 (653)
T ss_pred             CCEEEEEcccchHHHH--HH-HHHHHHH---cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence            5788888888865431  11 1223334   589999999999986555443 234567778899999999999999999


Q ss_pred             HHHHHHHHcCCCC
Q psy15725        334 LFRRVAAALPGMD  346 (355)
Q Consensus       334 l~~~l~~~i~~~~  346 (355)
                      +++.+.+..++..
T Consensus       155 l~~~i~~~~~~~~  167 (653)
T COG0370         155 LKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHhccccc
Confidence            9999998777655

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.43  E-value=6.7e-13  Score=123.27  Aligned_cols=58  Identities=22%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH-HHHHHHHHcCCCC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ-LFRRVAAALPGMD  346 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~-l~~~l~~~i~~~~  346 (355)
                      ..+|+++|+||.|+...+.    ....+.+..+..++++||+.+.|+++ +++.+.+++|...
T Consensus       216 t~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p  274 (396)
T PRK09602        216 ISKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDS  274 (396)
T ss_pred             cCCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence            4699999999999753221    11222222345799999999999999 8999999888654

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.43  E-value=9.2e-13  Score=123.49  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=68.8

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      .+.+.-+.++|+++|+.++|||||+++|++.....       |+..+..-...+....+..+.+..+  .....++.+..
T Consensus         5 ~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~-------g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~   75 (394)
T TIGR00485         5 KFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKE-------GGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENR   75 (394)
T ss_pred             hhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHh-------hcccccccccccCCHHHHhcCccee--eEEEEEcCCCE
Confidence            45566778999999999999999999998531100       0000000000111222222333333  33344555566


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      .+.+|||||+++|..........+|++++|+|+.+.
T Consensus        76 ~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g  111 (394)
T TIGR00485        76 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG  111 (394)
T ss_pred             EEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            899999999999877666667788999999999884

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.42  E-value=4.9e-13  Score=110.03  Aligned_cols=142  Identities=22%  Similarity=0.340  Sum_probs=83.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      .|+++|++|+|||||+++++++.+.....                       ++.+.+........+.   .+.+|||||
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~---~~~~~D~~g   54 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTS-----------------------KTPGKTQLINFFNVND---KFRLVDLPG   54 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeec-----------------------CCCCcceeEEEEEccC---eEEEecCCC
Confidence            38999999999999999999644322221                       1222222222222222   789999999


Q ss_pred             ccc----------cccccccccc---CccEEEEEEECCCcchh--hhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         95 QER----------FRSLIPSYIR---DSTVAVVVYDITNANSF--HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        95 ~~~----------~~~~~~~~~~---~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      ...          +......++.   ..+++++++|..+..+.  ..+..|+...                         
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-------------------------  109 (170)
T cd01876          55 YGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-------------------------  109 (170)
T ss_pred             ccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-------------------------
Confidence            532          3333444443   45788999999875322  2233444332                         


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccce--ehhhhhhhhh--ccCeEEEEeeeeeccccce
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAK--ELNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v--~~~~~~~~~~--~~~~~~~~~sa~~~~~v~~  229 (355)
                                            ..|+++++||+|+......  ..........  ....+++.+|+.++.+...
T Consensus       110 ----------------------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~  161 (170)
T cd01876         110 ----------------------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDE  161 (170)
T ss_pred             ----------------------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHH
Confidence                                  5899999999998533211  1111222221  3345788888887766553

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.42  E-value=1.8e-11  Score=100.52  Aligned_cols=86  Identities=14%  Similarity=0.070  Sum_probs=57.4

Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH---HHHHHhhcCcE--EEEecCCCCC
Q psy15725        255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE---GERKAKELNVM--FIETSAKAGY  329 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~--~~~~SA~~~~  329 (355)
                      .++++++|+..+....+. +.++-+..   .++|+++++||+|..+..+.....   ...+.....+.  ++..|+.++.
T Consensus       108 ~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~  183 (200)
T COG0218         108 KGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKK  183 (200)
T ss_pred             eEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEeccccc
Confidence            455677888766654332 44555555   689999999999987554432211   11222223333  8899999999


Q ss_pred             CHHHHHHHHHHHcCC
Q psy15725        330 NVKQLFRRVAAALPG  344 (355)
Q Consensus       330 gv~~l~~~l~~~i~~  344 (355)
                      |++++...|...+..
T Consensus       184 Gi~~l~~~i~~~~~~  198 (200)
T COG0218         184 GIDELKAKILEWLKE  198 (200)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999887754

>CHL00071 tufA elongation factor Tu

Probab=99.40  E-value=2.2e-12  Score=121.36  Aligned_cols=165  Identities=15%  Similarity=0.103  Sum_probs=98.5

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ..+-+.++|+++|++++|||||+++|++..-...      +...+.... .+....+..+.+..+.  ....+..+..++
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~------~~~~~~~~~-~d~~~~e~~rg~T~~~--~~~~~~~~~~~~   77 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKG------GAKAKKYDE-IDSAPEEKARGITINT--AHVEYETENRHY   77 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccc------ccccccccc-ccCChhhhcCCEeEEc--cEEEEccCCeEE
Confidence            3456779999999999999999999997421100      000000000 0111222223333332  233344455678


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      .++||||+.+|...+...+..+|++++|+|+.+...-+. ...+..+..                               
T Consensus        78 ~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~-------------------------------  125 (409)
T CHL00071         78 AHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ-------------------------------  125 (409)
T ss_pred             EEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------------------------------
Confidence            999999999887777778889999999999987432221 222222222                               


Q ss_pred             CccccccccccCCCccE-EEEEeecCCCCcccceeh---hhhhhhhhcc-----CeEEEEeeeeeccc
Q psy15725        168 TSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST---EEGERKAKEL-----NVMFIETSAKAGYN  226 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~v~~---~~~~~~~~~~-----~~~~~~~sa~~~~~  226 (355)
                                   .++| ++++.||.|+.+......   .+...+....     ..++..+|+..+.+
T Consensus       126 -------------~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        126 -------------VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             -------------cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence                         2678 778999999865322111   1233333322     26788888887764

>PLN03127 Elongation factor Tu; Provisional

Probab=99.40  E-value=6.5e-12  Score=118.80  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=63.0

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeec-ccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRF-MYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ..-+.++|+++|+.++|||||+++|.+....       .|... ...+ ..+....+..+.+..+.  ....++....++
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~-------~g~~~-~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i  126 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAE-------EGKAK-AVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHY  126 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHH-------hhccc-ceeeccccCChhHhhcCceeee--eEEEEcCCCeEE
Confidence            4557899999999999999999999742100       00000 0000 01222223333443343  333444555689


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      .++||||+.+|-..+...+..+|++++|+|+.+.
T Consensus       127 ~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g  160 (447)
T PLN03127        127 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG  160 (447)
T ss_pred             EEEECCCccchHHHHHHHHhhCCEEEEEEECCCC
Confidence            9999999987766555566678888888887653

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.40  E-value=2.2e-12  Score=117.21  Aligned_cols=119  Identities=18%  Similarity=0.234  Sum_probs=96.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      +.+.+.++||||+-.|.-..++.++.|.+.++++|.+.+..-+.+...+-.+..    ++-|+.|.||+||.+.+.-.  
T Consensus        74 ~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adper--  147 (603)
T COG0481          74 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPER--  147 (603)
T ss_pred             CEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHH--
Confidence            678899999999999988888889999999999999999888888777777764    78999999999997544321  


Q ss_pred             HHHHHHhhcCc---EEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCCC
Q psy15725        308 EGERKAKELNV---MFIETSAKAGYNVKQLFRRVAAALPGMDSTENKP  352 (355)
Q Consensus       308 ~~~~~~~~~~~---~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~~  352 (355)
                      -..+.-.-.|+   ..+.+|||+|.||++++++|++.||.+....+.|
T Consensus       148 vk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~p  195 (603)
T COG0481         148 VKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAP  195 (603)
T ss_pred             HHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCc
Confidence            11222333453   5899999999999999999999999998666544

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.39  E-value=1.9e-12  Score=123.46  Aligned_cols=175  Identities=19%  Similarity=0.214  Sum_probs=101.1

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCc--eeee------eccc--ceeeecccCCCCCccccccceeeeeeeee
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATI------VGKT--SLITRFMYDSFDNTYQATIGIDFLSKTMY   79 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~--~~~~------~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~   79 (355)
                      .-..++|+++|+.++|||||+++|+...-.-..  ...+      .|.+  ++-..+..+....+....+.++.....  
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~--  101 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY--  101 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence            345699999999999999999999985421110  0000      1111  111111112223333334444433333  


Q ss_pred             ecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         80 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        80 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      +.....++.+|||||++.|...+...+..+|++++|+|+.+...-+....|. .+...                      
T Consensus       102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l----------------------  158 (474)
T PRK05124        102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL----------------------  158 (474)
T ss_pred             eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh----------------------
Confidence            3445568999999999988776666789999999999998743221111111 11110                      


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehh----hhhhhhhcc----CeEEEEeeeeeccccceE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE----EGERKAKEL----NVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~----~~~~~~~~~----~~~~~~~sa~~~~~v~~i  230 (355)
                                           ...|+++++||+|+.+...-...    +...+....    ..+++.+|+.++.|+...
T Consensus       159 ---------------------g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        159 ---------------------GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ---------------------CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence                                 12478999999998642211111    111222222    478999999999988754

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.38  E-value=1.8e-12  Score=121.76  Aligned_cols=170  Identities=22%  Similarity=0.252  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCc--eeee------eccc--ceeeecccCCCCCccccccceeeeeeeeeecCc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATI------VGKT--SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR   83 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~--~~~~------~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   83 (355)
                      ++|+++|+.++|||||+++|+...-.-..  ...+      .+.+  +|...+..+...++....+..+....  .+..+
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~--~~~~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYR--YFSTD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeE--EEccC
Confidence            48999999999999999999875421110  0000      1111  12112222333333333443443333  34445


Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      ..++.+|||||+++|...+...+..+|++++|+|+.....-+....|. .+...                          
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~--------------------------  131 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL--------------------------  131 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc--------------------------
Confidence            568999999999999877777889999999999998753322222221 11110                          


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCccccee----hhhhhhhhhcc---CeEEEEeeeeeccccce
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS----TEEGERKAKEL---NVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~----~~~~~~~~~~~---~~~~~~~sa~~~~~v~~  229 (355)
                                       ...++++++||+|+.+...-.    .++...+....   ..+++.+|+.++.|+..
T Consensus       132 -----------------~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       132 -----------------GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             -----------------CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence                             123688999999986422110    11111222222   35799999999988764

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.38  E-value=2.6e-12  Score=121.57  Aligned_cols=172  Identities=19%  Similarity=0.223  Sum_probs=103.8

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCcee--ee------ecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE   81 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   81 (355)
                      .-+.++|+++|+.++|||||+.+|+...-......  .+      .++..+-..+..+....+....+.++.  ....+.
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~--~~~~~~   81 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDI--ALWKFE   81 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEE--EEEEec
Confidence            34679999999999999999999987432110000  00      000001001111222223333333333  334455


Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhh-------hHHHHHHHHhhhcCCceEEeecccccccc
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH-------QTSKWIDDVRTERGSDVIIMLVGSIETNF  154 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
                      .....++++|+||+++|...+...+..+|++|+|+|+.+. .|+       ........+..                  
T Consensus        82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~------------------  142 (447)
T PLN00043         82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT------------------  142 (447)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH------------------
Confidence            6667899999999999999999999999999999999872 332       11111111111                  


Q ss_pred             ccccccccCccccCccccccccccCCCcc-EEEEEeecCCCCcccc----e--ehhhhhhhhhccC-----eEEEEeeee
Q psy15725        155 THLSFHHANSFHQTSKWIDDVRTERGSDV-IIMLVGNKTDLSDKRQ----V--STEEGERKAKELN-----VMFIETSAK  222 (355)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~~~----v--~~~~~~~~~~~~~-----~~~~~~sa~  222 (355)
                                                .++ ++++++||+|+.+...    .  ..++...+....+     .+++++|+.
T Consensus       143 --------------------------~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~  196 (447)
T PLN00043        143 --------------------------LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGF  196 (447)
T ss_pred             --------------------------cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecc
Confidence                                      256 5788999999752110    0  1233444444443     679999999


Q ss_pred             eccccc
Q psy15725        223 AGYNVK  228 (355)
Q Consensus       223 ~~~~v~  228 (355)
                      +|.|+.
T Consensus       197 ~G~ni~  202 (447)
T PLN00043        197 EGDNMI  202 (447)
T ss_pred             cccccc
Confidence            998864

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.38  E-value=6.5e-12  Score=118.59  Aligned_cols=111  Identities=8%  Similarity=0.012  Sum_probs=60.2

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCC--CC-ccccccceeeee-----eeeee-
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF--DN-TYQATIGIDFLS-----KTMYL-   80 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~t~~~~~~~-----~~~~~-   80 (355)
                      .-++++|+++|+-..|||||+.+|++...+.....-.-|-|..+ .|.....  .+ ...++.-..+..     ..... 
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~l-Gfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKL-GYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhc-cccccccccCcccCCcccccccCCCcccccccccc
Confidence            45679999999999999999999997433221111110111000 0000000  00 000000000000     00000 


Q ss_pred             ---cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         81 ---EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        81 ---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                         ......+.++|+||++.|-..+...+..+|++++|+|+.+.
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g  153 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES  153 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence               00023689999999999888777778889999999999863

>KOG0075|consensus

Probab=99.38  E-value=1e-12  Score=100.71  Aligned_cols=120  Identities=22%  Similarity=0.367  Sum_probs=94.5

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCc---c
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDK---R  302 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~---~  302 (355)
                      ..++...+||.+|++.|+.+|..|+.+++++++|+|+.++..+.-....+..+....+ .++|+++++||.|+...   .
T Consensus        62 kgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~  141 (186)
T KOG0075|consen   62 KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI  141 (186)
T ss_pred             cCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH
Confidence            3467788999999999999999999999999999999998887777777777766555 89999999999998532   1


Q ss_pred             cCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       303 ~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      .+.........+...+-.|.+|+++..|++.+.+||+++....+
T Consensus       142 ~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~~~  185 (186)
T KOG0075|consen  142 ALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKSLR  185 (186)
T ss_pred             HHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhhhc
Confidence            12122222223344467999999999999999999998865543

>PRK09866 hypothetical protein; Provisional

Probab=99.37  E-value=4.9e-12  Score=120.40  Aligned_cols=113  Identities=16%  Similarity=0.201  Sum_probs=73.7

Q ss_pred             ccceEEEEEEeCCCccc-----ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        226 NVKQVRLQLWDTAGQER-----FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~-----~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ......+.++||||-..     ........+..+|+++||+|.+...+..+ ....+.+.... .+.|+++|.||+|+.+
T Consensus       226 l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~d  303 (741)
T PRK09866        226 ESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQD  303 (741)
T ss_pred             ccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCC
Confidence            33445678899999432     12233446899999999999987654433 22334444321 2359999999999854


Q ss_pred             cccCCHHHHHHHHh----hc---CcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        301 KRQVSTEEGERKAK----EL---NVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       301 ~~~v~~~~~~~~~~----~~---~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      ...-..+....+..    ..   ...+|++||++|.|++++++.|.+
T Consensus       304 reeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        304 RNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             cccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            22211233333321    11   237999999999999999999987

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.36  E-value=4.2e-12  Score=98.18  Aligned_cols=82  Identities=21%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|.+|||||||+|+|++......                 +.....   |...  ....+.+++  ..+.++||||
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~-----------------~~~~~~---T~~~--~~~~~~~~~--~~~~~vDtpG   56 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKV-----------------SNIPGT---TRDP--VYGQFEYNN--KKFILVDTPG   56 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEE-----------------SSSTTS---SSSE--EEEEEEETT--EEEEEEESSS
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccc-----------------cccccc---eeee--eeeeeeece--eeEEEEeCCC
Confidence            699999999999999999998432111                 111111   1111  112222333  3567999999


Q ss_pred             cccc---------cccccccccCccEEEEEEECCC
Q psy15725         95 QERF---------RSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        95 ~~~~---------~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      ...-         .......+..+|++++|+|.++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~   91 (116)
T PF01926_consen   57 INDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN   91 (116)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS
T ss_pred             CcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence            6321         1112233478999999999877

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.36  E-value=6.1e-12  Score=115.07  Aligned_cols=149  Identities=24%  Similarity=0.264  Sum_probs=96.3

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|.||||||||+|++++.+-      .+           .+..+.++...+..     .+.  .+.-.+.++|
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR------~I-----------v~~~aGTTRD~I~~-----~~e--~~~~~~~liD  232 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEER------VI-----------VSDIAGTTRDSIDI-----EFE--RDGRKYVLID  232 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCce------EE-----------ecCCCCccccceee-----eEE--ECCeEEEEEE
Confidence            569999999999999999999999541      11           13344444433332     222  3335789999


Q ss_pred             cCCccccccc-----------ccccccCccEEEEEEECCCcchhhhH--HHHHHHHhhhcCCceEEeecccccccccccc
Q psy15725         92 TAGQERFRSL-----------IPSYIRDSTVAVVVYDITNANSFHQT--SKWIDDVRTERGSDVIIMLVGSIETNFTHLS  158 (355)
Q Consensus        92 ~~g~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
                      |.|..+-...           ....+..+|.+++|+|+..+-+-+..  ..+..+                         
T Consensus       233 TAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~-------------------------  287 (444)
T COG1160         233 TAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEE-------------------------  287 (444)
T ss_pred             CCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH-------------------------
Confidence            9996432211           22345689999999999997554432  222222                         


Q ss_pred             ccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhh-----hhhccCeEEEEeeeeeccccceEE
Q psy15725        159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER-----KAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~-----~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                            .+.++++|.||+|+-.....+.++...     +..--..+.+.+|+.++.++.+++
T Consensus       288 ----------------------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~  343 (444)
T COG1160         288 ----------------------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLF  343 (444)
T ss_pred             ----------------------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHH
Confidence                                  388999999999986543223322221     112224689999999999877653

>COG2262 HflX GTPases [General function prediction only]

Probab=99.36  E-value=3.4e-11  Score=108.56  Aligned_cols=88  Identities=20%  Similarity=0.246  Sum_probs=65.4

Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                      .+|+++.|+|.+++...+.+....+-+.+-...++|+|+|+||+|+..+...    ......... ..+++||++|.|++
T Consensus       271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~----~~~~~~~~~-~~v~iSA~~~~gl~  345 (411)
T COG2262         271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI----LAELERGSP-NPVFISAKTGEGLD  345 (411)
T ss_pred             cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh----hhhhhhcCC-CeEEEEeccCcCHH
Confidence            3788899999999876666666666666655567999999999998654431    111111112 58999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy15725        333 QLFRRVAAALPGM  345 (355)
Q Consensus       333 ~l~~~l~~~i~~~  345 (355)
                      +|++.|...+...
T Consensus       346 ~L~~~i~~~l~~~  358 (411)
T COG2262         346 LLRERIIELLSGL  358 (411)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999998854

>PLN03126 Elongation factor Tu; Provisional

Probab=99.36  E-value=4.8e-12  Score=120.32  Aligned_cols=163  Identities=15%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      .-+.++|+++|+.++|||||+++|++....-.  .....++    .++ +....+....+  +.......++.+...+.+
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~--~~~~~~~----~~~-D~~~~Er~rGi--Ti~~~~~~~~~~~~~i~l  148 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMG--GSAPKKY----DEI-DAAPEERARGI--TINTATVEYETENRHYAH  148 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhc--ccccccc----ccc-cCChhHHhCCe--eEEEEEEEEecCCcEEEE
Confidence            45679999999999999999999997321000  0000000    000 11122222233  333333333444568899


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      +|+||+.+|-..+...+..+|++++|+|+.+...-+.. .++..+..                                 
T Consensus       149 iDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~-e~~~~~~~---------------------------------  194 (478)
T PLN03126        149 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ---------------------------------  194 (478)
T ss_pred             EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH---------------------------------
Confidence            99999999988887888899999999999875433322 22222322                                 


Q ss_pred             cccccccccCCCccE-EEEEeecCCCCcccceeh---hhhhhhhhcc-----CeEEEEeeeeeccc
Q psy15725        170 KWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST---EEGERKAKEL-----NVMFIETSAKAGYN  226 (355)
Q Consensus       170 ~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~v~~---~~~~~~~~~~-----~~~~~~~sa~~~~~  226 (355)
                                 .++| +++++||+|+.+......   .+...+....     ..+++.+|+.++.+
T Consensus       195 -----------~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        195 -----------VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             -----------cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence                       2677 788999999865322111   1222333322     46788888877643

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.36  E-value=1.9e-12  Score=106.30  Aligned_cols=120  Identities=18%  Similarity=0.303  Sum_probs=70.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      +-.|+++|+.|+|||+|+.+|..+...++    +               ++- .+..++.+      -....-.+.++|+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T----~---------------tS~-e~n~~~~~------~~~~~~~~~lvD~   56 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT----V---------------TSM-ENNIAYNV------NNSKGKKLRLVDI   56 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B----------------------S-SEEEECCG------SSTCGTCECEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCe----e---------------ccc-cCCceEEe------ecCCCCEEEEEEC
Confidence            34799999999999999999999643222    1               000 11111110      1122336899999


Q ss_pred             CCccccccccccc---ccCccEEEEEEECCC-cchhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         93 AGQERFRSLIPSY---IRDSTVAVVVYDITN-ANSFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        93 ~g~~~~~~~~~~~---~~~~d~ii~v~d~~~-~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      ||+.+.+......   ...+-+||||+|.+. ...+..+.. ++.-+...                              
T Consensus        57 PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~------------------------------  106 (181)
T PF09439_consen   57 PGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDT------------------------------  106 (181)
T ss_dssp             TT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred             CCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhh------------------------------
Confidence            9999887744444   778999999999985 334544443 44433321                              


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDK  197 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~  197 (355)
                               ......+|+++++||.|+...
T Consensus       107 ---------~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen  107 ---------EVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             ---------HCCTT--EEEEEEE-TTSTT-
T ss_pred             ---------hhccCCCCEEEEEeCcccccc
Confidence                     122458999999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.34  E-value=5e-12  Score=110.56  Aligned_cols=117  Identities=21%  Similarity=0.307  Sum_probs=80.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee---eecCcEEEEEE
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM---YLEDRTVRLQL   89 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~~~i   89 (355)
                      ...|+|.|.||||||||++++++.+.      .+                      -.+.|.++.+   +++.+..++++
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~Akp------Ev----------------------A~YPFTTK~i~vGhfe~~~~R~Qv  219 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKP------EV----------------------APYPFTTKGIHVGHFERGYLRIQV  219 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCC------cc----------------------CCCCccccceeEeeeecCCceEEE
Confidence            35799999999999999999998442      11                      1234444444   34456679999


Q ss_pred             EecCCcc-----ccccc---ccccc-cCccEEEEEEECCC--cchhhhHHHHHHHHhhhcCCceEEeecccccccccccc
Q psy15725         90 WDTAGQE-----RFRSL---IPSYI-RDSTVAVVVYDITN--ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLS  158 (355)
Q Consensus        90 ~D~~g~~-----~~~~~---~~~~~-~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
                      +||||.=     +.+.+   ....+ .-.++|+|+||.+.  ..+.+....++++++.+                     
T Consensus       220 IDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---------------------  278 (346)
T COG1084         220 IDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---------------------  278 (346)
T ss_pred             ecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---------------------
Confidence            9999961     11111   11112 23688999999998  46677777888888754                     


Q ss_pred             ccccCccccCccccccccccCCCccEEEEEeecCCCCcccce
Q psy15725        159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV  200 (355)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v  200 (355)
                                            -..|+++|.||.|..+....
T Consensus       279 ----------------------f~~p~v~V~nK~D~~~~e~~  298 (346)
T COG1084         279 ----------------------FKAPIVVVINKIDIADEEKL  298 (346)
T ss_pred             ----------------------cCCCeEEEEecccccchhHH
Confidence                                  14899999999998754433

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=2e-11  Score=113.51  Aligned_cols=84  Identities=19%  Similarity=0.294  Sum_probs=61.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEEEEecC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTA   93 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~   93 (355)
                      =|.++||-..||||||..+-..........-+                   +..+|-    -.+..+ ...-.+.|+|||
T Consensus         7 vVtimGHVDHGKTtLLD~IR~t~Va~~EaGGI-------------------TQhIGA----~~v~~~~~~~~~itFiDTP   63 (509)
T COG0532           7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGI-------------------TQHIGA----YQVPLDVIKIPGITFIDTP   63 (509)
T ss_pred             EEEEeCcccCCccchhhhHhcCccccccCCce-------------------eeEeee----EEEEeccCCCceEEEEcCC
Confidence            48899999999999999998865544433222                   222221    112221 123478999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      |++.|..++.....-+|.+++|+|+++.
T Consensus        64 GHeAFt~mRaRGa~vtDIaILVVa~dDG   91 (509)
T COG0532          64 GHEAFTAMRARGASVTDIAILVVAADDG   91 (509)
T ss_pred             cHHHHHHHHhcCCccccEEEEEEEccCC
Confidence            9999999999999999999999999884

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.34  E-value=6.2e-12  Score=106.57  Aligned_cols=100  Identities=21%  Similarity=0.341  Sum_probs=82.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-------------------CCCce
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-------------------GSDVI  288 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p  288 (355)
                      ..+.+.+||++|++.+..++..++.+++++|+|||+++..+++++..|+.++....                   ..++|
T Consensus        52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P  131 (202)
T cd04102          52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP  131 (202)
T ss_pred             cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce
Confidence            46889999999999999999999999999999999999999999999999986531                   24799


Q ss_pred             EEEEeeCCCCCCcccCCHHH----HHHHHhhcCcEEEEecCCC
Q psy15725        289 IMLVGNKTDLSDKRQVSTEE----GERKAKELNVMFIETSAKA  327 (355)
Q Consensus       289 iilv~nK~Dl~~~~~v~~~~----~~~~~~~~~~~~~~~SA~~  327 (355)
                      +++|+||.|+...+.+....    ...++++.+.+.++.+++.
T Consensus       132 iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~  174 (202)
T cd04102         132 LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTN  174 (202)
T ss_pred             EEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCC
Confidence            99999999997665554443    3345677888888777773

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.33  E-value=5.1e-12  Score=102.81  Aligned_cols=110  Identities=25%  Similarity=0.388  Sum_probs=85.8

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      .+.+.+||++|.+.++..+..++..++++++|+|+++..++.....|+..+.... ..++|+++|+||.|+.+....  .
T Consensus        43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~  120 (159)
T cd04159          43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--D  120 (159)
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--H
Confidence            3678899999999999999999999999999999999888877777766654432 258999999999998644322  1


Q ss_pred             HHH-HH----HhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        308 EGE-RK----AKELNVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       308 ~~~-~~----~~~~~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      ... .+    .....++++++||++|.|+++++++|.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            111 11    1123468999999999999999999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.32  E-value=8e-12  Score=123.98  Aligned_cols=174  Identities=22%  Similarity=0.240  Sum_probs=99.7

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCce--------eeeeccc--ceeeecccCCCCCccccccceeeeeeeee
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--------ATIVGKT--SLITRFMYDSFDNTYQATIGIDFLSKTMY   79 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~   79 (355)
                      ..+.++|+++|++++|||||+++|+...-.-...        ....|.|  .+-..+..+....+....+..+...  ..
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~--~~   98 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAY--RY   98 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeee--eE
Confidence            3456899999999999999999999854211100        0001110  1111111122222233333333333  33


Q ss_pred             ecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         80 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        80 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      +.....++.++||||+++|...+...+..+|++++|+|+.+...-+....+ ..+...                      
T Consensus        99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~----------------------  155 (632)
T PRK05506         99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL----------------------  155 (632)
T ss_pred             EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh----------------------
Confidence            444556788999999998877666778899999999999775322221111 111111                      


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccc--eeh--hhhhhhhhccC---eEEEEeeeeeccccce
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VST--EEGERKAKELN---VMFIETSAKAGYNVKQ  229 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--v~~--~~~~~~~~~~~---~~~~~~sa~~~~~v~~  229 (355)
                                           ...|+++++||+|+.+...  ...  .+...+....+   .+++.+|+.++.|+..
T Consensus       156 ---------------------~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        156 ---------------------GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ---------------------CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                                 1357899999999863111  110  11112222322   4689999999998764

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.30  E-value=1.2e-11  Score=105.01  Aligned_cols=98  Identities=14%  Similarity=0.205  Sum_probs=54.0

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ++||+++|++|||||||+|++++........+..            +    ....+..    ...+.. .....+.+|||
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~------------~----~~~~t~~----~~~~~~-~~~~~l~l~Dt   59 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPT------------G----VVETTMK----RTPYPH-PKFPNVTLWDL   59 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCcccc------------C----ccccccC----ceeeec-CCCCCceEEeC
Confidence            4799999999999999999999855332111111            0    0000000    001110 11236899999


Q ss_pred             CCcccccccc-----cccccCccEEEEEEECCCcchhhhH-HHHHHHHh
Q psy15725         93 AGQERFRSLI-----PSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~  135 (355)
                      ||........     ...+.++|+++++.+.    .|... ..|++.+.
T Consensus        60 pG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~  104 (197)
T cd04104          60 PGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQ  104 (197)
T ss_pred             CCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHH
Confidence            9975432222     2235678998887432    34333 34555554

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG1673|consensus

Probab=99.28  E-value=3.7e-11  Score=93.13  Aligned_cols=134  Identities=24%  Similarity=0.458  Sum_probs=106.1

Q ss_pred             hhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCc
Q psy15725        208 KAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV  287 (355)
Q Consensus       208 ~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  287 (355)
                      +....|+.+..-..  ....-.+...|||.+|++++..+.+-...++-+++|+||++.+.++.++.+|+...+......+
T Consensus        49 ~~q~~GvN~mdkt~--~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAi  126 (205)
T KOG1673|consen   49 YTQTLGVNFMDKTV--SIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAI  126 (205)
T ss_pred             HHHHhCccceeeEE--EecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccc
Confidence            33444554443321  1233467889999999999999999999999999999999999999999999999887766667


Q ss_pred             eEEEEeeCCCCC-----CcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        288 IIMLVGNKTDLS-----DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       288 piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      || +|++|-|+-     +.++.....++.+++..+.+.|+||+.++.||+.+|+.+..++-.
T Consensus       127 Pi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFn  187 (205)
T KOG1673|consen  127 PI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFN  187 (205)
T ss_pred             eE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhC
Confidence            76 789999963     223333455677888888999999999999999999998887643

>KOG0077|consensus

Probab=99.27  E-value=4.6e-12  Score=99.36  Aligned_cols=118  Identities=24%  Similarity=0.343  Sum_probs=89.6

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .-|++++|-.|+|||||++-+..... ..+.||.                   .||-.    .    +.-.++.+..+|+
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTl-------------------HPTSE----~----l~Ig~m~ftt~DL   71 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTL-------------------HPTSE----E----LSIGGMTFTTFDL   71 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccc-cccCCCc-------------------CCChH----H----heecCceEEEEcc
Confidence            45899999999999999998876443 2233332                   22221    1    1123478999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      +|+..-++.|..++..+|++++.+|+-+.+.|...+..++.+...                                   
T Consensus        72 GGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~-----------------------------------  116 (193)
T KOG0077|consen   72 GGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSD-----------------------------------  116 (193)
T ss_pred             ccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhH-----------------------------------
Confidence            999999999999999999999999999999998877666655322                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKR  198 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~  198 (355)
                           .....+|+++.+||.|.+...
T Consensus       117 -----e~la~vp~lilgnKId~p~a~  137 (193)
T KOG0077|consen  117 -----ESLATVPFLILGNKIDIPYAA  137 (193)
T ss_pred             -----HHHhcCcceeecccccCCCcc
Confidence                 233589999999999987654

>KOG0074|consensus

Probab=99.27  E-value=1e-11  Score=94.62  Aligned_cols=115  Identities=21%  Similarity=0.246  Sum_probs=93.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||.+|+...+..|+.||.+.|++|+|+|++|...++++.+.+.++.+.. ...+|+.+..||+|+.....+. 
T Consensus        60 g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-  138 (185)
T KOG0074|consen   60 GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-  138 (185)
T ss_pred             CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-
Confidence            45789999999999999999999999999999999999999999888887775544 3789999999999986443331 


Q ss_pred             HHHH----HHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        307 EEGE----RKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       307 ~~~~----~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      +.+.    ...+..-|.+.+|||.+++|+....+|+.+-..
T Consensus       139 eia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~~  179 (185)
T KOG0074|consen  139 EIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNPE  179 (185)
T ss_pred             HHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCCC
Confidence            1121    122334489999999999999999999987554

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.27  E-value=2.5e-11  Score=106.68  Aligned_cols=95  Identities=18%  Similarity=0.158  Sum_probs=68.3

Q ss_pred             cCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEE-ecC
Q psy15725        252 RDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE-TSA  325 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~-~SA  325 (355)
                      ..+.+.++++|++...   ..++......++..+..  .++|.++|+||+|+...++........+.+..++..+. +||
T Consensus       236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa  315 (369)
T COG0536         236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA  315 (369)
T ss_pred             HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeeh
Confidence            3466677788876544   35555566666655543  78999999999997655444445555566666664333 999


Q ss_pred             CCCCCHHHHHHHHHHHcCCCC
Q psy15725        326 KAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       326 ~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      .+++|+++++..+.+.+...+
T Consensus       316 ~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         316 LTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hcccCHHHHHHHHHHHHHHhh
Confidence            999999999999999988775

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.26  E-value=1.6e-11  Score=107.34  Aligned_cols=97  Identities=20%  Similarity=0.256  Sum_probs=79.4

Q ss_pred             ccccccccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcE
Q psy15725        241 ERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM  319 (355)
Q Consensus       241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~  319 (355)
                      +++..+.+.+++++|.+++|+|++++. ++..+..|+..+..   .++|+++|+||+||.+.+.+..+....+ +..+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            567778888999999999999999877 88899999987755   6899999999999975544433334334 347789


Q ss_pred             EEEecCCCCCCHHHHHHHHHHH
Q psy15725        320 FIETSAKAGYNVKQLFRRVAAA  341 (355)
Q Consensus       320 ~~~~SA~~~~gv~~l~~~l~~~  341 (355)
                      ++++||++|.||+++|+.+.+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~~~  121 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQNR  121 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcCC
Confidence            9999999999999999988754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=4.3e-11  Score=107.84  Aligned_cols=111  Identities=23%  Similarity=0.381  Sum_probs=83.2

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCC--CCC------ceeeeecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF--DNT------YQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE   81 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   81 (355)
                      ..+.++++++|+.++|||||+-||+.+.-  +..      ....-.|+.+|.-.+..+...++....+.++.....+..+
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            45789999999999999999999998642  110      0111256666666666666666655555555555555444


Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN  122 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~  122 (355)
                        ...+.++|+||+.+|-..+.....++|++|+|+|+++.+
T Consensus        84 --k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e  122 (428)
T COG5256          84 --KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE  122 (428)
T ss_pred             --CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence              357999999999999999999999999999999999863

>KOG1191|consensus

Probab=99.26  E-value=5.5e-11  Score=109.00  Aligned_cols=83  Identities=24%  Similarity=0.356  Sum_probs=56.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      ++|+++|+||||||||+|+|.....      ++|           +..+.++...+     ...+.++|  ..+.+.||.
T Consensus       269 l~iaIvGrPNvGKSSLlNaL~~~dr------sIV-----------Spv~GTTRDai-----ea~v~~~G--~~v~L~DTA  324 (531)
T KOG1191|consen  269 LQIAIVGRPNVGKSSLLNALSREDR------SIV-----------SPVPGTTRDAI-----EAQVTVNG--VPVRLSDTA  324 (531)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCc------eEe-----------CCCCCcchhhh-----eeEeecCC--eEEEEEecc
Confidence            7899999999999999999999542      221           33444444333     34444445  678899999


Q ss_pred             Cccccc-c--------cccccccCccEEEEEEECCC
Q psy15725         94 GQERFR-S--------LIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        94 g~~~~~-~--------~~~~~~~~~d~ii~v~d~~~  120 (355)
                      |..+-. .        .....+..+|++++|+|+..
T Consensus       325 GiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~  360 (531)
T KOG1191|consen  325 GIREESNDGIEALGIERARKRIERADVILLVVDAEE  360 (531)
T ss_pred             ccccccCChhHHHhHHHHHHHHhhcCEEEEEecccc
Confidence            975511 1        12233568899999999843

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.26  E-value=1.3e-11  Score=98.97  Aligned_cols=98  Identities=18%  Similarity=0.196  Sum_probs=73.5

Q ss_pred             EEEeCCCc-----ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        233 QLWDTAGQ-----ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       233 ~i~D~~g~-----~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      .++|++|.     ..++.+.. .+.++|++++|+|++++.++.. ..|...+      ..|+++|+||+|+.+ +....+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~  108 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIE  108 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHH
Confidence            57999997     23444433 4789999999999999988755 2343321      349999999999864 334455


Q ss_pred             HHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHH
Q psy15725        308 EGERKAKELNV-MFIETSAKAGYNVKQLFRRVA  339 (355)
Q Consensus       308 ~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~  339 (355)
                      +..++++..+. +++++||++|.|++++|++|.
T Consensus       109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            55666666665 899999999999999999985

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.26  E-value=1.4e-11  Score=123.61  Aligned_cols=107  Identities=21%  Similarity=0.181  Sum_probs=70.9

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC---ccccccceeeeeeeeeecCcEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN---TYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ....||+++|+.++|||||+++|+...-...  ....+.+ .     ...+..   ....|+...........++....+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~--~~~~~~~-~-----~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i   88 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMIS--EELAGQQ-L-----YLDFDEQEQERGITINAANVSMVHEYEGNEYLI   88 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCc--hhcCCce-e-----ecCCCHHHHhhcchhhcccceeEEeecCCceEE
Confidence            3457999999999999999999987421100  0010110 0     011111   122244433334344466778899


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      ++|||||+.+|.......++.+|++++|+|+.+....+
T Consensus        89 ~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~  126 (720)
T TIGR00490        89 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ  126 (720)
T ss_pred             EEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCcc
Confidence            99999999999888888999999999999998753333

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.26  E-value=3.6e-11  Score=113.93  Aligned_cols=111  Identities=19%  Similarity=0.261  Sum_probs=70.2

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCcee--------eeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--------TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL   80 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~   80 (355)
                      ..-+.++|+++|+.++|||||+.+|+...-.-....        .-.++..+-..+..+....+....+..+  .....+
T Consensus         3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid--~~~~~~   80 (446)
T PTZ00141          3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITID--IALWKF   80 (446)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEE--eeeEEE
Confidence            345779999999999999999999987321100000        0001111000001122222223333333  333445


Q ss_pred             cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      ..+...++++||||+.+|...+...+..+|++++|+|+.+.
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G  121 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG  121 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence            56677899999999999988888889999999999999874

>KOG0096|consensus

Probab=99.25  E-value=1.9e-11  Score=98.15  Aligned_cols=130  Identities=28%  Similarity=0.496  Sum_probs=106.7

Q ss_pred             ccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEE
Q psy15725        211 ELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM  290 (355)
Q Consensus       211 ~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii  290 (355)
                      ..++...++...+..+  .+.+..||+.|++.+..+..-+|-.+.+.|++||++...++..+..|...+..-. .++||+
T Consensus        42 t~Gv~~~pl~f~tn~g--~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv  118 (216)
T KOG0096|consen   42 TLGVEVHPLLFDTNRG--QIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIV  118 (216)
T ss_pred             cceeEEeeeeeecccC--cEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCee
Confidence            3455566665555444  7899999999999999999999999999999999999999999999999987776 579999


Q ss_pred             EEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       291 lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +++||.|..+.. + ..+...+-+...+.++++||+.+.|.+.-|-|+++++-..
T Consensus       119 ~cGNKvDi~~r~-~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~  171 (216)
T KOG0096|consen  119 LCGNKVDIKARK-V-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGD  171 (216)
T ss_pred             eeccceeccccc-c-ccccceeeecccceeEEeecccccccccchHHHhhhhcCC
Confidence            999999986443 1 1222344455668999999999999999999999988654

>cd04171 SelB SelB subfamily

Probab=99.24  E-value=4.1e-11  Score=98.22  Aligned_cols=109  Identities=17%  Similarity=0.131  Sum_probs=75.0

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC--CH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--ST  306 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~  306 (355)
                      ...+.+|||+|++.+......++.++|++++|+|+++....+. ...+..+...  ...|+++++||+|+.+....  ..
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~  126 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQT-REHLEILELL--GIKRGLVVLTKADLVDEDWLELVE  126 (164)
T ss_pred             CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhH-HHHHHHHHHh--CCCcEEEEEECccccCHHHHHHHH
Confidence            3468899999999887766677889999999999987432221 1222222221  22499999999999644211  11


Q ss_pred             HHHHHHHhh---cCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        307 EEGERKAKE---LNVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       307 ~~~~~~~~~---~~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      .+.....+.   .+++++++||++|.|++++++.+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         127 EEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            222233333   3579999999999999999999865

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PLN00023 GTP-binding protein; Provisional

Probab=99.24  E-value=4.1e-11  Score=106.82  Aligned_cols=90  Identities=19%  Similarity=0.398  Sum_probs=78.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC------------CCceEEEEeeC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG------------SDVIIMLVGNK  295 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piilv~nK  295 (355)
                      ..+.+.|||++|++.|+.+++.++.+++++|+|||+++..+++++..|++.+.....            .++|++||+||
T Consensus        81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK  160 (334)
T PLN00023         81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK  160 (334)
T ss_pred             ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence            468899999999999999999999999999999999999999999999999976531            35899999999


Q ss_pred             CCCCCcc---c---CCHHHHHHHHhhcC
Q psy15725        296 TDLSDKR---Q---VSTEEGERKAKELN  317 (355)
Q Consensus       296 ~Dl~~~~---~---v~~~~~~~~~~~~~  317 (355)
                      +||...+   .   +..+++..+++..+
T Consensus       161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~g  188 (334)
T PLN00023        161 ADIAPKEGTRGSSGNLVDAARQWVEKQG  188 (334)
T ss_pred             ccccccccccccccccHHHHHHHHHHcC
Confidence            9996543   2   35788888988877

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.23  E-value=5.2e-11  Score=102.19  Aligned_cols=120  Identities=18%  Similarity=0.281  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|+.+|||||+.+-+..+..+...                    ....+|+.++.....  . ...+.+++||+||
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT--------------------~~L~~T~~ve~~~v~--~-~~~~~l~iwD~pG   57 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDT--------------------LRLEPTIDVEKSHVR--F-LSFLPLNIWDCPG   57 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGG--------------------GG-----SEEEEEEE--C-TTSCEEEEEEE-S
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhc--------------------cccCCcCCceEEEEe--c-CCCcEEEEEEcCC
Confidence            7999999999999998777663321110                    011234433322221  1 3346899999999


Q ss_pred             cccccc-----cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         95 QERFRS-----LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        95 ~~~~~~-----~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      +..+-.     .+...++++.++|+|+|+...+..+.+.++..-+.++.                               
T Consensus        58 q~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~-------------------------------  106 (232)
T PF04670_consen   58 QDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALR-------------------------------  106 (232)
T ss_dssp             SCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHH-------------------------------
T ss_pred             ccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHH-------------------------------
Confidence            965433     46677899999999999996655555666555555431                               


Q ss_pred             cccccccccCCCccEEEEEeecCCCCc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSD  196 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~  196 (355)
                              ...+++.+-+...|.|+..
T Consensus       107 --------~~sp~~~v~vfiHK~D~l~  125 (232)
T PF04670_consen  107 --------QYSPNIKVFVFIHKMDLLS  125 (232)
T ss_dssp             --------HHSTT-EEEEEEE-CCCS-
T ss_pred             --------HhCCCCeEEEEEeecccCC
Confidence                    2245889999999999854

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0465|consensus

Probab=99.22  E-value=2.6e-11  Score=113.27  Aligned_cols=274  Identities=18%  Similarity=0.157  Sum_probs=144.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.-+|.++-+-.+||||+-+|++.-.--..+...+.++...+     +....+...  |+..........++..+++++|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~m-----d~m~~er~r--gITiqSAAt~~~w~~~~iNiID  110 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATM-----DSMELERQR--GITIQSAATYFTWRDYRINIID  110 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceee-----ehHHHHHhc--CceeeeceeeeeeccceeEEec
Confidence            456899999999999999999987432222222222221111     111222222  3333344444455678999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||+-+|.-.....++.-|+.++|+|+...-.-+...-|... ++                                   
T Consensus       111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r-----------------------------------  154 (721)
T KOG0465|consen  111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR-----------------------------------  154 (721)
T ss_pred             CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh-----------------------------------
Confidence            999999999999999999999999999886555656666443 22                                   


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeE--EEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM--FIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~--~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                               .++|.+..+||.|.....-  .....++..+++.+  ++++..-    .+..+.-+.|....      ..-
T Consensus       155 ---------y~vP~i~FiNKmDRmGa~~--~~~l~~i~~kl~~~~a~vqiPig----~e~~f~GvvDlv~~------kai  213 (721)
T KOG0465|consen  155 ---------YNVPRICFINKMDRMGASP--FRTLNQIRTKLNHKPAVVQIPIG----SESNFKGVVDLVNG------KAI  213 (721)
T ss_pred             ---------cCCCeEEEEehhhhcCCCh--HHHHHHHHhhcCCchheeEcccc----ccccchhHHhhhhc------eEE
Confidence                     3899999999999754321  11222222222211  1111111    11111111111100      001


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC---CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK  326 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~  326 (355)
                      +..+.++-.+..+--.........+...++.+...   +.+--..+.+| + .+.+.+.....+...++.+.|++..||.
T Consensus       214 ~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~-~-ps~~~l~~aIRr~Ti~r~fvPVl~GSAl  291 (721)
T KOG0465|consen  214 YWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEE-E-PSAQQLKAAIRRATIKRSFVPVLCGSAL  291 (721)
T ss_pred             EEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccC-C-CCHHHHHHHHHHHHhhcceeeEEechhh
Confidence            11122222222221111111112222222222110   00000000000 0 1122222222233344556799999999


Q ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCC
Q psy15725        327 AGYNVKQLFRRVAAALPGMDSTENK  351 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~~~~~~~~  351 (355)
                      +|.||+.++|++++++|++.+..+.
T Consensus       292 KNkGVQPlLDAVvdYLPsP~Ev~n~  316 (721)
T KOG0465|consen  292 KNKGVQPLLDAVVDYLPSPSEVENY  316 (721)
T ss_pred             cccCcchHHHHHHHhCCChhhhccc
Confidence            9999999999999999999876654

>KOG1489|consensus

Probab=99.21  E-value=5.6e-11  Score=103.20  Aligned_cols=149  Identities=21%  Similarity=0.292  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCC-CCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ..|.+||-||+|||||++++...+      |.+            .++ -.+..|+++      ++.+++. .++.+-|.
T Consensus       197 advGLVG~PNAGKSTLL~als~AK------pkV------------a~YaFTTL~P~iG------~v~yddf-~q~tVADi  251 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAK------PKV------------AHYAFTTLRPHIG------TVNYDDF-SQITVADI  251 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccC------Ccc------------cccceeeeccccc------eeecccc-ceeEeccC
Confidence            468899999999999999999854      222            111 122355555      2223332 34899999


Q ss_pred             CCccc----cccccccc---ccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeecccccccccccccccc
Q psy15725         93 AGQER----FRSLIPSY---IRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA  162 (355)
Q Consensus        93 ~g~~~----~~~~~~~~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
                      ||.-+    -+.+-..+   +..+++.+||+|++..   +-+++++.+..++..+.                        
T Consensus       252 PGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye------------------------  307 (366)
T KOG1489|consen  252 PGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE------------------------  307 (366)
T ss_pred             ccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh------------------------
Confidence            99632    22333333   4579999999999998   77788877777776543                        


Q ss_pred             CccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeeccccce
Q psy15725        163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQ  229 (355)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~  229 (355)
                                     ......|.++|+||.|++...   .....++++.... .++.+||..+.+...
T Consensus       308 ---------------k~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~  357 (366)
T KOG1489|consen  308 ---------------KGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEE  357 (366)
T ss_pred             ---------------hhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccccchHH
Confidence                           334588999999999985211   1112455555554 489999998877654

>KOG3905|consensus

Probab=99.21  E-value=1.9e-10  Score=100.07  Aligned_cols=99  Identities=22%  Similarity=0.392  Sum_probs=66.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec--CcEEEEEEE
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE--DRTVRLQLW   90 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~   90 (355)
                      .-+|+|+|+.++|||||+.+|.+-.                          +..+..+..+....++-+  ....++.+|
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e--------------------------~~KkgsgLeY~yl~V~de~RDd~tr~~VW  105 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE--------------------------TVKKGSGLEYLYLHVHDEDRDDLTRCNVW  105 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc--------------------------ccCCCCCcceEEEecccccchhhhhcceE
Confidence            4689999999999999999998722                          223333333333333222  234578889


Q ss_pred             ecCCcccccccccccccC----ccEEEEEEECCCcch-hhhHHHHHHHHhhh
Q psy15725         91 DTAGQERFRSLIPSYIRD----STVAVVVYDITNANS-FHQTSKWIDDVRTE  137 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~----~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~  137 (355)
                      =+-|.-....+....+..    -..+|++.|++++.. ++.++.|..-+..+
T Consensus       106 iLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~eh  157 (473)
T KOG3905|consen  106 ILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREH  157 (473)
T ss_pred             EecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence            888765555554444332    257899999999955 47889998877643

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.21  E-value=6.7e-11  Score=100.15  Aligned_cols=113  Identities=20%  Similarity=0.256  Sum_probs=80.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC-CH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-ST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~  306 (355)
                      ....+.+||++|++.|...+..++..+|++++|+|+++... .....++..+..   .++|+++|+||+|+...+.. ..
T Consensus        63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~  138 (194)
T cd01891          63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVV  138 (194)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-HHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHH
Confidence            35678999999999999999999999999999999987532 222333444433   57999999999998643211 12


Q ss_pred             HHHHHHHh-------hcCcEEEEecCCCCCCH----------HHHHHHHHHHcCC
Q psy15725        307 EEGERKAK-------ELNVMFIETSAKAGYNV----------KQLFRRVAAALPG  344 (355)
Q Consensus       307 ~~~~~~~~-------~~~~~~~~~SA~~~~gv----------~~l~~~l~~~i~~  344 (355)
                      ++...+.+       ..+++++++||++|.|+          ++|++.|..++|.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~  193 (194)
T cd01891         139 DEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA  193 (194)
T ss_pred             HHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCCC
Confidence            22233321       23679999999999555          5677777777764

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00066 G-alpha G protein alpha subunit

Probab=99.19  E-value=4.5e-12  Score=115.10  Aligned_cols=119  Identities=20%  Similarity=0.276  Sum_probs=89.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHhhcC-CCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA----------NSFHQTSKWIDDVRTERG-SDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piilv~nK~  296 (355)
                      +.+.+.+||++|+...+..|..++.++++++||+|+++.          ..+++....++.+..... .++|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            467788999999999999999999999999999999874          445555556666655433 789999999999


Q ss_pred             CCCCc--------------c--cCCHHHHHHHHhh----------cCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        297 DLSDK--------------R--QVSTEEGERKAKE----------LNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       297 Dl~~~--------------~--~v~~~~~~~~~~~----------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      |+..+              .  .-....+..+...          ..+.+++++|..-.++..+|+.+.+.|....
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            97311              0  1223344433221          3367889999999999999999999887544

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0090|consensus

Probab=99.16  E-value=3.1e-10  Score=93.17  Aligned_cols=115  Identities=20%  Similarity=0.296  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      -.|+++|..+||||+|+-+|..+.+.    +|+                   .     ...+....+..+.-...++|.|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----~Tv-------------------t-----Siepn~a~~r~gs~~~~LVD~P   90 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHR----GTV-------------------T-----SIEPNEATYRLGSENVTLVDLP   90 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCcc----Cee-------------------e-----eeccceeeEeecCcceEEEeCC
Confidence            46999999999999999999886432    222                   0     1111111111122237899999


Q ss_pred             Cccccccccccccc---CccEEEEEEECCCc-chhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         94 GQERFRSLIPSYIR---DSTVAVVVYDITNA-NSFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        94 g~~~~~~~~~~~~~---~~d~ii~v~d~~~~-~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |+++.+.-...++.   .+-+++||+|...- .....+.. ++.-+..-                               
T Consensus        91 GH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~-------------------------------  139 (238)
T KOG0090|consen   91 GHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDS-------------------------------  139 (238)
T ss_pred             CcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhh-------------------------------
Confidence            99988776666665   78999999998762 23344433 33333211                               


Q ss_pred             ccccccccccCCCccEEEEEeecCCCC
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLS  195 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~  195 (355)
                              ......+|+++.+||.|+.
T Consensus       140 --------~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  140 --------RVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             --------ccccCCCCEEEEecchhhh
Confidence                    1135689999999999984

>KOG3883|consensus

Probab=99.13  E-value=1.2e-09  Score=84.70  Aligned_cols=136  Identities=23%  Similarity=0.311  Sum_probs=111.3

Q ss_pred             EEEeeeeeccccceEEEEEEeCCCcccc-cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEe
Q psy15725        216 FIETSAKAGYNVKQVRLQLWDTAGQERF-RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVG  293 (355)
Q Consensus       216 ~~~~sa~~~~~v~~i~~~i~D~~g~~~~-~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~  293 (355)
                      ++..|..++.+.. -.+.+.||.|-..+ ..+..+++.-+|++++|++..++++|+.+....+.|..... ..+||++++
T Consensus        47 iY~~svet~rgar-E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLa  125 (198)
T KOG3883|consen   47 IYVASVETDRGAR-EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLA  125 (198)
T ss_pred             heeEeeecCCChh-heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEe
Confidence            4445555655533 36789999996665 66788889999999999999999999987666666655443 579999999


Q ss_pred             eCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCCC
Q psy15725        294 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKP  352 (355)
Q Consensus       294 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~~  352 (355)
                      ||+|+.+++.+..+-+..+++...+..++++|+....+-|.|-+|...+-.+-.++..|
T Consensus       126 N~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fp  184 (198)
T KOG3883|consen  126 NKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFP  184 (198)
T ss_pred             chhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCcccccCc
Confidence            99999999999999999999999999999999999999999999999887766555443

>KOG0393|consensus

Probab=99.13  E-value=3.6e-10  Score=93.31  Aligned_cols=85  Identities=36%  Similarity=0.622  Sum_probs=74.6

Q ss_pred             eEEEEeeeeeccc-cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEE
Q psy15725        214 VMFIETSAKAGYN-VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIML  291 (355)
Q Consensus       214 ~~~~~~sa~~~~~-v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piil  291 (355)
                      ..|...++..... ...+.+.+|||+|++.|..+++..|+.+|++++||++.++.+++++ .+|+.++..+. ++.|+||
T Consensus        36 TVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiL  114 (198)
T KOG0393|consen   36 TVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIIL  114 (198)
T ss_pred             eEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEE
Confidence            3444555555553 6788899999999999999999999999999999999999999996 57999999988 8999999


Q ss_pred             EeeCCCCC
Q psy15725        292 VGNKTDLS  299 (355)
Q Consensus       292 v~nK~Dl~  299 (355)
                      ||+|.||.
T Consensus       115 VGtk~DLr  122 (198)
T KOG0393|consen  115 VGTKADLR  122 (198)
T ss_pred             EeehHHhh
Confidence            99999996

>smart00275 G_alpha G protein alpha subunit

Probab=99.12  E-value=5.5e-12  Score=115.38  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=87.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA----------NSFHQTSKWIDDVRTER-GSDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piilv~nK~  296 (355)
                      ..+.+.+||.+|+..++..|..++.++++++||+|+++.          ..+++....++.+.... ..++|+++++||.
T Consensus       182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~  261 (342)
T smart00275      182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI  261 (342)
T ss_pred             CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence            456678999999999999999999999999999999863          35555556666665543 3789999999999


Q ss_pred             CCCCc--------------c-cCCHHHHHHHHhh-----------cCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        297 DLSDK--------------R-QVSTEEGERKAKE-----------LNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       297 Dl~~~--------------~-~v~~~~~~~~~~~-----------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      |+...              . .-....+..+...           ..+..+.+||..-.++..+|+.+...|....
T Consensus       262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            98321              0 0122233332211           2357789999999999999999988887543

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.12  E-value=4.3e-10  Score=114.80  Aligned_cols=35  Identities=37%  Similarity=0.381  Sum_probs=32.2

Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCC
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      .+.||||||++.|..++...+..+|++++|+|+++
T Consensus       527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~  561 (1049)
T PRK14845        527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINE  561 (1049)
T ss_pred             cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcc
Confidence            38999999999998888888889999999999987

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.12  E-value=1.7e-09  Score=97.90  Aligned_cols=103  Identities=12%  Similarity=0.094  Sum_probs=61.4

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC---CH
Q psy15725        230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV---ST  306 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v---~~  306 (355)
                      +.+.++||+|-..-...   ....+|.++++.+......++..   ...+.+     ...++|.||+|+.+....   ..
T Consensus       149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~---k~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI---KKGIME-----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH---Hhhhhh-----hhheEEeehhcccchhHHHHHHH
Confidence            44557777774422211   35569999998764444333322   222333     224899999998643211   11


Q ss_pred             HHHHHHHh------hcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        307 EEGERKAK------ELNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       307 ~~~~~~~~------~~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      +....+..      .+..|++++||+++.||+++++.|.+..+
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            11111111      11248999999999999999999999876

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.12  E-value=1.9e-10  Score=117.26  Aligned_cols=116  Identities=16%  Similarity=0.199  Sum_probs=71.9

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee---------
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---------   80 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---------   80 (355)
                      +.+-.+|+|+|+.++|||||+++|+...-.-.  ....+.+.    ++ +....+....+.+......+.+         
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~--~~~~g~~~----~~-D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~   88 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIA--QEVAGDVR----MT-DTRADEAERGITIKSTGISLYYEMTDESLKD   88 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcc--cccCCcee----ec-cCcHHHHHhCCceecceeEEEeecccccccc
Confidence            34456999999999999999999997542111  01111111    11 1111112222222221122222         


Q ss_pred             -----cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHH
Q psy15725         81 -----EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID  132 (355)
Q Consensus        81 -----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~  132 (355)
                           ..+...++++||||+.+|...+...++.+|++|+|+|+.+.-..+....|..
T Consensus        89 ~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~  145 (843)
T PLN00116         89 FKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ  145 (843)
T ss_pred             cccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH
Confidence                 2236789999999999999988889999999999999998655544444433

>PTZ00416 elongation factor 2; Provisional

Probab=99.11  E-value=2.2e-10  Score=116.61  Aligned_cols=113  Identities=19%  Similarity=0.254  Sum_probs=70.1

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec--------C
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE--------D   82 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--------~   82 (355)
                      .+-.+|+++|+.++|||||+++|+...-.-.  ....|.+    +++ +....+....+.+......+.++        +
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~--~~~~g~~----~~~-D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~   89 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIIS--SKNAGDA----RFT-DTRADEQERGITIKSTGISLYYEHDLEDGDDK   89 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcc--cccCCce----eec-ccchhhHhhcceeeccceEEEeecccccccCC
Confidence            3445999999999999999999998431110  0011111    111 12222222233222222222222        2


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  130 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  130 (355)
                      +...++++||||+.+|.......++.+|++|+|+|+.+.-..+...-|
T Consensus        90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~  137 (836)
T PTZ00416         90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL  137 (836)
T ss_pred             CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH
Confidence            357899999999999988888889999999999999886444433333

>KOG0082|consensus

Probab=99.09  E-value=7.3e-12  Score=112.25  Aligned_cols=122  Identities=19%  Similarity=0.294  Sum_probs=90.7

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc----------cHHHHHHHHHHHHhhc-CCCceEEEEeeC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN----------SFHQTSKWIDDVRTER-GSDVIIMLVGNK  295 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~piilv~nK  295 (355)
                      .......++|.+|+...+..|.+++.++++++||++++...          .+..-.+.++.+.+.. ..+.++||.+||
T Consensus       192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK  271 (354)
T KOG0082|consen  192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK  271 (354)
T ss_pred             eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence            44578889999999999999999999999999999987533          2333345666665544 488999999999


Q ss_pred             CCCCCc--------------cc-CCHHHHHHHHhh----------cCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        296 TDLSDK--------------RQ-VSTEEGERKAKE----------LNVMFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       296 ~Dl~~~--------------~~-v~~~~~~~~~~~----------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      .||-.+              .. ...+++..+.+.          ..+.+..++|..-.+|+.+|+++.+.|...+.+
T Consensus       272 ~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk  349 (354)
T KOG0082|consen  272 KDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLK  349 (354)
T ss_pred             HHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence            998321              11 233344443321          236788999999999999999999998766543

>KOG1145|consensus

Probab=99.09  E-value=4.2e-10  Score=104.29  Aligned_cols=143  Identities=20%  Similarity=0.272  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      --|-|+|+-..||||||..|.+........+-+                   +..+|    .-.+.++ +.-.+.|.|||
T Consensus       154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGI-------------------TQhIG----AF~V~~p-~G~~iTFLDTP  209 (683)
T KOG1145|consen  154 PVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGI-------------------TQHIG----AFTVTLP-SGKSITFLDTP  209 (683)
T ss_pred             CeEEEeecccCChhhHHHHHhhCceehhhcCCc-------------------cceec----eEEEecC-CCCEEEEecCC
Confidence            347789999999999999998855433322211                   11222    1222233 22578999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |+..|..++......+|.+++|+.+.|.   ++.+.+.       .                                  
T Consensus       210 GHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk-------h----------------------------------  248 (683)
T KOG1145|consen  210 GHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK-------H----------------------------------  248 (683)
T ss_pred             cHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH-------H----------------------------------
Confidence            9999999999999999999999999984   3443332       1                                  


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhh------hcc--CeEEEEeeeeeccccceE
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA------KEL--NVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~------~~~--~~~~~~~sa~~~~~v~~i  230 (355)
                             .+..++|+|+..||+|.+...  ......++.      +.+  .+.++++|+.++.|.+.+
T Consensus       249 -------Ak~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L  307 (683)
T KOG1145|consen  249 -------AKSANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLL  307 (683)
T ss_pred             -------HHhcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHH
Confidence                   122489999999999975421  111111111      222  368899999999988764

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.08  E-value=7.3e-10  Score=95.57  Aligned_cols=117  Identities=43%  Similarity=0.609  Sum_probs=92.1

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc-----
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS-FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-----  302 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----  302 (355)
                      .+.+.+||++|++.++.+++.++.+++++++|+|.++..+ .+....|...+......+.|+++++||+|+....     
T Consensus        53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~  132 (219)
T COG1100          53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEE  132 (219)
T ss_pred             EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHH
Confidence            6778999999999999999999999999999999999554 4446789999888765679999999999997543     


Q ss_pred             -------cCCHHHHHHHHhh---cCcEEEEecCC--CCCCHHHHHHHHHHHcCCC
Q psy15725        303 -------QVSTEEGERKAKE---LNVMFIETSAK--AGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       303 -------~v~~~~~~~~~~~---~~~~~~~~SA~--~~~gv~~l~~~l~~~i~~~  345 (355)
                             .............   ....++++||+  ++.||+++|..+++.+...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         133 ILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             HHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence                   2222222222211   12348999999  9999999999999998643

>PRK13768 GTPase; Provisional

Probab=99.06  E-value=4.6e-10  Score=98.71  Aligned_cols=114  Identities=22%  Similarity=0.182  Sum_probs=71.9

Q ss_pred             EEEEEeCCCcccc---ccccccccc---C--CcEEEEEEeCCCcccHHHHH--HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        231 RLQLWDTAGQERF---RSLIPSYIR---D--STVAVVVYDITNANSFHQTS--KWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       231 ~~~i~D~~g~~~~---~~~~~~~~~---~--~~~vi~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ...++|++|+...   +..+..+++   .  .+++++++|.+...+..+..  .|+..... ...++|+++|+||+|+.+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhcC
Confidence            4568999996553   333322222   2  78999999997655444432  22222221 125899999999999865


Q ss_pred             cccCCHHHH-----------------------H---HHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        301 KRQVSTEEG-----------------------E---RKAKELN--VMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       301 ~~~v~~~~~-----------------------~---~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .........                       .   +..+..+  .+++++||+++.|+++++++|.+.++.-
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~  249 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG  249 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence            432211000                       0   1112233  4899999999999999999999998753

>TIGR00101 ureG urease accessory protein UreG

Probab=99.05  E-value=3.6e-09  Score=89.54  Aligned_cols=82  Identities=21%  Similarity=0.136  Sum_probs=52.5

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh--hcCcEEEEecCCCCCCH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK--ELNVMFIETSAKAGYNV  331 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~~SA~~~~gv  331 (355)
                      ++.++.|+|+.+......  .....      -...-++++||+|+.....-......+..+  +.+.+++++||++|+|+
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~~q------i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi  184 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGGPG------ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGL  184 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhHhH------hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCH
Confidence            466889999886554321  11111      123358999999997321111222222222  34479999999999999


Q ss_pred             HHHHHHHHHHcC
Q psy15725        332 KQLFRRVAAALP  343 (355)
Q Consensus       332 ~~l~~~l~~~i~  343 (355)
                      +++|++|.++..
T Consensus       185 ~el~~~i~~~~~  196 (199)
T TIGR00101       185 DTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHhhcC
Confidence            999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.05  E-value=7.5e-10  Score=86.26  Aligned_cols=93  Identities=27%  Similarity=0.408  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|+.|||||+|+.|+....+...+.  +                    +|++                       
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~--~--------------------~t~~-----------------------   35 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPT--V--------------------FTIG-----------------------   35 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCc--e--------------------ehhh-----------------------
Confidence            589999999999999999997754432211  0                    2222                       


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                          +........+.++.+++|++..++++++.+  |...+...                                    
T Consensus        36 ----~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~------------------------------------   73 (124)
T smart00010       36 ----IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVG------------------------------------   73 (124)
T ss_pred             ----hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhc------------------------------------
Confidence                222334557788999999999999998766  77666432                                    


Q ss_pred             cccccCCCccEEEEEeecCCCCccc
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKR  198 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~  198 (355)
                           ...++|.++++||.|+....
T Consensus        74 -----~k~dl~~~~~~nk~dl~~~~   93 (124)
T smart00010       74 -----NKSDLPILVGGNRDVLEEER   93 (124)
T ss_pred             -----CCCCCcEEEEeechhhHhhC
Confidence                 12368899999999985433

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.05  E-value=1.7e-09  Score=102.10  Aligned_cols=101  Identities=22%  Similarity=0.392  Sum_probs=70.2

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccc--cceeeeeeeeeecCcEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT--IGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~   88 (355)
                      .+.-.|+|+|..++|||||+.+|.+..                          .+.++  .+|.|....-.......+++
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e--------------------------~~~~~~aLeYty~~v~d~~~dd~~rl~   76 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE--------------------------DPKKGLALEYTYLDVKDEDRDDLARLN   76 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC--------------------------CCCCCcccceEEEeeccCcCCcCceee
Confidence            455789999999999999999986522                          12223  33333332211112345789


Q ss_pred             EEecCCcccccccccccccC----ccEEEEEEECCCcchh-hhHHHHHHHHhhh
Q psy15725         89 LWDTAGQERFRSLIPSYIRD----STVAVVVYDITNANSF-HQTSKWIDDVRTE  137 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~  137 (355)
                      +|-+.|...+..+....+..    --.||+|+|++.|..+ +.+..|+..++.+
T Consensus        77 vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~  130 (472)
T PF05783_consen   77 VWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREH  130 (472)
T ss_pred             EEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHH
Confidence            99999877777766555442    3578999999999887 6789999888754

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.04  E-value=4.2e-10  Score=113.34  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=70.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeee--eeeecCcEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSK--TMYLEDRTVRLQ   88 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~   88 (355)
                      .+-.+|+++|+.++|||||+.+|+...-....  ...|.+.    ++ +....+....+.+.....  .+..++....++
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~--~~~g~~~----~~-D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~   90 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISE--ELAGEQL----AL-DFDEEEQARGITIKAANVSMVHEYEGKEYLIN   90 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcch--hhcCcce----ec-CccHHHHHhhhhhhccceEEEEEecCCcEEEE
Confidence            34568999999999999999999874321110  0111110    00 111111112222222212  222344568899


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHH
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI  131 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~  131 (355)
                      ++||||+.+|.......++.+|++++|+|+......+....|.
T Consensus        91 liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~  133 (731)
T PRK07560         91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR  133 (731)
T ss_pred             EEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH
Confidence            9999999999888888899999999999998754444334443

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.03  E-value=1.1e-08  Score=87.40  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=41.3

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHHhh--cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKE--LNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      +.|.++++||+|+.+.............+.  .+++++++||++|.|++++|+++.++.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            567899999999964322222233333333  337999999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.03  E-value=4e-10  Score=96.49  Aligned_cols=96  Identities=18%  Similarity=0.269  Sum_probs=62.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      -+.++|+++|..|+|||||+|+++.+...+..                 .......++   ......  +++  -.+.+|
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~-----------------~vg~~t~~~---~~~~~~--~~~--~~l~lw   92 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVS-----------------KVGVGTDIT---TRLRLS--YDG--ENLVLW   92 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceee-----------------ecccCCCch---hhHHhh--ccc--cceEEe
Confidence            35699999999999999999999964432221                 011111111   011111  222  468999


Q ss_pred             ecCCccc-------ccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725         91 DTAGQER-------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  130 (355)
Q Consensus        91 D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  130 (355)
                      |+||.++       +++....++.+.|.++++.++.++.---....|
T Consensus        93 DtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~  139 (296)
T COG3596          93 DTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFL  139 (296)
T ss_pred             cCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHH
Confidence            9999754       666677888899999999999997543333333

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.03  E-value=2.9e-09  Score=85.67  Aligned_cols=111  Identities=24%  Similarity=0.320  Sum_probs=90.1

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE  308 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~  308 (355)
                      ...+.++++||+++|+-+|..+.+++.+.|+++|.+.+..+ +..+.++.+....  -+|+++..||.||.  .....+.
T Consensus        67 ~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~--~a~ppe~  141 (187)
T COG2229          67 DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLF--DALPPEK  141 (187)
T ss_pred             cceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccC--CCCCHHH
Confidence            35788999999999999999999999999999999999988 4445555555432  29999999999995  4455556


Q ss_pred             HHHHHhhc--CcEEEEecCCCCCCHHHHHHHHHHH-cCC
Q psy15725        309 GERKAKEL--NVMFIETSAKAGYNVKQLFRRVAAA-LPG  344 (355)
Q Consensus       309 ~~~~~~~~--~~~~~~~SA~~~~gv~~l~~~l~~~-i~~  344 (355)
                      ..++....  ..++++++|.+++++.+.++.+..+ .+.
T Consensus       142 i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~~~~~  180 (187)
T COG2229         142 IREALKLELLSVPVIEIDATEGEGARDQLDVLLLKDLLG  180 (187)
T ss_pred             HHHHHHhccCCCceeeeecccchhHHHHHHHHHhhcccC
Confidence            55555444  6899999999999999999999887 443

>KOG4423|consensus

Probab=99.02  E-value=5.7e-10  Score=89.33  Aligned_cols=120  Identities=33%  Similarity=0.480  Sum_probs=99.1

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC----CCceEEEEeeCCCCCCcccCC
Q psy15725        230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSDKRQVS  305 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~~~v~  305 (355)
                      +.+.+||..|+++|..+.+.+|+.+++..+|||.++..+++...+|...+-+..+    .-.|+++..||||....-...
T Consensus        75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~  154 (229)
T KOG4423|consen   75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE  154 (229)
T ss_pred             HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhh
Confidence            4567899999999999999999999999999999999999999999999877654    236799999999974222222


Q ss_pred             -HHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHHcCCCCCCC
Q psy15725        306 -TEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPGMDSTE  349 (355)
Q Consensus       306 -~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~  349 (355)
                       ......+.++.|+ ..+++|||.+.|++|+-+.|++++.-...+.
T Consensus       155 ~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~  200 (229)
T KOG4423|consen  155 ATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQP  200 (229)
T ss_pred             hHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhccCC
Confidence             2445566777776 7999999999999999999999998665443

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.01  E-value=1.4e-09  Score=99.12  Aligned_cols=103  Identities=17%  Similarity=0.250  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      -+|+|+.+-..|||||+.+|+.+.-.=.....+      -.|.|.   ++......|++...+...+.++..+++++|||
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v------~ERvMD---SnDlEkERGITILaKnTav~~~~~~INIvDTP   76 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEV------AERVMD---SNDLEKERGITILAKNTAVNYNGTRINIVDTP   76 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccch------hhhhcC---ccchhhhcCcEEEeccceeecCCeEEEEecCC
Confidence            479999999999999999999965211111111      111111   12333456788888888889999999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      |+-+|....+..++-+|++++++|+.+....+
T Consensus        77 GHADFGGEVERvl~MVDgvlLlVDA~EGpMPQ  108 (603)
T COG1217          77 GHADFGGEVERVLSMVDGVLLLVDASEGPMPQ  108 (603)
T ss_pred             CcCCccchhhhhhhhcceEEEEEEcccCCCCc
Confidence            99999999999999999999999999865444

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.00  E-value=2.5e-09  Score=90.66  Aligned_cols=84  Identities=13%  Similarity=0.149  Sum_probs=51.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      .+|+++|.+|||||||+|++++.......                 .  .....|.  .........  ....+.++|||
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~-----------------~--~~~~~T~--~~~~~~~~~--~~~~i~viDTP   57 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESK-----------------L--SASSVTK--TCQKESAVW--DGRRVNVIDTP   57 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccc-----------------c--CCCCccc--ccceeeEEE--CCeEEEEEECc
Confidence            47999999999999999999985421110                 0  0000111  111111122  33579999999


Q ss_pred             Ccccccc--------c---ccccccCccEEEEEEECCC
Q psy15725         94 GQERFRS--------L---IPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        94 g~~~~~~--------~---~~~~~~~~d~ii~v~d~~~  120 (355)
                      |..+...        +   ......+.|++++|+++.+
T Consensus        58 G~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~   95 (196)
T cd01852          58 GLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR   95 (196)
T ss_pred             CCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC
Confidence            9754321        1   1122457899999999987

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.00  E-value=2.6e-09  Score=86.65  Aligned_cols=101  Identities=21%  Similarity=0.179  Sum_probs=75.4

Q ss_pred             eEEEEEEeCCCccccccc--------ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        229 QVRLQLWDTAGQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ...+.++|++|...+...        ....+..++++++|+|++++.+......+..      ..++|+++|+||+|+.+
T Consensus        48 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~  121 (157)
T cd04164          48 GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLP  121 (157)
T ss_pred             CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCC
Confidence            456789999996544321        2245678999999999998877665433322      25899999999999875


Q ss_pred             cccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        301 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       301 ~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ....       .....+.+++++||+++.|+++++++|.+.+
T Consensus       122 ~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         122 DSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             cccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            4433       2334456899999999999999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.98  E-value=4e-09  Score=93.62  Aligned_cols=85  Identities=15%  Similarity=0.281  Sum_probs=51.9

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCc-cccccceeeeeeeeeecCcEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT-YQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ...++|+++|.+||||||++|++++......                 +.+... ..++      ......  ....+.+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~v-----------------s~f~s~t~~~~------~~~~~~--~G~~l~V   90 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATV-----------------SAFQSEGLRPM------MVSRTR--AGFTLNI   90 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccc-----------------cCCCCcceeEE------EEEEEE--CCeEEEE
Confidence            4678999999999999999999998553211                 111111 1111      111122  3467999


Q ss_pred             EecCCccccccc-------ccccc--cCccEEEEEEECCC
Q psy15725         90 WDTAGQERFRSL-------IPSYI--RDSTVAVVVYDITN  120 (355)
Q Consensus        90 ~D~~g~~~~~~~-------~~~~~--~~~d~ii~v~d~~~  120 (355)
                      |||||..+....       ...++  ...|++++|..++.
T Consensus        91 IDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~  130 (313)
T TIGR00991        91 IDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDA  130 (313)
T ss_pred             EECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCc
Confidence            999997543211       11111  26899999966553

>KOG1532|consensus

Probab=98.97  E-value=8.6e-09  Score=87.96  Aligned_cols=88  Identities=20%  Similarity=0.224  Sum_probs=58.0

Q ss_pred             EEEEEEeC---CCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC--------HHHHH--------------
Q psy15725        256 VAVVVYDI---TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--------TEEGE--------------  310 (355)
Q Consensus       256 ~vi~v~d~---~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~--------~~~~~--------------  310 (355)
                      ++++++|.   +++.+|-+-.-+-..+...  ..+|.|+++||+|+.+.....        .+++.              
T Consensus       150 vv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~S  227 (366)
T KOG1532|consen  150 VVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRS  227 (366)
T ss_pred             EEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhh
Confidence            56777775   4455666555556666554  689999999999996542110        00000              


Q ss_pred             ---HHHhh-cCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        311 ---RKAKE-LNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       311 ---~~~~~-~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                         .+-.. .++..+.+||.+|.|.+++|.++...+...
T Consensus       228 mSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  228 MSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             HHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence               00111 336899999999999999999998877543

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.96  E-value=3.2e-09  Score=100.43  Aligned_cols=106  Identities=22%  Similarity=0.201  Sum_probs=79.6

Q ss_pred             ceEEEEEEeCCCccccccc--------ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  299 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~--------~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  299 (355)
                      +...+.+|||+|...+...        ...++..+|++++|+|.+++.+.+..  |+..+..   .++|+++|+||+|+.
T Consensus       249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~  323 (442)
T TIGR00450       249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLK  323 (442)
T ss_pred             CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCC
Confidence            3456689999997654432        23577899999999999988877664  6665543   478999999999985


Q ss_pred             CcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        300 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       300 ~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      ..      ....+.+..+.+++++||++ .||+++|+.|.+.+...
T Consensus       324 ~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       324 IN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             Cc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            33      11234455667899999998 69999999999988654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PTZ00258 GTP-binding protein; Provisional

Probab=98.95  E-value=7.5e-09  Score=95.41  Aligned_cols=27  Identities=19%  Similarity=0.305  Sum_probs=23.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ...++|++||.||||||||+|+|++..
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~   45 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQ   45 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCc
Confidence            345899999999999999999998754

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.95  E-value=4.1e-09  Score=103.25  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=83.3

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCC--H
Q psy15725        230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS--T  306 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~--~  306 (355)
                      ..+.+||+||++.|...+...+.++|++++|+|++++...+.. +.+..+..   .++| +++|+||+|+.+.+.+.  .
T Consensus        50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~-ehl~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~  125 (581)
T TIGR00475        50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTG-EHLAVLDL---LGIPHTIVVITKADRVNEEEIKRTE  125 (581)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEECCCCCCHHHHHHHH
Confidence            6789999999999988888889999999999999985432222 22222322   4788 99999999997544321  2


Q ss_pred             HHHHHHHhhc----CcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        307 EEGERKAKEL----NVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       307 ~~~~~~~~~~----~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      .+...+.+..    +++++++||++|.|+++++++|...+....
T Consensus       126 ~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       126 MFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             HHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence            2333444333    478999999999999999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG1144|consensus

Probab=98.94  E-value=1.2e-09  Score=104.33  Aligned_cols=102  Identities=25%  Similarity=0.268  Sum_probs=65.6

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee----cCcE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL----EDRT   84 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~   84 (355)
                      ..++..=++|+|+-.+|||-|+..+.+.+......+.+   |        +..-.++.|.-.+.-.+..+.-    ..+.
T Consensus       471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggi---t--------qqIgAt~fp~~ni~e~tk~~~~~~K~~~kv  539 (1064)
T KOG1144|consen  471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGI---T--------QQIGATYFPAENIREKTKELKKDAKKRLKV  539 (1064)
T ss_pred             hhcCCceEEEeecccccchHHHHHhhccccccccccce---e--------eeccccccchHHHHHHHHHHHhhhhhhcCC
Confidence            35666679999999999999999998866544433332   0        1111111111110000000000    1122


Q ss_pred             EEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      -.+.++||||++.|..++.....-||.+|+|+|+...
T Consensus       540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG  576 (1064)
T KOG1144|consen  540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG  576 (1064)
T ss_pred             CeeEEecCCCchhhhhhhhccccccceEEEEeehhcc
Confidence            3478999999999999999999999999999999874

>cd04142 RRP22 RRP22 subfamily

Probab=98.94  E-value=8.3e-10  Score=93.62  Aligned_cols=158  Identities=23%  Similarity=0.350  Sum_probs=122.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+|+|++|||||||+++|+++.+...+                       .||.+.++....+.+++..+.+.+||||
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~-----------------------~pt~~~~~~~~~i~~~~~~~~l~i~Dt~   57 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY-----------------------IPTEHRRLYRPAVVLSGRVYDLHILDVP   57 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCccc-----------------------CCccccccceeEEEECCEEEEEEEEeCC
Confidence            58999999999999999999996654444                       4454555555556677777899999999


Q ss_pred             Cccccccc--------ccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         94 GQERFRSL--------IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        94 g~~~~~~~--------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      |...+...        ....++.+|++++|||++++++|+.+..|++.+.....                          
T Consensus        58 G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~--------------------------  111 (198)
T cd04142          58 NMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRP--------------------------  111 (198)
T ss_pred             CcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--------------------------
Confidence            97655322        33457899999999999999999999999988865421                          


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh-ccCeEEEEeeeeeccccceEEE
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-ELNVMFIETSAKAGYNVKQVRL  232 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~-~~~~~~~~~sa~~~~~v~~i~~  232 (355)
                                  ....++|+++|+||+|+...+.+..++...++. ..+++++++|+.++.+++.++.
T Consensus       112 ------------~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~  167 (198)
T cd04142         112 ------------AGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFK  167 (198)
T ss_pred             ------------cCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHH
Confidence                        113479999999999997766666665655544 5578999999999999887653

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.94  E-value=6.9e-09  Score=90.71  Aligned_cols=86  Identities=21%  Similarity=0.278  Sum_probs=51.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...++|+++|.+|||||||+|++++......                 +.+..   .|.....  ....  .....+.+|
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-----------------~~~~~---~T~~~~~--~~~~--~~g~~i~vI   84 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAAT-----------------SAFQS---ETLRVRE--VSGT--VDGFKLNII   84 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCccc-----------------CCCCC---ceEEEEE--EEEE--ECCeEEEEE
Confidence            4568999999999999999999999543221                 11111   1111111  1112  233578999


Q ss_pred             ecCCcccccc---c-------cccccc--CccEEEEEEECCC
Q psy15725         91 DTAGQERFRS---L-------IPSYIR--DSTVAVVVYDITN  120 (355)
Q Consensus        91 D~~g~~~~~~---~-------~~~~~~--~~d~ii~v~d~~~  120 (355)
                      ||||..+...   .       ...++.  ..|++++|..++.
T Consensus        85 DTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~  126 (249)
T cd01853          85 DTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDM  126 (249)
T ss_pred             ECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCC
Confidence            9999764421   0       112222  5788888876654

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.3e-08  Score=88.81  Aligned_cols=121  Identities=22%  Similarity=0.242  Sum_probs=84.5

Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC--CHHH
Q psy15725        231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEE  308 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~  308 (355)
                      ...+.|.+|++.....+-+-.+-.|+.++|++...+..--...+.+-.+.-.  .-+-+|++-||+|+.+.++.  ..++
T Consensus        87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHH
Confidence            4578999999988776666666778889999876543211122333333332  23559999999999765432  2344


Q ss_pred             HHHHHhh---cCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCCCC
Q psy15725        309 GERKAKE---LNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPP  353 (355)
Q Consensus       309 ~~~~~~~---~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~~~  353 (355)
                      ..+|.+.   .+.|++++||..+.|||.++++|.+.||.+...-.+++
T Consensus       165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p  212 (415)
T COG5257         165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPP  212 (415)
T ss_pred             HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCc
Confidence            4555543   34699999999999999999999999998876665553

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.7e-08  Score=86.94  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=69.7

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCcc-ccccceeeeeeeeeecCcE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYLEDRT   84 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~   84 (355)
                      .+...-+.+||..+|+-+.|||||..+++.--....          ......++..++.+ ....|++....-+.++...
T Consensus         5 kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~----------~~~~~~y~~id~aPeEk~rGITIntahveyet~~   74 (394)
T COG0050           5 KFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG----------GAEAKAYDQIDNAPEEKARGITINTAHVEYETAN   74 (394)
T ss_pred             hhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhc----------cccccchhhhccCchHhhcCceeccceeEEecCC
Confidence            345567889999999999999999988876211000          00000111122111 1133445555555555556


Q ss_pred             EEEEEEecCCcccccccccccccCccEEEEEEECCCcc
Q psy15725         85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN  122 (355)
Q Consensus        85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~  122 (355)
                      -++..+|+||+-+|-..+.....+.|+.|+|+.+.+..
T Consensus        75 rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGp  112 (394)
T COG0050          75 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP  112 (394)
T ss_pred             ceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCC
Confidence            67889999999988887777777889999998888743

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.88  E-value=1e-08  Score=97.44  Aligned_cols=113  Identities=19%  Similarity=0.168  Sum_probs=75.5

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCccc--
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--  303 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--  303 (355)
                      .+...+.+||++|++.|.......+..+|++++|+|+++..+..... .+...+.... ...|+++++||+|+.+...  
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHHH
Confidence            34678899999999988766666678999999999999874321111 1111222222 2357999999999963211  


Q ss_pred             --CCHHHHHHHHhhcC-----cEEEEecCCCCCCHHH------------HHHHHHH
Q psy15725        304 --VSTEEGERKAKELN-----VMFIETSAKAGYNVKQ------------LFRRVAA  340 (355)
Q Consensus       304 --v~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~------------l~~~l~~  340 (355)
                        ....+...+++..+     ++++++||++|.||++            |+++|..
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~  216 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA  216 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc
Confidence              11223334444443     6899999999999986            7777754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.87  E-value=1.3e-08  Score=83.99  Aligned_cols=51  Identities=18%  Similarity=0.211  Sum_probs=37.2

Q ss_pred             EEEEEEecCCccc----ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         85 VRLQLWDTAGQER----FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        85 ~~~~i~D~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ..+.++||||...    ...++..++..+|++++|.++....+-.....+.+...
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~  155 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD  155 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence            3578999999743    33567778899999999999999655555555555543

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0464|consensus

Probab=98.85  E-value=3.3e-09  Score=95.20  Aligned_cols=116  Identities=20%  Similarity=0.286  Sum_probs=83.6

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+--+|.|+.+-.+||||...|++.-.-.-...+.+ +...-+..|+      ......|+++....+.++++..++++
T Consensus        34 ~akirnigiiahidagktttterily~ag~~~s~g~v-ddgdtvtdfl------a~erergitiqsaav~fdwkg~rinl  106 (753)
T KOG0464|consen   34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDV-DDGDTVTDFL------AIERERGITIQSAAVNFDWKGHRINL  106 (753)
T ss_pred             hhhhhcceeEEEecCCCchhHHHHHHHhhhhhccccc-CCCchHHHHH------HHHHhcCceeeeeeeecccccceEee
Confidence            3455789999999999999999998722111111111 0111111111      11234577788888899999999999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHH
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID  132 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~  132 (355)
                      +||||+-+|+-..+.+++.-|+++.|||.+-.-.-+.+.-|..
T Consensus       107 idtpghvdf~leverclrvldgavav~dasagve~qtltvwrq  149 (753)
T KOG0464|consen  107 IDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ  149 (753)
T ss_pred             ecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh
Confidence            9999999999999999999999999999998766666777743

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.85  E-value=4e-08  Score=89.56  Aligned_cols=162  Identities=15%  Similarity=0.135  Sum_probs=87.6

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceee---eeeeee-ecCcEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF---LSKTMY-LEDRTVR   86 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~   86 (355)
                      .-++.|.|+|+.++|||||+|+|.+.-..+.....-  .......=+.++....+.-|...-|   ....+. .++-...
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~--~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~   92 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEY--DKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK   92 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchh--HHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence            346899999999999999999999973222211000  0000000011223332222222222   222222 2344578


Q ss_pred             EEEEecCCccc--------ccc-----------c----------cccccc-CccEEEEEE-ECC----Ccc-hhhhHHHH
Q psy15725         87 LQLWDTAGQER--------FRS-----------L----------IPSYIR-DSTVAVVVY-DIT----NAN-SFHQTSKW  130 (355)
Q Consensus        87 ~~i~D~~g~~~--------~~~-----------~----------~~~~~~-~~d~ii~v~-d~~----~~~-s~~~~~~~  130 (355)
                      +.++||+|...        ...           .          +...+. .+|..++|. |.+    .++ ..+.-..|
T Consensus        93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~  172 (492)
T TIGR02836        93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV  172 (492)
T ss_pred             EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence            89999999531        111           0          122233 789999998 774    122 33445667


Q ss_pred             HHHHhhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh
Q psy15725        131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK  210 (355)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~  210 (355)
                      +++++..                                            ++|+++|.||.|...+.  +......+..
T Consensus       173 i~eLk~~--------------------------------------------~kPfiivlN~~dp~~~e--t~~l~~~l~e  206 (492)
T TIGR02836       173 IEELKEL--------------------------------------------NKPFIILLNSTHPYHPE--TEALRQELEE  206 (492)
T ss_pred             HHHHHhc--------------------------------------------CCCEEEEEECcCCCCch--hHHHHHHHHH
Confidence            7777654                                            89999999999953222  2222234445


Q ss_pred             ccCeEEEEee
Q psy15725        211 ELNVMFIETS  220 (355)
Q Consensus       211 ~~~~~~~~~s  220 (355)
                      ++++++..++
T Consensus       207 ky~vpvl~v~  216 (492)
T TIGR02836       207 KYDVPVLAMD  216 (492)
T ss_pred             HhCCceEEEE
Confidence            5566544443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG1145|consensus

Probab=98.84  E-value=1.8e-08  Score=93.62  Aligned_cols=155  Identities=15%  Similarity=0.186  Sum_probs=105.2

Q ss_pred             CCccEEEEEeecCCCCcccceehhhhhhhhh------ccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK------ELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       180 ~~~~piilv~nK~D~~~~~~v~~~~~~~~~~------~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                      .+..|++-++-..|.-.-.-++..+.-+.+.      ..++.-+.++...|     -+.+|.||||+..|..++..-...
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-----~~iTFLDTPGHaAF~aMRaRGA~v  224 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-----KSITFLDTPGHAAFSAMRARGANV  224 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-----CEEEEecCCcHHHHHHHHhccCcc
Confidence            4578999999999974322222211111111      12344555655533     467899999999999999999999


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc--ccCCHHHHHH--HHhhcC--cEEEEecCCC
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK--RQVSTEEGER--KAKELN--VMFIETSAKA  327 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~--~~~~~~--~~~~~~SA~~  327 (355)
                      +|.+++|+..+|...-+.    .+.|......+.|+|+..||+|....  +++..+....  ..+.+|  ..++++||++
T Consensus       225 tDIvVLVVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~  300 (683)
T KOG1145|consen  225 TDIVVLVVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT  300 (683)
T ss_pred             ccEEEEEEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence            999999999998865443    34444444479999999999997532  2222211111  122344  6899999999


Q ss_pred             CCCHHHHHHHHHHHcC
Q psy15725        328 GYNVKQLFRRVAAALP  343 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~  343 (355)
                      |.|++.|.++++-...
T Consensus       301 g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  301 GENLDLLEEAILLLAE  316 (683)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            9999999998876543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.84  E-value=4.1e-10  Score=97.75  Aligned_cols=112  Identities=22%  Similarity=0.196  Sum_probs=61.1

Q ss_pred             EEEEEeCCCcccccccccccc--------cCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        231 RLQLWDTAGQERFRSLIPSYI--------RDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ...++|||||.++-..|....        ...-++++++|+....+... +..++-.+......+.|.|.|.||+|+.++
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            567999999888776655443        55668888888765443222 233343333333358999999999999752


Q ss_pred             c------------cC-------CHHHHHHHHh---hcC-c-EEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        302 R------------QV-------STEEGERKAK---ELN-V-MFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       302 ~------------~v-------~~~~~~~~~~---~~~-~-~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      .            ..       ......+++.   ..+ . .+++.|+++++|+++++..|-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            1            00       0011111221   122 4 799999999999999999987754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1486|consensus

Probab=98.83  E-value=5e-07  Score=76.33  Aligned_cols=87  Identities=18%  Similarity=0.270  Sum_probs=59.1

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeee---eeecCcEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT---MYLEDRTVRL   87 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~   87 (355)
                      +-..+|+++|-|.||||||+..++..+                            ....++.|.+..   ..+.++...+
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~----------------------------SeaA~yeFTTLtcIpGvi~y~ga~I  111 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTH----------------------------SEAASYEFTTLTCIPGVIHYNGANI  111 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcch----------------------------hhhhceeeeEEEeecceEEecCceE
Confidence            446799999999999999999988733                            111122222222   2233445679


Q ss_pred             EEEecCCccc-------ccccccccccCccEEEEEEECCCcchhh
Q psy15725         88 QLWDTAGQER-------FRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        88 ~i~D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      ++.|+||.-+       -........+.+|.++.|.|++..+.-.
T Consensus       112 QllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr  156 (364)
T KOG1486|consen  112 QLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQR  156 (364)
T ss_pred             EEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHH
Confidence            9999999622       1224445678999999999999865554

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.83  E-value=4.4e-09  Score=84.58  Aligned_cols=103  Identities=21%  Similarity=0.333  Sum_probs=68.9

Q ss_pred             eEEEEEEeCCCcccccc------cccccc--cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        229 QVRLQLWDTAGQERFRS------LIPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~------~~~~~~--~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      .....++|+||-.....      ....++  ...|+++.|+|.++.   +.-......+.+   .++|+++++||+|...
T Consensus        46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e---~g~P~vvvlN~~D~a~  119 (156)
T PF02421_consen   46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLE---LGIPVVVVLNKMDEAE  119 (156)
T ss_dssp             TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHH---TTSSEEEEEETHHHHH
T ss_pred             CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHH---cCCCEEEEEeCHHHHH
Confidence            35678999999443332      223333  689999999998863   222234444555   5899999999999864


Q ss_pred             cccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHH
Q psy15725        301 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  338 (355)
Q Consensus       301 ~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l  338 (355)
                      .+.+.. ....+.+..++|++++||++++|+++++++|
T Consensus       120 ~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  120 RKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             HTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             HcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            443322 3456667789999999999999999999876

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.81  E-value=2.6e-08  Score=94.59  Aligned_cols=104  Identities=19%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCC-ceEEEEeeCCCCCCccc---
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDKRQ---  303 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piilv~nK~Dl~~~~~---  303 (355)
                      +...+.+|||+|++.|.......+..+|++++|+|+++.........+.-.+...  .+ .|+++++||+|+.+...   
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEccccccccHHHH
Confidence            4678899999999887665555578899999999998732222222222222222  24 46999999999864211   


Q ss_pred             -CCHHHHHHHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725        304 -VSTEEGERKAKELN-----VMFIETSAKAGYNVKQ  333 (355)
Q Consensus       304 -v~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~  333 (355)
                       ...++...+.+..+     ++++++||++|.|+++
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence             11122333333333     5899999999999987

>KOG1490|consensus

Probab=98.81  E-value=8.3e-09  Score=94.92  Aligned_cols=150  Identities=20%  Similarity=0.196  Sum_probs=97.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeee---eeecCcEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT---MYLEDRTVRL   87 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~   87 (355)
                      +.+-.++++|.||||||||+|.++.....-.                            .+.|.++.   .+++++..+|
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevq----------------------------pYaFTTksL~vGH~dykYlrw  217 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ----------------------------PYAFTTKLLLVGHLDYKYLRW  217 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccC----------------------------Ccccccchhhhhhhhhheeee
Confidence            3456899999999999999998877442211                            12222222   2456778899


Q ss_pred             EEEecCCcccccc----cccc-----cccCccEEEEEEECCC--cchhhhHHHHHHHHhhhcCCceEEeecccccccccc
Q psy15725         88 QLWDTAGQERFRS----LIPS-----YIRDSTVAVVVYDITN--ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH  156 (355)
Q Consensus        88 ~i~D~~g~~~~~~----~~~~-----~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
                      +++||||.-+...    ..+.     ...--.+|+|+.|++.  ..|.+..-.++..|+-+                   
T Consensus       218 QViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-------------------  278 (620)
T KOG1490|consen  218 QVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-------------------  278 (620)
T ss_pred             eecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-------------------
Confidence            9999999632211    1110     0111246899999998  56777766677777633                   


Q ss_pred             ccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhh---hhhhccCeEEEEeeeeeccccceE
Q psy15725        157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE---RKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~---~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                                             ..+.|+|+|+||+|......++++...   ......++++++.|-.+..++-.+
T Consensus       279 -----------------------FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~V  332 (620)
T KOG1490|consen  279 -----------------------FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDV  332 (620)
T ss_pred             -----------------------hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeH
Confidence                                   348999999999998766555544322   333344578888887776665543

>cd01859 MJ1464 MJ1464

Probab=98.80  E-value=8.4e-09  Score=84.04  Aligned_cols=95  Identities=22%  Similarity=0.198  Sum_probs=65.4

Q ss_pred             cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEe
Q psy15725        244 RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET  323 (355)
Q Consensus       244 ~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  323 (355)
                      +.++.+...++|++++|+|++++..... ..+...+..   .++|+++|+||+|+.+....  .....+....+.+++++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i   76 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV   76 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence            3455666778999999999987654322 122222222   47899999999998533221  11112333455789999


Q ss_pred             cCCCCCCHHHHHHHHHHHcCC
Q psy15725        324 SAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       324 SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      ||+++.|++++++.|.+.++.
T Consensus        77 Sa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          77 SAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EccccccHHHHHHHHHHHHhh
Confidence            999999999999999998874

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01882 BMS1 Bms1

Probab=98.79  E-value=4.8e-08  Score=84.46  Aligned_cols=83  Identities=14%  Similarity=0.228  Sum_probs=52.4

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+...|+++|++|+|||||++.+....- ..   +                   .....|. +   .+ ...+..++.+
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~-~~---~-------------------~~~~~g~-i---~i-~~~~~~~i~~   87 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYT-KQ---N-------------------ISDIKGP-I---TV-VTGKKRRLTF   87 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcc-cC---c-------------------ccccccc-E---EE-EecCCceEEE
Confidence            34567899999999999999999987311 00   0                   0000110 0   01 1123457899


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcch
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS  123 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  123 (355)
                      +||||.-   .......+.+|++++|+|++....
T Consensus        88 vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~  118 (225)
T cd01882          88 IECPNDI---NAMIDIAKVADLVLLLIDASFGFE  118 (225)
T ss_pred             EeCCchH---HHHHHHHHhcCEEEEEEecCcCCC
Confidence            9999853   222234678999999999987543

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.77  E-value=7e-10  Score=104.02  Aligned_cols=115  Identities=19%  Similarity=0.250  Sum_probs=83.4

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCc----------ccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA----------NSFHQTSKWIDDVRTER-GSDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piilv~nK~  296 (355)
                      ....+.++|.+|+...+..|..++.++++++||+++++.          ..+++....++.+.... ..+.|++|++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            567789999999999999999999999999999998532          23445455666665543 3789999999999


Q ss_pred             CCCC------c-------c-----cCCHHHHHHHHhh------------cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        297 DLSD------K-------R-----QVSTEEGERKAKE------------LNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       297 Dl~~------~-------~-----~v~~~~~~~~~~~------------~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      |+..      +       +     .-....+..+...            ..+.++.++|....++..+|+.+.+.|
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            9721      1       0     0223344444321            234788999999999999999998764

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.77  E-value=7.5e-08  Score=81.27  Aligned_cols=113  Identities=16%  Similarity=0.163  Sum_probs=76.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~  306 (355)
                      +...+.++||||...|.......+..+|++++|+|++....-+. .+....+..   .++| +|++.||+|+........
T Consensus        63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~  138 (195)
T cd01884          63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ---VGVPYIVVFLNKADMVDDEELLE  138 (195)
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHH
Confidence            34567899999988887766677789999999999987654222 233333443   4677 889999999863322111


Q ss_pred             ---HHHHHHHhhc-----CcEEEEecCCCCCC----------HHHHHHHHHHHcCC
Q psy15725        307 ---EEGERKAKEL-----NVMFIETSAKAGYN----------VKQLFRRVAAALPG  344 (355)
Q Consensus       307 ---~~~~~~~~~~-----~~~~~~~SA~~~~g----------v~~l~~~l~~~i~~  344 (355)
                         .+...+....     +++++++||++|.|          +..|+++|.+.++.
T Consensus       139 ~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~  194 (195)
T cd01884         139 LVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYIPT  194 (195)
T ss_pred             HHHHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCC
Confidence               1233333333     36899999999997          45788888766553

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04163 Era Era subfamily

Probab=98.76  E-value=4.9e-08  Score=79.78  Aligned_cols=110  Identities=20%  Similarity=0.186  Sum_probs=73.8

Q ss_pred             eEEEEEEeCCCcccccc--------cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        229 QVRLQLWDTAGQERFRS--------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ...+.++|++|......        .....+..++++++|+|++++.+. ....+...+..   .+.|+++++||+|+..
T Consensus        50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~  125 (168)
T cd04163          50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVK  125 (168)
T ss_pred             CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccc
Confidence            45678999999543322        233457889999999999987321 12223333433   3689999999999873


Q ss_pred             cccCCHHHHHHHHhhc-CcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        301 KRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       301 ~~~v~~~~~~~~~~~~-~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ...........+.... ..+++++||+++.|+++++++|.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         126 DKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKYL  168 (168)
T ss_pred             cHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence            2222222233333333 36899999999999999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01855 YqeH YqeH

Probab=98.76  E-value=3e-08  Score=83.63  Aligned_cols=94  Identities=26%  Similarity=0.252  Sum_probs=66.1

Q ss_pred             ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHH-----hhcC
Q psy15725        243 FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELN  317 (355)
Q Consensus       243 ~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~  317 (355)
                      ++..+..++..++++++|+|+++....     |...+.... .++|+++|+||+|+..... .......+.     +..+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            566778889999999999999876421     222222222 5789999999999864332 222222222     2223


Q ss_pred             ---cEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        318 ---VMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       318 ---~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                         .+++++||++|.|+++++++|.+.++
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence               26999999999999999999999876

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>smart00053 DYNc Dynamin, GTPase

Probab=98.76  E-value=7.7e-08  Score=83.25  Aligned_cols=27  Identities=30%  Similarity=0.507  Sum_probs=23.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSF   38 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~   38 (355)
                      .-..|+|+|+.|+||||+++++.+..+
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~   51 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDF   51 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCc
Confidence            334799999999999999999998753

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1707|consensus

Probab=98.76  E-value=7.3e-08  Score=90.46  Aligned_cols=135  Identities=19%  Similarity=0.275  Sum_probs=90.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +-+...|+|+.++|||.|+++|++..+...                       ...+....+....+...+..-++.+-|
T Consensus       424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~-----------------------~~~~~~~~~avn~v~~~g~~k~LiL~e  480 (625)
T KOG1707|consen  424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDN-----------------------NTGTTKPRYAVNSVEVKGQQKYLILRE  480 (625)
T ss_pred             eeeeEEEEcCCcCchHHHHHHHhccccccc-----------------------cccCCCCceeeeeeeeccccceEEEee
Confidence            458899999999999999999999554332                       222223333333333335555677777


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      .+-. ....+.... ..||+++++||.+++.+|+.....++....                                   
T Consensus       481 i~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~-----------------------------------  523 (625)
T KOG1707|consen  481 IGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFD-----------------------------------  523 (625)
T ss_pred             cCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhh-----------------------------------
Confidence            7754 222222222 679999999999999999887665544321                                   


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV  214 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~  214 (355)
                              ...+|+++|++|+|+....+...-+...++.+++.
T Consensus       524 --------~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i  558 (625)
T KOG1707|consen  524 --------LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGL  558 (625)
T ss_pred             --------ccCCceEEEeeccccchhhhccCCChHHHHHhcCC
Confidence                    15899999999999976543333334666766665

>PRK12289 GTPase RsgA; Reviewed

Probab=98.76  E-value=3.6e-08  Score=90.25  Aligned_cols=92  Identities=14%  Similarity=0.244  Sum_probs=68.5

Q ss_pred             cccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEec
Q psy15725        246 LIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS  324 (355)
Q Consensus       246 ~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  324 (355)
                      +.+..+.++|.+++|+|+.++. ....+..|+..+..   .++|+++|+||+||.++...  .......+..+++++++|
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iS  156 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFIS  156 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            3445588999999999998765 44456777766643   68999999999999644322  112233346678999999


Q ss_pred             CCCCCCHHHHHHHHHHHc
Q psy15725        325 AKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       325 A~~~~gv~~l~~~l~~~i  342 (355)
                      |+++.|++++++.|...+
T Consensus       157 A~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        157 VETGIGLEALLEQLRNKI  174 (352)
T ss_pred             cCCCCCHHHHhhhhccce
Confidence            999999999999987644

>KOG3886|consensus

Probab=98.75  E-value=9.7e-09  Score=85.45  Aligned_cols=100  Identities=23%  Similarity=0.351  Sum_probs=65.8

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      .-||+++|..|+|||++-.-++.+.                     ..++. ...+|+.+......+   -+++.+++||
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny---------------------~a~D~~rlg~tidveHsh~Rf---lGnl~LnlwD   59 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANY---------------------IARDTRRLGATIDVEHSHVRF---LGNLVLNLWD   59 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhh---------------------hhhhhhccCCcceeeehhhhh---hhhheeehhc
Confidence            4589999999999999876655422                     11111 223344333333322   2347899999


Q ss_pred             cCCcccc-----cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         92 TAGQERF-----RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        92 ~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      ++|++.|     .......++..+++++|||++..+--.++..+.+-++.
T Consensus        60 cGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~  109 (295)
T KOG3886|consen   60 CGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEA  109 (295)
T ss_pred             cCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHH
Confidence            9999743     33556678999999999999987665666655554443

>KOG0071|consensus

Probab=98.75  E-value=3.8e-08  Score=75.27  Aligned_cols=114  Identities=23%  Similarity=0.422  Sum_probs=91.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      .++.+.+||.+|+...+.+|++||.+..++|||+|+.+...+++....+..+..... .+.|+++.+||+|+....  +.
T Consensus        59 kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~p  136 (180)
T KOG0071|consen   59 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KP  136 (180)
T ss_pred             eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CH
Confidence            356788999999999999999999999999999999988888777666555544332 689999999999996432  23


Q ss_pred             HHHHH-----HHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        307 EEGER-----KAKELNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       307 ~~~~~-----~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ++...     -++...|.++++||.+|.|+.|.|-||.....
T Consensus       137 qei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  137 QEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence            33332     24455689999999999999999999987654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.75  E-value=1.7e-07  Score=84.77  Aligned_cols=103  Identities=16%  Similarity=0.092  Sum_probs=59.0

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH---
Q psy15725        230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST---  306 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~---  306 (355)
                      +.+.|+||+|.-...   ......+|.++++....   +-+++......+     .++|.++++||+|+........   
T Consensus       127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence            345566776632111   12345567777664322   323333333333     3578899999999864332110   


Q ss_pred             HH--H-HHHHhh-cC--cEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        307 EE--G-ERKAKE-LN--VMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       307 ~~--~-~~~~~~-~~--~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ..  . ..+... .+  .+++++||+++.|+++++++|.+...
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            00  0 111111 12  36999999999999999999998744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.73  E-value=1.3e-08  Score=88.98  Aligned_cols=93  Identities=19%  Similarity=0.223  Sum_probs=73.6

Q ss_pred             ccccccccccccCccEEEEEEECCCcc-hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         96 ERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      +++..+.+.+++++|++++|||+.++. +|..+..|+..+..                                      
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--------------------------------------   65 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--------------------------------------   65 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------------------------------------
Confidence            677888888999999999999999877 89999999876643                                      


Q ss_pred             ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEE
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQ  233 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~  233 (355)
                            .++|+++|+||+|+.+.+.+..+....+. ..+.+++.+|+.++.++++++..
T Consensus        66 ------~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v~~~SAktg~gi~eLf~~  117 (245)
T TIGR00157        66 ------QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQVLMTSSKNQDGLKELIEA  117 (245)
T ss_pred             ------CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeEEEEecCCchhHHHHHhh
Confidence                  37999999999999765544433344443 46788999999999888775543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0458|consensus

Probab=98.72  E-value=9.2e-08  Score=89.81  Aligned_cols=110  Identities=25%  Similarity=0.433  Sum_probs=76.9

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCC--------ceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT--------YQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL   80 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~   80 (355)
                      .+.+.++++|+|+-++|||||+.+++..--...        ......|+.+|+.....+..-.+....+..+.  ....+
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v--~~~~f  250 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDV--KTTWF  250 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEe--eeEEE
Confidence            344789999999999999999999987532111        00112455555444444444444444444444  44444


Q ss_pred             cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCC
Q psy15725         81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      +.+...+.++|.||+..|...+......+|++++|+|++.
T Consensus       251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~  290 (603)
T KOG0458|consen  251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST  290 (603)
T ss_pred             ecCceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence            5566789999999999999999899999999999999987

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.72  E-value=4.4e-07  Score=74.30  Aligned_cols=78  Identities=29%  Similarity=0.282  Sum_probs=50.9

Q ss_pred             EEEEEEeCCCcccHHHHHHHHHHHHh-hcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh--hcCcEEEEecCCCCCCHH
Q psy15725        256 VAVVVYDITNANSFHQTSKWIDDVRT-ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK--ELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       256 ~vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~~SA~~~~gv~  332 (355)
                      .-|+|+|.+..+-.-         .. +..--..-++|.||.|+...-....+....-++  +-..|++++|+++|+|++
T Consensus       120 ~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~  190 (202)
T COG0378         120 LRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD  190 (202)
T ss_pred             eEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence            667888887654311         01 111123578999999996433332233333333  344799999999999999


Q ss_pred             HHHHHHHHHc
Q psy15725        333 QLFRRVAAAL  342 (355)
Q Consensus       333 ~l~~~l~~~i  342 (355)
                      ++++|+....
T Consensus       191 ~~~~~i~~~~  200 (202)
T COG0378         191 EWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHhhc
Confidence            9999998764

>KOG0468|consensus

Probab=98.71  E-value=6.4e-08  Score=91.77  Aligned_cols=115  Identities=20%  Similarity=0.240  Sum_probs=78.9

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee---cCcEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTV   85 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~   85 (355)
                      ++..-.+++++|+-+.|||+|+.-|..+..+....++-     .--+|....+. +....+++.....++.+   .++..
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e-----~~lrytD~l~~-E~eRg~sIK~~p~Tl~l~D~~~KS~  197 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTE-----ADLRYTDTLFY-EQERGCSIKSTPVTLVLSDSKGKSY  197 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceecccccccccc-----ccccccccchh-hHhcCceEeecceEEEEecCcCcee
Confidence            34556899999999999999999998877654433221     11122221111 22223333333444333   45677


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHH
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK  129 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~  129 (355)
                      -++++||||+-.|-..+...++.+|++++|+|+.+.-.++.-+-
T Consensus       198 l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~  241 (971)
T KOG0468|consen  198 LMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI  241 (971)
T ss_pred             eeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH
Confidence            89999999999999999999999999999999999877765433

>KOG0394|consensus

Probab=98.70  E-value=6e-08  Score=77.90  Aligned_cols=73  Identities=33%  Similarity=0.641  Sum_probs=59.4

Q ss_pred             hccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC
Q psy15725        210 KELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG  284 (355)
Q Consensus       210 ~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~  284 (355)
                      ..++..|..-...  .+..-+.++||||+|+++|.++...+|+++|..++|||+.++.+++.+..|.+++..++.
T Consensus        40 aTIgadFltKev~--Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~  112 (210)
T KOG0394|consen   40 ATIGADFLTKEVQ--VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQAS  112 (210)
T ss_pred             cccchhheeeEEE--EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcC
Confidence            3444444433322  234566789999999999999999999999999999999999999999999999888753

>PRK12288 GTPase RsgA; Reviewed

Probab=98.67  E-value=1.2e-07  Score=86.85  Aligned_cols=90  Identities=16%  Similarity=0.172  Sum_probs=69.4

Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC-CHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-STEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                      ..+++|.+++|++.+...++..+..|+..+..   .++|+++|+||+|+.+.... .........+..+++++++||+++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            35789999999999888899889999876544   57999999999999644221 111222333456789999999999


Q ss_pred             CCHHHHHHHHHHHc
Q psy15725        329 YNVKQLFRRVAAAL  342 (355)
Q Consensus       329 ~gv~~l~~~l~~~i  342 (355)
                      .|+++++++|...+
T Consensus       194 ~GideL~~~L~~ki  207 (347)
T PRK12288        194 EGLEELEAALTGRI  207 (347)
T ss_pred             cCHHHHHHHHhhCC
Confidence            99999999997654

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.67  E-value=5e-08  Score=89.01  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .+++|+|+|.+|+|||||+|+|.+-
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl   58 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGL   58 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT-
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999999773

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.66  E-value=7.1e-07  Score=78.87  Aligned_cols=56  Identities=21%  Similarity=0.204  Sum_probs=39.7

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHHhh--cCcEEEEecCCCCCCHHHHHHHHHHH
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKE--LNVMFIETSAKAGYNVKQLFRRVAAA  341 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~SA~~~~gv~~l~~~l~~~  341 (355)
                      ..+.++|.||+|+........+...+..+.  .+.+++++||++|+|++++++||...
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            467899999999964211112222333333  34689999999999999999999874

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.65  E-value=1.2e-07  Score=85.06  Aligned_cols=87  Identities=17%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             ccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        249 SYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                      ..+.++|.+++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.++..  ...........+.+++++||++
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~  148 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT  148 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence            3478899999999999887 77788888877765   5799999999999964421  1122223344678999999999


Q ss_pred             CCCHHHHHHHHHH
Q psy15725        328 GYNVKQLFRRVAA  340 (355)
Q Consensus       328 ~~gv~~l~~~l~~  340 (355)
                      +.|+++++..|..
T Consensus       149 g~gi~~L~~~L~~  161 (287)
T cd01854         149 GEGLDELREYLKG  161 (287)
T ss_pred             CccHHHHHhhhcc
Confidence            9999999998865

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.65  E-value=1.1e-07  Score=84.05  Aligned_cols=168  Identities=21%  Similarity=0.268  Sum_probs=105.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCC--CCCceeeeecccceeee-----------cccCCCCCccccccceeeeeeeee
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIVGKTSLITR-----------FMYDSFDNTYQATIGIDFLSKTMY   79 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~t~~~~~~~~~~~   79 (355)
                      .++++-+|.-.=|||||+-||+...-  .+....++   ..-+.+           .+.+.+..+....+.+++..+.+.
T Consensus         6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l---~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASL---ERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHH---hcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            47899999999999999999998642  11111111   000000           011122223334566666666654


Q ss_pred             ecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         80 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        80 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      -+.  -.|.+-||||++.|...+......||.+|+++|+...  .....+-+..|..+.                     
T Consensus        83 T~K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLL---------------------  137 (431)
T COG2895          83 TEK--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLL---------------------  137 (431)
T ss_pred             ccc--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHh---------------------
Confidence            433  4799999999999999999999999999999999552  322222233332221                     


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccceeh----hhhhhhhhccC---eEEEEeeeeeccccce
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST----EEGERKAKELN---VMFIETSAKAGYNVKQ  229 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~----~~~~~~~~~~~---~~~~~~sa~~~~~v~~  229 (355)
                                           .=..+++.+||.|+.+-.+-..    .+...++..++   ..++++|+..|.|+-.
T Consensus       138 ---------------------GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         138 ---------------------GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             ---------------------CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence                                 1235788899999965322111    22334555555   4788999999988754

>PRK00098 GTPase RsgA; Reviewed

Probab=98.65  E-value=1.2e-07  Score=85.41  Aligned_cols=88  Identities=19%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             cccCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                      .+.++|.+++|+|++++..... +..|+..+..   .++|+++|+||+|+.+.... ........+..+++++++||+++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCC
Confidence            3689999999999988765444 4677776654   58999999999999632211 12223344556789999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy15725        329 YNVKQLFRRVAAA  341 (355)
Q Consensus       329 ~gv~~l~~~l~~~  341 (355)
                      .|++++++.|...
T Consensus       153 ~gi~~L~~~l~gk  165 (298)
T PRK00098        153 EGLDELKPLLAGK  165 (298)
T ss_pred             ccHHHHHhhccCc
Confidence            9999999987543

>cd04167 Snu114p Snu114p subfamily

Probab=98.64  E-value=1.2e-07  Score=81.52  Aligned_cols=114  Identities=19%  Similarity=0.222  Sum_probs=79.7

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc-CCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ-VST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~  306 (355)
                      ..+.+.++|++|+..|......++..+|++++|+|.++..+... ..++..+..   .++|+++++||+|+...+. ...
T Consensus        69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~  144 (213)
T cd04167          69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPP  144 (213)
T ss_pred             CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCH
Confidence            45788999999999988888888899999999999987766543 233343333   4699999999999752111 111


Q ss_pred             HH-----------HHHHHhhcC-------cE----EEEecCCCCCCHH--------HHHHHHHHHcCCC
Q psy15725        307 EE-----------GERKAKELN-------VM----FIETSAKAGYNVK--------QLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~-----------~~~~~~~~~-------~~----~~~~SA~~~~gv~--------~l~~~l~~~i~~~  345 (355)
                      .+           ....+...+       +|    ++++||+.+++.+        ++++.|.+.++.+
T Consensus       145 ~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  213 (213)
T cd04167         145 NDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPSP  213 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCCC
Confidence            11           111122121       23    8899999999888        8999998888753

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.63  E-value=1.6e-07  Score=80.67  Aligned_cols=114  Identities=22%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC-CcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-DKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~v~~  306 (355)
                      ..+.+.++||||+..|.......+..+|++++|+|++...+.+.. ..+.....   .++|+++++||+|+. .+..+..
T Consensus        71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~~~e~~~~~  146 (222)
T cd01885          71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRLILELKLSP  146 (222)
T ss_pred             CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcchhhhcCCH
Confidence            367889999999999999888999999999999999988765542 22222222   478999999999975 2222222


Q ss_pred             HHHH-----------HHHhhc-------------Cc-E----EEEecCCCCC--------CHHHHHHHHHHHcCCC
Q psy15725        307 EEGE-----------RKAKEL-------------NV-M----FIETSAKAGY--------NVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~~~-----------~~~~~~-------------~~-~----~~~~SA~~~~--------gv~~l~~~l~~~i~~~  345 (355)
                      .++.           .+....             .+ |    +.++||+.|+        ++..+|+.++..+|.+
T Consensus       147 ~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~p  222 (222)
T cd01885         147 EEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHLPSP  222 (222)
T ss_pred             HHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHHHHHHHHhhCCCC
Confidence            2211           111111             12 5    8899999765        5667888888888763

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.63  E-value=7.7e-08  Score=82.96  Aligned_cols=102  Identities=22%  Similarity=0.195  Sum_probs=65.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN-------SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ....+.++|++|+..|...+...+..+|++++|+|+++..       ..+... ....... . ...|+++++||+|+..
T Consensus        75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~iiivvNK~Dl~~  151 (219)
T cd01883          75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE-HALLART-L-GVKQLIVAVNKMDDVT  151 (219)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH-HHHHHHH-c-CCCeEEEEEEcccccc
Confidence            4567899999998877766666678899999999998742       111221 1222222 1 2378999999999863


Q ss_pred             cc--cC-CH---HHHHHHHhhc-----CcEEEEecCCCCCCHH
Q psy15725        301 KR--QV-ST---EEGERKAKEL-----NVMFIETSAKAGYNVK  332 (355)
Q Consensus       301 ~~--~v-~~---~~~~~~~~~~-----~~~~~~~SA~~~~gv~  332 (355)
                      ..  .- ..   .....+....     .++++++||++|.||+
T Consensus       152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            21  00 00   1111122232     3689999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.63  E-value=1e-07  Score=81.55  Aligned_cols=101  Identities=20%  Similarity=0.195  Sum_probs=66.1

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCC-ceEEEEeeCCCCCCcccC---
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDKRQV---  304 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piilv~nK~Dl~~~~~v---  304 (355)
                      ...+.++||+|.+.|.......+..+|++++|+|++++..-+. ......+..   .+ .++|+|.||+|+.+...-   
T Consensus        76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~  151 (208)
T cd04166          76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSL---LGIRHVVVAVNKMDLVDYSEEVFE  151 (208)
T ss_pred             CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHH---cCCCcEEEEEEchhcccCCHHHHH
Confidence            4467799999998876655667889999999999987643222 122222222   23 458889999998642211   


Q ss_pred             -CHHHHHHHHhhcC---cEEEEecCCCCCCHHH
Q psy15725        305 -STEEGERKAKELN---VMFIETSAKAGYNVKQ  333 (355)
Q Consensus       305 -~~~~~~~~~~~~~---~~~~~~SA~~~~gv~~  333 (355)
                       ...+...+.+..+   ++++++||++|.|+++
T Consensus       152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence             0112233344444   4699999999999975

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.63  E-value=2.7e-07  Score=86.69  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceE-EEEeeCCCCCCcccCC-
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII-MLVGNKTDLSDKRQVS-  305 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~~v~-  305 (355)
                      +...+.++||||++.|..........+|++++|+|++.....+.. +.+..+..   .++|. |++.||+|+.+.+... 
T Consensus        73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~  148 (394)
T TIGR00485        73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ---VGVPYIVVFLNKCDMVDDEELLE  148 (394)
T ss_pred             CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCEEEEEEEecccCCHHHHHH
Confidence            345678999999988876555556788999999999875443322 33333333   46775 5789999987543221 


Q ss_pred             --HHHHHHHHhhcC-----cEEEEecCCCCC--------CHHHHHHHHHHHcCCCC
Q psy15725        306 --TEEGERKAKELN-----VMFIETSAKAGY--------NVKQLFRRVAAALPGMD  346 (355)
Q Consensus       306 --~~~~~~~~~~~~-----~~~~~~SA~~~~--------gv~~l~~~l~~~i~~~~  346 (355)
                        ..+...+.+..+     ++++++||++|.        ++.+++++|.+.++.+.
T Consensus       149 ~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~  204 (394)
T TIGR00485       149 LVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPE  204 (394)
T ss_pred             HHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCC
Confidence              123334444443     689999999875        46778888887766443

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.62  E-value=6.7e-07  Score=79.63  Aligned_cols=70  Identities=19%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .++|+|+|..|+|||||+|.|++........+.             ........++..+......+.-++..+.+.++||
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDT   70 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSI-------------PPPSASISRTLEIEERTVELEENGVKLNLTIIDT   70 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS----------------------S------SCEEEEEEEEEEEETCEEEEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccc-------------cccccccccccceeeEEEEeccCCcceEEEEEeC
Confidence            589999999999999999999996543221000             0111122233344444444455567888999999


Q ss_pred             CCc
Q psy15725         93 AGQ   95 (355)
Q Consensus        93 ~g~   95 (355)
                      ||-
T Consensus        71 pGf   73 (281)
T PF00735_consen   71 PGF   73 (281)
T ss_dssp             C-C
T ss_pred             CCc
Confidence            993

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.62  E-value=2.6e-08  Score=74.83  Aligned_cols=129  Identities=22%  Similarity=0.256  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||++||..|+|||||++++-+...                                  ..+++-.++++.  =..+||||
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~----------------------------------lykKTQAve~~d--~~~IDTPG   46 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT----------------------------------LYKKTQAVEFND--KGDIDTPG   46 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh----------------------------------hhcccceeeccC--ccccCCch
Confidence            799999999999999999987321                                  111111111110  12579998


Q ss_pred             c----ccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         95 Q----ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        95 ~----~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      .    ..+.........++|++++|-.++++++.-.- .+                                        
T Consensus        47 Ey~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p-~f----------------------------------------   85 (148)
T COG4917          47 EYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPP-GF----------------------------------------   85 (148)
T ss_pred             hhhhhhHHHHHHHHHhhccceeeeeecccCccccCCc-cc----------------------------------------
Confidence            4    22222333446789999999999997553110 00                                        


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccC-eEEEEeeeeeccccce
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQ  229 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~  229 (355)
                             ...-..|+|=|++|.|+..+..+.  ....+..+.+ .+++.+|+..+.+++.
T Consensus        86 -------~~~~~k~vIgvVTK~DLaed~dI~--~~~~~L~eaGa~~IF~~s~~d~~gv~~  136 (148)
T COG4917          86 -------LDIGVKKVIGVVTKADLAEDADIS--LVKRWLREAGAEPIFETSAVDNQGVEE  136 (148)
T ss_pred             -------ccccccceEEEEecccccchHhHH--HHHHHHHHcCCcceEEEeccCcccHHH
Confidence                   111256699999999998544332  3334444444 4788888877766654

>KOG0084|consensus

Probab=98.61  E-value=8.9e-08  Score=77.91  Aligned_cols=69  Identities=39%  Similarity=0.768  Sum_probs=57.7

Q ss_pred             hhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        209 AKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       209 ~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+++.+...+..  ...+.++++||||+|+++|+++..++|+++++||+|||+++.+||+.+..|+.++
T Consensus        39 ~sTIGVDf~~rt~e--~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei  107 (205)
T KOG0084|consen   39 ISTIGVDFKIRTVE--LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEI  107 (205)
T ss_pred             cceeeeEEEEEEee--ecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHh
Confidence            34455555544432  3456789999999999999999999999999999999999999999999999876

>KOG0094|consensus

Probab=98.61  E-value=2.1e-07  Score=75.58  Aligned_cols=63  Identities=73%  Similarity=1.110  Sum_probs=55.8

Q ss_pred             eeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy15725        220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE  282 (355)
Q Consensus       220 sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~  282 (355)
                      |-........+.+++|||+|+++|+.+++.|++++.++|+|||+++..+|++..+|++.+...
T Consensus        61 skt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e  123 (221)
T KOG0094|consen   61 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRE  123 (221)
T ss_pred             EEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhc
Confidence            333334445889999999999999999999999999999999999999999999999999873

>KOG0092|consensus

Probab=98.60  E-value=3e-07  Score=74.63  Aligned_cols=68  Identities=37%  Similarity=0.826  Sum_probs=58.9

Q ss_pred             hccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        210 KELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       210 ~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..++..|.......+..  .+.+.||||+|+++|+++.+.||++++++|+|||+++..||..+..|++++
T Consensus        36 ~TIGaaF~tktv~~~~~--~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL  103 (200)
T KOG0092|consen   36 PTIGAAFLTKTVTVDDN--TIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKEL  103 (200)
T ss_pred             cccccEEEEEEEEeCCc--EEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHH
Confidence            34566777666554443  789999999999999999999999999999999999999999999999876

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.58  E-value=1.1e-07  Score=79.23  Aligned_cols=98  Identities=16%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             EEEEEeCCCcc----------ccccccccccc---CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725        231 RLQLWDTAGQE----------RFRSLIPSYIR---DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD  297 (355)
Q Consensus       231 ~~~i~D~~g~~----------~~~~~~~~~~~---~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D  297 (355)
                      .+.+||++|..          .+......++.   .++++++|+|.+++.+..+. .....+..   .++|+++++||+|
T Consensus        65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D  140 (179)
T TIGR03598        65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKAD  140 (179)
T ss_pred             cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcc
Confidence            46899999942          22222223333   45799999999876654443 22333333   4799999999999


Q ss_pred             CCCcccC--CHHHHHHHHhhcC--cEEEEecCCCCCCHH
Q psy15725        298 LSDKRQV--STEEGERKAKELN--VMFIETSAKAGYNVK  332 (355)
Q Consensus       298 l~~~~~v--~~~~~~~~~~~~~--~~~~~~SA~~~~gv~  332 (355)
                      +......  ..++........+  ++++++||++|+|++
T Consensus       141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            8643221  1222233333333  589999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.57  E-value=4.9e-07  Score=91.10  Aligned_cols=109  Identities=14%  Similarity=0.152  Sum_probs=80.6

Q ss_pred             ceEEEEEEeCCCcccccccc----------ccc--ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeC
Q psy15725        228 KQVRLQLWDTAGQERFRSLI----------PSY--IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNK  295 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~----------~~~--~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK  295 (355)
                      +...+.++|+||...+....          ..+  ...+|++++|+|.++.+..   ..+...+.+   .++|+++++||
T Consensus        48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK  121 (772)
T PRK09554         48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNM  121 (772)
T ss_pred             CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEc
Confidence            34567899999987765321          122  2478999999999875432   223444444   58999999999


Q ss_pred             CCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        296 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       296 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      .|+.+.+.+. .....+.+..++|++++||++|.|++++++.+.+...
T Consensus       122 ~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        122 LDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQA  168 (772)
T ss_pred             hhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhhh
Confidence            9986554443 3455677788999999999999999999999988754

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=98.55  E-value=3.2e-07  Score=78.09  Aligned_cols=112  Identities=18%  Similarity=0.286  Sum_probs=78.3

Q ss_pred             eEEEEEEeCCCcccccccccccccCC-cEEEEEEeCCCc-ccHHHHHHHHHHHHhhc---CCCceEEEEeeCCCCCCccc
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDS-TVAVVVYDITNA-NSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~-~~vi~v~d~~~~-~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~~~~~  303 (355)
                      ...+.+||+||+..++..+..++..+ +++|+|+|+++. .++....+++..+....   ..++|+++++||+|+.....
T Consensus        47 ~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~  126 (203)
T cd04105          47 GKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP  126 (203)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence            45678999999999998888889998 999999999987 56666666655543221   25899999999999853211


Q ss_pred             ---CCHHHHHH----------------------------------HHh-hcCcEEEEecCCCCC-CHHHHHHHHHH
Q psy15725        304 ---VSTEEGER----------------------------------KAK-ELNVMFIETSAKAGY-NVKQLFRRVAA  340 (355)
Q Consensus       304 ---v~~~~~~~----------------------------------~~~-~~~~~~~~~SA~~~~-gv~~l~~~l~~  340 (355)
                         +......+                                  +.+ ...+.+++||++.+. |++..-+||.+
T Consensus       127 ~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         127 AKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence               11111000                                  000 011468899999877 69999998864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0099|consensus

Probab=98.52  E-value=2e-08  Score=85.05  Aligned_cols=121  Identities=20%  Similarity=0.255  Sum_probs=84.1

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc----------cHHHHHHHHHHHHhhcC-CCceEEEEe
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN----------SFHQTSKWIDDVRTERG-SDVIIMLVG  293 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~----------s~~~~~~~~~~i~~~~~-~~~piilv~  293 (355)
                      ..++.+.+..+|.+|+...+..|-..+.+..++|||+.+++..          .+++....++.+....- ..+.+|+.+
T Consensus       197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL  276 (379)
T KOG0099|consen  197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL  276 (379)
T ss_pred             EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence            4566777899999999999999999999999999999886532          22333334455533222 568899999


Q ss_pred             eCCCCCCc---------------------------------ccCCHH-----HHHHHHh-----hcCcEEEEecCCCCCC
Q psy15725        294 NKTDLSDK---------------------------------RQVSTE-----EGERKAK-----ELNVMFIETSAKAGYN  330 (355)
Q Consensus       294 nK~Dl~~~---------------------------------~~v~~~-----~~~~~~~-----~~~~~~~~~SA~~~~g  330 (355)
                      ||.|+..+                                 +.+...     +......     .+.|...+++|..-+|
T Consensus       277 NKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTen  356 (379)
T KOG0099|consen  277 NKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN  356 (379)
T ss_pred             cHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHH
Confidence            99998311                                 111111     1111111     1237788999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q psy15725        331 VKQLFRRVAAALPGM  345 (355)
Q Consensus       331 v~~l~~~l~~~i~~~  345 (355)
                      |..+|..+.+.|.+.
T Consensus       357 IrrVFnDcrdiIqr~  371 (379)
T KOG0099|consen  357 IRRVFNDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888654

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.51  E-value=2.6e-06  Score=74.38  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=51.9

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHH--H----hhcCc--EEEEe
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK--A----KELNV--MFIET  323 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--~----~~~~~--~~~~~  323 (355)
                      .-+|.++++.=+.....++-++.=   +.+     +--++|.||.|....+....+...++  .    ...+|  |++.+
T Consensus       163 ~~aDt~~~v~~pg~GD~~Q~iK~G---imE-----iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t  234 (323)
T COG1703         163 NMADTFLVVMIPGAGDDLQGIKAG---IME-----IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTT  234 (323)
T ss_pred             hhcceEEEEecCCCCcHHHHHHhh---hhh-----hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEe
Confidence            347777877755555444443322   322     34589999999653322111222221  1    12334  89999


Q ss_pred             cCCCCCCHHHHHHHHHHHcC
Q psy15725        324 SAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       324 SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ||.+|+||+++++.|.+...
T Consensus       235 ~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         235 SALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             eeccCCCHHHHHHHHHHHHH
Confidence            99999999999999987654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.50  E-value=2.1e-07  Score=71.87  Aligned_cols=66  Identities=35%  Similarity=0.758  Sum_probs=54.7

Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHH---HHHHHHhhcCCCceEEEEeeCCC
Q psy15725        231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK---WIDDVRTERGSDVIIMLVGNKTD  297 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~piilv~nK~D  297 (355)
                      .+.+||++|.+.+...+...+..+|++++|||++++.+++.+.+   |+..+.... .++|+++|+||.|
T Consensus        51 ~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   51 SLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            38899999999888887777999999999999999999988754   556555443 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01900 YchF YchF subfamily

Probab=98.48  E-value=2.6e-07  Score=81.65  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChhHHHHHhhhcCC
Q psy15725         16 LVFLGEQSVGKTSLITRFMYDSF   38 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~~~   38 (355)
                      |++||.||||||||+|++++...
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~   23 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA   23 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC
Confidence            57999999999999999999653

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.47  E-value=5.1e-07  Score=82.43  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ++|++||.||||||||+|++++..
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~   26 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG   26 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999999865

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.47  E-value=1.2e-06  Score=83.23  Aligned_cols=103  Identities=20%  Similarity=0.192  Sum_probs=70.3

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc---H---HHHHHHHHHHHhhcCCCce-EEEEeeCCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---F---HQTSKWIDDVRTERGSDVI-IMLVGNKTDLS  299 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~  299 (355)
                      .+...+.++|+||++.|.......+..+|++++|+|+++..-   +   ....+....+..   .++| +|++.||.|+.
T Consensus        82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDAT  158 (447)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCC
Confidence            346688999999999999888888899999999999987421   1   111122222222   5775 78899999975


Q ss_pred             CcccCC-------HHHHHHHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725        300 DKRQVS-------TEEGERKAKELN-----VMFIETSAKAGYNVKQ  333 (355)
Q Consensus       300 ~~~~v~-------~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~  333 (355)
                      +.. +.       .++...+.+..+     ++++++||.+|.|+.+
T Consensus       159 ~~~-~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPK-YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chh-hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211 11       223344444444     6899999999999853

>cd01858 NGP_1 NGP-1

Probab=98.46  E-value=7.7e-07  Score=72.51  Aligned_cols=90  Identities=16%  Similarity=0.115  Sum_probs=58.6

Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                      .+.++|.+++|+|.+++..... ......+.. ...++|+++|+||+|+..++.. ......+.+...+.++++||+++.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~   81 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF   81 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC-HHHHHHHHh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence            3578999999999988743211 122222222 2246899999999999644321 112222333222346889999999


Q ss_pred             CHHHHHHHHHHHc
Q psy15725        330 NVKQLFRRVAAAL  342 (355)
Q Consensus       330 gv~~l~~~l~~~i  342 (355)
                      |++++++.|....
T Consensus        82 ~~~~L~~~l~~~~   94 (157)
T cd01858          82 GKGSLIQLLRQFS   94 (157)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999998764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.46  E-value=5.6e-07  Score=83.31  Aligned_cols=95  Identities=29%  Similarity=0.405  Sum_probs=69.2

Q ss_pred             cccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH----HHHhh
Q psy15725        240 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAKE  315 (355)
Q Consensus       240 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~~  315 (355)
                      .+.|..+...++..++++++|+|+.+...     .|...+.+.. .+.|+++|+||+|+... ....+...    ..++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            45677777888889999999999876552     2444444443 37899999999998643 23333333    23455


Q ss_pred             cCc---EEEEecCCCCCCHHHHHHHHHHH
Q psy15725        316 LNV---MFIETSAKAGYNVKQLFRRVAAA  341 (355)
Q Consensus       316 ~~~---~~~~~SA~~~~gv~~l~~~l~~~  341 (355)
                      .++   .++++||++|.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            665   48999999999999999999775

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>CHL00071 tufA elongation factor Tu

Probab=98.46  E-value=1.1e-06  Score=82.87  Aligned_cols=114  Identities=15%  Similarity=0.138  Sum_probs=77.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~  306 (355)
                      +...+.++|+||+..|.......+..+|++++|+|+.....-+. .+.+..+..   .++| +|++.||+|+.+......
T Consensus        73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~  148 (409)
T CHL00071         73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLE  148 (409)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHH
Confidence            34567799999988876666666788999999999987654332 223333333   5788 789999999975332211


Q ss_pred             ---HHHHHHHhhcC-----cEEEEecCCCCC------------------CHHHHHHHHHHHcCCC
Q psy15725        307 ---EEGERKAKELN-----VMFIETSAKAGY------------------NVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ---~~~~~~~~~~~-----~~~~~~SA~~~~------------------gv~~l~~~l~~~i~~~  345 (355)
                         .+...+.+..+     ++++++||.+|.                  ++.+++++|.+.++..
T Consensus       149 ~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p  213 (409)
T CHL00071        149 LVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTP  213 (409)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCC
Confidence               12333333332     689999999986                  3678999998887654

>KOG1143|consensus

Probab=98.45  E-value=5.9e-06  Score=73.81  Aligned_cols=108  Identities=17%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeeccc----CCCCCccccccceeeeeeeeeec----
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMY----DSFDNTYQATIGIDFLSKTMYLE----   81 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~t~~~~~~~~~~~~~----   81 (355)
                      ..-.++++|+|-..+|||||+--|+.+..+...-.+-    ..+-|++.    +..+......+|++.....+.+.    
T Consensus       164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrAR----ln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t  239 (591)
T KOG1143|consen  164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRAR----LNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT  239 (591)
T ss_pred             cceEEEEEEecCcccCcceeeeeeecccccCCCCeee----eehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence            4557999999999999999999999888766543331    11111211    11111223345555443333321    


Q ss_pred             ------CcEEEEEEEecCCcccccccccccccC--ccEEEEEEECCCc
Q psy15725         82 ------DRTVRLQLWDTAGQERFRSLIPSYIRD--STVAVVVYDITNA  121 (355)
Q Consensus        82 ------~~~~~~~i~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~  121 (355)
                            ...--+.++|+.|+.+|.......+.+  .+.+++|+.+...
T Consensus       240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G  287 (591)
T KOG1143|consen  240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG  287 (591)
T ss_pred             HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC
Confidence                  122357899999999998877666654  5889999988774

>KOG1487|consensus

Probab=98.44  E-value=1.4e-06  Score=73.95  Aligned_cols=89  Identities=18%  Similarity=0.239  Sum_probs=59.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCcccccc-ceeeeeeeeeecCcEEEEEEEe
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI-GIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..++.++|-|.+|||||+..+.+.. .+.                         +.. +....+....+.++.-.+++.|
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~-s~v-------------------------asyefttl~~vpG~~~y~gaKiqlld  112 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTF-SEV-------------------------AAYEFTTLTTVPGVIRYKGAKIQLLD  112 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCC-Ccc-------------------------ccccceeEEEecceEeccccceeeec
Confidence            3578999999999999999988732 111                         111 1122223334445667899999


Q ss_pred             cCCccc-------ccccccccccCccEEEEEEECCCcchhhhH
Q psy15725         92 TAGQER-------FRSLIPSYIRDSTVAVVVYDITNANSFHQT  127 (355)
Q Consensus        92 ~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~  127 (355)
                      +||.-+       -........+.|..+++|.|+..|-+-..+
T Consensus       113 lpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~  155 (358)
T KOG1487|consen  113 LPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKI  155 (358)
T ss_pred             CcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHH
Confidence            999632       122344557889999999999998776554

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.43  E-value=3.6e-07  Score=89.28  Aligned_cols=90  Identities=21%  Similarity=0.205  Sum_probs=67.6

Q ss_pred             EEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHH
Q psy15725        232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER  311 (355)
Q Consensus       232 ~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  311 (355)
                      +.+|||+|++.|..++..++..+|++++|+|+++....++.. .+..+..   .++|+++++||+|+..          .
T Consensus        71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e-~i~~l~~---~~vpiIVv~NK~Dl~~----------~  136 (590)
T TIGR00491        71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQE-ALNILRM---YKTPFVVAANKIDRIP----------G  136 (590)
T ss_pred             EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHH-HHHHHHH---cCCCEEEEEECCCccc----------h
Confidence            789999999999999999999999999999998754333321 1222222   5799999999999853          2


Q ss_pred             HHhhcCcEEEEecCCCCCCHHHHH
Q psy15725        312 KAKELNVMFIETSAKAGYNVKQLF  335 (355)
Q Consensus       312 ~~~~~~~~~~~~SA~~~~gv~~l~  335 (355)
                      ++...+++++++||+.+.++..-+
T Consensus       137 ~~~~~~~~f~e~sak~~~~v~~~~  160 (590)
T TIGR00491       137 WRSHEGRPFMESFSKQEIQVQQNL  160 (590)
T ss_pred             hhhccCchHHHHHHhhhHHHHHHH
Confidence            334556789999999988765443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG1489|consensus

Probab=98.42  E-value=1.6e-06  Score=75.88  Aligned_cols=107  Identities=21%  Similarity=0.250  Sum_probs=77.7

Q ss_pred             EEEEeCCCccccccc-------ccccccCCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhc--CCCceEEEEeeCCCCC
Q psy15725        232 LQLWDTAGQERFRSL-------IPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLS  299 (355)
Q Consensus       232 ~~i~D~~g~~~~~~~-------~~~~~~~~~~vi~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~  299 (355)
                      +++.|.||--+-..+       .-.+++.|+..+||+|++..   +.++.+.....++.-+.  ..+.|.++|+||+|+.
T Consensus       246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence            788999994333222       22456789999999999998   88888877776665443  3789999999999985


Q ss_pred             CcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHH
Q psy15725        300 DKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAA  341 (355)
Q Consensus       300 ~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~  341 (355)
                      +.+.   ....++++...- .++++||++++|++++++.|...
T Consensus       326 eae~---~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  326 EAEK---NLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             hHHH---HHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence            2211   112445555443 59999999999999999988754

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.41  E-value=9.5e-07  Score=84.67  Aligned_cols=104  Identities=20%  Similarity=0.189  Sum_probs=66.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      +...+.++||||++.|.......+..+|++++|+|++....-+....+  .+.... .-.|++++.||+|+.+.+.-...
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLL-GIKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHh-CCCceEEEEEeeccccchhHHHH
Confidence            355778999999988865544556899999999999876432221111  122221 12479999999998643221111


Q ss_pred             H----HHHHHhhc----CcEEEEecCCCCCCHHHH
Q psy15725        308 E----GERKAKEL----NVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       308 ~----~~~~~~~~----~~~~~~~SA~~~~gv~~l  334 (355)
                      +    ...+.+..    ..+++++||++|.|++++
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1    11222222    368999999999999763

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.41  E-value=7e-07  Score=76.55  Aligned_cols=84  Identities=13%  Similarity=0.153  Sum_probs=47.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      ++|+++|..|+||||++|.+++.......                 .    ....+...........++  ..+.++|||
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~-----------------~----~~~~~t~~~~~~~~~~~g--~~v~VIDTP   57 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSG-----------------S----SAKSVTQECQKYSGEVDG--RQVTVIDTP   57 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------T----TTSS--SS-EEEEEEETT--EEEEEEE--
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeec-----------------c----ccCCcccccceeeeeecc--eEEEEEeCC
Confidence            58999999999999999999996532210                 0    000111122223334444  568999999


Q ss_pred             Ccccccc--------cc---cccccCccEEEEEEECCC
Q psy15725         94 GQERFRS--------LI---PSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        94 g~~~~~~--------~~---~~~~~~~d~ii~v~d~~~  120 (355)
                      |..+-..        +.   .....+.+++++|+.+.+
T Consensus        58 Gl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r   95 (212)
T PF04548_consen   58 GLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR   95 (212)
T ss_dssp             SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB
T ss_pred             CCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc
Confidence            9532111        11   112346899999999983

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.41  E-value=1.2e-06  Score=82.65  Aligned_cols=102  Identities=23%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH--
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--  306 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--  306 (355)
                      ...+.++||||++.|.......+..+|++++|+|++.+..-+....+.  +.... ...+++++.||+|+.+.+.-..  
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~-~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLL-GIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHc-CCCcEEEEEEecccccchHHHHHH
Confidence            457789999999988765556778999999999998765433222221  22221 1345899999999864321111  


Q ss_pred             --HHHHHHHhhcC---cEEEEecCCCCCCHHH
Q psy15725        307 --EEGERKAKELN---VMFIETSAKAGYNVKQ  333 (355)
Q Consensus       307 --~~~~~~~~~~~---~~~~~~SA~~~~gv~~  333 (355)
                        .+...+.+..+   ++++++||++|.|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              11222233333   4799999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=6e-07  Score=80.89  Aligned_cols=89  Identities=18%  Similarity=0.282  Sum_probs=54.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeeeee--------ee--ecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT--------MY--LED   82 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~--------~~--~~~   82 (355)
                      +++.+||.||||||||+|+++..... ..|+-+.                  ..|..|.-+.+.-        ..  -..
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~T------------------IePN~Giv~v~d~rl~~L~~~~~c~~k~   64 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCT------------------IEPNVGVVYVPDCRLDELAEIVKCPPKI   64 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCccccCCCccc------------------ccCCeeEEecCchHHHHHHHhcCCCCcE
Confidence            68999999999999999999997632 2332221                  1222222111110        00  011


Q ss_pred             cEEEEEEEecCCc----ccccccccc---cccCccEEEEEEECCC
Q psy15725         83 RTVRLQLWDTAGQ----ERFRSLIPS---YIRDSTVAVVVYDITN  120 (355)
Q Consensus        83 ~~~~~~i~D~~g~----~~~~~~~~~---~~~~~d~ii~v~d~~~  120 (355)
                      ....+.++|.+|.    +.=+.+-..   -+|++|+++.|+|+..
T Consensus        65 ~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          65 RPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             EeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence            2457899999885    222333333   3679999999999874

>cd00066 G-alpha G protein alpha subunit

Probab=98.36  E-value=7.3e-07  Score=81.12  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=36.7

Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      .+.+.+.+||++|+...+..|..++.+++++++|+|+++-
T Consensus       158 ~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~  197 (317)
T cd00066         158 IKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEY  197 (317)
T ss_pred             ecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhc
Confidence            3467899999999999999999999999999999999984

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0461|consensus

Probab=98.35  E-value=3.1e-06  Score=74.85  Aligned_cols=100  Identities=20%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee-------ec
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-------LE   81 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~   81 (355)
                      .+..++++.++|+-.+|||||..++..-.-...              |  +..+......+..+.....+.       ..
T Consensus         3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaA--------------F--Dk~pqS~eRgiTLDLGFS~~~v~~parLpq   66 (522)
T KOG0461|consen    3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAA--------------F--DKHPQSTERGITLDLGFSTMTVLSPARLPQ   66 (522)
T ss_pred             CCCceeeeeeEeeccCchHHHHHHHHhhccchh--------------h--ccCCcccccceeEeecceeeecccccccCc
Confidence            345679999999999999999999876221000              0  111111112222222211111       23


Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchh
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF  124 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~  124 (355)
                      +...++.++|+||+...-+.......-.|..++|+|+...-.-
T Consensus        67 ~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~Qt  109 (522)
T KOG0461|consen   67 GEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQT  109 (522)
T ss_pred             cccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhccccc
Confidence            5568899999999865544444444556899999999875433

>KOG0077|consensus

Probab=98.35  E-value=6.2e-07  Score=70.87  Aligned_cols=116  Identities=16%  Similarity=0.233  Sum_probs=91.5

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCccc
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~  303 (355)
                      ..+.++..+.+|.+|+..-+..|..++..++++++.+|+-+.+.+.+....++.+.... -..+|+++.+||+|.+..  
T Consensus        59 l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--  136 (193)
T KOG0077|consen   59 LSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--  136 (193)
T ss_pred             heecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--
Confidence            45678889999999999999999999999999999999999999998888777765433 278999999999998533  


Q ss_pred             CCHHHHHH---HHhh-----------cC---cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        304 VSTEEGER---KAKE-----------LN---VMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       304 v~~~~~~~---~~~~-----------~~---~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      .+.++...   +.+.           .+   ..+|.||...+.|--+.|.|+..+|
T Consensus       137 ~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  137 ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence            33333221   1111           11   3589999999999999999998776

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.35  E-value=1.9e-06  Score=70.10  Aligned_cols=83  Identities=17%  Similarity=0.097  Sum_probs=55.9

Q ss_pred             cEEEEEEeCCCcccHHHHHHHHH-HHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        255 TVAVVVYDITNANSFHQTSKWID-DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      |.+++|+|++++.+...  .++. ....  ..++|+++|+||+|+.+...+. .....+....+.+++++||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIK--EKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHh--cCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChhh
Confidence            67899999988765443  2333 1211  1579999999999996443221 111123233346789999999999999


Q ss_pred             HHHHHHHHc
Q psy15725        334 LFRRVAAAL  342 (355)
Q Consensus       334 l~~~l~~~i  342 (355)
                      +++.|.+..
T Consensus        76 L~~~i~~~~   84 (155)
T cd01849          76 KESAFTKQT   84 (155)
T ss_pred             HHHHHHHHh
Confidence            999997754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0705|consensus

Probab=98.34  E-value=4.5e-07  Score=84.41  Aligned_cols=151  Identities=20%  Similarity=0.375  Sum_probs=107.8

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+|+.|||..++|||+|++|++.+.|.....|.-                         ....+.+..++....+.+
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~-------------------------~~~kkE~vv~gqs~lLli   81 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG-------------------------GRFKKEVVVDGQSHLLLI   81 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcC-------------------------ccceeeEEeeccceEeee
Confidence            3577999999999999999999999977765543322                         122344445677777888


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      .|.+|...     ..+...+|++||||.+.+.++|+.+..+..++...+.                              
T Consensus        82 rdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~------------------------------  126 (749)
T KOG0705|consen   82 RDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN------------------------------  126 (749)
T ss_pred             ecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccc------------------------------
Confidence            88888322     3567789999999999999999999888777754321                              


Q ss_pred             cccccccccCCCccEEEEEeecCCC--Ccccceehhhhhhhhh-ccCeEEEEeeeeeccccceE
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDL--SDKRQVSTEEGERKAK-ELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~--~~~~~v~~~~~~~~~~-~~~~~~~~~sa~~~~~v~~i  230 (355)
                                ...+|+++++++.-.  ..++.+......+++. ...+.+++..+.++.++...
T Consensus       127 ----------r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv  180 (749)
T KOG0705|consen  127 ----------ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV  180 (749)
T ss_pred             ----------cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence                      347888888886533  2334555555555444 45678888888888887654

>smart00275 G_alpha G protein alpha subunit

Probab=98.34  E-value=9.6e-07  Score=81.03  Aligned_cols=52  Identities=15%  Similarity=0.178  Sum_probs=41.5

Q ss_pred             ccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        66 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      .||.|+....-    ..+...+.+||+||+...+..|..++.++++++||+|+++-
T Consensus       169 ~~T~Gi~~~~f----~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~  220 (342)
T smart00275      169 VPTTGIQETAF----IVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEY  220 (342)
T ss_pred             CCccceEEEEE----EECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECccc
Confidence            45666543322    23446789999999999999999999999999999999973

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.33  E-value=2.9e-06  Score=82.01  Aligned_cols=100  Identities=16%  Similarity=0.286  Sum_probs=56.8

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .++|+++|.+||||||++|++++......                 +.+..   .|..  ........++  ..+.++||
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~v-----------------ss~~~---~TTr--~~ei~~~idG--~~L~VIDT  173 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFST-----------------DAFGM---GTTS--VQEIEGLVQG--VKIRVIDT  173 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccc-----------------cCCCC---CceE--EEEEEEEECC--ceEEEEEC
Confidence            47999999999999999999998542111                 11101   1111  1111222233  57999999


Q ss_pred             CCccccc-------cc---cccccc--CccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         93 AGQERFR-------SL---IPSYIR--DSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        93 ~g~~~~~-------~~---~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      ||.....       .+   ...++.  ..|++|+|+.++.......-..+++.+..
T Consensus       174 PGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~  229 (763)
T TIGR00993       174 PGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITD  229 (763)
T ss_pred             CCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHH
Confidence            9975431       11   111223  57999999988643332222344454443

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.32  E-value=1.3e-06  Score=80.42  Aligned_cols=165  Identities=18%  Similarity=0.220  Sum_probs=109.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee--e---cCcEEEE
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY--L---EDRTVRL   87 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~---~~~~~~~   87 (355)
                      --|..++.+-..|||||..|++...-.-       .......+++ ++.+-+...  |++.....+.  +   ++....+
T Consensus         9 IRNFsIIAHIDHGKSTLaDRlle~t~~~-------~~Rem~~Q~L-DsMdiERER--GITIKaq~v~l~Yk~~~g~~Y~l   78 (603)
T COG0481           9 IRNFSIIAHIDHGKSTLADRLLELTGGL-------SEREMRAQVL-DSMDIERER--GITIKAQAVRLNYKAKDGETYVL   78 (603)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhcCc-------ChHHHHHHhh-hhhhhHhhc--CceEEeeEEEEEEEeCCCCEEEE
Confidence            3578999999999999999998843211       1111111111 222222222  3333322222  2   3467899


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      +++||||+-+|.-.....+..|.|+++|+|++..-.-+.+...|-.+.+                               
T Consensus        79 nlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-------------------------------  127 (603)
T COG0481          79 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-------------------------------  127 (603)
T ss_pred             EEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-------------------------------
Confidence            9999999999999998999999999999999987666666666666643                               


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe---EEEEeeeeeccccceEEEEE
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV---MFIETSAKAGYNVKQVRLQL  234 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~---~~~~~sa~~~~~v~~i~~~i  234 (355)
                                    +.-++-|.||.|++...  .+....+..+-++.   ....+|+++|.+++.+.-.|
T Consensus       128 --------------~LeIiPViNKIDLP~Ad--pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~I  181 (603)
T COG0481         128 --------------NLEIIPVLNKIDLPAAD--PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAI  181 (603)
T ss_pred             --------------CcEEEEeeecccCCCCC--HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHH
Confidence                          77899999999997542  12223333344443   57889999999988764333

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.31  E-value=1.1e-06  Score=70.33  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      +++++|.+|||||||+|++.+..
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~  107 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKK  107 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            89999999999999999999854

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.29  E-value=1.9e-06  Score=74.09  Aligned_cols=83  Identities=16%  Similarity=0.126  Sum_probs=49.4

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH--HHHHhh--cCc--EEEEecC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG--ERKAKE--LNV--MFIETSA  325 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~--~~~~~~--~~~--~~~~~SA  325 (355)
                      .-+|.+++|.-+.....++-++.-+-+        ++-++|.||.|....+....+..  ..+...  .+|  |++.+||
T Consensus       141 ~~aD~~v~v~~Pg~GD~iQ~~KaGimE--------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA  212 (266)
T PF03308_consen  141 DMADTVVLVLVPGLGDEIQAIKAGIME--------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSA  212 (266)
T ss_dssp             TTSSEEEEEEESSTCCCCCTB-TTHHH--------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBT
T ss_pred             HhcCeEEEEecCCCccHHHHHhhhhhh--------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEe
Confidence            347888888877655554433222222        35689999999643322222212  222221  223  8999999


Q ss_pred             CCCCCHHHHHHHHHHHc
Q psy15725        326 KAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       326 ~~~~gv~~l~~~l~~~i  342 (355)
                      .++.||+++++.|.+.-
T Consensus       213 ~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  213 LEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999998753

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.28  E-value=3.6e-06  Score=68.76  Aligned_cols=108  Identities=19%  Similarity=0.268  Sum_probs=67.1

Q ss_pred             EEEEEeCCCcc----------ccccccccccc---CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725        231 RLQLWDTAGQE----------RFRSLIPSYIR---DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD  297 (355)
Q Consensus       231 ~~~i~D~~g~~----------~~~~~~~~~~~---~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D  297 (355)
                      .+.++|++|..          .+......++.   ..+.+++++|.+...+.... .....+..   .+.|+++++||+|
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~---~~~~vi~v~nK~D  121 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE---LGIPFLVVLTKAD  121 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH---cCCCEEEEEEchh
Confidence            67789999832          23333333333   45688889988766432221 12222332   3689999999999


Q ss_pred             CCCcccCCH--HHHHHHHh--hcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        298 LSDKRQVST--EEGERKAK--ELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       298 l~~~~~v~~--~~~~~~~~--~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      +.++.....  .......+  ....+++++||+++.|+++++++|.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         122 KLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             cCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            864432211  11111222  2346899999999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PLN03126 Elongation factor Tu; Provisional

Probab=98.28  E-value=5.6e-06  Score=79.17  Aligned_cols=112  Identities=15%  Similarity=0.138  Sum_probs=76.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~  306 (355)
                      +...+.++|+||++.|.......+..+|++++|+|+.+...-+. .+++..+..   .++| ++++.||+|+.+.+....
T Consensus       142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~  217 (478)
T PLN03126        142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLE  217 (478)
T ss_pred             CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEecccccCHHHHHH
Confidence            34567899999999887766666778999999999987754333 233333333   4788 888999999975332211


Q ss_pred             ---HHHHHHHhhc-----CcEEEEecCCCCCC------------------HHHHHHHHHHHcC
Q psy15725        307 ---EEGERKAKEL-----NVMFIETSAKAGYN------------------VKQLFRRVAAALP  343 (355)
Q Consensus       307 ---~~~~~~~~~~-----~~~~~~~SA~~~~g------------------v~~l~~~l~~~i~  343 (355)
                         .+...+....     .++++++||.+|.+                  +.++++.|.+.++
T Consensus       218 ~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~  280 (478)
T PLN03126        218 LVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIP  280 (478)
T ss_pred             HHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCC
Confidence               1223333332     46899999998742                  5678888887654

>cd01858 NGP_1 NGP-1

Probab=98.26  E-value=2.2e-06  Score=69.81  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=23.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..++|+++|.+|||||||+|++.+..
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~  126 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKK  126 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCC
Confidence            46789999999999999999998844

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.24  E-value=2.5e-06  Score=83.64  Aligned_cols=97  Identities=22%  Similarity=0.214  Sum_probs=72.0

Q ss_pred             EEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHH
Q psy15725        232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER  311 (355)
Q Consensus       232 ~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  311 (355)
                      +.+|||||++.|..++...+..+|++++|+|+++...-+.. ..+..+..   .++|+++++||+|+..          .
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~-e~i~~~~~---~~vpiIvviNK~D~~~----------~  138 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTI-EAINILKR---RKTPFVVAANKIDRIP----------G  138 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCch----------h
Confidence            57999999999999888888999999999999874322221 11222222   5899999999999741          1


Q ss_pred             HHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        312 KAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       312 ~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      +....+.+++++|++++.++.+.|+.+...+
T Consensus       139 ~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev  169 (586)
T PRK04004        139 WKSTEDAPFLESIEKQSQRVQQELEEKLYEL  169 (586)
T ss_pred             hhhhcCchHHHHHhhhhHHHHHHHHHHHHHH
Confidence            2233457899999999999988887776554

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.23  E-value=5.1e-06  Score=76.94  Aligned_cols=111  Identities=22%  Similarity=0.226  Sum_probs=79.3

Q ss_pred             cccceEEEEEEeCCCcccccc--------cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q psy15725        225 YNVKQVRLQLWDTAGQERFRS--------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT  296 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~--------~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  296 (355)
                      .+++.+.+.++||+|-..-..        .....+..+|.+++++|.+.+.+-.+. ..+.    ....++|+++|.||.
T Consensus       260 i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~  334 (454)
T COG0486         260 INLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKA  334 (454)
T ss_pred             EEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEech
Confidence            456678899999999554332        233567899999999999986432221 2222    222689999999999


Q ss_pred             CCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        297 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       297 Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      |+.++......   ..  ..+.+++.+||++|+|++.+.+.|.+.+...
T Consensus       335 DL~~~~~~~~~---~~--~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         335 DLVSKIELESE---KL--ANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             hcccccccchh---hc--cCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            99765442211   11  1234799999999999999999999988776

>KOG0460|consensus

Probab=98.23  E-value=9.8e-06  Score=71.63  Aligned_cols=117  Identities=20%  Similarity=0.212  Sum_probs=83.6

Q ss_pred             EEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCc-c--cCCHH
Q psy15725        232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDK-R--QVSTE  307 (355)
Q Consensus       232 ~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~-~--~v~~~  307 (355)
                      +.=.|+||+..|....-.-....|+.|+|+..+|...-+.-+..  -+..+  -+++ +++..||.|+.++ +  +.-+.
T Consensus       119 YaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl--LLArQ--VGV~~ivvfiNKvD~V~d~e~leLVEm  194 (449)
T KOG0460|consen  119 YAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL--LLARQ--VGVKHIVVFINKVDLVDDPEMLELVEM  194 (449)
T ss_pred             cccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH--HHHHH--cCCceEEEEEecccccCCHHHHHHHHH
Confidence            44568999999988887888889999999999987754432221  12222  4666 8899999999833 2  23345


Q ss_pred             HHHHHHhhcC-----cEEEEecCCC---CC-------CHHHHHHHHHHHcCCCCCCCCCC
Q psy15725        308 EGERKAKELN-----VMFIETSAKA---GY-------NVKQLFRRVAAALPGMDSTENKP  352 (355)
Q Consensus       308 ~~~~~~~~~~-----~~~~~~SA~~---~~-------gv~~l~~~l~~~i~~~~~~~~~~  352 (355)
                      +.+++...+|     +|++..||+.   |.       -|.+|++++-.+||-+....++|
T Consensus       195 E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~p  254 (449)
T KOG0460|consen  195 EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKP  254 (449)
T ss_pred             HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCC
Confidence            5666666655     6899998873   31       27889999999999887666654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.22  E-value=2.3e-06  Score=70.55  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=22.8

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      .++++++|.+|||||||+|++++..
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~  141 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSR  141 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcc
Confidence            4799999999999999999999854

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.20  E-value=3.7e-05  Score=69.16  Aligned_cols=105  Identities=12%  Similarity=0.158  Sum_probs=59.8

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee----------
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM----------   78 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~----------   78 (355)
                      +....+.+.+.|+-+.|||||+-.|+.+..+...-.+        +.|+.....+ .-....-+.....+          
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~t--------R~~ldv~kHE-verGlsa~iS~~v~Gf~dgk~~rl  183 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGAT--------RSYLDVQKHE-VERGLSADISLRVYGFDDGKVVRL  183 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcch--------hhhhhhhhHH-HhhccccceeEEEEEecCCceEee
Confidence            3556899999999999999999999887654432221        1111000000 00000001111111          


Q ss_pred             -----------eecCcEEEEEEEecCCcccccccccccc--cCccEEEEEEECCCcc
Q psy15725         79 -----------YLEDRTVRLQLWDTAGQERFRSLIPSYI--RDSTVAVVVYDITNAN  122 (355)
Q Consensus        79 -----------~~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~  122 (355)
                                 .++.-+-.+.++||.|++.|-......+  .+.|-.++++.+++..
T Consensus       184 knPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~  240 (527)
T COG5258         184 KNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV  240 (527)
T ss_pred             cCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc
Confidence                       0111223568999999998866443333  4679999999998853

>cd01856 YlqF YlqF

Probab=98.19  E-value=4.9e-06  Score=68.79  Aligned_cols=88  Identities=18%  Similarity=0.143  Sum_probs=60.3

Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                      ...+.++|.+++++|.+.+....+. ...+    .. .++|+++|+||+|+.+...+  ....++.+..+..++.+||++
T Consensus        14 ~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~-~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~~   85 (171)
T cd01856          14 KEKLKLVDLVIEVRDARIPLSSRNP-LLEK----IL-GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAKS   85 (171)
T ss_pred             HHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hh-cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECCC
Confidence            4567889999999999876542221 1112    11 36899999999998643221  111122233345789999999


Q ss_pred             CCCHHHHHHHHHHHcC
Q psy15725        328 GYNVKQLFRRVAAALP  343 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~  343 (355)
                      +.|++++.+.|...++
T Consensus        86 ~~gi~~L~~~l~~~l~  101 (171)
T cd01856          86 GKGVKKLLKAAKKLLK  101 (171)
T ss_pred             cccHHHHHHHHHHHHH
Confidence            9999999999999865

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.18  E-value=7.4e-06  Score=77.99  Aligned_cols=112  Identities=21%  Similarity=0.183  Sum_probs=73.4

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc---HH---HHHHHHHHHHhhcCCCce-EEEEeeCCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---FH---QTSKWIDDVRTERGSDVI-IMLVGNKTDLS  299 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~  299 (355)
                      .+...+.++|+||+..|.......+..+|++++|+|++....   ++   ...+....+..   .++| +|++.||.|..
T Consensus        82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDK  158 (446)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence            356788999999999998777777889999999999987531   10   11122222322   5777 78999999953


Q ss_pred             C--cccCC----HHHHHHHHhhc-----CcEEEEecCCCCCCHHH------------HHHHHHHH
Q psy15725        300 D--KRQVS----TEEGERKAKEL-----NVMFIETSAKAGYNVKQ------------LFRRVAAA  341 (355)
Q Consensus       300 ~--~~~v~----~~~~~~~~~~~-----~~~~~~~SA~~~~gv~~------------l~~~l~~~  341 (355)
                      .  ..+-.    ..+...+....     .++++++||.+|.|+.+            |+++|...
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~  223 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL  223 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence            2  11111    11122222222     36899999999999964            77777654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.16  E-value=7.3e-06  Score=81.80  Aligned_cols=103  Identities=22%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH-
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST-  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~-  306 (355)
                      +...+.++||||++.|.......+..+|++++|+|++....-+... ....+...  ...|++++.||+|+.+...-.. 
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~~  178 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLL--GIRHVVLAVNKMDLVDYDQEVFD  178 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHh--CCCeEEEEEEecccccchhHHHH
Confidence            3446779999999887655555678999999999997765322221 12222221  2367999999999864221111 


Q ss_pred             ---HHHHHHHhhcC---cEEEEecCCCCCCHHH
Q psy15725        307 ---EEGERKAKELN---VMFIETSAKAGYNVKQ  333 (355)
Q Consensus       307 ---~~~~~~~~~~~---~~~~~~SA~~~~gv~~  333 (355)
                         .+...+....+   ++++++||++|.|+++
T Consensus       179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence               11222233334   4799999999999973

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.15  E-value=2.8e-06  Score=68.54  Aligned_cols=24  Identities=38%  Similarity=0.602  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      -.++++|++|||||||+|+|....
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999999854

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01859 MJ1464 MJ1464

Probab=98.13  E-value=5.7e-06  Score=67.27  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=22.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ...+++++|.+|+|||||+|++.+..
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~  125 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRH  125 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998643

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.11  E-value=5e-06  Score=76.26  Aligned_cols=23  Identities=35%  Similarity=0.680  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      .++++|.+|||||||+|+|++..
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhcccc
Confidence            37999999999999999999854

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=3.2e-06  Score=77.38  Aligned_cols=155  Identities=18%  Similarity=0.150  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +.|+-.|+-..|||||+..+++..-                    +...+.....+.++...-..  +..+..+.|+|+|
T Consensus         1 mii~t~GhidHgkT~L~~altg~~~--------------------d~l~EekKRG~TiDlg~~y~--~~~d~~~~fIDvp   58 (447)
T COG3276           1 MIIGTAGHIDHGKTTLLKALTGGVT--------------------DRLPEEKKRGITIDLGFYYR--KLEDGVMGFIDVP   58 (447)
T ss_pred             CeEEEeeeeeccchhhhhhhccccc--------------------ccchhhhhcCceEeeeeEec--cCCCCceEEeeCC
Confidence            3578899999999999999988432                    22333333333333333332  2333489999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcc---hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++++-..+-..+...|.+++|+|.++.-   +-+.+.- ++.                                     
T Consensus        59 gh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~i-Ldl-------------------------------------  100 (447)
T COG3276          59 GHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLI-LDL-------------------------------------  100 (447)
T ss_pred             CcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHH-HHh-------------------------------------
Confidence            99999888888888999999999997633   3333211 111                                     


Q ss_pred             ccccccccCCCccEE-EEEeecCCCCcccceeh--hhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCC
Q psy15725        171 WIDDVRTERGSDVII-MLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTA  238 (355)
Q Consensus       171 ~~~~~~~~~~~~~pi-ilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~  238 (355)
                                -+++- ++|.+|+|..++..+..  .+..+.......+++.+|+.++.+++++...+.+.+
T Consensus       101 ----------lgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         101 ----------LGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             ----------cCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence                      14444 89999999876532221  111111122245778889999998887665555444

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.08  E-value=1.1e-05  Score=64.39  Aligned_cols=76  Identities=20%  Similarity=0.209  Sum_probs=51.3

Q ss_pred             ccccCCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQ--TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK  326 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~  326 (355)
                      ..+..+|++++|+|++++.+..+  +.+++...    ..++|+++|+||+|+.++..+  .......+..+..++++||+
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~~--~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQR--KAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHHH--HHHHHHHHhcCCeEEEEEec
Confidence            34678999999999988765432  23333322    147899999999998644322  12233444556789999999


Q ss_pred             CCCC
Q psy15725        327 AGYN  330 (355)
Q Consensus       327 ~~~g  330 (355)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            8764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.08  E-value=7.3e-06  Score=67.76  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=23.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSF   38 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~   38 (355)
                      ..++++++|.+|||||||+|++.+..+
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~  140 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKV  140 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            457999999999999999999998553

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.08  E-value=1.6e-05  Score=73.50  Aligned_cols=84  Identities=14%  Similarity=0.174  Sum_probs=61.2

Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh-hcCcEEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-ELNVMFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~SA~~~  328 (355)
                      .++++|.+++|+++........++.++..+..   .++|.++|+||+||.++..   .....+.. ..+.+++++||+++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence            36889999999999755555556666666665   5788899999999974311   11111211 35679999999999


Q ss_pred             CCHHHHHHHHH
Q psy15725        329 YNVKQLFRRVA  339 (355)
Q Consensus       329 ~gv~~l~~~l~  339 (355)
                      .|++++..+|.
T Consensus       183 ~gl~~L~~~L~  193 (356)
T PRK01889        183 EGLDVLAAWLS  193 (356)
T ss_pred             ccHHHHHHHhh
Confidence            99999999885

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.08  E-value=1.4e-05  Score=66.84  Aligned_cols=73  Identities=26%  Similarity=0.602  Sum_probs=66.4

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLS  299 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~  299 (355)
                      +...+.+.+|||+|++.|..+++.++.+++++++|||++++.+++.+ ..|++.+.... .+.|++||+||+|+.
T Consensus        49 ~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~  122 (182)
T cd04172          49 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLR  122 (182)
T ss_pred             CCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhh
Confidence            34568899999999999999999999999999999999999999997 78999987765 689999999999985

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.06  E-value=5e-05  Score=70.00  Aligned_cols=122  Identities=18%  Similarity=0.233  Sum_probs=88.4

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc--
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR--  302 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--  302 (355)
                      ..-+...+.|+||||+..|-......+.-.|++++++|......-+.- -..+....   .+++-|+|.||+|....+  
T Consensus        63 v~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~---~gL~PIVVvNKiDrp~Arp~  138 (603)
T COG1217          63 VNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALA---LGLKPIVVINKIDRPDARPD  138 (603)
T ss_pred             eecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchh-hhHHHHHH---cCCCcEEEEeCCCCCCCCHH
Confidence            344568899999999999999988889999999999999876654431 12233333   578888999999986543  


Q ss_pred             cCCHHHHHHHH------hhcCcEEEEecCCCC----------CCHHHHHHHHHHHcCCCCCCCC
Q psy15725        303 QVSTEEGERKA------KELNVMFIETSAKAG----------YNVKQLFRRVAAALPGMDSTEN  350 (355)
Q Consensus       303 ~v~~~~~~~~~------~~~~~~~~~~SA~~~----------~gv~~l~~~l~~~i~~~~~~~~  350 (355)
                      .+-.+-...+.      .++.+|++..||+.|          .+...||+.|++++|.+.....
T Consensus       139 ~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d  202 (603)
T COG1217         139 EVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLD  202 (603)
T ss_pred             HHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCC
Confidence            22222222221      345689999999965          4788999999999999875433

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.05  E-value=1.1e-05  Score=72.59  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=23.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..++++++|.+|||||||+|++.+..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~  145 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKK  145 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCC
Confidence            45899999999999999999999854

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.05  E-value=8.7e-06  Score=72.72  Aligned_cols=26  Identities=31%  Similarity=0.551  Sum_probs=23.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..++++++|.+|||||||+|++.+..
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~  142 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKK  142 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999999754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=98.05  E-value=6.5e-06  Score=69.31  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=22.4

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..+++++|.+|||||||+|+|.+..
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999999854

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.03  E-value=1.5e-05  Score=71.27  Aligned_cols=91  Identities=23%  Similarity=0.258  Sum_probs=62.9

Q ss_pred             ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725        247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK  326 (355)
Q Consensus       247 ~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~  326 (355)
                      ....+..+|++++|+|++.+.+...  .++....    .++|+++|.||+|+.++...  .......+..+.+++++||+
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~   86 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAK   86 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECC
Confidence            3455778999999999987655332  1222222    36899999999998543221  11112223345689999999


Q ss_pred             CCCCHHHHHHHHHHHcCCC
Q psy15725        327 AGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~~  345 (355)
                      ++.|++++++.|.+.++..
T Consensus        87 ~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        87 KGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CcccHHHHHHHHHHHHHHh
Confidence            9999999999999888654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0467|consensus

Probab=98.03  E-value=2e-05  Score=76.50  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=76.4

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ....-+|+++.+-..|||||...|+..+-  ...+.+.|+-.|+    . ...+  ..+.|++-....+.+-.+++.+++
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asng--vis~rlagkirfl----d-~red--eq~rgitmkss~is~~~~~~~~nl   76 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNG--VISSRLAGKIRFL----D-TRED--EQTRGITMKSSAISLLHKDYLINL   76 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhcc--Eechhhccceeec----c-ccch--hhhhceeeeccccccccCceEEEE
Confidence            34457899999999999999999988552  2233333333332    1 1111  224455555555556567789999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      +|+||+-+|........+-+|++++.+|+...-..+
T Consensus        77 idspghvdf~sevssas~l~d~alvlvdvvegv~~q  112 (887)
T KOG0467|consen   77 IDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQ  112 (887)
T ss_pred             ecCCCccchhhhhhhhhhhcCCcEEEEeeccccchh
Confidence            999999999999999999999999999998854333

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.02  E-value=9.7e-05  Score=65.65  Aligned_cols=94  Identities=16%  Similarity=0.056  Sum_probs=54.6

Q ss_pred             EEEEEEeCCCccccccc-c-----------cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725        230 VRLQLWDTAGQERFRSL-I-----------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD  297 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~-~-----------~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D  297 (355)
                      +-+.++||+|....... .           ...-...+.+++|+|.+..  .+.+. +.....+..   -+.-+++||.|
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~~~g~IlTKlD  228 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---GLTGIILTKLD  228 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---CCCEEEEEccC
Confidence            45668899985432211 0           1112347889999998643  22332 223332211   24689999999


Q ss_pred             CCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHH
Q psy15725        298 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF  335 (355)
Q Consensus       298 l~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~  335 (355)
                      ...  ..  ..+.......+.|+.+++  +|++++++-
T Consensus       229 e~~--~~--G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       229 GTA--KG--GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCC--Cc--cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            632  22  233444455678999988  888887763

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0085|consensus

Probab=98.02  E-value=1e-07  Score=79.48  Aligned_cols=120  Identities=16%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhc-CCCceEEEEeeC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDVRTER-GSDVIIMLVGNK  295 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK  295 (355)
                      ..++.+.+.|.+|+...+..|-+++.+...++|.+.++          +.+.+++-...+.-+..+. ..+.++|+.+||
T Consensus       196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK  275 (359)
T KOG0085|consen  196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK  275 (359)
T ss_pred             hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence            45667789999999999999999999988888876553          3445555555666665544 378999999999


Q ss_pred             CCCCCcc----------------cCCHHHHHHHHhh----cC------cEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        296 TDLSDKR----------------QVSTEEGERKAKE----LN------VMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       296 ~Dl~~~~----------------~v~~~~~~~~~~~----~~------~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      .|+.++.                +...+-++++.-.    .+      +.-.+++|..-+||.-+|.++.+.|...+
T Consensus       276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            9985321                1222333333211    11      35679999999999999999988876543

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.00  E-value=5.5e-05  Score=67.42  Aligned_cols=104  Identities=20%  Similarity=0.260  Sum_probs=74.8

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCccc
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQ  303 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~  303 (355)
                      ...++-.+.|.||||+++|-..+-.-...|+++|+++|.....-  +...-+..+...  .+++ +++..||.||.+.++
T Consensus        81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl--~QTrRHs~I~sL--LGIrhvvvAVNKmDLvdy~e  156 (431)
T COG2895          81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL--EQTRRHSFIASL--LGIRHVVVAVNKMDLVDYSE  156 (431)
T ss_pred             cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH--HHhHHHHHHHHH--hCCcEEEEEEeeecccccCH
Confidence            34456678899999999999888888899999999999865432  222333334433  3444 999999999986543


Q ss_pred             CC----HHHHHHHHhhcC---cEEEEecCCCCCCHH
Q psy15725        304 VS----TEEGERKAKELN---VMFIETSAKAGYNVK  332 (355)
Q Consensus       304 v~----~~~~~~~~~~~~---~~~~~~SA~~~~gv~  332 (355)
                      -.    ..+...++.+++   ..++++||..|.||-
T Consensus       157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            22    233455677777   379999999999984

>KOG0070|consensus

Probab=97.99  E-value=2.1e-05  Score=63.73  Aligned_cols=159  Identities=18%  Similarity=0.323  Sum_probs=117.3

Q ss_pred             cCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccc-----eEEEEEEeCCCccccccccccccc
Q psy15725        178 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK-----QVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       178 ~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~-----~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                      .......++++|    ++.+.+.+-.......     .++.+....|.|++     ++.+.+||.+|++.++.+|..|+.
T Consensus        13 ~~~~e~~IlmlG----LD~AGKTTILykLk~~-----E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~   83 (181)
T KOG0070|consen   13 FGKKEMRILMVG----LDAAGKTTILYKLKLG-----EIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQ   83 (181)
T ss_pred             cCcceEEEEEEe----ccCCCceeeeEeeccC-----CcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhcc
Confidence            345678889998    4333332211111111     12222444455554     457889999999999999999999


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCc---ccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                      +.+++|||+|++|...+.+..+.+..+..... .+.|+++.+||.|+...   .+++........+...|.+..|||.+|
T Consensus        84 ~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G  163 (181)
T KOG0070|consen   84 NTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISG  163 (181)
T ss_pred             CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccc
Confidence            99999999999999999998887777766553 68999999999998633   334444444445556789999999999


Q ss_pred             CCHHHHHHHHHHHcCCC
Q psy15725        329 YNVKQLFRRVAAALPGM  345 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~  345 (355)
                      .|+.|.++||.+.+.+.
T Consensus       164 ~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  164 EGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ccHHHHHHHHHHHHhcc
Confidence            99999999999988764

>KOG0410|consensus

Probab=97.97  E-value=8.2e-06  Score=71.71  Aligned_cols=99  Identities=19%  Similarity=0.258  Sum_probs=60.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.--|+|||..|+|||||+++|+.....+.                 +.+-.+.+||.      +..+++.+ ..+.+.|
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~-----------------drLFATLDpT~------h~a~Lpsg-~~vlltD  232 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPN-----------------DRLFATLDPTL------HSAHLPSG-NFVLLTD  232 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCcc-----------------chhheeccchh------hhccCCCC-cEEEEee
Confidence            445699999999999999999997443222                 11122223332      22233332 2467788


Q ss_pred             cCCc-cc--------ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQ-ER--------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~-~~--------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |-|- +.        |.... .....+|.++.|+|+++|+.=++...-+.-+.
T Consensus       233 TvGFisdLP~~LvaAF~ATL-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~  284 (410)
T KOG0410|consen  233 TVGFISDLPIQLVAAFQATL-EEVAEADLLLHVVDISHPNAEEQRETVLHVLN  284 (410)
T ss_pred             chhhhhhCcHHHHHHHHHHH-HHHhhcceEEEEeecCCccHHHHHHHHHHHHH
Confidence            8873 22        22222 23568999999999999876555544444443

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.97  E-value=0.00023  Score=64.58  Aligned_cols=94  Identities=16%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             eEEEEEEeCCCccccc--------ccc---cc-cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q psy15725        229 QVRLQLWDTAGQERFR--------SLI---PS-YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT  296 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~--------~~~---~~-~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  296 (355)
                      .+-+.++||+|.....        .+.   .. .-...+.+++|+|++...  ..+.+ .....+   .--+.-+|.||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~---~~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHE---AVGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHh---hCCCCEEEEECC
Confidence            3456688888853321        111   11 112356788999988542  23322 122221   123567999999


Q ss_pred             CCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725        297 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       297 Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l  334 (355)
                      |.. . ..  ..........+.|+.+++  +|++++++
T Consensus       270 D~t-~-~~--G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        270 DGT-A-KG--GVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CCC-C-Cc--cHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            943 2 22  233445566688999999  88888776

>cd04131 Rnd Rnd subfamily

Probab=97.96  E-value=3.9e-05  Score=63.87  Aligned_cols=73  Identities=27%  Similarity=0.595  Sum_probs=66.1

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ...+.+.+|||+|++.|..+++.++.+++++++|||++++.+++++ ..|+..+.... .+.|+++|+||+|+.+
T Consensus        46 ~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~  119 (178)
T cd04131          46 EQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRT  119 (178)
T ss_pred             CEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhc
Confidence            3568899999999999999999999999999999999999999995 78999988765 6899999999999853

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK13796 GTPase YqeH; Provisional

Probab=97.95  E-value=3.7e-05  Score=71.41  Aligned_cols=82  Identities=29%  Similarity=0.424  Sum_probs=56.6

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH----HHHhhcCc---EEEEecCC
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAKELNV---MFIETSAK  326 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~~~~~---~~~~~SA~  326 (355)
                      ...+++|+|+.+...     .|...+.+.. .+.|+++|+||+|+... ........    .+.+..++   .++++||+
T Consensus        70 ~~lIv~VVD~~D~~~-----s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk  142 (365)
T PRK13796         70 DALVVNVVDIFDFNG-----SWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVVLISAQ  142 (365)
T ss_pred             CcEEEEEEECccCCC-----chhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEEEEECC
Confidence            348999999877542     2444444433 37899999999999642 22222222    23444554   68999999


Q ss_pred             CCCCHHHHHHHHHHHc
Q psy15725        327 AGYNVKQLFRRVAAAL  342 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i  342 (355)
                      ++.|++++++.|.+..
T Consensus       143 ~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        143 KGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999998764

>KOG1954|consensus

Probab=97.95  E-value=4.4e-05  Score=68.35  Aligned_cols=27  Identities=22%  Similarity=0.502  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNT   41 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~   41 (355)
                      =|+++|.-..||||+++-|+.+.|++.
T Consensus        60 mill~GqyStGKTtfi~yLle~dypg~   86 (532)
T KOG1954|consen   60 MILLVGQYSTGKTTFIRYLLEQDYPGL   86 (532)
T ss_pred             eEEEEeccccchhHHHHHHHhCCCCcc
Confidence            489999999999999999999998764

>cd01875 RhoG RhoG subfamily

Probab=97.95  E-value=3.1e-05  Score=65.20  Aligned_cols=73  Identities=34%  Similarity=0.616  Sum_probs=65.3

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ...+.+.+||++|++.|+.+++.++.+++++|+|||++++.+++.+. .|...+.... .++|+++|+||.|+.+
T Consensus        48 ~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~  121 (191)
T cd01875          48 GRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRN  121 (191)
T ss_pred             CEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhc
Confidence            35688999999999999999999999999999999999999999996 5888876654 6899999999999954

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.95  E-value=2.3e-05  Score=70.37  Aligned_cols=72  Identities=21%  Similarity=0.293  Sum_probs=52.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      .-.++|+++|+.|.|||||+|.|++.......              ....... ...+++.+......+.-++....+.+
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~--------------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~v   86 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDET--------------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTV   86 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCC--------------CccCcccccCCcceEEEeeeeeeecCCeEEEEEE
Confidence            45689999999999999999999997433221              0011222 24577777777777777788889999


Q ss_pred             EecCCcc
Q psy15725         90 WDTAGQE   96 (355)
Q Consensus        90 ~D~~g~~   96 (355)
                      +||||-.
T Consensus        87 IDtpGfG   93 (373)
T COG5019          87 IDTPGFG   93 (373)
T ss_pred             eccCCcc
Confidence            9999953

>cd04168 TetM_like Tet(M)-like subfamily

Probab=97.94  E-value=4.5e-05  Score=66.47  Aligned_cols=69  Identities=17%  Similarity=0.197  Sum_probs=55.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      +...+.++||+|+..|...+..++..+|++++|+|.++....+ ...+...+..   .++|+++++||+|+..
T Consensus        62 ~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~---~~~P~iivvNK~D~~~  130 (237)
T cd04168          62 EDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK---LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             CCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH---cCCCEEEEEECccccC
Confidence            4568899999999998888888999999999999998876532 2344444443   5799999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1547|consensus

Probab=97.92  E-value=2.3e-05  Score=66.02  Aligned_cols=68  Identities=18%  Similarity=0.353  Sum_probs=49.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      .++|+|||.+|.|||||+|.++..+......               ..... .+..|+.+....+.+.-++-.+++.++|
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~---------------~~~~~~p~pkT~eik~~thvieE~gVklkltviD  110 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSS---------------SDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVID  110 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccC---------------CCcccCcccceEEEEeeeeeeeecceEEEEEEec
Confidence            5899999999999999999998865432200               11111 3344666666677777777788999999


Q ss_pred             cCCc
Q psy15725         92 TAGQ   95 (355)
Q Consensus        92 ~~g~   95 (355)
                      |||-
T Consensus       111 TPGf  114 (336)
T KOG1547|consen  111 TPGF  114 (336)
T ss_pred             CCCc
Confidence            9995

>KOG2655|consensus

Probab=97.91  E-value=2.7e-05  Score=70.48  Aligned_cols=71  Identities=18%  Similarity=0.326  Sum_probs=49.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      -.++++++|++|.|||||+|.|+...+.+....              .........|..+......+.-++..+.+.++|
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~--------------~~~~~~~~~t~~i~~~~~~iee~g~~l~Ltvid   85 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREV--------------PGASERIKETVEIESTKVEIEENGVKLNLTVID   85 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCccc--------------CCcccCccccceeeeeeeeecCCCeEEeeEEec
Confidence            349999999999999999999998754332100              011222334666666666666677788999999


Q ss_pred             cCCcc
Q psy15725         92 TAGQE   96 (355)
Q Consensus        92 ~~g~~   96 (355)
                      |||-.
T Consensus        86 tPGfG   90 (366)
T KOG2655|consen   86 TPGFG   90 (366)
T ss_pred             cCCCc
Confidence            99953

>KOG0088|consensus

Probab=97.91  E-value=1.3e-05  Score=62.77  Aligned_cols=53  Identities=47%  Similarity=0.884  Sum_probs=49.7

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  280 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~  280 (355)
                      ....+.||||+|++.|..+-+-||.+++++++|||++|..+|+.+..|..++.
T Consensus        60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr  112 (218)
T KOG0088|consen   60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELR  112 (218)
T ss_pred             ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999999999998874

>KOG2486|consensus

Probab=97.91  E-value=2.7e-05  Score=67.24  Aligned_cols=27  Identities=30%  Similarity=0.506  Sum_probs=23.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      -.+..++++|..|||||+|||-++.-+
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k  160 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVK  160 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhh
Confidence            456899999999999999999998843

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.89  E-value=3.7e-05  Score=69.11  Aligned_cols=90  Identities=21%  Similarity=0.221  Sum_probs=62.6

Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                      ...+..+|++++|+|...+.+...  .++....    .++|+++|+||+|+.+....  .....+.+..+.+++++||++
T Consensus        19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~vSa~~   90 (287)
T PRK09563         19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEVT--KKWIEYFEEQGIKALAINAKK   90 (287)
T ss_pred             HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHHH--HHHHHHHHHcCCeEEEEECCC
Confidence            455778999999999987765332  2222222    26899999999998543211  111222234457899999999


Q ss_pred             CCCHHHHHHHHHHHcCCC
Q psy15725        328 GYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~  345 (355)
                      +.|++++++.|...++..
T Consensus        91 ~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         91 GQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cccHHHHHHHHHHHHHHH
Confidence            999999999998887654

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.88  E-value=2.2e-05  Score=71.48  Aligned_cols=28  Identities=32%  Similarity=0.541  Sum_probs=24.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSF   38 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~   38 (355)
                      ...++++|||-||||||||+|+|.+...
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~  157 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKV  157 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccc
Confidence            3458899999999999999999999653

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.87  E-value=3.6e-05  Score=68.39  Aligned_cols=97  Identities=19%  Similarity=0.156  Sum_probs=64.2

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC-CH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV-ST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v-~~  306 (355)
                      ....+.++||||...+...+...+..+|++++|+|..+...-+. ......+..   .++|++++.||+|+...+.- ..
T Consensus        62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~a~~~~~~  137 (270)
T cd01886          62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTGADFFRVV  137 (270)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHH
Confidence            35678899999998888888889999999999999987654332 233333333   57999999999998643210 01


Q ss_pred             HHHHHHHhhcCc-EEEEecCCCC
Q psy15725        307 EEGERKAKELNV-MFIETSAKAG  328 (355)
Q Consensus       307 ~~~~~~~~~~~~-~~~~~SA~~~  328 (355)
                      .+........-+ .++++||..+
T Consensus       138 ~~l~~~l~~~~~~~~~Pisa~~~  160 (270)
T cd01886         138 EQIREKLGANPVPLQLPIGEEDD  160 (270)
T ss_pred             HHHHHHhCCCceEEEeccccCCC
Confidence            111111111112 5788898754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0463|consensus

Probab=97.87  E-value=0.00035  Score=62.84  Aligned_cols=108  Identities=17%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceee-----------eecccceeeecc-----cCCCCCccccccceeee
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT-----------IVGKTSLITRFM-----YDSFDNTYQATIGIDFL   74 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~-----~~~~~~~~~~t~~~~~~   74 (355)
                      .-.++|+|||.-.+|||||+--|+.+..+..--.+           -.|.|+.+.--.     .+...+.++|. +....
T Consensus       131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~H-g~~Ld  209 (641)
T KOG0463|consen  131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPH-GHNLD  209 (641)
T ss_pred             ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCC-CCccc
Confidence            45689999999999999999888876654421111           012222211100     11122222222 21222


Q ss_pred             eeeeeecCcEEEEEEEecCCccccccccccccc--CccEEEEEEECCC
Q psy15725         75 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSTVAVVVYDITN  120 (355)
Q Consensus        75 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~  120 (355)
                      ...+ .....-.+.|+|+.|+++|-....-.+-  -.|.-++++-++-
T Consensus       210 WvkI-ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa  256 (641)
T KOG0463|consen  210 WVKI-CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA  256 (641)
T ss_pred             ceee-ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc
Confidence            1111 1222345789999999988765543332  3466677766543

>KOG0093|consensus

Probab=97.87  E-value=2e-05  Score=61.05  Aligned_cols=56  Identities=41%  Similarity=0.866  Sum_probs=51.2

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  280 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~  280 (355)
                      .+...+.++||||.|++.|+.+.-.++++++++|++||+++.+++..+..|...+.
T Consensus        65 r~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIk  120 (193)
T KOG0093|consen   65 RSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIK  120 (193)
T ss_pred             ecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHhe
Confidence            44567999999999999999999999999999999999999999999988887764

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.86  E-value=7.9e-05  Score=64.35  Aligned_cols=90  Identities=24%  Similarity=0.204  Sum_probs=53.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhc--CCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYD--SFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      .+-.-|+|+|++++|||+|+|++++.  .+.-.                    .....-|.|+-.+...... +....+.
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~--------------------~~~~~~T~gi~~~~~~~~~-~~~~~v~   63 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM--------------------DTSQQTTKGIWMWSVPFKL-GKEHAVL   63 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEec--------------------CCCCCCccceEEEeccccC-CCcceEE
Confidence            35567999999999999999999995  22111                    1111223333322222211 2456899


Q ss_pred             EEecCCcccccc------cccccccC--ccEEEEEEECCCc
Q psy15725         89 LWDTAGQERFRS------LIPSYIRD--STVAVVVYDITNA  121 (355)
Q Consensus        89 i~D~~g~~~~~~------~~~~~~~~--~d~ii~v~d~~~~  121 (355)
                      ++||+|......      .....+..  +|.+|+..+....
T Consensus        64 ~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          64 LLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             EEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCccc
Confidence            999999754322      11222333  7888888777654

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR00092 GTP-binding protein YchF

Probab=97.86  E-value=3.7e-05  Score=70.44  Aligned_cols=89  Identities=17%  Similarity=0.093  Sum_probs=52.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCC-CC-CceeeeecccceeeecccCCCCCccccccceeeeee--------eeee-cC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSF-DN-TYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSK--------TMYL-ED   82 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--------~~~~-~~   82 (355)
                      +++.+||.|+||||||+|.+++... .. .|+.+                  +..|..|.-....        .+.. .-
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypft------------------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~   64 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFT------------------TIEPNAGVVNPSDPRLDLLAIYIKPEKV   64 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCC------------------CCCCceeEEEechhHHHHHHHHhCCcCc
Confidence            6899999999999999999998764 21 22111                  0111111111000        0000 01


Q ss_pred             cEEEEEEEecCCccc-------ccccccccccCccEEEEEEECCC
Q psy15725         83 RTVRLQLWDTAGQER-------FRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      ....+.+.|.||...       .....-..++.+|+++.|+++.+
T Consensus        65 ~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        65 PPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             CCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence            224678999999633       11223345789999999999864

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd04133 Rop_like Rop subfamily

Probab=97.86  E-value=3.6e-05  Score=63.89  Aligned_cols=72  Identities=39%  Similarity=0.696  Sum_probs=65.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ..+.+.|||++|++.|..+++.++.+++++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+
T Consensus        47 ~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~  119 (176)
T cd04133          47 NTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRD  119 (176)
T ss_pred             EEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhcc
Confidence            568899999999999999999999999999999999999999998 68999987655 5899999999999954

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04120 Rab12 Rab12 subfamily

Probab=97.85  E-value=3.1e-05  Score=65.78  Aligned_cols=51  Identities=47%  Similarity=0.920  Sum_probs=47.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      ..+.+.+||++|++.|+.+++.++.+++++++|||+++..+++.+..|+..
T Consensus        47 ~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~   97 (202)
T cd04120          47 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM   97 (202)
T ss_pred             EEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999998888654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.85  E-value=5.1e-05  Score=60.27  Aligned_cols=112  Identities=49%  Similarity=0.789  Sum_probs=86.8

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI-DDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ...+.+||++|...+...+...+..++++++|+|++++.+......|. ..+......++|+++++||+|+.........
T Consensus        44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~  123 (157)
T cd00882          44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEE  123 (157)
T ss_pred             EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHH
Confidence            567889999998888887788889999999999999998888877663 2222333378999999999998654433322


Q ss_pred             H-HHHHHhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        308 E-GERKAKELNVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       308 ~-~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      . .........++++++||.++.|+++++++|.+
T Consensus       124 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882         124 ELAEQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             HHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            2 23344455689999999999999999999863

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04121 Rab40 Rab40 subfamily

Probab=97.85  E-value=3.8e-05  Score=64.56  Aligned_cols=53  Identities=45%  Similarity=0.850  Sum_probs=48.4

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+.+.+||++|++.|..++..++.+++++++|||++++.+++.+..|++.+
T Consensus        52 ~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i  104 (189)
T cd04121          52 GRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI  104 (189)
T ss_pred             CEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999998887665

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PRK09866 hypothetical protein; Provisional

Probab=97.84  E-value=4.5e-05  Score=73.80  Aligned_cols=106  Identities=18%  Similarity=0.254  Sum_probs=66.3

Q ss_pred             EEEEEEecCCcccc-----cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         85 VRLQLWDTAGQERF-----RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        85 ~~~~i~D~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      .++.++||||...-     ...+...+..+|+|+||+|..+..+... ....+.++..                      
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~----------------------  286 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV----------------------  286 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc----------------------
Confidence            47899999997432     2234457889999999999987544433 1223333321                      


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh------cc-CeEEEEeeeeeccccceEEE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK------EL-NVMFIETSAKAGYNVKQVRL  232 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~------~~-~~~~~~~sa~~~~~v~~i~~  232 (355)
                                          ....|+++|+||+|..+...-..+....+..      .. ...++.+|+..+.+++.+..
T Consensus       287 --------------------~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLd  346 (741)
T PRK09866        287 --------------------GQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARH  346 (741)
T ss_pred             --------------------CCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHH
Confidence                                1136999999999985422211222333221      11 34689999999999887543


Q ss_pred             E
Q psy15725        233 Q  233 (355)
Q Consensus       233 ~  233 (355)
                      .
T Consensus       347 e  347 (741)
T PRK09866        347 E  347 (741)
T ss_pred             H
Confidence            3

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.83  E-value=5.1e-05  Score=64.32  Aligned_cols=116  Identities=30%  Similarity=0.556  Sum_probs=101.8

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ...+.+.|||++|++.|..++..++.+++++++|||+++..+++.+..|+..+.... .++|+++|+||+|+.. +.+..
T Consensus        41 ~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~  118 (200)
T smart00176       41 RGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKA  118 (200)
T ss_pred             CEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCH
Confidence            356889999999999999999999999999999999999999999999999998765 6899999999999853 34444


Q ss_pred             HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +. ..+++..++++++|||++|.||+++|++|++.+.+.
T Consensus       119 ~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      119 KS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            33 466777889999999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.83  E-value=4e-05  Score=62.21  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=23.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ...+++++|.+|||||||+|++.+..
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~  124 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKL  124 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccc
Confidence            45789999999999999999999854

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.83  E-value=0.00018  Score=60.70  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -|++||+.||||||.+-++..
T Consensus         3 vi~lvGptGvGKTTt~aKLAa   23 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAA   23 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCchHhHHHHHHH
Confidence            589999999999999999876

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd04169 RF3 RF3 subfamily

Probab=97.82  E-value=9.2e-05  Score=65.70  Aligned_cols=70  Identities=23%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ..+.+.+|||+|+..|.......+..+|++++|+|+++...... ..+......   .++|++++.||+|+...
T Consensus        69 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          69 RDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHHh---cCCCEEEEEECCccCCC
Confidence            46788999999998887766667889999999999987644222 233333322   58999999999998543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.80  E-value=3e-05  Score=68.48  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      ..+++|++|||||||+|+|...
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~  187 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPE  187 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCch
Confidence            5789999999999999999873

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=97.80  E-value=2.5e-05  Score=64.47  Aligned_cols=154  Identities=19%  Similarity=0.205  Sum_probs=95.0

Q ss_pred             EEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCcc
Q psy15725         18 FLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   96 (355)
Q Consensus        18 vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~   96 (355)
                      ++|++|||||||++++.+.... ..+                      ...|.....  ....++. ...+.+|||||..
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~----------------------~~~t~~~~~--~~~~~~~-~~~~~i~DtpG~~   55 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANY----------------------PFTTLEPNL--GVVEVPD-GARIQVADIPGLI   55 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCC----------------------CceeecCcc--eEEEcCC-CCeEEEEeccccc
Confidence            5899999999999999985430 110                      011111111  1122220 3568999999973


Q ss_pred             c----ccccc---cccccCccEEEEEEECCCc------chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         97 R----FRSLI---PSYIRDSTVAVVVYDITNA------NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        97 ~----~~~~~---~~~~~~~d~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      +    .+.+.   ...++.+|++++|+|+++.      .+++....|...+........                     
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  114 (176)
T cd01881          56 EGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI---------------------  114 (176)
T ss_pred             hhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhH---------------------
Confidence            2    22222   2346789999999999998      577777777777753210000                     


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                                   .....+.|+++|+||+|+.....................++.+|+..+.+++.+
T Consensus       115 -------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l  168 (176)
T cd01881         115 -------------LGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDEL  168 (176)
T ss_pred             -------------HHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHH
Confidence                         000137999999999999655443332222333445567899999988877653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK14974 cell division protein FtsY; Provisional

Probab=97.76  E-value=0.00026  Score=64.59  Aligned_cols=93  Identities=16%  Similarity=0.137  Sum_probs=52.4

Q ss_pred             EEEEEeCCCcccccc-cccc---c--ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725        231 RLQLWDTAGQERFRS-LIPS---Y--IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV  304 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~-~~~~---~--~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v  304 (355)
                      .+.++||+|...... +...   .  ....+.+++|.|.....   +...........   --+--+++||.|..  ...
T Consensus       224 DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~---~~~~giIlTKlD~~--~~~  295 (336)
T PRK14974        224 DVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA---VGIDGVILTKVDAD--AKG  295 (336)
T ss_pred             CEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc---CCCCEEEEeeecCC--CCc
Confidence            366888888543211 1110   0  12456788999886543   222222222221   12467899999963  222


Q ss_pred             CHHHHHHHHhhcCcEEEEecCCCCCCHHHHH
Q psy15725        305 STEEGERKAKELNVMFIETSAKAGYNVKQLF  335 (355)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~  335 (355)
                      .  -+...+...+.|+.+++  +|++++++.
T Consensus       296 G--~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        296 G--AALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             c--HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence            2  33444455678999988  799998774

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=7.9e-05  Score=67.99  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=73.7

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc---cHHH--HHHHHHHHHhhcCCCce-EEEEeeCCCC
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQ--TSKWIDDVRTERGSDVI-IMLVGNKTDL  298 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~---s~~~--~~~~~~~i~~~~~~~~p-iilv~nK~Dl  298 (355)
                      ...+.+.++|+|+||+..|.......+..+|..|+|+|+++.+   .+..  ....+-.+...  .++. +|++.||.|+
T Consensus        80 fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~  157 (428)
T COG5256          80 FETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDL  157 (428)
T ss_pred             eecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEcccc
Confidence            4456778999999999999988888899999999999998774   2111  12233334444  3444 8999999999


Q ss_pred             CCcccCCHHHHH----HHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725        299 SDKRQVSTEEGE----RKAKELN-----VMFIETSAKAGYNVKQ  333 (355)
Q Consensus       299 ~~~~~v~~~~~~----~~~~~~~-----~~~~~~SA~~~~gv~~  333 (355)
                      .+-++-+.++..    .+.+..|     ++++++||.+|.|+.+
T Consensus       158 v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         158 VSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            753322222221    1334444     5699999999999864

>PRK13796 GTPase YqeH; Provisional

Probab=97.74  E-value=4.7e-05  Score=70.67  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..++++||.+|||||||+|+|+...
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~  184 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEI  184 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhc
Confidence            3479999999999999999998743

>CHL00189 infB translation initiation factor 2; Provisional

Probab=97.72  E-value=8.6e-05  Score=74.26  Aligned_cols=111  Identities=16%  Similarity=0.265  Sum_probs=80.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc--cCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR--QVS  305 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~v~  305 (355)
                      ....+.+|||||++.|..++...+..+|++++|+|+++....+....+ ..+.   ..++|+++++||+|+....  .+.
T Consensus       293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~~e~v~  368 (742)
T CHL00189        293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANANTERIK  368 (742)
T ss_pred             CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCccccCHHHHH
Confidence            357889999999999999999999999999999999886544333222 2222   2589999999999986422  111


Q ss_pred             HHHHH--HHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        306 TEEGE--RKAKELN--VMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       306 ~~~~~--~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      .+...  .+...++  ++++++||++|.||+++|++|....
T Consensus       369 ~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        369 QQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             HHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            11100  0112223  6999999999999999999998865

>COG1084 Predicted GTPase [General function prediction only]

Probab=97.72  E-value=0.00012  Score=64.88  Aligned_cols=128  Identities=20%  Similarity=0.236  Sum_probs=83.2

Q ss_pred             EEEEeeeeecccc-ceEEEEEEeCCCc-----ccc----cccccccccCCcEEEEEEeCCCcc--cHHHHHHHHHHHHhh
Q psy15725        215 MFIETSAKAGYNV-KQVRLQLWDTAGQ-----ERF----RSLIPSYIRDSTVAVVVYDITNAN--SFHQTSKWIDDVRTE  282 (355)
Q Consensus       215 ~~~~~sa~~~~~v-~~i~~~i~D~~g~-----~~~----~~~~~~~~~~~~~vi~v~d~~~~~--s~~~~~~~~~~i~~~  282 (355)
                      ||..-+...|.-. .....+++||||-     ++.    +.-+-.+..-.++|+|.||.+...  +.+.....++++...
T Consensus       199 PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~  278 (346)
T COG1084         199 PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL  278 (346)
T ss_pred             CccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence            4444444433332 3447899999991     111    111222334577899999987655  666667778888776


Q ss_pred             cCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        283 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       283 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      -  ..|+++|.||.|+...+......+. +....+.....+|+..+.+++.+-+.+.......
T Consensus       279 f--~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         279 F--KAPIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             c--CCCeEEEEecccccchhHHHHHHHH-HHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence            4  4899999999998755554333332 2223334578899999999999998888875443

>KOG1491|consensus

Probab=97.71  E-value=9.2e-05  Score=65.72  Aligned_cols=103  Identities=16%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCC-CceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVR   86 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~   86 (355)
                      ......+|.+||.|+||||||+|.++...... .|+-+.. ..+..+.-+         |.-.++.....+... .....
T Consensus        16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TI-dPn~a~V~v---------~d~Rfd~l~~~Y~~~~~vpa~   85 (391)
T KOG1491|consen   16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTI-DPNEARVEV---------PDSRFDLLCPIYGPKSKVPAF   85 (391)
T ss_pred             CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCccee-ccccceeec---------CchHHHHHHHhcCCcceeeee
Confidence            34456899999999999999999999976432 2221110 000000000         000011111111111 12467


Q ss_pred             EEEEecCCccc----ccccc---cccccCccEEEEEEECCCc
Q psy15725         87 LQLWDTAGQER----FRSLI---PSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        87 ~~i~D~~g~~~----~~~~~---~~~~~~~d~ii~v~d~~~~  121 (355)
                      +.++|++|.-.    =..+-   -..+|.+|+++-|+++...
T Consensus        86 l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d  127 (391)
T KOG1491|consen   86 LTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFED  127 (391)
T ss_pred             EEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCc
Confidence            89999988521    12222   2346789999999988653

>PTZ00099 rab6; Provisional

Probab=97.71  E-value=8.7e-05  Score=61.61  Aligned_cols=121  Identities=69%  Similarity=1.044  Sum_probs=109.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.|||++|++.+..++..++.+++++++|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...
T Consensus        27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~  106 (176)
T PTZ00099         27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYE  106 (176)
T ss_pred             EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHH
Confidence            56889999999999999999999999999999999999999999999999987655467999999999999766778888


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      ++..+++..++.+++|||++|.||+++|++|++.++...++
T Consensus       107 e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099        107 EGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            88888888888999999999999999999999999876544

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.71  E-value=3.6e-05  Score=69.07  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=60.3

Q ss_pred             ccccCccEEEEEEECCCcc-hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCc
Q psy15725        104 SYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD  182 (355)
Q Consensus       104 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (355)
                      ..+.++|.+++|+|+.++. ++..+..|+..+..                                            .+
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--------------------------------------------~~  109 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--------------------------------------------AG  109 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--------------------------------------------cC
Confidence            3478999999999999987 88888888877653                                            27


Q ss_pred             cEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       183 ~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      +|+++|+||+|+.++..  ...........+.+++.+|+.++.+++.+.
T Consensus       110 ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~  156 (287)
T cd01854         110 IEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTGEGLDELR  156 (287)
T ss_pred             CCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence            89999999999965421  111122233467788999999988876543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.70  E-value=5.9e-05  Score=69.32  Aligned_cols=86  Identities=14%  Similarity=0.217  Sum_probs=59.8

Q ss_pred             ccccccccCccEEEEEEECCCcc-hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccccccc
Q psy15725        100 SLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE  178 (355)
Q Consensus       100 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (355)
                      .+....+.++|.+++|+|+.++. .+..+..|+..+..                                          
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~------------------------------------------  118 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES------------------------------------------  118 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH------------------------------------------
Confidence            34455688999999999999865 44456777765532                                          


Q ss_pred             CCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       179 ~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                        .++|+++|+||+|+.++...  ..........+..++.+|+.++.+++.+.
T Consensus       119 --~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iSA~tg~GI~eL~  167 (352)
T PRK12289        119 --TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFISVETGIGLEALL  167 (352)
T ss_pred             --CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEEcCCCCCHHHHh
Confidence              37999999999999643221  11112223556788999999998887654

>KOG0073|consensus

Probab=97.69  E-value=8.7e-05  Score=58.82  Aligned_cols=119  Identities=21%  Similarity=0.314  Sum_probs=97.2

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH-HhhcCCCceEEEEeeCCCCCC---cc
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KR  302 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piilv~nK~Dl~~---~~  302 (355)
                      .+.+.+.+||.+|+..++..|+.||+.+|++|+|||++++..+++....+..+ .+....+.|+++++||.|+..   .+
T Consensus        57 ~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~  136 (185)
T KOG0073|consen   57 YKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLE  136 (185)
T ss_pred             ecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHH
Confidence            34567899999999999999999999999999999999999999987766554 444458999999999999862   22


Q ss_pred             cCCHHHH-HHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        303 QVSTEEG-ERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       303 ~v~~~~~-~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .+..... .++++...|+++-|||.+|+++.+.++||...+.++
T Consensus       137 ~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  137 EISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence            3322222 234467789999999999999999999999988763

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.69  E-value=8.3e-05  Score=64.06  Aligned_cols=73  Identities=23%  Similarity=0.555  Sum_probs=64.3

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ...+.+.+||++|++.|..+++.++.++|++++|||++++.+++.+ ..|...+.... .+.|++||+||+|+..
T Consensus        46 ~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~  119 (222)
T cd04173          46 KRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRT  119 (222)
T ss_pred             CEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECccccc
Confidence            3568899999999999999999999999999999999999999998 46877765544 6899999999999864

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.68  E-value=9.6e-05  Score=64.04  Aligned_cols=73  Identities=29%  Similarity=0.577  Sum_probs=65.6

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLS  299 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~  299 (355)
                      +...+.+.||||+|++.|..+++.++.+++++++|||+++..+++.+ ..|+..+.... .+.|+++|+||+|+.
T Consensus        57 ~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~  130 (232)
T cd04174          57 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLR  130 (232)
T ss_pred             CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccc
Confidence            34568899999999999999999999999999999999999999984 78999987755 578999999999985

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.67  E-value=0.00036  Score=61.78  Aligned_cols=93  Identities=17%  Similarity=0.257  Sum_probs=66.6

Q ss_pred             cccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725        248 PSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK  326 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~  326 (355)
                      +.-..+.+-.++++.+.++. +...+++++-....   .++.-++++||.||.++...............+.+++.+||+
T Consensus        74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~  150 (301)
T COG1162          74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAK  150 (301)
T ss_pred             CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCc
Confidence            33344466667777766665 55556666655555   578888889999998665443333444556788999999999


Q ss_pred             CCCCHHHHHHHHHHHcC
Q psy15725        327 AGYNVKQLFRRVAAALP  343 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~  343 (355)
                      ++.|++++.+++...+-
T Consensus       151 ~~~~~~~l~~~l~~~~s  167 (301)
T COG1162         151 NGDGLEELAELLAGKIT  167 (301)
T ss_pred             CcccHHHHHHHhcCCeE
Confidence            99999999999877654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.67  E-value=4.8e-05  Score=67.75  Aligned_cols=112  Identities=14%  Similarity=0.145  Sum_probs=75.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      +...+.++||+|...+...+...+..+|++++|+|.++.........| ..+..   .++|.+++.||+|+.....  ..
T Consensus        62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~~--~~  135 (268)
T cd04170          62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERADF--DK  135 (268)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCCH--HH
Confidence            356788999999988877778888999999999999887665433333 23333   5799999999999864321  11


Q ss_pred             HHHHHHhhcCcEE--EEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        308 EGERKAKELNVMF--IETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       308 ~~~~~~~~~~~~~--~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      ....+....+.++  +.+...++.|+..+.+.+.......
T Consensus       136 ~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~  175 (268)
T cd04170         136 TLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIY  175 (268)
T ss_pred             HHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEc
Confidence            2223333344433  3455777778777777666555433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.66  E-value=9.6e-05  Score=62.06  Aligned_cols=115  Identities=27%  Similarity=0.367  Sum_probs=83.2

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc--c
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR--Q  303 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~  303 (355)
                      ......+.++|+||+..|.......+..+|++++|+|+.++...+. .+.+..+..   .++|++++.||+|+...+  .
T Consensus        66 ~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~  141 (188)
T PF00009_consen   66 NENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE---LGIPIIVVLNKMDLIEKELEE  141 (188)
T ss_dssp             TESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH---TT-SEEEEEETCTSSHHHHHH
T ss_pred             cccccceeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc---cccceEEeeeeccchhhhHHH
Confidence            3457788999999999988877777889999999999998765433 334444444   589999999999987221  1


Q ss_pred             CCHHHHHHHHhhc------CcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        304 VSTEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       304 v~~~~~~~~~~~~------~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +..+....+.+..      .+|++++||++|.|+++|+++|.+.+|.
T Consensus       142 ~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~  188 (188)
T PF00009_consen  142 IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLPS  188 (188)
T ss_dssp             HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred             HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence            1111121232222      3689999999999999999999999984

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.66  E-value=6e-05  Score=69.90  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      .+++++|.+|||||||+|+++...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~  178 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQN  178 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhc
Confidence            489999999999999999999853

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=97.66  E-value=0.0001  Score=61.54  Aligned_cols=112  Identities=23%  Similarity=0.262  Sum_probs=83.9

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC--H
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--T  306 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~  306 (355)
                      ...+.++|++|...+...+..++..+|++++|+|++++..... ..++..+..   .++|+++++||+|+..+....  .
T Consensus        61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~  136 (189)
T cd00881          61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVL  136 (189)
T ss_pred             CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHH
Confidence            5678899999998888888888999999999999987765432 234444433   589999999999987532211  1


Q ss_pred             HHHHHHHhh--------------cCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        307 EEGERKAKE--------------LNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       307 ~~~~~~~~~--------------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      ....+..+.              ...+++++||++|.|+++++++|.+.++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~  188 (189)
T cd00881         137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP  188 (189)
T ss_pred             HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence            122222222              34689999999999999999999999874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.62  E-value=0.0008  Score=63.49  Aligned_cols=86  Identities=10%  Similarity=0.041  Sum_probs=45.2

Q ss_pred             EEEEEEeCCCcccccc-ccc---c--cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc
Q psy15725        230 VRLQLWDTAGQERFRS-LIP---S--YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~-~~~---~--~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~  303 (355)
                      +-+.|+||+|...... +..   .  ..-..+.+++|+|....   ++..+....+.+.  .+ ..-+|+||.|-...  
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~--~~-i~giIlTKlD~~~r--  255 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEA--LG-LTGVILTKLDGDAR--  255 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhh--CC-CCEEEEeCccCccc--
Confidence            4466889998432211 000   0  01134567899987543   3333333444331  11 24577799995211  


Q ss_pred             CCHHHHHHHHhhcCcEEEEecC
Q psy15725        304 VSTEEGERKAKELNVMFIETSA  325 (355)
Q Consensus       304 v~~~~~~~~~~~~~~~~~~~SA  325 (355)
                        ...+.......++|+.+++.
T Consensus       256 --gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 --GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             --ccHHHHHHHHHCcCEEEEeC
Confidence              22355566667788777665

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.61  E-value=0.00028  Score=57.44  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChhHHHHHhhhcC
Q psy15725         16 LVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ++++|..|+|||||+++++...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~~   24 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTEQ   24 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhcc
Confidence            6799999999999999998753

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.60  E-value=0.00027  Score=59.85  Aligned_cols=110  Identities=15%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             EEEEEeCCCcccccc-----cccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725        231 RLQLWDTAGQERFRS-----LIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV  304 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~-----~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v  304 (355)
                      .+.+||++|......     +....+..+|.++++.+  ++  +... ..+++.+..   .+.|+++|+||+|+..+...
T Consensus        53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~--~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~  125 (197)
T cd04104          53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TR--FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQ  125 (197)
T ss_pred             CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CC--CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhh
Confidence            467899998543211     12223567888888743  22  2233 345666655   37899999999998432110


Q ss_pred             -------CHHHHH----H-H---HhhcC---cEEEEecCC--CCCCHHHHHHHHHHHcCCCCC
Q psy15725        305 -------STEEGE----R-K---AKELN---VMFIETSAK--AGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       305 -------~~~~~~----~-~---~~~~~---~~~~~~SA~--~~~gv~~l~~~l~~~i~~~~~  347 (355)
                             ..++..    + .   ....+   -++|.+|+.  .+.|+..+.+.+...+++.+.
T Consensus       126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence                   011111    1 1   11212   379999998  689999999999999987653

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.59  E-value=0.00015  Score=60.12  Aligned_cols=73  Identities=30%  Similarity=0.572  Sum_probs=64.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ..+.+.+||++|++.+..++..++.+++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~  120 (175)
T cd01874          47 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD  120 (175)
T ss_pred             EEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhC
Confidence            4578899999999999999999999999999999999999999986 5988887654 57999999999998543

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=97.58  E-value=8.3e-05  Score=68.59  Aligned_cols=146  Identities=23%  Similarity=0.257  Sum_probs=96.4

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .++|+++|.+|||||||+|+|++......                     +...+|.  ++....+.+++. ..+.+|||
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~---------------------~~~~tT~--d~~~~~i~~~~~-~~i~l~DT  244 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAA---------------------DQLFATL--DPTTRRLDLPDG-GEVLLTDT  244 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeec---------------------cCCcccc--CCEEEEEEeCCC-ceEEEEec
Confidence            47999999999999999999998542111                     0111222  223344444332 47899999


Q ss_pred             CCc-c--------cccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         93 AGQ-E--------RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        93 ~g~-~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      +|. .        .|...+ ..+..+|++++|+|++++.+++++..|.+.+....                         
T Consensus       245 ~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-------------------------  298 (351)
T TIGR03156       245 VGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELG-------------------------  298 (351)
T ss_pred             CcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-------------------------
Confidence            997 2        222222 24778999999999999988887776666554321                         


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                                      ..+.|+++|+||+|+.+...+.     ... ....+++.+|+.++.+++.+
T Consensus       299 ----------------~~~~piIlV~NK~Dl~~~~~v~-----~~~-~~~~~~i~iSAktg~GI~eL  343 (351)
T TIGR03156       299 ----------------AEDIPQLLVYNKIDLLDEPRIE-----RLE-EGYPEAVFVSAKTGEGLDLL  343 (351)
T ss_pred             ----------------cCCCCEEEEEEeecCCChHhHH-----HHH-hCCCCEEEEEccCCCCHHHH
Confidence                            1368999999999986532221     111 11235788999998887654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK00098 GTPase RsgA; Reviewed

Probab=97.58  E-value=8.1e-05  Score=67.21  Aligned_cols=81  Identities=19%  Similarity=0.224  Sum_probs=57.6

Q ss_pred             ccCccEEEEEEECCCcchhhh-HHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccE
Q psy15725        106 IRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVI  184 (355)
Q Consensus       106 ~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  184 (355)
                      ..++|.+++|+|+.++..+.. +..|+..+..                                            .++|
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--------------------------------------------~~ip  113 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--------------------------------------------NGIK  113 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------------------------------------------CCCC
Confidence            589999999999998876654 5677766543                                            2789


Q ss_pred             EEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       185 iilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      +++|+||+|+.+.... .....+.....+.+++.+|+.++.+++.++
T Consensus       114 ~iIVlNK~DL~~~~~~-~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~  159 (298)
T PRK00098        114 PIIVLNKIDLLDDLEE-ARELLALYRAIGYDVLELSAKEGEGLDELK  159 (298)
T ss_pred             EEEEEEhHHcCCCHHH-HHHHHHHHHHCCCeEEEEeCCCCccHHHHH
Confidence            9999999999532211 112223334557789999999988877643

>cd04176 Rap2 Rap2 subgroup

Probab=97.57  E-value=0.00012  Score=59.69  Aligned_cols=115  Identities=37%  Similarity=0.568  Sum_probs=101.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||++|++.+..++..++.+++++++|||+++..+++++..|...+..... .++|+++|+||+|+.....+..
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~  126 (163)
T cd04176          47 SPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS  126 (163)
T ss_pred             EEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH
Confidence            356788999999999999999999999999999999999999999999888876532 6899999999999976666666


Q ss_pred             HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      .+...+++..+++++++||++|.|++++|++|++.+
T Consensus       127 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         127 AEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             HHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            667777777788999999999999999999999865

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=97.57  E-value=0.00011  Score=62.33  Aligned_cols=55  Identities=42%  Similarity=0.797  Sum_probs=50.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE  282 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~  282 (355)
                      ..+.+.+||++|++.+..+++.++.+++++++|||++++.+++.+..|+..+...
T Consensus        48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~  102 (201)
T cd04107          48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSK  102 (201)
T ss_pred             CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999999999999999999999999888764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.54  E-value=0.00025  Score=61.14  Aligned_cols=116  Identities=31%  Similarity=0.552  Sum_probs=101.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||+++..+++.+..|+..+.... .++|+++|+||+|+.+ +.+...
T Consensus        60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~  137 (219)
T PLN03071         60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK  137 (219)
T ss_pred             eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHH
Confidence            46789999999999999999999999999999999999999999999999987654 6899999999999853 334444


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      .. .+.+..++++++|||++|.||+++|++|++.+....
T Consensus       138 ~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~~  175 (219)
T PLN03071        138 QV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (219)
T ss_pred             HH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcCc
Confidence            33 666677889999999999999999999999997654

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.53  E-value=0.00015  Score=59.85  Aligned_cols=52  Identities=27%  Similarity=0.511  Sum_probs=46.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||+++..+++.+..|...+
T Consensus        48 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i   99 (172)
T cd04141          48 EPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLI   99 (172)
T ss_pred             EEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999988776554

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.00043  Score=63.77  Aligned_cols=108  Identities=17%  Similarity=0.167  Sum_probs=77.3

Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCCHHHH
Q psy15725        231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVSTEEG  309 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~  309 (355)
                      ...++|.+|++.+-.-.-..+...|..++|++.++....+..+ .+..+ +.  -+++ .++|+||+|..++..+. +..
T Consensus        51 ~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgE-hL~iL-dl--lgi~~giivltk~D~~d~~r~e-~~i  125 (447)
T COG3276          51 VMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGE-HLLIL-DL--LGIKNGIIVLTKADRVDEARIE-QKI  125 (447)
T ss_pred             ceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHH-HHHHH-Hh--cCCCceEEEEeccccccHHHHH-HHH
Confidence            7789999999998776666677899999999998776655432 22222 22  3555 69999999997654321 122


Q ss_pred             HHHHhh---cCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        310 ERKAKE---LNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       310 ~~~~~~---~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ......   ...++|.+||++|.||++|-++|.+...
T Consensus       126 ~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         126 KQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             HHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            222222   2258999999999999999999999884

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.53  E-value=0.00019  Score=72.41  Aligned_cols=96  Identities=19%  Similarity=0.183  Sum_probs=65.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ++..+.++||+|...+...+...+..+|++++|+|.++....+... +...+..   .++|+++++||+|+...+.  ..
T Consensus        73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~---~~~p~ivviNK~D~~~~~~--~~  146 (689)
T TIGR00484        73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR---YEVPRIAFVNKMDKTGANF--LR  146 (689)
T ss_pred             CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH---cCCCEEEEEECCCCCCCCH--HH
Confidence            3578899999999888777888899999999999998876655432 2233333   5799999999999864331  11


Q ss_pred             HHHHHHhhcC---c-EEEEecCCCCC
Q psy15725        308 EGERKAKELN---V-MFIETSAKAGY  329 (355)
Q Consensus       308 ~~~~~~~~~~---~-~~~~~SA~~~~  329 (355)
                      ....+....+   + ..+++||..+.
T Consensus       147 ~~~~i~~~l~~~~~~~~ipis~~~~~  172 (689)
T TIGR00484       147 VVNQIKQRLGANAVPIQLPIGAEDNF  172 (689)
T ss_pred             HHHHHHHHhCCCceeEEeccccCCCc
Confidence            1122222222   1 36788887764

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR00959 ffh signal recognition particle protein

Probab=97.52  E-value=0.0014  Score=61.77  Aligned_cols=92  Identities=13%  Similarity=0.086  Sum_probs=49.9

Q ss_pred             EEEEEEeCCCcccccc-ccc-----ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc
Q psy15725        230 VRLQLWDTAGQERFRS-LIP-----SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~-~~~-----~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~  303 (355)
                      +-+.|+||+|...... +..     ...-..+.+++|+|....   ++...+...+.+..  + ..-+|.||.|-..   
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~-i~giIlTKlD~~~---  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--G-LTGVVLTKLDGDA---  253 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence            3456889998432211 110     012245678999997643   34334444443321  2 3467799999521   


Q ss_pred             CCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        304 VSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                       ....+.......++|+.+++.  |+++++
T Consensus       254 -~~G~~lsi~~~~~~PI~fi~~--Ge~i~d  280 (428)
T TIGR00959       254 -RGGAALSVRSVTGKPIKFIGV--GEKIDD  280 (428)
T ss_pred             -cccHHHHHHHHHCcCEEEEeC--CCChhh
Confidence             122355666667788877665  444444

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd04124 RabL2 RabL2 subfamily

Probab=97.50  E-value=0.00018  Score=58.62  Aligned_cols=116  Identities=31%  Similarity=0.530  Sum_probs=98.9

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ...+.+.+||++|++.+..++..++..++++++|||++++.+++++..|+..+.... .++|+++|+||+|+...  . .
T Consensus        46 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~--~-~  121 (161)
T cd04124          46 GKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS--V-T  121 (161)
T ss_pred             CEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh--H-H
Confidence            346788999999999999999999999999999999999999999999999987644 57999999999998422  1 2


Q ss_pred             HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      .+...+++..+++++++||++|.|++++|+.+++.+.+.|
T Consensus       122 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  161 (161)
T cd04124         122 QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSYK  161 (161)
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence            3344566667789999999999999999999999887654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04136 Rap_like Rap-like subfamily

Probab=97.50  E-value=0.00017  Score=58.66  Aligned_cols=115  Identities=37%  Similarity=0.566  Sum_probs=101.7

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||++|++.+..++..++.+++++++|||+++..+++.+..|...+..... .++|+++|+||+|+...+.+..
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  126 (163)
T cd04136          47 QQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR  126 (163)
T ss_pred             EEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH
Confidence            456788999999999999999999999999999999999999999999988876543 5899999999999976666767


Q ss_pred             HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      .+...+++.++++++++||++|.||+++|++|.+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         127 EEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            777777777789999999999999999999999875

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.49  E-value=0.00012  Score=55.33  Aligned_cols=99  Identities=20%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             EEeCCCcccccccc----cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH
Q psy15725        234 LWDTAGQERFRSLI----PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG  309 (355)
Q Consensus       234 i~D~~g~~~~~~~~----~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  309 (355)
                      .+||+|...-...|    .....+++.++++-...++.+.-.     ..+...  -.+|+|-+.+|.|+.++..+  +..
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~dI--~~~  111 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDADI--SLV  111 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc--cccceEEEEecccccchHhH--HHH
Confidence            57888854433333    334568889999888887754211     112221  24669999999999764444  234


Q ss_pred             HHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHH
Q psy15725        310 ERKAKELNV-MFIETSAKAGYNVKQLFRRVAAA  341 (355)
Q Consensus       310 ~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~  341 (355)
                      +.+...-|. ++|.+||.++.||++++++|...
T Consensus       112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917         112 KRWLREAGAEPIFETSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             HHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence            445555565 89999999999999999998754

>cd04128 Spg1 Spg1p

Probab=97.49  E-value=0.00015  Score=60.57  Aligned_cols=117  Identities=23%  Similarity=0.462  Sum_probs=98.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC-----cc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-----KR  302 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-----~~  302 (355)
                      ..+.+.+||++|++.|..+++.++.+++++++|||++++.+++++..|+..+........| ++|+||+|+..     ..
T Consensus        47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~  125 (182)
T cd04128          47 TEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQ  125 (182)
T ss_pred             EEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhh
Confidence            4688999999999999999999999999999999999999999999999998775545677 67899999852     11


Q ss_pred             cCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       303 ~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .....+...+++..++++++|||++|.||+++|+++++.+...
T Consensus       126 ~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~  168 (182)
T cd04128         126 EEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDL  168 (182)
T ss_pred             hhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            1223456667778889999999999999999999999988653

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		6e-82
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		8e-64
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-79
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-62
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-78
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-61
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-76
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		7e-63
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-75
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		5e-60
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-73
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-58
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-71
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		5e-56
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-52
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-41
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-29
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-25
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		6e-29
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-25
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		6e-29
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-25
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		8e-29
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		3e-25
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		9e-29
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-25
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-28
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-25
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-28
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-25
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-28
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-25
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-28
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-25
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-28
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-25
2efc_B	181	Ara7-GdpATVPS9A Length = 181		8e-28
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-27
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-24
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-27
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-23
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-27
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-27
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-26
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-27
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-24
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-27
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		7e-27
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		8e-25
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		9e-27
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-24
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-26
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		9e-26
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-26
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-26
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		8e-26
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-25
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-25
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-22
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-25
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		5e-20
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-25
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-21
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-25
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-21
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-25
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		9e-23
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-25
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-21
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		9e-25
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-24
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-24
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		4e-21
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-24
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		6e-21
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-24
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		3e-22
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		6e-24
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		7e-23
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		6e-24
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-21
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		7e-24
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		8e-24
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-21
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-23
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		8e-21
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-23
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-21
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-23
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		6e-21
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-23
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		7e-21
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-23
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-21
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-23
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-23
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-21
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-23
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-21
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-23
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-22
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-23
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-20
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-23
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-22
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-23
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-20
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-23
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		6e-23
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-20
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		6e-23
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-23
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		6e-23
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-23
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		7e-23
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		8e-21
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		7e-23
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		9e-22
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-22
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-22
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-19
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-22
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-19
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-22
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-19
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-22
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		6e-20
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-22
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-22
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		4e-22
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-18
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		8e-22
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		8e-21
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		9e-22
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-14
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-21
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-14
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-21
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		6e-20
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-21
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-14
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-21
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		6e-20
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		8e-21
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		4e-20
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		9e-21
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		8e-14
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-20
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-19
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-20
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-18
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-20
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-19
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-20
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-13
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		4e-20
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		6e-17
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-20
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-18
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-20
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-18
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-20
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-17
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		6e-20
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-13
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-20
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-16
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-19
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-18
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-19
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-18
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-18
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-17
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		8e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-17
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-16
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-17
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-16
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-17
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-16
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-17
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-16
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-17
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-16
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-17
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-13
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-17
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		4e-16
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-17
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		4e-16
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		5e-17
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-13
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		5e-17
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		4e-13
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-17
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		4e-16
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-16
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-15
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-15
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-10
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-14
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-14
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-13
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-14
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-13
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-13
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-13
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		9e-13
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		9e-13
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		5e-12
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		7e-12
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		8e-12
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-11
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		1e-11
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		5e-10
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-11
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-11
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-11
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		5e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		5e-11
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-11
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		5e-11
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-09
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		7e-11
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		8e-11
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		7e-11
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		9e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		9e-11
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		1e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-10
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-10
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		3e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-10
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-10
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-10
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-10
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		3e-10
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-10
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-10
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-10
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-10
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-10
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-10
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-10
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-10
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-10
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		2e-10
1byu_A	216	Canine Gdp-Ran Length = 216		2e-10
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		3e-10
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		3e-10
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		5e-10
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-10
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-09
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		5e-10
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		7e-10
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-10
1mh1_A	186	Small G-Protein Length = 186		5e-10
1mh1_A	186	Small G-Protein Length = 186		9e-09
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		6e-10
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-10
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		6e-10
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-09
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		7e-10
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-08
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-10
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-08
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		8e-10
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-08
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		9e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		9e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-09
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-09
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-09
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		1e-09
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-09
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-09
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-09
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-09
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-09
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-09
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-09
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-09
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-09
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-09
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-08
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-09
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-09
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-09
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-09
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-09
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-09
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-09
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-09
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-09
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-09
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-09
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-09
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-09
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-09
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-09
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-09
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-09
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-09
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-09
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-09
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-09
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-09
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-09
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-09
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-09
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-09
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-09
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		8e-09
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-09
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-09
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-09
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-09
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-09
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		2e-09
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-09
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-08
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-09
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-08
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-09
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-08
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-09
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-09
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-08
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-09
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-08
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-09
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-08
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-09
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-08
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-09
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-08
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-09
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-09
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-08
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-06
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-09
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-08
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-09
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-08
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-09
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-09
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-08
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-09
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-08
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-09
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		4e-08
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-09
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-09
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		4e-08
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-09
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		5e-09
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-09
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-08
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		6e-09
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-08
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		6e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		6e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-08
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		9e-09
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		9e-09
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-08
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		1e-08
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-08
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-08
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-08
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-08
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-07
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-08
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-08
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-08
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-08
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-08
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-07
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-08
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-08
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-08
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-08
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-07
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-08
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-07
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		7e-08
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-07
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		8e-08
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-05
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-07
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-05
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-05
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		5e-07
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-05
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-07
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-07
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		7e-07
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		7e-07
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		7e-07
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		7e-07
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		7e-07
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		7e-07
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		7e-07
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		7e-07
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		8e-07
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		9e-07
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-06
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-06
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-06
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-06
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-06
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-06
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-06
2kb0_A	178	Cdc42(T35a) Length = 178		1e-06
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		5e-06
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		5e-06
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		6e-06
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-05
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		3e-04
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		5e-05
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		3e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		5e-05
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		1e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		1e-04

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  300 bits (769), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 162/228 (71%), Positives = 163/228 (71%), Gaps = 64/228 (28%)
Query: 3   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
           SSGDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDSFD
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFD 40
Query: 63  NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
           NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN N
Sbjct: 41  NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN 100
Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
           SFHQTSKWIDDVRTERGSDVIIML                                    
Sbjct: 101 SFHQTSKWIDDVRTERGSDVIIML------------------------------------ 124
Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 125 -----VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  240 bits (613), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/119 (97%), Positives = 117/119 (98%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 61  RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
           IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  292 bits (748), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/230 (68%), Positives = 161/230 (70%), Gaps = 64/230 (27%)
Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 40
Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 41  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QT+KWIDDVRTERGSDVIIML                                  
Sbjct: 101 VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 126
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 127 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 169

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  236 bits (603), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/128 (89%), Positives = 121/128 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + VRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 63  RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
           IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182
Query: 348 TENKPPED 355
           T+++  ED
Sbjct: 183 TQDRSRED 190

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  289 bits (740), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/230 (66%), Positives = 159/230 (69%), Gaps = 64/230 (27%)
Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDS
Sbjct: 1   MSTGGDFGNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDS 37
Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAG ERFRSLIPSYIRDS  AVVVYDITN
Sbjct: 38  FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN 97
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            NSF QT+KWIDDVRTERGSDVIIML                                  
Sbjct: 98  VNSFQQTTKWIDDVRTERGSDVIIML---------------------------------- 123
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                  VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 124 -------VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  233 bits (594), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/128 (86%), Positives = 119/128 (92%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + +RLQLWDTAG ERFRSLIPSYIRDS  AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 60  RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
           IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 120 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 179
Query: 348 TENKPPED 355
           T+++  ED
Sbjct: 180 TQDRSRED 187

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  281 bits (719), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 152/223 (68%), Positives = 155/223 (69%), Gaps = 64/223 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GNPLRKFKLVFLGEQSVGKTSL                       ITRFMYDSFDNTYQA
Sbjct: 1   GNPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQA 37
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIGIDFLSKTMYLEDRTVRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT
Sbjct: 38  TIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
           +KWIDDVRTERGSDVIIML                                         
Sbjct: 98  TKWIDDVRTERGSDVIIML----------------------------------------- 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 159

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  237 bits (605), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/128 (89%), Positives = 121/128 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + VRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 53  RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
           IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 113 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 172
Query: 348 TENKPPED 355
           T+++  ED
Sbjct: 173 TQDRSRED 180

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 149/223 (66%), Positives = 154/223 (69%), Gaps = 64/223 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G+PLRKFKLVFLGEQSVGKTSL                       ITRFMYDSFDNTYQA
Sbjct: 1   GSPLRKFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQA 37
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIGIDFLSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS  AVVVYDITN NSF QT
Sbjct: 38  TIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
           +KWIDDVRTERGSDVIIML                                         
Sbjct: 98  TKWIDDVRTERGSDVIIML----------------------------------------- 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           VGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 117 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 159

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  228 bits (580), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 108/118 (91%), Positives = 112/118 (94%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + +RLQLWDTAGQERFRSLIPSYIRDS  AVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 53  RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
           IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM
Sbjct: 113 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 170

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/218 (67%), Positives = 151/218 (69%), Gaps = 64/218 (29%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           KFKLVFLGEQSVGKTSL                       ITRFMYDSFDNTYQATIGID
Sbjct: 1   KFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQATIGID 37
Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
           FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWID
Sbjct: 38  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWID 97
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
           DVRTERGSDVIIML                                         VGNKT
Sbjct: 98  DVRTERGSDVIIML-----------------------------------------VGNKT 116
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           DL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 117 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 154

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  223 bits (569), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/115 (93%), Positives = 111/115 (96%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 48  RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 107
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL
Sbjct: 108 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  265 bits (676), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 143/218 (65%), Positives = 150/218 (68%), Gaps = 64/218 (29%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           KFKLVFLGEQSVGKTSL                       ITRFMYDSFDNTYQATIGID
Sbjct: 2   KFKLVFLGEQSVGKTSL-----------------------ITRFMYDSFDNTYQATIGID 38
Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
           FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWID
Sbjct: 39  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWID 98
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
           DVRTERGSDVIIML                                         VGNKT
Sbjct: 99  DVRTERGSDVIIML-----------------------------------------VGNKT 117
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           DL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQ+
Sbjct: 118 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQL 155

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  214 bits (546), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/115 (88%), Positives = 110/115 (95%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSF QTSKWIDDVRTERGSDV
Sbjct: 49  RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDV 108
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           IIMLVGNKTDL+DKRQ++ EEGE++AKEL+VMFIETSAK GYNVKQLFRRVA+AL
Sbjct: 109 IIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/216 (51%), Positives = 129/216 (59%), Gaps = 64/216 (29%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           K+KLVFLGEQ+VGKTS+I                       TRF YD+FDN YQ+TIGID
Sbjct: 1   KYKLVFLGEQAVGKTSII-----------------------TRFXYDTFDNNYQSTIGID 37
Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
           FLSKT+YL++  VRLQLWDTAGQERFRSLIPSYIRDS  A+VVYDITN  SF  T+KWI 
Sbjct: 38  FLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQ 97
Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
           D+  ERG DVII L                                         VGNKT
Sbjct: 98  DILNERGKDVIIAL-----------------------------------------VGNKT 116
Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
           DL D R+V+ EEG +KA+E N  F ETSAKAG+N+K
Sbjct: 117 DLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIK 152

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 91/113 (80%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           VRLQLWDTAGQERFRSLIPSYIRDS  A+VVYDITN  SF  T+KWI D+  ERG DVII
Sbjct: 50  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 109
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            LVGNKTDL D R+V+ EEG +KA+E N  F ETSAKAG+N+K LF++ A+ L
Sbjct: 110 ALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  125 bits (315), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 64/227 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE                       ++VGK+SL+ RF+   F    ++
Sbjct: 1   GNKICQFKLVLLGE-----------------------SLVGKSSLVLRFVKGQFHEFQES 37
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF + 
Sbjct: 38  TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ +++ +   +++I L G                                       
Sbjct: 98  KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
             NK DL++KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   +++I
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE +VGK+SL+                        RF+   F    ++
Sbjct: 2   GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 38
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF + 
Sbjct: 39  TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 98
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ +++ +   +++I L G                                       
Sbjct: 99  KNWVKELQRQASPNIVIALSG--------------------------------------- 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
             NK DL++KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 120 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   +++I
Sbjct: 56  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 169

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE +VGK+SL+                        RF+   F    ++
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF + 
Sbjct: 38  TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ +++ +   +++I L G                                       
Sbjct: 98  KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
             NK DL++KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   +++I
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT ++ RF  D+F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y 
Sbjct: 19  VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDITN  SF     WI ++                          HA++  
Sbjct: 79  RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 112
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          DV  M++GNK D++DKRQVS E GE+ A +  + F+ETSAKA  N
Sbjct: 113 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
Query: 227 VKQVRLQL 234
           V+     L
Sbjct: 158 VENAFFTL 165

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++LQ+WDTAGQERFR++  +Y R +   ++VYDITN  SF     WI ++     +DV
Sbjct: 55  KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
             M++GNK D++DKRQVS E GE+ A +  + F+ETSAKA  NV+  F  +A
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 64/227 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE                       + VGK+SL+ RF+   F    ++
Sbjct: 1   GNKICQFKLVLLGE-----------------------SPVGKSSLVLRFVKGQFHEFQES 37
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF + 
Sbjct: 38  TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ +++ +   +++I L G                                       
Sbjct: 98  KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
             NK DL++KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   +++I
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 64/223 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE +VGK+SL+                        RF+   F    ++
Sbjct: 2   GNKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQES 38
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF + 
Sbjct: 39  TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARA 98
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ +++ +   +++I L G                                       
Sbjct: 99  KNWVKELQRQASPNIVIALSG--------------------------------------- 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
             NK DL++KR V  +E +  A + +++F ETSAK   NV ++
Sbjct: 120 --NKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEI 160

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   +++I
Sbjct: 56  VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  +E +  A + +++F ETSAK   NV ++F  +A  LP
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLP 169

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 103/188 (54%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT ++ RF  D+F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y 
Sbjct: 17  VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDITN  SF     WI ++                          HA++  
Sbjct: 77  RGAMGIMLVYDITNEKSFDNIRNWIRNIE------------------------EHASA-- 110
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          DV  M++GNK D++DKRQVS E GE+ A +  + F+ETSAKA  N
Sbjct: 111 ---------------DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 155
Query: 227 VKQVRLQL 234
           V+     L
Sbjct: 156 VENAFFTL 163

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++LQ+WDTAGQERFR++  +Y R +   ++VYDITN  SF     WI ++     +DV
Sbjct: 53  KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
             M++GNK D++DKRQVS E GE+ A +  + F+ETSAKA  NV+  F  +A
Sbjct: 113 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE  VGK+SL+                        RF+   F    ++
Sbjct: 1   GNKICQFKLVLLGESEVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF + 
Sbjct: 38  TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ +++ +   +++I L G                                       
Sbjct: 98  KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
             NK DL++KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   +++I
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE  VGK+SL+                        RF+   F    ++
Sbjct: 1   GNKICQFKLVLLGESKVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF + 
Sbjct: 38  TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ +++ +   +++I L G                                       
Sbjct: 98  KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
             NK DL++KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   +++I
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 64/227 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE  VGK+SL+                        RF+   F    ++
Sbjct: 1   GNKICQFKLVLLGESRVGKSSLVL-----------------------RFVKGQFHEFQES 37
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF + 
Sbjct: 38  TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ +++ +   +++I L G                                       
Sbjct: 98  KNWVKELQRQASPNIVIALSG--------------------------------------- 118
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
             NK DL++KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 119 --NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 76/114 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   +++I
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 82/121 (67%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A++V+D+TN  SF +  KW+ +++ +   ++++
Sbjct: 61  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVM 120
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
            L GNK+DL D R+V+ E+ +  A+E  + F+ETSAK   NVK++F  +A  LP +  TE
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180
Query: 350 N 350
           N
Sbjct: 181 N 181

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 64/224 (28%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           + +FKLV LGE +VGK+SL+                        RF+   F    ++TIG
Sbjct: 1   ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIG 37
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
             FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN ++F +   W
Sbjct: 38  AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 97
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           + +++ +   +++I L G                                         N
Sbjct: 98  VKELQRQASPNIVIALAG-----------------------------------------N 116
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           K DL+ KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 117 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 75/113 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN ++F +   W+ +++ +   +++I
Sbjct: 52  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 111
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            L GNK DL+ KR V  +E +  A + +++F+ETSAK   NV ++F  +A  L
Sbjct: 112 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++ ++Y +TIG+DF  +T+ LE++TV+LQ+WDTAGQERFR++  SY 
Sbjct: 20  VGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD+T+ +SF    +WI ++                       +  + N   
Sbjct: 80  RGAHGIIIVYDVTDRDSFDNVKQWIQEI--------------------DRYAMENVNK-- 117
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                              +LVGNK DL  KR V+++EG   A    + FIETSAK  YN
Sbjct: 118 -------------------LLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYN 158
Query: 227 VKQ 229
           V+Q
Sbjct: 159 VEQ 161

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 74/116 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFR++  SY R +   ++VYD+T+ +SF    +WI ++      +V
Sbjct: 56  KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
             +LVGNK DL  KR V+++EG   A    + FIETSAK  YNV+Q F  +A  + 
Sbjct: 116 NKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIK 171

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 79/108 (73%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           KQ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT  ++F+  + W++D R    S++
Sbjct: 57  KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNM 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           +IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F
Sbjct: 117 VIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 64/224 (28%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           + +FKLV LGE +VGK+SL+                        RF+   F    ++TIG
Sbjct: 6   ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIG 42
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
             FL++++ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  +F +   W
Sbjct: 43  AAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTW 102
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           + +++ +    ++I                                          L GN
Sbjct: 103 VKELQRQASPSIVI-----------------------------------------ALAGN 121
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           K DL++KR V  EE +  A + +++F+ETSAK   NV  + L +
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAI 165

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 74/114 (64%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  +F +   W+ +++ +    ++I
Sbjct: 57  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 116
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  EE +  A + +++F+ETSAK   NV  LF  +A  LP
Sbjct: 117 ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLP 170

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 64/226 (28%)
Query: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
           N + +FKLV LGE +VGK+SL+                        RF+   F    ++T
Sbjct: 1   NKICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEFQEST 37
Query: 69  IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
           IG  FL++T+ L+D TV+ ++WDTAG ER+ SL P Y R +  A+VVYDITN  SF +  
Sbjct: 38  IGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 97
Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
            W+ +++ +   +++I L G                                        
Sbjct: 98  NWVKELQRQASPNIVIALSG---------------------------------------- 117
Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            NK DL++KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 118 -NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAG ER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   +++I
Sbjct: 54  VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 113
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 114 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 167

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 77/108 (71%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           KQ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F+  + W++D R    S++
Sbjct: 68  KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           +IML+GNK+DL  +R V  EEGE  A+E  ++F+ETSAK   NV++ F
Sbjct: 128 VIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  117 bits (294), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 64/224 (28%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           + +FKLV LGE +VGK+SL+                        RF+   F    ++TIG
Sbjct: 3   ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIG 39
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
             FL++T+ L+D TV+ ++WDTAG ER+ SL P Y R +  A+VVYDITN ++F +   W
Sbjct: 40  AAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           + +++ +   +++I L G                                         N
Sbjct: 100 VKELQRQASPNIVIALAG-----------------------------------------N 118
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           K DL+ KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 75/114 (65%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAG ER+ SL P Y R +  A+VVYDITN ++F +   W+ +++ +   +++I
Sbjct: 54  VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            L GNK DL+ KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 64/224 (28%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           + +FKLV LGE +VGK+SL+                        RF+   F    ++TI 
Sbjct: 3   ICQFKLVLLGESAVGKSSLVL-----------------------RFVKGQFHEYQESTIQ 39
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
             FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN ++F +   W
Sbjct: 40  AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNW 99
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           + +++ +   +++I L G                                         N
Sbjct: 100 VKELQRQASPNIVIALAG-----------------------------------------N 118
Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           K DL+ KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 75/113 (66%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN ++F +   W+ +++ +   +++I
Sbjct: 54  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            L GNK DL+ KR V  +E +  A + +++F+ETSAK   NV ++F  +A  L
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 44/191 (23%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+S++ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQERF SL P Y 
Sbjct: 14  VGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYY 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R++  A+VVYD+T   SF +   W+ ++  +   D+II L                    
Sbjct: 74  RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIAL-------------------- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDL---SDKRQVSTEEGERKAKELNVMFIETSAKA 223
                                VGNK D      +R+V+ EEGE+ A+E  ++F ETSAK 
Sbjct: 114 ---------------------VGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKT 152
Query: 224 GYNVKQVRLQL 234
           G NV  V L +
Sbjct: 153 GENVNDVFLGI 163

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  114 bits (285), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVA 257
           R VS +  E K   +   F+  + +   N   V+ ++WDTAGQERF SL P Y R++  A
Sbjct: 22  RFVSNDFAENKEPTIGAAFL--TQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAA 79
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL---SDKRQVSTEEGERKAK 314
           +VVYD+T   SF +   W+ ++  +   D+II LVGNK D      +R+V+ EEGE+ A+
Sbjct: 80  LVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAE 139
Query: 315 ELNVMFIETSAKAGYNVKQLFRRVAAALP 343
           E  ++F ETSAK G NV  +F  +   +P
Sbjct: 140 EKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 95/186 (51%), Gaps = 41/186 (22%)
Query: 45  TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
           T VGK+S++ RF+ D FD+    TIG  F++KT+   +   +  +WDTAGQERF SL P 
Sbjct: 32  TGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPM 91
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
           Y R S  AV+VYDIT  +SF+   KW+ +++ E G + I+M +                 
Sbjct: 92  YYRGSAAAVIVYDITKQDSFYTLKKWVKELK-EHGPENIVMAIA---------------- 134
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
                                   GNK DLSD R+V  ++ +  A+ +  + +ETSAK  
Sbjct: 135 ------------------------GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNA 170
Query: 225 YNVKQV 230
            N++++
Sbjct: 171 INIEEL 176

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 78/120 (65%)
Query: 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM 290
           +  +WDTAGQERF SL P Y R S  AV+VYDIT  +SF+   KW+ +++     ++++ 
Sbjct: 73  KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
           + GNK DLSD R+V  ++ +  A+ +  + +ETSAK   N+++LF+ ++  +P +D  EN
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  114 bits (285), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V+LQ+WDTAGQERFR++  SY R +  A++ YDIT  +SF     WI+DVR   GS++
Sbjct: 76  KRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF-IETSAKAGYNVKQLFRRVAAAL 342
           + +L+GNK+DLS+ R+VS  E +  A+  +++  IETSAK   NV++ F RVA  L
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFRS+  SY R +  A++VYDIT+  +++  + W+ D RT    ++
Sbjct: 72  KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI 131
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA-AALPGMD 346
           +++L GNK DL  +R+V+  E  R A+E  +MF+ETSA  G NV++ F + A   L  +D
Sbjct: 132 VVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKID 191
Query: 347 STENKP 352
           S E  P
Sbjct: 192 SGELDP 197

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTS + R+  DSF   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQER+R++  +Y 
Sbjct: 33  VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +++YDI N  SF     W   ++T    +  ++L                    
Sbjct: 93  RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL-------------------- 132
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                VGNK DL D+R V  E+G R A +L   F E SAK   N
Sbjct: 133 ---------------------VGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171
Query: 227 VKQVRLQLWDTAGQE 241
           VKQV  +L D   ++
Sbjct: 172 VKQVFERLVDVICEK 186

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 70/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++LQ+WDTAGQER+R++  +Y R +   +++YDI N  SF     W   ++T    + 
Sbjct: 69  KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
            ++LVGNK DL D+R V  E+G R A +L   F E SAK   NVKQ+F R+
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 99/191 (51%), Gaps = 42/191 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTSL+ RF  D+F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQERF S+  +Y 
Sbjct: 37  VGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY 96
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDIT   +F    KW+                                   
Sbjct: 97  RSAKGIILVYDITKKETFDDLPKWM----------------------------------- 121
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 225
              K ID   +E   D  ++LVGNK D    R+++ ++GE+ A+++  M F E SAK  +
Sbjct: 122 ---KMIDKYASE---DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175
Query: 226 NVKQVRLQLWD 236
           NV ++ L+L D
Sbjct: 176 NVDEIFLKLVD 186

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K++RLQ+WDTAGQERF S+  +Y R +   ++VYDIT   +F    KW+  +      D 
Sbjct: 73  KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRV 338
            ++LVGNK D    R+++ ++GE+ A+++  M F E SAK  +NV ++F ++
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 42/188 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF+ D F+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQERFR++  +Y 
Sbjct: 31  VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY 90
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD+T+  +F    +W   V                          HAN   
Sbjct: 91  RGAMGIILVYDVTDERTFTNIKQWFKTVN------------------------EHANDEA 126
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
           Q                 ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   N
Sbjct: 127 Q-----------------LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 168
Query: 227 VKQVRLQL 234
           V ++   L
Sbjct: 169 VNEIFFTL 176

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N K+V+LQLWDTAGQERFR++  +Y R +   ++VYD+T+  +F    +W   V      
Sbjct: 65  NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND 124
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +  ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   NV ++F  +A
Sbjct: 125 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 42/188 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF+ D F+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQERFR++  +Y 
Sbjct: 18  VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD+T+  +F    +W   V                          HAN   
Sbjct: 78  RGAMGIILVYDVTDERTFTNIKQWFKTVN------------------------EHANDEA 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
           Q                 ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   N
Sbjct: 114 Q-----------------LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 155
Query: 227 VKQVRLQL 234
           V ++   L
Sbjct: 156 VNEIFFTL 163

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N K+V+LQLWDTAGQERFR++  +Y R +   ++VYD+T+  +F    +W   V      
Sbjct: 52  NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND 111
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +  ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   NV ++F  +A
Sbjct: 112 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 164

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  111 bits (277), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTS + R+  DSF   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQER+R++  +Y 
Sbjct: 16  VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +++YDITN  SF+    W   ++T    +  ++L                    
Sbjct: 76  RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL-------------------- 115
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                VGNK D+ D+R VS+E G + A  L   F E SAK   N
Sbjct: 116 ---------------------VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 154
Query: 227 VKQVRLQLWDTAGQE 241
           VKQ   +L D   ++
Sbjct: 155 VKQTFERLVDVICEK 169

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 72/113 (63%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N K+++LQ+WDTAGQER+R++  +Y R +   +++YDITN  SF+    W   ++T    
Sbjct: 50  NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 109
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +  ++LVGNK D+ D+R VS+E G + A  L   F E SAK   NVKQ F R+
Sbjct: 110 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 42/188 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF+ D F+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQERFR++  +Y 
Sbjct: 14  VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDIT+  +F    +W   V                          HAN   
Sbjct: 74  RGAMGIILVYDITDERTFTNIKQWFKTVN------------------------EHANDEA 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
           Q                 ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   N
Sbjct: 110 Q-----------------LLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 151
Query: 227 VKQVRLQL 234
           V ++   L
Sbjct: 152 VNEIFFTL 159

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N K+V+LQ+WDTAGQERFR++  +Y R +   ++VYDIT+  +F    +W   V      
Sbjct: 48  NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND 107
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +  ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   NV ++F  +A
Sbjct: 108 EAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 63/214 (29%)
Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK++ +G+  VGKT L+ RF   +F                         T+ +T+GIDF
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAF----------------------LAGTFISTVGIDF 48
Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            +K + ++   V+LQ+WDTAGQERFRS+  +Y RD+   +++YD+TN  SF     W+ +
Sbjct: 49  RNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE 108
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +      DV +M                                         L+GNK D
Sbjct: 109 IHEYAQHDVALM-----------------------------------------LLGNKVD 127
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV 227
            + +R V  E+GE+ AKE  + F+ETSAK G NV
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/114 (45%), Positives = 74/114 (64%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
           +V+LQ+WDTAGQERFRS+  +Y RD+   +++YD+TN  SF     W+ ++      DV 
Sbjct: 59  KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA 118
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +ML+GNK D + +R V  E+GE+ AKE  + F+ETSAK G NV   F  +A  L
Sbjct: 119 LMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 42/188 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF+ D F+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQERFR++  +Y 
Sbjct: 14  VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD+T+  +F    +W   V                          HAN   
Sbjct: 74  RGAXGIILVYDVTDERTFTNIKQWFKTVN------------------------EHANDEA 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
           Q                 ++LVGNK+D  + R V+ ++GE  AKEL + FIE+SAK   N
Sbjct: 110 Q-----------------LLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDN 151
Query: 227 VKQVRLQL 234
           V ++   L
Sbjct: 152 VNEIFFTL 159

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N K+V+LQLWDTAGQERFR++  +Y R +   ++VYD+T+  +F    +W   V      
Sbjct: 48  NGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAND 107
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +  ++LVGNK+D  + R V+ ++GE  AKEL + FIE+SAK   NV ++F  +A
Sbjct: 108 EAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 42/188 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF+ D F+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQERFR++  +Y 
Sbjct: 14  VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDIT+  +F    +W   V                          HAN   
Sbjct: 74  RGAXGIILVYDITDERTFTNIKQWFKTVN------------------------EHANDEA 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
           Q                 ++LVGNK+D  + R V+ ++GE  AKEL + FIE+SAK   N
Sbjct: 110 Q-----------------LLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDN 151
Query: 227 VKQVRLQL 234
           V ++   L
Sbjct: 152 VNEIFFTL 159

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N K+V+LQ+WDTAGQERFR++  +Y R +   ++VYDIT+  +F    +W   V      
Sbjct: 48  NGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAND 107
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +  ++LVGNK+D  + R V+ ++GE  AKEL + FIE+SAK   NV ++F  +A
Sbjct: 108 EAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 41/190 (21%)
Query: 45  TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 104
           T VGK+S++ RF+ DSFD     TIG  F++KT+  ++   +  +WDTAGQERFR+L P 
Sbjct: 14  TGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPM 73
Query: 105 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS 164
           Y R S  A++VYDIT   +F     W+ ++R + G   I                     
Sbjct: 74  YYRGSAAAIIVYDITKEETFSTLKNWVRELR-QHGPPSI--------------------- 111
Query: 165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 224
                              ++ + GNK DL+D R+V   + +  A  ++ +F+ETSAK  
Sbjct: 112 -------------------VVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNA 152
Query: 225 YNVKQVRLQL 234
            N+ ++ +++
Sbjct: 153 ININELFIEI 162

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 7/134 (5%)
Query: 217 IETSAKAGYNVKQVRLQ-------LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
           I  +  A +  K V+ Q       +WDTAGQERFR+L P Y R S  A++VYDIT   +F
Sbjct: 34  INPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETF 93
Query: 270 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
                W+ ++R      +++ + GNK DL+D R+V   + +  A  ++ +F+ETSAK   
Sbjct: 94  STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI 153
Query: 330 NVKQLFRRVAAALP 343
           N+ +LF  ++  +P
Sbjct: 154 NINELFIEISRRIP 167

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 41/189 (21%)
Query: 46  IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
            VGKTSL+ R+  + F++ +  T+G  FL+K + +  + V L +WDTAGQERF +L P Y
Sbjct: 16  CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 75
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            RDS  A++VYDIT+ +SF +   W+ ++R   G+++ + +V                  
Sbjct: 76  YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV------------------ 117
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                                  GNK DL  +R VS +E E  A+ +      TSAK   
Sbjct: 118 -----------------------GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNK 154
Query: 226 NVKQVRLQL 234
            ++++ L L
Sbjct: 155 GIEELFLDL 163

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V L +WDTAGQERF +L P Y RDS  A++VYDIT+ +SF +   W+ ++R   G+++
Sbjct: 53  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
            + +VGNK DL  +R VS +E E  A+ +      TSAK    +++LF
Sbjct: 113 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 95/200 (47%), Gaps = 41/200 (20%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTS + R+  DSF   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG ER+R++  +Y 
Sbjct: 19  VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++ YDITN  SF+    W   ++T    +  ++L                    
Sbjct: 79  RGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLL-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                VGNK D  D+R VS+E G + A  L   F E SAK   N
Sbjct: 119 ---------------------VGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157
Query: 227 VKQVRLQLWDTAGQERFRSL 246
           VKQ   +L D   ++   SL
Sbjct: 158 VKQTFERLVDVICEKXSESL 177

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 69/113 (61%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N K+++LQ+WDTAG ER+R++  +Y R +   ++ YDITN  SF+    W   ++T    
Sbjct: 53  NDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWD 112
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +  ++LVGNK D  D+R VS+E G + A  L   F E SAK   NVKQ F R+
Sbjct: 113 NAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFRS+  SY R +  A++VYDIT+  +++  + W+ D R     ++
Sbjct: 57  KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA-AALPGMD 346
           +I+L GNK DL   R+V+  E  R A+E  +MF+ETSA  G NV++ F + A   L  ++
Sbjct: 117 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176
Query: 347 STENKP 352
           S E  P
Sbjct: 177 SGELDP 182

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 27  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 86
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ +                                 
Sbjct: 87  RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVGNK DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 114 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165
Query: 227 VKQ 229
           V+Q
Sbjct: 166 VEQ 168

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 44  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 103
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ +                                 
Sbjct: 104 RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 130
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVGNK DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 131 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182
Query: 227 VKQ 229
           V+Q
Sbjct: 183 VEQ 185

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 71/115 (61%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 80  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 139
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+ K+ V     +  A  L + F+ETSAK   NV+Q F   AA +
Sbjct: 140 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 36  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 95
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ +                                 
Sbjct: 96  RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 122
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVGNK DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 123 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 174
Query: 227 VKQ 229
           V+Q
Sbjct: 175 VEQ 177

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 72  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 131
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 132 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 17  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ +                                 
Sbjct: 77  RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVGNK DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 104 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 155
Query: 227 VKQ 229
           V+Q
Sbjct: 156 VEQ 158

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 53  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 113 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 10  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 69
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ +                                 
Sbjct: 70  RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 96
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVGNK DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 97  -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 148
Query: 227 VKQ 229
           V+Q
Sbjct: 149 VEQ 151

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 46  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 105
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 106 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 17  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ +                                 
Sbjct: 77  RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVGNK DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 104 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 155
Query: 227 VKQ 229
           V+Q
Sbjct: 156 VEQ 158

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 53  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 113 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 76/112 (67%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           ++++LQ+WDTAGQERFR++  SY R +  A++VYDIT  ++++  S W+ D R     + 
Sbjct: 62  QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT 121
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +I+L+GNK DL  +R V+ EE ++ A+E  ++F+E SAK G NV+  F   A
Sbjct: 122 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK  L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 27  VGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 86
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ +                                 
Sbjct: 87  RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVGNK DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 114 -----IDRYASE---NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165
Query: 227 VKQ 229
           V+Q
Sbjct: 166 VEQ 168

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 64/227 (28%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G+ LR+ K+  LG+                       T VGK+S++ RF+ DSFD     
Sbjct: 1   GSALRELKVCLLGD-----------------------TGVGKSSIMWRFVEDSFDPNINP 37
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  F++KT+  ++   +  +WDTAG ERFR+L P Y R S  A++VYDIT   +F   
Sbjct: 38  TIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL 97
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ ++R + G   I                                        ++ +
Sbjct: 98  KNWVRELR-QHGPPSI----------------------------------------VVAI 116
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            GNK DL+D R+V   + +  A  ++ +F+ETSAK   N+ ++ +++
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 217 IETSAKAGYNVKQVRLQ-------LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
           I  +  A +  K V+ Q       +WDTAG ERFR+L P Y R S  A++VYDIT   +F
Sbjct: 35  INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETF 94
Query: 270 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
                W+ ++R      +++ + GNK DL+D R+V   + +  A  ++ +F+ETSAK   
Sbjct: 95  STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI 154
Query: 330 NVKQLFRRVAAALP 343
           N+ +LF  ++  +P
Sbjct: 155 NINELFIEISRRIP 168

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 46/212 (21%)
Query: 28  SLITRFMYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 82
            L+ R   + +D  ++  +     VGKT L+ RF    F     ATIG+DF+ KT+ +  
Sbjct: 13  GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING 72
Query: 83  RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 142
             V+LQ+WDTAGQERFRS+  SY R +   ++ YDIT   SF    +W+ ++     + V
Sbjct: 73  EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 132
Query: 143 IIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST 202
           I +L                                         VGNK DL+++R+VS 
Sbjct: 133 ITVL-----------------------------------------VGNKIDLAERREVSQ 151
Query: 203 EEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           +  E  ++  ++ ++ETSAK   NV+++ L L
Sbjct: 152 QRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 77/117 (65%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N ++V+LQ+WDTAGQERFRS+  SY R +   ++ YDIT   SF    +W+ ++     +
Sbjct: 71  NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN 130
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            VI +LVGNK DL+++R+VS +  E  ++  ++ ++ETSAK   NV++LF  +A  L
Sbjct: 131 KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 20  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  S+    +W+ +                                 
Sbjct: 80  RGAHGIIVVYDVTDQESYANVKQWLQE--------------------------------- 106
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVGNK+DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 107 -----IDRYASE---NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 158
Query: 227 VKQVRLQL 234
           V+Q  + +
Sbjct: 159 VEQAFMTM 166

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  S+    +W+ ++      +V
Sbjct: 56  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK+DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 116 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 41/190 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTS + R+  D+F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQER+R++  +Y 
Sbjct: 34  VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +++YDITN  SF+    W   ++T    +  ++L                    
Sbjct: 94  RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL-------------------- 133
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                VGNK D+ ++R V TE+G+  A++L   F E SAK   +
Sbjct: 134 ---------------------VGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172
Query: 227 VKQVRLQLWD 236
           V+Q   +L D
Sbjct: 173 VRQAFERLVD 182

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 75/115 (65%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V+LQ+WDTAGQER+R++  +Y R +   +++YDITN  SF+    W   ++T    + 
Sbjct: 70  KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA 129
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            ++LVGNK D+ ++R V TE+G+  A++L   F E SAK   +V+Q F R+  A+
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 20  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  S+    +W+ +                                 
Sbjct: 80  RGAHGIIVVYDVTDQESYANVKQWLQE--------------------------------- 106
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVGNK+DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 107 -----IDRYASE---NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 158
Query: 227 VKQVRLQL 234
           V+Q  + +
Sbjct: 159 VEQAFMTM 166

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 72/115 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  S+    +W+ ++      +V
Sbjct: 56  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENV 115
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK+DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 116 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 75/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFRS+  SY R +  A++VYDIT+  +++  + W+ D R     ++
Sbjct: 58  KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +I+L GNK DL   R+V+  E  R A+E  +MF+ETSA  G +V++ F + A
Sbjct: 118 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 169

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 47/202 (23%)
Query: 34  MYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 88
           M   +D+ ++  I     VGK+SL+ RF  ++F  +Y  TIG+DF  +T+ +    V+LQ
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 89  LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVG 148
           +WDTAGQERFR++  +Y R +   +VVYD+T+A SF    +W+                 
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWL----------------- 104
Query: 149 SIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 208
                            H+ ++  D        DV  +LVGNK D  +++ V TE+  + 
Sbjct: 105 -----------------HEINQNCD--------DVCRILVGNKNDDPERKVVETEDAYKF 139
Query: 209 AKELNVMFIETSAKAGYNVKQV 230
           A ++ +   ETSAK   NV+++
Sbjct: 140 AGQMGIQLFETSAKENVNVEEM 161

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N ++V+LQ+WDTAGQERFR++  +Y R +   +VVYD+T+A SF    +W+ ++  +   
Sbjct: 54  NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCD 112
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           DV  +LVGNK D  +++ V TE+  + A ++ +   ETSAK   NV+++F  +
Sbjct: 113 DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 41/189 (21%)
Query: 46  IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
            VGKTSL+ R+  + F++ +  T+   FL+K + +  + V L +WDTAGQERF +L P Y
Sbjct: 16  CVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 75
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            RDS  A++VYDIT+ +SF +   W+ ++R   G+++ + +V                  
Sbjct: 76  YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV------------------ 117
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                                  GNK DL  +R VS +E E  A+ +      TSAK   
Sbjct: 118 -----------------------GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNK 154
Query: 226 NVKQVRLQL 234
            ++++ L L
Sbjct: 155 GIEELFLDL 163

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V L +WDTAGQERF +L P Y RDS  A++VYDIT+ +SF +   W+ ++R   G+++
Sbjct: 53  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 112
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
            + +VGNK DL  +R VS +E E  A+ +      TSAK    +++LF
Sbjct: 113 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 41/189 (21%)
Query: 46  IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 105
            VGKTSL+ R+  + F++ +  T+   FL+K + +  + V L +WDTAGQERF +L P Y
Sbjct: 30  CVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 89
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            RDS  A++VYDIT+ +SF +   W+ ++R   G+++ + +V                  
Sbjct: 90  YRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV------------------ 131
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                                  GNK DL  +R VS +E E  A+ +      TSAK   
Sbjct: 132 -----------------------GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNK 168
Query: 226 NVKQVRLQL 234
            ++++ L L
Sbjct: 169 GIEELFLDL 177

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 70/108 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V L +WDTAGQERF +L P Y RDS  A++VYDIT+ +SF +   W+ ++R   G+++
Sbjct: 67  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
            + +VGNK DL  +R VS +E E  A+ +      TSAK    +++LF
Sbjct: 127 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 103/195 (52%), Gaps = 41/195 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L++RF  + F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQER+R++  +Y 
Sbjct: 24  VGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYY 83
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDI+ ++S+   + W+ ++R     +V + L+                   
Sbjct: 84  RGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI------------------- 124
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                 GNK+DL+  R V TEE +  A+E  ++F ETSA    N
Sbjct: 125 ----------------------GNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162
Query: 227 VKQVRLQLWDTAGQE 241
           V +   +L +T  Q+
Sbjct: 163 VDKAFEELINTIYQK 177

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 73/111 (65%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++ Q+WDTAGQER+R++  +Y R +  A++VYDI+ ++S+   + W+ ++R     +V
Sbjct: 60  KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV 119
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
            + L+GNK+DL+  R V TEE +  A+E  ++F ETSA    NV + F  +
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 42/189 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSY 105
           VGK++L++RF  D F+   ++TIG++F +K++ L++ + ++ Q+WDTAGQER+R++  +Y
Sbjct: 18  VGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAY 77
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            R +  A++VYDIT  NSF    KW+ ++R    S+++I+LVG                 
Sbjct: 78  YRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVG----------------- 120
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                                   NK+DL   R ++  +  + AK+  + FIETSA    
Sbjct: 121 ------------------------NKSDLKHLRVINDNDATQYAKKEKLAFIETSALEAT 156
Query: 226 NVKQVRLQL 234
           NV+    QL
Sbjct: 157 NVELAFHQL 165

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 74/113 (65%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N K ++ Q+WDTAGQER+R++  +Y R +  A++VYDIT  NSF    KW+ ++R    S
Sbjct: 53  NNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS 112
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +++I+LVGNK+DL   R ++  +  + AK+  + FIETSA    NV+  F ++
Sbjct: 113 NIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 6/129 (4%)
Query: 211 ELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
           E     IE S +      +++LQ+WDTAGQ RFR++  SY R +  A++VYDIT  ++++
Sbjct: 66  EFGTRIIEVSGQ------KIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYN 119
Query: 271 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330
             S W+ D R     + +I+L+GNK DL  +R V+ EE ++ A+E  ++F+E SAK G N
Sbjct: 120 HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 179
Query: 331 VKQLFRRVA 339
           V+  F   A
Sbjct: 180 VEDAFLEAA 188

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++ N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQERFR++  SY 
Sbjct: 19  VGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R S   ++VYD+T+  SF+    W+ ++     S V+ +L                    
Sbjct: 79  RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                VGNK DL DKR V  +  +  A    + F+ETSA    N
Sbjct: 119 ---------------------VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157
Query: 227 VKQVRLQL 234
           V+   L +
Sbjct: 158 VEDAFLTM 165

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 72/123 (58%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFR++  SY R S   ++VYD+T+  SF+    W+ ++     S V
Sbjct: 55  KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
           + +LVGNK DL DKR V  +  +  A    + F+ETSA    NV+  F  +A  +    S
Sbjct: 115 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174
Query: 348 TEN 350
            +N
Sbjct: 175 QQN 177

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++ N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQERFR++  SY 
Sbjct: 19  VGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R S   ++VYD+T+  SF+    W+ ++     S V+ +L                    
Sbjct: 79  RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL-------------------- 118
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                VGNK DL DKR V  +  +  A    + F+ETSA    N
Sbjct: 119 ---------------------VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157
Query: 227 VKQVRLQL 234
           V+   L +
Sbjct: 158 VEDAFLTM 165

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 72/123 (58%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFR++  SY R S   ++VYD+T+  SF+    W+ ++     S V
Sbjct: 55  KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
           + +LVGNK DL DKR V  +  +  A    + F+ETSA    NV+  F  +A  +    S
Sbjct: 115 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174
Query: 348 TEN 350
            +N
Sbjct: 175 QQN 177

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++ N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQERFR++  SY 
Sbjct: 32  VGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 91
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R S   ++VYD+T+  SF+    W+ ++     S V+ +L                    
Sbjct: 92  RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL-------------------- 131
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                VGNK DL DKR V  +  +  A    + F+ETSA    N
Sbjct: 132 ---------------------VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 170
Query: 227 VKQVRLQL 234
           V+   L +
Sbjct: 171 VEDAFLTM 178

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 68/112 (60%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFR++  SY R S   ++VYD+T+  SF+    W+ ++     S V
Sbjct: 68  KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV 127
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           + +LVGNK DL DKR V  +  +  A    + F+ETSA    NV+  F  +A
Sbjct: 128 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 179

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 19  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ +                                 
Sbjct: 79  RGAHGIIVVYDVTDQESFNNVKQWLQE--------------------------------- 105
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                ID   +E   +V  +LVG K DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 106 -----IDRYASE---NVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 157
Query: 227 VKQ 229
           V+Q
Sbjct: 158 VEQ 160

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 71/115 (61%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 55  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVG K DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 115 NKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 78/114 (68%), Gaps = 3/114 (2%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N+  ++  +WDTAGQER+ S++P Y R +T A+VV+DI+N+N+  +   W++ ++    S
Sbjct: 89  NLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI--SS 146
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           + II+LV NK D  +K QV   E ++ A++ N++FI+TSAK G N+K +F  +A
Sbjct: 147 NYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLA 199

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 74/112 (66%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAG ERFRS+  SY R +  A++VYDIT+  +++  + W+ D R     ++
Sbjct: 55  KYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           +I+L GNK DL   R+V+  E  R A+E  +MF+ETSA  G +V++ F + A
Sbjct: 115 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 166

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 41/182 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ RF  D+FD    ATIG+DF  KT+ ++    +L +WDTAGQERFR+L PSY 
Sbjct: 26  VGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY 85
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD+T  ++F +   W+++                +ET  T           
Sbjct: 86  RGAQGVILVYDVTRRDTFVKLDNWLNE----------------LETYCTR---------- 119
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         +D++  LVGNK D  + R+V   EG + A++ + +FIE SAK    
Sbjct: 120 --------------NDIVNXLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDG 164
Query: 227 VK 228
           V+
Sbjct: 165 VQ 166

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 78/127 (61%), Gaps = 5/127 (3%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDV 287
           + +L +WDTAGQERFR+L PSY R +   ++VYD+T  ++F +   W++++ T    +D+
Sbjct: 63  KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI 122
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL---PG 344
           +  LVGNK D  + R+V   EG + A++ + +FIE SAK    V+  F  +   +   PG
Sbjct: 123 VNXLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPG 181
Query: 345 MDSTENK 351
           +  +EN+
Sbjct: 182 LWESENQ 188

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 41/183 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQER+R +  +Y 
Sbjct: 16  VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDI    ++    +W+ ++R    S+++IMLV                   
Sbjct: 76  RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV------------------- 116
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                 GNK+DL   R V T+E    A++ N+ FIETSA    N
Sbjct: 117 ----------------------GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 154
Query: 227 VKQ 229
           V++
Sbjct: 155 VEE 157

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 72/111 (64%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAGQER+R +  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 52  KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 111
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +IMLVGNK+DL   R V T+E    A++ N+ FIETSA    NV++ F+ +
Sbjct: 112 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 39/185 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTSL+ +++   F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQERF+SL  ++ 
Sbjct: 19  VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   V+V+D+T  N+F     W D+            L+ +   +  +  F       
Sbjct: 79  RGADCCVLVFDVTAPNTFKTLDSWRDE-----------FLIQASPRDPENFPF------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGY 225
                              +++GNK DL + RQV+T+  +     + N+ + ETSAK   
Sbjct: 121 -------------------VVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAI 160
Query: 226 NVKQV 230
           NV+Q 
Sbjct: 161 NVEQA 165

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS---- 285
           V +Q+WDTAGQERF+SL  ++ R +   V+V+D+T  N+F     W D+   +       
Sbjct: 57  VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVA 339
           +   +++GNK DL + RQV+T+  +     + N+ + ETSAK   NV+Q F+ +A
Sbjct: 117 NFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 39/184 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTSL+ +++   F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQERF+SL  ++ 
Sbjct: 19  VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   V+V+D+T  N+F     W D+            L+ +   +  +  F       
Sbjct: 79  RGADCCVLVFDVTAPNTFKTLDSWRDE-----------FLIQASPRDPENFPF------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGY 225
                              +++GNK DL + RQV+T+  +     + N+ + ETSAK   
Sbjct: 121 -------------------VVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAI 160
Query: 226 NVKQ 229
           NV+Q
Sbjct: 161 NVEQ 164

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS---- 285
           V +Q+WDTAGQERF+SL  ++ R +   V+V+D+T  N+F     W D+   +       
Sbjct: 57  VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVA 339
           +   +++GNK DL + RQV+T+  +     + N+ + ETSAK   NV+Q F+ +A
Sbjct: 117 NFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 49/215 (22%)
Query: 19  LGEQSVGKTSLITRFMYDSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDF 73
           +G       SL+ R    S+D  ++  +     VGK++L++RF  + F+   ++TIG++F
Sbjct: 1   MGHHHHHHGSLVPR---GSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF 57
Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            ++++ ++ +T++ Q+WDTAGQER+R++  +Y R +  A++VYDI    ++    +W+ +
Sbjct: 58  ATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE 117
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +R    S+++IMLV                                         GNK+D
Sbjct: 118 LRDHADSNIVIMLV-----------------------------------------GNKSD 136
Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
           L   R V T+E    A++  + FIETSA    NV+
Sbjct: 137 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 171

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 71/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAGQER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 67  KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 126
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +IMLVGNK+DL   R V T+E    A++  + FIETSA    NV+  F+ +
Sbjct: 127 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 39/185 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTSL+ +++   F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQERF+SL  ++ 
Sbjct: 19  VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   V+V+D+T  N+F     W D+            L+ +   +  +  F       
Sbjct: 79  RGADCCVLVFDVTAPNTFKTLDSWRDE-----------FLIQASPRDPENFPF------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGY 225
                              +++GNK D  + RQV+T+  +     + N+ + ETSAK   
Sbjct: 121 -------------------VVLGNKIDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAI 160
Query: 226 NVKQV 230
           NV+Q 
Sbjct: 161 NVEQA 165

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS---- 285
           V +Q+WDTAGQERF+SL  ++ R +   V+V+D+T  N+F     W D+   +       
Sbjct: 57  VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVA 339
           +   +++GNK D  + RQV+T+  +     + N+ + ETSAK   NV+Q F+ +A
Sbjct: 117 NFPFVVLGNKIDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 46/198 (23%)
Query: 36  DSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
           D +D  ++  +     VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+W
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 91  DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
           DTAGQER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S+++IMLV   
Sbjct: 84  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV--- 140
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
                                                 GNK+DL   R V T+E    A+
Sbjct: 141 --------------------------------------GNKSDLRHLRAVPTDEARAFAE 162
Query: 211 ELNVMFIETSAKAGYNVK 228
           +  + FIETSA    NV+
Sbjct: 163 KNGLSFIETSALDSTNVE 180

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 71/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAGQER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 76  KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +IMLVGNK+DL   R V T+E    A++  + FIETSA    NV+  F+ +
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L++RF  D F+   ++TIG++F ++T+ +E++ ++ Q+WDTAG ER+R++  +Y 
Sbjct: 21  VGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDI+ ++S+   + W+ ++R     +V + L+                   
Sbjct: 81  RGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI------------------- 121
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                 GNK+DL+  R V T+E +  A E  ++F ETSA    N
Sbjct: 122 ----------------------GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDN 159
Query: 227 VKQVRLQL 234
           V +   +L
Sbjct: 160 VDKAFREL 167

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 75/118 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++ Q+WDTAG ER+R++  +Y R +  A++VYDI+ ++S+   + W+ ++R     +V
Sbjct: 57  KKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNV 116
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
            + L+GNK+DL+  R V T+E +  A E  ++F ETSA    NV + FR +  A+  M
Sbjct: 117 AVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQM 174

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 39/184 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTSL+ +++   F N Y+ATIG DFL+K + ++DR V +Q+WDTAG ERF+SL  ++ 
Sbjct: 19  VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFY 78
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   V+V+D+T  N+F     W D+            L+ +   +  +  F       
Sbjct: 79  RGADCCVLVFDVTAPNTFKTLDSWRDE-----------FLIQASPRDPENFPF------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGY 225
                              +++GNK DL + RQV+T+  +     + N+ + ETSAK   
Sbjct: 121 -------------------VVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAI 160
Query: 226 NVKQ 229
           NV+Q
Sbjct: 161 NVEQ 164

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS---- 285
           V +Q+WDTAG ERF+SL  ++ R +   V+V+D+T  N+F     W D+   +       
Sbjct: 57  VTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKAGYNVKQLFRRVA 339
           +   +++GNK DL + RQV+T+  +     + N+ + ETSAK   NV+Q F+ +A
Sbjct: 117 NFPFVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 46/198 (23%)
Query: 36  DSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
           D +D  ++  +     VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+W
Sbjct: 24  DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 83
Query: 91  DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
           DTAG ER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S+++IMLV   
Sbjct: 84  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV--- 140
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
                                                 GNK+DL   R V T+E    A+
Sbjct: 141 --------------------------------------GNKSDLRHLRAVPTDEARAFAE 162
Query: 211 ELNVMFIETSAKAGYNVK 228
           +  + FIETSA    NV+
Sbjct: 163 KNGLSFIETSALDSTNVE 180

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 70/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAG ER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 76  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +IMLVGNK+DL   R V T+E    A++  + FIETSA    NV+  F+ +
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 47/194 (24%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+S + R   + F     AT+G+DF  KT+ ++     LQLWDTAGQERFRS+  SY 
Sbjct: 39  VGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYF 98
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +++YD+T   SF    +W+D +       V IML                    
Sbjct: 99  RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML-------------------- 138
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSD------KRQVSTEEGERKAKELNVMFIETS 220
                                VGNK D+ D      ++ V    GE+ A     +F ETS
Sbjct: 139 ---------------------VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETS 177
Query: 221 AKAGYNVKQVRLQL 234
           AK G N+ +  L L
Sbjct: 178 AKDGSNIVEAVLHL 191

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIML 291
           LQLWDTAGQERFRS+  SY R +   +++YD+T   SF    +W+D +       V IML
Sbjct: 79  LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138
Query: 292 VGNKTDLSD------KRQVSTEEGERKAKELNVMFIETSAKAGYNV 331
           VGNK D+ D      ++ V    GE+ A     +F ETSAK G N+
Sbjct: 139 VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 46/198 (23%)
Query: 36  DSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
           D +D  ++  +     VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+W
Sbjct: 3   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 62
Query: 91  DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
           DTAG ER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S+++IMLV   
Sbjct: 63  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV--- 119
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
                                                 GNK+DL   R V T+E    A+
Sbjct: 120 --------------------------------------GNKSDLRHLRAVPTDEARAFAE 141
Query: 211 ELNVMFIETSAKAGYNVK 228
           +  + FIETSA    NV+
Sbjct: 142 KNGLSFIETSALDSTNVE 159

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 70/111 (63%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAG ER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 55  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 114
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +IMLVGNK+DL   R V T+E    A++  + FIETSA    NV+  F+ +
Sbjct: 115 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 71/103 (68%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 9   VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 68
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGS 149
           R +   +VVYD+T+  SF+   +W+ ++      +V  +LVG+
Sbjct: 69  RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 111

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 45  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 104
Query: 288 IIMLVGNKTDLS 299
             +LVGNK DL+
Sbjct: 105 NKLLVGNKCDLT 116

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 41/177 (23%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSY 105
           VGKT L  RF    F +  +ATIG+DF  + + ++   +++QLWDTAGQERFR S++  Y
Sbjct: 31  VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            R+    V VYD+TN  SFH    WI++ +                    HL        
Sbjct: 91  YRNVHAVVFVYDMTNMASFHSLPAWIEECK-------------------QHL-------- 123
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
                          +D+  +LVGNK DL    QV T+  ++ A   ++   ETSAK
Sbjct: 124 -------------LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 228 KQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGS 285
           +++++QLWDTAGQERFR S++  Y R+    V VYD+TN  SFH    WI++ +     +
Sbjct: 67  ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN 126
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326
           D+  +LVGNK DL    QV T+  ++ A   ++   ETSAK
Sbjct: 127 DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 41/182 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT+L++RF  + F +  + TIG++F ++T+ L    V+ Q+WDTAG ER+R++  +Y 
Sbjct: 36  VGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY 95
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++V+D+T   ++    +W+ ++     + +++ML                    
Sbjct: 96  RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML-------------------- 135
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                VGNK+DLS  R+V TEE    A+   ++F+ETSA    N
Sbjct: 136 ---------------------VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174
Query: 227 VK 228
           V+
Sbjct: 175 VE 176

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 69/109 (63%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ Q+WDTAG ER+R++  +Y R +  A++V+D+T   ++    +W+ ++     + +++
Sbjct: 74  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           MLVGNK+DLS  R+V TEE    A+   ++F+ETSA    NV+  F  V
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 41/182 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT+L++RF  + F +  + TIG++F ++T+ L    V+ Q+WDTAG ER+R++  +Y 
Sbjct: 21  VGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY 80
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++V+D+T   ++    +W+ ++     + +++ML                    
Sbjct: 81  RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML-------------------- 120
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                VGNK+DLS  R+V TEE    A+   ++F+ETSA    N
Sbjct: 121 ---------------------VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 159
Query: 227 VK 228
           V+
Sbjct: 160 VE 161

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 69/109 (63%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           V+ Q+WDTAG ER+R++  +Y R +  A++V+D+T   ++    +W+ ++     + +++
Sbjct: 59  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 118
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           MLVGNK+DLS  R+V TEE    A+   ++F+ETSA    NV+  F  V
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 167

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 80/184 (43%), Gaps = 42/184 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE F ++  +Y 
Sbjct: 16  VGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   V+V+  T+  SF   S W + V  E G                           
Sbjct: 76  RGAQACVLVFSTTDRESFEAISSWREKVVAEVG--------------------------- 108
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          D+   LV NK DL D   +  EE E  AK L + F  TS K   N
Sbjct: 109 ---------------DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 153
Query: 227 VKQV 230
           V +V
Sbjct: 154 VSEV 157

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 210 KELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 269
           K + V F+E   +   N + VRL LWDTAGQE F ++  +Y R +   V+V+  T+  SF
Sbjct: 36  KTIGVDFLERQIQV--NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESF 93
Query: 270 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 329
              S W + V  E G D+   LV NK DL D   +  EE E  AK L + F  TS K   
Sbjct: 94  EAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDL 152
Query: 330 NVKQLFRRVA 339
           NV ++F+ +A
Sbjct: 153 NVSEVFKYLA 162

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 48/204 (23%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSY 105
           VGKTSL+ R++ D +   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQERF+SL  ++
Sbjct: 19  VGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF 78
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            R +   V+VYD+TNA+SF     W D+                      H + +   +F
Sbjct: 79  YRGADCCVLVYDVTNASSFENIKSWRDEF-------------------LVHANVNSPETF 119
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK-AKEL-NVMFIETSAKA 223
                               +++GNK D  + +++ +E+  ++ AK L ++    TSAK 
Sbjct: 120 P------------------FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKN 161
Query: 224 GYNVKQVRLQLWDTAGQERFRSLI 247
             NV        DTA +E  RS +
Sbjct: 162 AINV--------DTAFEEIARSAL 177

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           K   +Q+WDTAGQERF+SL  ++ R +   V+VYD+TNA+SF     W D+       + 
Sbjct: 56  KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115
Query: 287 ---VIIMLVGNKTDLSDKRQVSTEEGERK-AKEL-NVMFIETSAKAGYNVKQLFRRVA 339
                 +++GNK D  + +++ +E+  ++ AK L ++    TSAK   NV   F  +A
Sbjct: 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 82/177 (46%), Gaps = 41/177 (23%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSY 105
           VGKT L  RF    F +  +ATIG+DF  + + ++   +++QLWDTAGQERFR S++  Y
Sbjct: 40  VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 99
Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            R+    V VYD TN  SFH    WI++ +                    HL        
Sbjct: 100 YRNVHAVVFVYDXTNXASFHSLPAWIEECK-------------------QHL-------- 132
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
                          +D+  +LVGNK DL    QV T+  ++ A   +    ETSAK
Sbjct: 133 -------------LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 228 KQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGS 285
           +++++QLWDTAGQERFR S++  Y R+    V VYD TN  SFH    WI++ +     +
Sbjct: 76  ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAN 135
Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326
           D+  +LVGNK DL    QV T+  ++ A   +    ETSAK
Sbjct: 136 DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 46/198 (23%)
Query: 36  DSFDNTYQATI-----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 90
           D +D  ++  +     VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+W
Sbjct: 6   DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
Query: 91  DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI 150
           DTAG ER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S+++I LV   
Sbjct: 66  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLV--- 122
Query: 151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 210
                                                 GNK+DL   R V T+E    A+
Sbjct: 123 --------------------------------------GNKSDLRHLRAVPTDEARAFAE 144
Query: 211 ELNVMFIETSAKAGYNVK 228
           +  + FIETSA    NV+
Sbjct: 145 KNGLSFIETSALDSTNVE 162

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 69/111 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAG ER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 58  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 117
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +I LVGNK+DL   R V T+E    A++  + FIETSA    NV+  F+ +
Sbjct: 118 VIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 41/182 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+WDTAG ER+R++  +Y 
Sbjct: 16  VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDI    ++    +W+ ++R    S+++I LV                   
Sbjct: 76  RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLV------------------- 116
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                 GNK+DL   R V T+E    A++  + FIETSA    N
Sbjct: 117 ----------------------GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 154
Query: 227 VK 228
           V+
Sbjct: 155 VE 156

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 69/111 (62%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAG ER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 52  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 111
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           +I LVGNK+DL   R V T+E    A++  + FIETSA    NV+  F+ +
Sbjct: 112 VIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 50/200 (25%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
           VGKT+ + R+  + F+  +  T+GIDF  K +    +           V LQLWDTAGQE
Sbjct: 36  VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE 95
Query: 97  RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
           RFRSL  ++ RD+   ++++D+T+  SF     W+  +                      
Sbjct: 96  RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL---------------------- 133
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
                AN++ +                 I+L+GNK DL D+R+V+  +    A +  + +
Sbjct: 134 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELADKYGIPY 175
Query: 217 IETSAKAGYNVKQVRLQLWD 236
            ETSA  G NV++    L D
Sbjct: 176 FETSAATGQNVEKAVETLLD 195

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
           +V LQLWDTAGQERFRSL  ++ RD+   ++++D+T+  SF     W+  ++      + 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
            I+L+GNK DL D+R+V+  +    A +  + + ETSA  G NV++
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           +++ LQLWDTAG ERFRSL  ++ RD+   ++++D+TN  SF     WI  ++    S+ 
Sbjct: 68  QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127
Query: 288 I-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
             I+L GNK+DL D+R V  EE    A++  + + ETSA  G N+  
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISH 174

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 50/193 (25%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
           VGKT+ + R+  + F+  +  T+GIDF  K +  + +           V LQLWDTAG E
Sbjct: 22  VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLE 81
Query: 97  RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
           RFRSL  ++ RD+   ++++D+T+  SF     W+  +                      
Sbjct: 82  RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL---------------------- 119
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
                AN++ +                 I+L+GNK DL D+R+V+  +    A++  + +
Sbjct: 120 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQ 229
            ETSA  G NV++
Sbjct: 162 FETSAATGQNVEK 174

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
           +V LQLWDTAG ERFRSL  ++ RD+   ++++D+T+  SF     W+  ++      + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
            I+L+GNK DL D+R+V+  +    A++  + + ETSA  G NV++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  +FMYD F   Y+ T   D   K + L+   V++ + DTAGQE + ++  +Y 
Sbjct: 29  VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 87
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R     + V+ IT   SF  T+ + + +                                
Sbjct: 88  RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 115
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                   +R +   +V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   N
Sbjct: 116 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167
Query: 227 VKQVRLQL 234
           V +V   L
Sbjct: 168 VDKVFFDL 175

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           ++V++ + DTAGQE + ++  +Y R     + V+ IT   SF  T+ + + + R +   +
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   NV ++F
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  +FMYD F   Y+ T   D   K + L+   V++ + DTAGQE + ++  +Y 
Sbjct: 17  VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R     + V+ IT   SF  T+ + + +                                
Sbjct: 76  RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                   +R +   +V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   N
Sbjct: 104 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 155
Query: 227 VKQVRLQL 234
           V +V   L
Sbjct: 156 VDKVFFDL 163

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           ++V++ + DTAGQE + ++  +Y R     + V+ IT   SF  T+ + + + R +   +
Sbjct: 52  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 111
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   NV ++F
Sbjct: 112 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  +FMYD F   Y+ T   D   K + L+   V++ + DTAGQE + ++  +Y 
Sbjct: 25  VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 83
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R     + V+ IT   SF  T+ + + +                                
Sbjct: 84  RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                   +R +   +V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   N
Sbjct: 112 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163
Query: 227 VKQVRLQL 234
           V +V   L
Sbjct: 164 VDKVFFDL 171

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           ++V++ + DTAGQE + ++  +Y R     + V+ IT   SF  T+ + + + R +   +
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   NV ++F
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 50/193 (25%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
           VGKT+ + R+  + F+  +  T+GIDF  K +  + +           V LQLWDTAG E
Sbjct: 22  VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLE 81
Query: 97  RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
           RFRSL  ++ RD+   ++++D+T+  SF     W+  +                      
Sbjct: 82  RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL---------------------- 119
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
                AN++ +                 I+L+GNK DL D+R+V+  +    A++  + +
Sbjct: 120 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQ 229
            ETSA  G NV++
Sbjct: 162 FETSAATGQNVEK 174

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
           +V LQLWDTAG ERFRSL  ++ RD+   ++++D+T+  SF     W+  ++      + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
            I+L+GNK DL D+R+V+  +    A++  + + ETSA  G NV++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 39/182 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ R++ + FD+    TIG++FL+K + ++   V +Q+WDTAGQERFRSL   + 
Sbjct: 22  VGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY 81
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R S   ++ + + ++ SF   S W                    +  F + +        
Sbjct: 82  RGSDCCLLTFSVDDSQSFQNLSNW--------------------KKEFIYYA-------- 113
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGY 225
                  DV+       +I+  GNKTD+ + RQVSTEE +   K+  +  + ETSAK   
Sbjct: 114 -------DVKEPESFPFVIL--GNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDST 163
Query: 226 NV 227
           NV
Sbjct: 164 NV 165

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------IDDVRTER 283
           V +Q+WDTAGQERFRSL   + R S   ++ + + ++ SF   S W        DV+   
Sbjct: 60  VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 119
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF----RRV 338
               +I+  GNKTD+ + RQVSTEE +   K+  +  + ETSAK   NV   F    RR+
Sbjct: 120 SFPFVIL--GNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
Query: 339 AA 340
            A
Sbjct: 177 LA 178

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  +FMYD F   Y+ T   D   K + L+   V++ + DTAGQE + ++  +Y 
Sbjct: 15  VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 73
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R     + V+ IT   SF  T+ + + +                                
Sbjct: 74  RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 101
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                   +R +   +V  +LVGNK+DL DKRQVS EE + +A + NV ++ETSAK   N
Sbjct: 102 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153
Query: 227 VKQVRLQL 234
           V +V   L
Sbjct: 154 VDKVFFDL 161

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           ++V++ + DTAGQE + ++  +Y R     + V+ IT   SF  T+ + + + R +   +
Sbjct: 50  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 109
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           V  +LVGNK+DL DKRQVS EE + +A + NV ++ETSAK   NV ++F
Sbjct: 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 50/193 (25%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
           VGKT+ + R+  + F+  +  T+GIDF  K +  + +           V LQLWDTAG E
Sbjct: 22  VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLE 81
Query: 97  RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
           RFRSL  ++ RD+   ++ +D+T+  SF     W   +                      
Sbjct: 82  RFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL---------------------- 119
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
                AN++ +                 I+L+GNK DL D+R+V+  +    A++  + +
Sbjct: 120 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQ 229
            ETSA  G NV++
Sbjct: 162 FETSAATGQNVEK 174

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
           +V LQLWDTAG ERFRSL  ++ RD+   ++ +D+T+  SF     W   ++      + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
            I+L+GNK DL D+R+V+  +    A++  + + ETSA  G NV++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 39/182 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ R++ + FD     TIG++FL+K + ++   V +Q+WDTAGQERFRSL   + 
Sbjct: 20  VGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY 79
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R S   ++ + + ++ SF   S W                    +  F + +        
Sbjct: 80  RGSDCCLLTFSVDDSQSFQNLSNW--------------------KKEFIYYA-------- 111
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGY 225
                  DV+       +I+  GNK D+S+ RQVSTEE +   ++  +  + ETSAK   
Sbjct: 112 -------DVKEPESFPFVIL--GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDAT 161
Query: 226 NV 227
           NV
Sbjct: 162 NV 163

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------IDDVRTER 283
           V +Q+WDTAGQERFRSL   + R S   ++ + + ++ SF   S W        DV+   
Sbjct: 58  VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 117
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF----RRV 338
               +I+  GNK D+S+ RQVSTEE +   ++  +  + ETSAK   NV   F    RRV
Sbjct: 118 SFPFVIL--GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
Query: 339 AA 340
            A
Sbjct: 175 LA 176

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 39/182 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ R++ + FD     TIG++FL+K + ++   V +Q+WDTAGQERFRSL   + 
Sbjct: 18  VGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R S   ++ + + ++ SF   S W                    +  F + +        
Sbjct: 78  RGSDCCLLTFSVDDSQSFQNLSNW--------------------KKEFIYYA-------- 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGY 225
                  DV+       +I+  GNK D+S+ RQVSTEE +   ++  +  + ETSAK   
Sbjct: 110 -------DVKEPESFPFVIL--GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDAT 159
Query: 226 NV 227
           NV
Sbjct: 160 NV 161

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------IDDVRTER 283
           V +Q+WDTAGQERFRSL   + R S   ++ + + ++ SF   S W        DV+   
Sbjct: 56  VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 115
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF----RRV 338
               +I+  GNK D+S+ RQVSTEE +   ++  +  + ETSAK   NV   F    RRV
Sbjct: 116 SFPFVIL--GNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
Query: 339 AA 340
            A
Sbjct: 173 LA 174

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 50/193 (25%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
           VGKT+ + R+  + F+  +  T+GIDF  K +  + +           V LQLWDTAG E
Sbjct: 22  VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLE 81
Query: 97  RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
           RFRSL  ++ RD+   ++ +D+T+  SF     W   +                      
Sbjct: 82  RFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL---------------------- 119
Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
                AN++ +                 I+L+GNK DL D+R+V+  +    A++  + +
Sbjct: 120 ----QANAYCENPD--------------IVLIGNKADLPDQREVNERQARELAEKYGIPY 161
Query: 217 IETSAKAGYNVKQ 229
            ETSA  G NV++
Sbjct: 162 FETSAATGQNVEK 174

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDV 287
           +V LQLWDTAG ERFRSL  ++ RD+   ++ +D+T+  SF     W   ++      + 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
            I+L+GNK DL D+R+V+  +    A++  + + ETSA  G NV++
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  +FMYD F   Y+ T   D   K + L+   V++ + DTAG E + ++  +Y 
Sbjct: 17  VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYF 75
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R     + V+ IT   SF  T+ + + +                                
Sbjct: 76  RSGEGFLCVFSITEMESFAATADFREQI-------------------------------- 103
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                   +R +   +V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   N
Sbjct: 104 --------LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 155
Query: 227 VKQVRLQL 234
           V +V   L
Sbjct: 156 VDKVFFDL 163

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           ++V++ + DTAG E + ++  +Y R     + V+ IT   SF  T+ + + + R +   +
Sbjct: 52  EEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 111
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   NV ++F
Sbjct: 112 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 39/182 (21%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ R++ + FD+    TIG++FL++ + ++ R V LQ+WDTAGQERF+SL   + 
Sbjct: 18  VGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFY 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++ + + +  SF     W                    +  F + +        
Sbjct: 78  RGADCCLLTFSVDDRQSFENLGNW--------------------QKEFIYYA-------- 109
Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGY 225
                  DV+       +++  GNK D  D RQV+TEE +    E  +  ++ETSAK   
Sbjct: 110 -------DVKDPEHFPFVVL--GNKVDKED-RQVTTEEAQTWCMENGDYPYLETSAKDDT 159
Query: 226 NV 227
           NV
Sbjct: 160 NV 161

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW------IDDVRTER 283
           V LQ+WDTAGQERF+SL   + R +   ++ + + +  SF     W        DV+   
Sbjct: 56  VTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPE 115
Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF 335
               +++  GNK D  D RQV+TEE +    E  +  ++ETSAK   NV   F
Sbjct: 116 HFPFVVL--GNKVDKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVII 289
           RL + DTAGQE F ++   Y+R     ++V+ +T+  SF +  K+   + R +   +  +
Sbjct: 54  RLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPM 113
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           +L+GNK DL  +RQV+ EEG++ A++L V ++E SAK   NV Q F
Sbjct: 114 ILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF 159

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 42/189 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  +FMYD F   Y+ T   D   K + L+   V++ + DTAG E + ++  +Y 
Sbjct: 18  VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYF 76
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
           R     ++V+ IT   SF  T+++ + + R +   D I +LV                  
Sbjct: 77  RSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV------------------ 118
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                                 VGNK+DL ++RQV  EE   KA+E  V ++ETSAK   
Sbjct: 119 ----------------------VGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRA 156
Query: 226 NVKQVRLQL 234
           NV +V   L
Sbjct: 157 NVDKVFFDL 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           ++V++ + DTAG E + ++  +Y R     ++V+ IT   SF  T+++ + + R +   D
Sbjct: 53  EEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED 112
Query: 287 VI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
            I +++VGNK+DL ++RQV  EE   KA+E  V ++ETSAK   NV ++F  +   +   
Sbjct: 113 KIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
Query: 346 DSTENK 351
             +ENK
Sbjct: 173 KMSENK 178

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 42/189 (22%)
Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  +FMYD F   Y+ T   D   K + L+   V++ + DTAG E + ++  +Y 
Sbjct: 14  VGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYF 72
Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
           R     ++V+ IT   SF  T+++ + + R +   D I +LV                  
Sbjct: 73  RSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV------------------ 114
Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                                 VGNK+DL ++RQV  EE   KA+E  V ++ETSAK   
Sbjct: 115 ----------------------VGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRA 152
Query: 226 NVKQVRLQL 234
           NV +V   L
Sbjct: 153 NVDKVFFDL 161

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSD 286
           ++V++ + DTAG E + ++  +Y R     ++V+ IT   SF  T+++ + + R +   D
Sbjct: 49  EEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED 108
Query: 287 VI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
            I +++VGNK+DL ++RQV  EE   KA+E  V ++ETSAK   NV ++F  +   +   
Sbjct: 109 KIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
Query: 346 DSTENK 351
             +ENK
Sbjct: 169 KMSENK 174

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERG 284
           + +Q  L++ DTAG E+F ++   Y+++     +VY IT  ++F+      + + R +  
Sbjct: 47  DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 106
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF 335
            DV ++LVGNK DL D+R V  E+G+  A++  N  F+E+SAK+  NV ++F
Sbjct: 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERG 284
           + +Q  L++ DTAG E+F ++   Y+++     +VY IT  ++F+      + + R +  
Sbjct: 47  DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 106
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLF 335
            DV ++LVGNK DL D+R V  E+G+  A++  N  F+E+SAK+  NV ++F
Sbjct: 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERG 284
           + +Q  L++ DTAG E+F ++   Y+++     +VY IT  ++F+      + + R +  
Sbjct: 47  DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 106
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLF 335
            DV ++LVGNK DL D+R V  E+G+  A++  N  F+E+SAK+  NV ++F
Sbjct: 107 DDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERG 284
           + +Q  L++ DTAG E+F ++   Y+++     +VY IT  ++F+      + + R +  
Sbjct: 49  DAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT 108
Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLF 335
            DV ++LVGNK DL D+R V  E+G+  A++  N  F+E+SAK+  NV ++F
Sbjct: 109 DDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYI 106
           GKTSL T F  ++F   Y+ TIG+DF  + + L  +  V LQ+WD  GQ     ++  YI
Sbjct: 18  GKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYI 77
Query: 107 RDSTVAVVVYDITNANSFHQTSKW---IDDVRTERGSDVIIMLVGS---IETNFT----- 155
             +   ++VYDITN  SF     W   +  V  E  +  ++ LVG+   +E   T     
Sbjct: 78  YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK 137
Query: 156 HLSFHHANSF 165
           HL F   N F
Sbjct: 138 HLRFCQENGF 147

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW---IDDVRTERGSD 286
           V LQ+WD  GQ     ++  YI  +   ++VYDITN  SF     W   +  V  E  + 
Sbjct: 56  VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
            ++ LVGNK DL   R +  E+  R  +E        SAK G +V   F++VAA + G+
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT----SKWIDDVRT 281
           N ++  LQL DTAGQ+ +     +Y  D    ++VY +T+  SF        K +D V  
Sbjct: 50  NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 109
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
            +   + IMLVGNK DL  +R +S EEG+  A+  N  F+E+SAK       +FRR+   
Sbjct: 110 VQ---IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
Query: 342 LPGMD 346
              MD
Sbjct: 167 AEKMD 171

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT---SKWIDDVRTERGSD 286
           V +++ DTAGQE        ++R     V+VYDIT+  SF +       +D+++  +  +
Sbjct: 76  VSMEILDTAGQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--N 132
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQLFRRVA 339
           V ++LVGNK DL   RQVSTEEGE+ A EL   F E SA  G  N+ ++F  + 
Sbjct: 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--SDVII 289
           LQ+ DT G  +F ++    I      ++VY IT+  S  +     + +   +G    + I
Sbjct: 53  LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           MLVGNK D S  R+V + E E  A+     F+ETSAK  +NVK+LF+ +
Sbjct: 113 MLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 65/216 (30%)
Query: 8   GNPLRKF-KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
           G PL ++ K+V LG + VGKTSL  +F+   F   Y  T+               +NTY 
Sbjct: 18  GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV---------------ENTY- 61
Query: 67  ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
                   SK + L      L L DTAGQ+ +  L  S+I      V+VY +T+ +SF  
Sbjct: 62  --------SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQ- 112
Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
                                  IE+ +  L   H                   + V ++
Sbjct: 113 ----------------------VIESLYQKLHEGHGK-----------------TRVPVV 133
Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 222
           LVGNK DLS +R+V   EG++ A+     F+E+SA+
Sbjct: 134 LVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDV 287
           +  L L DTAGQ+ +  L  S+I      V+VY +T+ +SF         +    G + V
Sbjct: 71  EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRV 130
Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
            ++LVGNK DLS +R+V   EG++ A+     F+E+SA+     + +F +V
Sbjct: 131 PVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVI 288
            RL + DTAGQE F ++   Y+R     ++V+ I +  SF++  K    + R +   D  
Sbjct: 57  ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP 116
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST 348
           ++LVGNK DL  +RQV   E        +V + E SAK   NV + F ++  A+      
Sbjct: 117 VVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 176
Query: 349 ENKP 352
           E  P
Sbjct: 177 ELPP 180

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT----SKWIDDVRT 281
           N ++  LQL DTAGQ+ +     +Y  D    ++VY +T+  SF        K +D V  
Sbjct: 45  NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 104
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
            +   + IMLVGNK DL  +R +S EEG+  A+  N  F+E+SAK       +FRR+
Sbjct: 105 VQ---IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT----SKWIDDVRT 281
           N ++  LQL DTAGQ+ +     +Y  D    ++VY +T+  SF        K +D V  
Sbjct: 50  NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 109
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
            +   + IMLVGNK DL  +R +S EEG+  A+  N  F+E+SAK       +FRR+
Sbjct: 110 VQ---IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT----SKWIDDVRT 281
           N ++  LQL DTAGQ+ +     +Y  D    ++VY +T+  SF        K +D V  
Sbjct: 48  NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK 107
Query: 282 ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
            +   + IMLVGNK DL  +R +S EEG+  A+  N  F+E+SAK       +FRR+
Sbjct: 108 VQ---IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E    + Y N  +++  +WDTAG E+F  L   Y  ++  A++++D+
Sbjct: 27  GEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDV 86
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIE 322
           T+  ++     W  D+      ++ I+L GNK D+ +++ +  T    RK    N+ + +
Sbjct: 87  TSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKAKTITFHRKK---NLQYYD 142
Query: 323 TSAKAGYNVKQLFRRVAAALPGMDSTE 349
            SAK+ YN ++ F  +A  L G    E
Sbjct: 143 ISAKSNYNFEKPFLWLARKLAGNPQLE 169

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS--DVII 289
           LQ+ DT G  +F ++    I      ++V+ +T+  S  +       +   +GS  D+ +
Sbjct: 58  LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           MLVGNK D   +R+V T E +  A+E    F+ETSAK  YNVK+LF+ +
Sbjct: 118 MLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L++ DTAG E+F S+   YI++    ++VY + N  SF       D + R +R   V ++
Sbjct: 53  LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           LVGNK DL  +R+VS+ EG   A+E    F+ETSAK+   V +LF  + 
Sbjct: 113 LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 6/147 (4%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E    + Y N  +++  +WDTAG E+F  L   Y  ++  A++++D+
Sbjct: 28  GEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDV 87
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIE 322
           T+  ++     W  D+      ++ I+L GNK D+ +++ +  T    RK    N+ + +
Sbjct: 88  TSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKAKTITFHRKK---NLQYYD 143
Query: 323 TSAKAGYNVKQLFRRVAAALPGMDSTE 349
            SAK+ YN ++ F  +A  L G    E
Sbjct: 144 ISAKSNYNFEKPFLWLARKLAGNPQLE 170

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 56/218 (25%)
Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           K V +G+ +VGKTSL+  +  + +   Y  T              +FDN + A + +D  
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT--------------AFDN-FSAVVSVD-- 64
Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDD 133
                   R VRLQL DTAGQ+ F  L P    ++ + ++ + + + +SF   S KW+ +
Sbjct: 65  -------GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE 117
Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +R        I+LVG+                   S   +DV+      V+I L     D
Sbjct: 118 IRC-HCPKAPIILVGT------------------QSDLREDVK------VLIEL-----D 147
Query: 194 LSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
              ++ V  E  +  A+E+    +IE SA    N+K+V
Sbjct: 148 KCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV 185

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDD 278
           SA    + + VRLQL DTAGQ+ F  L P    ++ + ++ + + + +SF   S KW+ +
Sbjct: 58  SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE 117
Query: 279 VRTERGSDVIIMLVGNKTDL------------SDKRQVSTEEGERKAKELNVM-FIETSA 325
           +R        I+LVG ++DL              ++ V  E  +  A+E+    +IE SA
Sbjct: 118 IRC-HCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176
Query: 326 KAGYNVKQLF 335
               N+K++F
Sbjct: 177 LTQKNLKEVF 186

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 93/231 (40%), Gaps = 78/231 (33%)
Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R  K V +G+ +VGKT ++  +  ++F   Y  T+              FDN        
Sbjct: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------------FDN-------- 42
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KW 130
              S  + ++  TV L LWDTAGQE +  L P   R + V ++ + + +  S+   + KW
Sbjct: 43  --FSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW 100
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           I ++R                        H+A                    V I+LVG 
Sbjct: 101 IPELR------------------------HYA------------------PGVPIILVGT 118
Query: 191 KTDLSDKRQ----------VSTEEGERKAKEL-NVMFIETSAKAGYNVKQV 230
           K DL D +Q          ++T +GE   K + + ++IE S+K   NVK V
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAV 169

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVI 288
           V L LWDTAGQE +  L P   R + V ++ + + +  S+   + KWI ++R      V 
Sbjct: 54  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVP 112
Query: 289 IMLVGNKTDLSDKRQ----------VSTEEGERKAKEL-NVMFIETSAKAGYNVKQLF 335
           I+LVG K DL D +Q          ++T +GE   K + + ++IE S+K   NVK +F
Sbjct: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 12/158 (7%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E    + Y N  +++  +WDTAG E+F  L   Y  ++  A++++D+
Sbjct: 35  GEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDV 94
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIE 322
           T+  ++     W  D+      ++ I+L GNK D+ +++ +  T    RK    N+ + +
Sbjct: 95  TSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKAKTITFHRKK---NLQYYD 150
Query: 323 TSAKAGYNVKQLFRRVAAALPG------MDSTENKPPE 354
            SAK+ YN ++ F  +A  L G      + S    PPE
Sbjct: 151 ISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPE 188

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 13/133 (9%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS- 273
           +F   SA    N   V L LWDTAGQE +  L P   R + V ++ + + +  S+   S 
Sbjct: 41  VFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK 100
Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIE 322
           KWI +++      V I+LVG K DL D +Q          ++T +GE   K +    +IE
Sbjct: 101 KWIPELK-HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159
Query: 323 TSAKAGYNVKQLF 335
            S+K+  NVK +F
Sbjct: 160 CSSKSQENVKGVF 172

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 65/219 (29%)
Query: 14  FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +++V +GEQ VGK++L   F  ++DS D+  +  ++G             ++TY+ T+ +
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE--VLG-------------EDTYERTLMV 51
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           D  S T+ L      L +W+  G+  +  L    ++     ++VY IT+  SF       
Sbjct: 52  DGESATIIL------LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASF------- 96
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                E+ S++ I L                             R  +  D+ I+LVGNK
Sbjct: 97  -----EKASELRIQLR----------------------------RARQTEDIPIILVGNK 123
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           +DL   R+VS  EG   A   +  FIETSA   +NVK++
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKEL 162

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-DVI 288
           + L +W+  G+  +  L    ++     ++VY IT+  SF + S+    +R  R + D+ 
Sbjct: 59  ILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           I+LVGNK+DL   R+VS  EG   A   +  FIETSA   +NVK+LF
Sbjct: 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 65/219 (29%)
Query: 14  FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +++V +GEQ VGK++L   F  ++DS D+  +  ++G             ++TY+ T+ +
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE--VLG-------------EDTYERTLMV 51
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           D  S T+ L      L +W+  G+  +  L    ++     ++VY IT+  SF + S+  
Sbjct: 52  DGESATIIL------LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELR 103
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
             +R  R ++                                        D+ I+LVGNK
Sbjct: 104 IQLRRARQTE----------------------------------------DIPIILVGNK 123
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           +DL   R+VS  EG   A   +  FIETSA   +NVK++
Sbjct: 124 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 162

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283
           G +   + L +W+  G+  +  L    ++     ++VY IT+  SF + S+    +R  R
Sbjct: 53  GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 110
Query: 284 GS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
            + D+ I+LVGNK+DL   R+VS  EG   A   +  FIETSA   +NVK+LF
Sbjct: 111 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 65/219 (29%)
Query: 14  FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +++V +GEQ VGK++L   F  ++DS D+  +  ++G             ++TY+ T+ +
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE--VLG-------------EDTYERTLMV 82
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           D  S T+ L      L +W+  G+  +  L    ++     ++VY IT+  SF       
Sbjct: 83  DGESATIIL------LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASF------- 127
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                E+ S++ I L                             R  +  D+ I+LVGNK
Sbjct: 128 -----EKASELRIQLR----------------------------RARQTEDIPIILVGNK 154
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           +DL   R+VS  EG   A   +  FIETSA   +NVK++
Sbjct: 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283
           G +   + L +W+  G+  +  L    ++     ++VY IT+  SF + S+    +R  R
Sbjct: 84  GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 141
Query: 284 GS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
            + D+ I+LVGNK+DL   R+VS  EG   A   +  FIETSA   +NVK+LF  +
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 68/234 (29%)
Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           M+S+   G P  +FKLV +G+   G T                    GKT+ + R +   
Sbjct: 4   MASAAQ-GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGE 39
Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           F+  Y AT+G++      +     ++  +WDTAGQE+F  L   Y   +  A++++D+T+
Sbjct: 40  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99
Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
             ++     W  D+                                        VR    
Sbjct: 100 RVTYKNVPNWHRDL----------------------------------------VRV--C 117
Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            ++ I+L GNK D+ D++  +      + K  N+ + + SAK+ YN ++  L L
Sbjct: 118 ENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 169

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++++D+
Sbjct: 38  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 97
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 98  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 154
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 155 SAKSNYNFEKPFLWLARKLIGDPNLE 180

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 65/219 (29%)
Query: 14  FKLVFLGEQSVGKTSLITRF--MYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +++V +GEQ VGK++L   F  ++DS D+  +  ++G             ++TY+ T+ +
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE--VLG-------------EDTYERTLMV 51
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           D  S T+ L      L +W+  G+  +  L    ++     ++VY IT+  SF       
Sbjct: 52  DGESATIIL------LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASF------- 96
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                E+ S++ I L                             R  +  D+ I+LVGNK
Sbjct: 97  -----EKASELRIQLR----------------------------RARQTEDIPIILVGNK 123
Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           +DL   R+VS  EG   A   +  FIETSA   +NVK++
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-DVI 288
           + L +W+  G+  +  L    ++     ++VY IT+  SF + S+    +R  R + D+ 
Sbjct: 59  ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           I+LVGNK+DL   R+VS  EG   A   +  FIETSA   +NVK+LF
Sbjct: 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSD 286
           ++V L LWDTAGQE +  L P    DS V ++ + I   +S      KWI +V       
Sbjct: 56  RRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQG 114
Query: 287 VIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVG K DL +  Q            V+++EG+  A ++    + E SAK GY V++
Sbjct: 115 VPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVRE 174
Query: 334 LF 335
           +F
Sbjct: 175 VF 176

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++++D+
Sbjct: 33  GEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 93  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G P  +FKLV +G+   G T                    GKT+ + R +   F+  Y A
Sbjct: 5   GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           T+G++      +     ++  +WDTAGQE+F  L   Y   +  A++++D+T+  ++   
Sbjct: 42  TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W  D+                                        VR     ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            GNK D+ D++  +      + K  N+ + + SAK+ YN ++  L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++++D+
Sbjct: 33  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 93  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G P  +FKLV +G+   G T                    GKT+ + R +   F+  Y A
Sbjct: 5   GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           T+G++      +     ++  +WDTAGQE+F  L   Y   +  A++++D+T+  ++   
Sbjct: 42  TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W  D+                                        VR     ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            GNK D+ D++  +      + K  N+ + + SAK+ YN ++  L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++++D+
Sbjct: 33  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 93  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G P  +FKLV +G+   G T                    GKT+ + R +   F+  Y A
Sbjct: 5   GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           T+G++      +     ++  +WDTAGQE+F  L   Y   +  A++++D+T+  ++   
Sbjct: 42  TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W  D+                                        VR     ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            GNK D+ D++  +      + K  N+ + + SAK+ YN ++  L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++++D+
Sbjct: 33  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 93  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           ++  L ++D   Q+  R L    +      V+VY +T+  SF + S+    +R  R +D 
Sbjct: 47  EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 106
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           V I+LVGNK+DL   R+VS +EG   A   +  FIETSA   +NV+ LF  V
Sbjct: 107 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           ++  L ++D   Q+  R L    +      V+VY +T+  SF + S+    +R  R +D 
Sbjct: 52  EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 111
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           V I+LVGNK+DL   R+VS +EG   A   +  FIETSA   +NV+ LF  V
Sbjct: 112 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++++D+
Sbjct: 33  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 93  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           ++  L ++D   Q+  R L    +      V+VY +T+  SF + S+    +R  R +D 
Sbjct: 52  EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 111
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           V I+LVGNK+DL   R+VS +EG   A   +  FIETSA   +NV+ LF  V
Sbjct: 112 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 249 SYIRDSTVAVVVYDITNANSFHQTSKW-IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE 307
           S ++  +  V+VY I +  SF   S+  I   RT +   V I+LVGNK DL+  R+VS E
Sbjct: 73  SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE 132
Query: 308 EGERKAKELNVMFIETSAKAGYNVKQLF 335
           EG   A   +  FIETSA   +NV +LF
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 27/150 (18%)
Query: 2   SSSGDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           S +G+   P +R  K+V +G+   GKTSL+  F   +F  +Y  T+        R+M + 
Sbjct: 22  SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV------FERYMVN- 74
Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
                            + ++ + V L +WDTAGQ+ +  L P +  D++V ++ +D+T+
Sbjct: 75  -----------------LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS 117
Query: 121 ANSFHQT-SKWIDDVRTERGSDVIIMLVGS 149
            NSF    ++W  +V       V I++VG 
Sbjct: 118 PNSFDNIFNRWYPEV-NHFCKKVPIIVVGC 146

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 15/126 (11%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
           K V L +WDTAGQ+ +  L P +  D++V ++ +D+T+ NSF    ++W  +V       
Sbjct: 80  KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKK 138
Query: 287 VIIMLVGNKTDL-SDK-----------RQVSTEEGERKAKELN-VMFIETSAKAGYNVKQ 333
           V I++VG KTDL  DK             V+   G+  A+ +  V ++E SA+   NV  
Sbjct: 139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHA 198
Query: 334 LFRRVA 339
           +F+  A
Sbjct: 199 VFQEAA 204

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 10/157 (6%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++++D+
Sbjct: 26  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 85
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 86  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 142
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTEN------KPPE 354
           SAK+ YN ++ F  +A  L G  + E        PPE
Sbjct: 143 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 179

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++++D+
Sbjct: 38  GESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 97
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 98  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 154
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 155 SAKSNYNFEKPFLWLARKLIGDPNLE 180

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++++D+
Sbjct: 33  GEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 93  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N+ SF   + + + + R +   DV ++
Sbjct: 71  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL   R V T++    AK   + FIETSAK    V+  F
Sbjct: 131 LVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 67/227 (29%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G P  +FKLV +G+   G T                    GKT+ + R +   F+  Y A
Sbjct: 5   GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           T+G++      +     ++  +WDTAGQE+F  L   Y   +  A++ +D+T+  ++   
Sbjct: 42  TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W  D+                                        VR     ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            GNK D+ D++  +      + K  N+ + + SAK+ YN ++  L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE+F  L   Y   +  A++ +D+
Sbjct: 33  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 93  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 27/146 (18%)
Query: 5   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
           G+F   +RK KLV +G+ + GKT L+  F  D F   Y  T+              F+N 
Sbjct: 1   GEFMAAIRK-KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN- 44
Query: 65  YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
           Y A I +D          + V L LWDTAGQE +  L P    D+ V ++ + I + +S 
Sbjct: 45  YVADIEVD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL 95
Query: 125 HQ-TSKWIDDVRTERGSDVIIMLVGS 149
                KW  +V+     +V I+LVG+
Sbjct: 96  ENIPEKWTPEVK-HFCPNVPIILVGN 120

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 54  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 112
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 113 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 172
Query: 334 LF 335
           +F
Sbjct: 173 VF 174

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 67/227 (29%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G P  +FKLV +G+   G T                    GKT+ + R +   F+  Y A
Sbjct: 5   GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           T+G++      +     ++  +WDTAGQE++  L   Y   +  A++++D+T+  ++   
Sbjct: 42  TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W  D+                                        VR     ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            GNK D+ D++  +      + K  N+ + + SAK+ YN ++  L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAGQE++  L   Y   +  A++++D+
Sbjct: 33  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 93  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF     + + + R +   DV ++
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK+DL   R V T++ +  A+   + FIETSAK    V   F
Sbjct: 114 LVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF     + + + R +   DV ++
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK+DL   R V T++ +  A+   + FIETSAK    V   F
Sbjct: 114 LVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF     + + + R +   DV ++
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK+DL   R V T++ +  A+   + FIETSAK    V   F
Sbjct: 114 LVGNKSDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 27/143 (18%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G+P +  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A
Sbjct: 1   GSP-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSA 44
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
            + +D          + V L LWDTAGQE +  L P     + V+++ + + +  SF   
Sbjct: 45  NVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV 95
Query: 128 -SKWIDDVRTERGSDVIIMLVGS 149
            +KW  +VR     +  I+LVG+
Sbjct: 96  RAKWYPEVR-HHCPNTPIILVGT 117

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V+++ + + +  SF  
Sbjct: 35  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 95  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 153
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 154 VKYLECSALTQRGLKTVF 171

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 51  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL              +  V +EEG   A  ++   ++E SAK    V++
Sbjct: 110 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 169
Query: 334 LFRRVAAALPGMDSTENK 351
           +F     A  G+   +NK
Sbjct: 170 VFEMATRA--GLQVRKNK 185

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF     + + + R +   DV ++
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL   R V T++ +  A+   + FIETSAK    V   F
Sbjct: 114 LVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 157

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 5   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
           G  G+   + KLV +G+ + GKT L+  F  D F   Y  T+              F+N 
Sbjct: 1   GPLGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN- 45
Query: 65  YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
           Y A I +D          + V L LWDTAGQE +  L P    D+ V ++ + I + +S 
Sbjct: 46  YVADIEVD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL 96
Query: 125 HQ-TSKWIDDVRTERGSDVIIMLVGS 149
                KW  +V+     +V I+LVG+
Sbjct: 97  ENIPEKWTPEVK-HFCPNVPIILVGN 121

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 55  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 113
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 114 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 173
Query: 334 LF 335
           +F
Sbjct: 174 VF 175

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 5   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 49
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V+++ + + +  SF    +K
Sbjct: 50  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 100
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR     +  I+LVG+
Sbjct: 101 WYPEVR-HHCPNTPIILVGT 119

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V+++ + + +  SF  
Sbjct: 37  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 96
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 97  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 155
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 156 VKYLECSALTQRGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V+++ + + +  SF    +K
Sbjct: 46  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR     +  I+LVG+
Sbjct: 97  WYPEVR-HHCPNTPIILVGT 115

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V+++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 26/147 (17%)
Query: 4   SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN 63
            G  G  ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN
Sbjct: 1   GGGSGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV--------------FDN 46
Query: 64  TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS 123
            Y A + +D          + V L LWDTAGQE +  L P     + V ++ + + +  S
Sbjct: 47  -YSANVMVD---------SKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 96
Query: 124 FHQT-SKWIDDVRTERGSDVIIMLVGS 149
           +    +KW  +VR    S  II LVG+
Sbjct: 97  YENVRAKWFPEVRHHCPSTPII-LVGT 122

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  S+  
Sbjct: 40  IPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYEN 99
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR    S  II LVG K DL D +             ++  +G   AKE++ 
Sbjct: 100 VRAKWFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDS 158
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 159 VKYLECSALTQRGLKTVF 176

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE F ++   Y+R     ++VY +T+  SF    ++   + R +      ++
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK-AGYNVKQLFR 336
           LV NK DL   R+V+ ++G+  A + N+ +IETSAK    NV + F 
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE F ++   Y+R     ++VY +T+  SF    ++   + R +      ++
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK-AGYNVKQLFR 336
           LV NK DL   R+V+ ++G+  A + N+ +IETSAK    NV + F 
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE F ++   Y+R     ++VY +T+  SF    ++   + R +      ++
Sbjct: 68  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK-AGYNVKQLF 335
           LV NK DL   R+V+ ++G+  A + N+ +IETSAK    NV + F
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE F ++   Y+R     ++VY +T+  SF    ++   + R +      ++
Sbjct: 63  LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 122
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK-AGYNVKQLFR 336
           LV NK DL   R+V+ ++G+  A + N+ +IETSAK    NV + F 
Sbjct: 123 LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 169

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 71  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 129
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL              +  V +EEG   A  ++   ++E SAK    V++
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 189
Query: 334 LF 335
           +F
Sbjct: 190 VF 191

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 60  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 120 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN 350
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F  +   +      + 
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKL 171
Query: 351 KPPED 355
            PP++
Sbjct: 172 NPPDE 176

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 59  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 119 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 162

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 52  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 110
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 111 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 170
Query: 334 LF 335
           +F
Sbjct: 171 VF 172

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 49  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 107
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 108 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 167
Query: 334 LF 335
           +F
Sbjct: 168 VF 169

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 53  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 111
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 112 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 171
Query: 334 LF 335
           +F
Sbjct: 172 VF 173

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 51  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 110 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
           +F
Sbjct: 170 VF 171

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 118 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 118 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 52  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 110
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 111 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 170
Query: 334 LF 335
           +F
Sbjct: 171 VF 172

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 26/137 (18%)
Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +D 
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 47
Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
                    + V L LWDTAGQE +  L P     + V+++ + + +  SF    +KW  
Sbjct: 48  --------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYP 99
Query: 133 DVRTERGSDVIIMLVGS 149
           +VR     +  I+LVG+
Sbjct: 100 EVR-HHCPNTPIILVGT 115

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V+++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 49  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 107
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 108 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 167
Query: 334 LF 335
           +F
Sbjct: 168 VF 169

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAG E+F  L   Y   +  A++++D+
Sbjct: 29  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDV 88
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 89  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 145
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 146 SAKSNYNFEKPFLWLARKLIGDPNLE 171

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 82/239 (34%)
Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R  K V +G+ +VGKT ++  +  ++F   Y  T+              FDN        
Sbjct: 5   RFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV--------------FDN-------- 42
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFHQTSKW 130
              S  + ++  TV L LWDTAGQE +  L P SY                         
Sbjct: 43  --FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY------------------------- 75
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
                  RG+DV ++        F+ +S     + H+  KW+ +++      + I+LVG 
Sbjct: 76  -------RGADVFLL-------AFSLISKASYENIHK--KWLPELK-HYAPGIPIVLVGT 118
Query: 191 KTDLSDKRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQVRLQLWDTA 238
           K DL D +Q          ++T +GE   K +  V ++E S+K   NVK V    +DTA
Sbjct: 119 KLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAV----FDTA 173

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVI 288
           V L LWDTAGQE +  L P   R + V ++ + + +  S+     KW+ +++      + 
Sbjct: 54  VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIP 112
Query: 289 IMLVGNKTDLSDKRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
           I+LVG K DL D +Q          ++T +GE   K +  V ++E S+K   NVK +F
Sbjct: 113 IVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 71  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPN 129
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL              +  V +EEG   A  ++   ++E SAK    V++
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 189
Query: 334 LF 335
           +F
Sbjct: 190 VF 191

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK+DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 53  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 111
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 112 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 171
Query: 334 LF 335
           +F
Sbjct: 172 VF 173

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 67/227 (29%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G P  +FKLV +G+   G T                    GKT+ + R +   F+  Y A
Sbjct: 5   GEPQVQFKLVLVGD---GGT--------------------GKTTFVKRHLTGEFEKKYVA 41
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           T+G++      +     ++  +WDTAG E+F  L   Y   +  A++++D+T+  ++   
Sbjct: 42  TLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W  D+                                        VR     ++ I+L
Sbjct: 102 PNWHRDL----------------------------------------VRV--CENIPIVL 119
Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            GNK D+ D++  +      + K  N+ + + SAK+ YN ++  L L
Sbjct: 120 CGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWL 164

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAG E+F  L   Y   +  A++++D+
Sbjct: 33  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDV 92
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 93  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 149
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTEN------KPPE 354
           SAK+ YN ++ F  +A  L G  + E        PPE
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPE 186

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 51  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 110 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
           +F
Sbjct: 170 VF 171

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 51  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 110 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
           +F
Sbjct: 170 VF 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 53  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 111
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 112 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 171
Query: 334 LF 335
           +F
Sbjct: 172 VF 173

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 51  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 110 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
           +F
Sbjct: 170 VF 171

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 5   GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT 64
           G  G+P+RK KLV +G+ + GKT L+     D F   Y  T+              F+N 
Sbjct: 1   GAMGSPIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV--------------FEN- 44
Query: 65  YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF 124
           Y A I +D          + V L LWDTAG E +  L P    D+ V ++ + I + +S 
Sbjct: 45  YVADIEVD---------GKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSL 95
Query: 125 HQ-TSKWIDDVRTERGSDVIIMLVGS 149
                KW  +V+     +V I+LVG+
Sbjct: 96  ENIPEKWTPEVK-HFCPNVPIILVGN 120

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAG E +  L P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 54  KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 112
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V  EEG   A  +    ++E SAK    V++
Sbjct: 113 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 172
Query: 334 LF 335
           +F
Sbjct: 173 VF 174

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + + V L LWDTAGQE +  L P   R + + V+ + + +  S+  
Sbjct: 39  IPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYEN 98
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--------VSTEEGERKAKELN-VMFI 321
              KW+ ++R     +V I+LVG K DL D +         +++ +GE   K++    +I
Sbjct: 99  VLKKWMPELR-RFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYI 157
Query: 322 ETSAKAGYNVKQLF 335
           E S+K   NVK +F
Sbjct: 158 ECSSKTQQNVKAVF 171

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 205 GERKAKELNVMFIETSAKAGY-NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 263
           GE + K +  + +E      + N   ++  +WDTAG E+F  L   Y   +  A++++D+
Sbjct: 35  GEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDV 94
Query: 264 TNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 323
           T+  ++     W  D+      ++ I+L GNK D+ D++  +      + K  N+ + + 
Sbjct: 95  TSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDI 151
Query: 324 SAKAGYNVKQLFRRVAAALPGMDSTE 349
           SAK+ YN ++ F  +A  L G  + E
Sbjct: 152 SAKSNYNFEKPFLWLARKLIGDPNLE 177

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAG E + ++   Y+R     + V+ I N  SF     + + + R +   DV ++
Sbjct: 71  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL   R V T++ +  A+   + FIETSAK    V   F
Sbjct: 131 LVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAF 174

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 26/144 (18%)
Query: 7   FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
           F   ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y 
Sbjct: 16  FQGTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YS 60
Query: 67  ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
           A + +D          + V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 61  ANVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 111
Query: 127 T-SKWIDDVRTERGSDVIIMLVGS 149
             +KW  +VR     +  I+LVG+
Sbjct: 112 VRAKWYPEVR-HHCPNTPIILVGT 134

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 52  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 111
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 112 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 170
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 171 VKYLECSALTQRGLKTVF 188

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +K
Sbjct: 46  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR     +  I+LVG+
Sbjct: 97  WYPEVR-HHCPNTPIILVGT 115

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +K
Sbjct: 46  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR     +  I+LVG+
Sbjct: 97  WYPEVR-HHCPNTPIILVGT 115

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGN+ DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNRCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +K
Sbjct: 46  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR     +  I+LVG+
Sbjct: 97  WYPEVR-HHCPNTPIILVGT 115

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +K
Sbjct: 46  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR     +  I+LVG+
Sbjct: 97  WYPEVR-HHCPNTPIILVGT 115

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +K
Sbjct: 46  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR     +  I+LVG+
Sbjct: 97  WYPEVR-HHCPNTPIILVGT 115

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 28/149 (18%)
Query: 2   SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
            SSG  G  ++  K V +G+ +VGK  L+  +  ++F   Y  T+              F
Sbjct: 1   GSSGSSG--MQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV--------------F 44
Query: 62  DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
           DN Y A + +D          + V L LWDTAGQE +  L P     + V ++ + + + 
Sbjct: 45  DN-YSANVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 94
Query: 122 NSFHQT-SKWIDDVRTERGSDVIIMLVGS 149
            SF    +KW  +VR     +  I+LVG+
Sbjct: 95  ASFENVRAKWYPEVR-HHCPNTPIILVGT 122

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 40  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 99
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 100 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 158
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 159 VKYLECSALTQRGLKTVF 176

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V ++ + + +  S+    +K
Sbjct: 46  VD---------SKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR    S  II LVG+
Sbjct: 97  WFPEVRHHCPSTPII-LVGT 115

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  S+  
Sbjct: 33  IPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR    S  II LVG K DL D +             ++  +G   AKE++ 
Sbjct: 93  VRAKWFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDS 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DT GQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +D 
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 199
Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
                    + V L LWDTAG E +  L P     + V ++ + + +  SFH   +KW  
Sbjct: 200 --------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP 251
Query: 133 DVRTERGSDVIIMLVGS 149
           +VR     +  I+LVG+
Sbjct: 252 EVR-HHCPNTPIILVGT 267

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAG E +  L P     + V ++ + + +  SFH 
Sbjct: 185 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHH 244
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 245 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 303
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 304 VKYLECSALTQRGLKTVF 321

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 94/234 (40%), Gaps = 61/234 (26%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 3   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 47
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
           +D          + V L LWDTAGQE +  L P          + Y  T   ++ +    
Sbjct: 48  VD---------GKPVNLGLWDTAGQEDYDRLRP----------LSYPQTVGETYGK---- 84
Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT-SKWIDDVRTERGSDVIIMLVG 189
             D+ T RG D  I      +      S     SF    +KW  +VR     +  I+LVG
Sbjct: 85  --DI-TSRGKDKPIA-----DVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVG 135
Query: 190 NKTDLSDKR------------QVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
            K DL D +             ++  +G   AKE+  V ++E SA     +K V
Sbjct: 136 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 189

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 34/157 (21%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP---------SYIRDST------- 255
           +  +F   SA    + K V L LWDTAGQE +  L P         +Y +D T       
Sbjct: 35  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKP 94
Query: 256 ---VAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR--------- 302
              V ++ + + +  SF    +KW  +VR     +  I+LVG K DL D +         
Sbjct: 95  IADVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEK 153
Query: 303 ---QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
               ++  +G   AKE+  V ++E SA     +K +F
Sbjct: 154 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 190

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +D 
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 199
Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
                    + V L LWDTAG E +  L P     + V ++ + + +  SFH   +KW  
Sbjct: 200 --------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP 251
Query: 133 DVRTERGSDVIIMLVGS 149
           +VR     +  I+LVG+
Sbjct: 252 EVR-HHCPNTPIILVGT 267

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAG E +  L P     + V ++ + + +  SFH 
Sbjct: 185 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHH 244
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 245 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 303
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 304 VKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +D 
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 199
Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
                    + V L LWDTAG E +  L P     + V ++ + + +  SFH   +KW  
Sbjct: 200 --------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYP 251
Query: 133 DVRTERGSDVIIMLVGS 149
           +VR     +  I+LVG+
Sbjct: 252 EVR-HHCPNTPIILVGT 267

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAG E +  L P     + V ++ + + +  SFH 
Sbjct: 185 IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHH 244
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 245 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 303
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 304 VKYLECSALTQRGLKTVF 321

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAG+E + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +
Sbjct: 2   QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMV 46
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
           D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +KW
Sbjct: 47  D---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
Query: 131 IDDVRTERGSDVIIMLVGS 149
             +VR     +  I+LVG+
Sbjct: 98  YPEVR-HHCPNTPIILVGT 115

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMV 73
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
           D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +KW
Sbjct: 74  D---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124
Query: 131 IDDVRTERGSDVIIMLVGS 149
             +VR     +  I+LVG+
Sbjct: 125 YPEVR-HHCPNTPIILVGT 142

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTA 238
           +G  +  ++VG+         +S        + +  +F   SA    + K V L LWDTA
Sbjct: 27  QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTD 297
           GQE +  L P     + V ++ + + +  SF    +KW  +VR     +  I+LVG K D
Sbjct: 87  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 145
Query: 298 LSDKR------------QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
           L D +             ++  +G   AKE+  V ++E SA     +K +F
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 2   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 46
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +K
Sbjct: 47  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 97
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR        I+LVG+
Sbjct: 98  WYPEVR-HHCPHTPILLVGT 116

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 34  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 93
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKEL-N 317
             +KW  +VR        I+LVG K DL D +             ++  +G   A+E+ +
Sbjct: 94  VRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGS 152
Query: 318 VMFIETSAKAGYNVKQLFRRVAAALPG 344
           V ++E SA     +K +F     A+ G
Sbjct: 153 VKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DT GQE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 2   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 46
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +K
Sbjct: 47  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 97
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR        I+LVG+
Sbjct: 98  WYPEVR-HHCPHTPILLVGT 116

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 34  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 93
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKEL-N 317
             +KW  +VR        I+LVG K DL D +             ++  +G   A+E+ +
Sbjct: 94  VRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGS 152
Query: 318 VMFIETSAKAGYNVKQLFRRVAAALPG 344
           V ++E SA     +K +F     A+ G
Sbjct: 153 VKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAG E + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 60/115 (52%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII 289
           ++  +WDTAGQE+   L   Y   ++ A++ +D+T+  +    ++W+ + +   G++  I
Sbjct: 61  IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI 120
Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
           ++  NK D+ +++++S +      K  N  + E SAK  +N    F  +A    G
Sbjct: 121 VVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +K
Sbjct: 46  VD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR        I+LVG+
Sbjct: 97  WYPEVR-HHCPHTPILLVGT 115

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKEL-N 317
             +KW  +VR        I+LVG K DL D +             ++  +G   A+E+ +
Sbjct: 93  VRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGS 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +
Sbjct: 12  QAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV--------------FDN-YSANVMV 56
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
           D          + V L LWDTAGQE +  L P     + V ++ + + +  SF    +KW
Sbjct: 57  D---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 107
Query: 131 IDDVRTERGSDVIIMLVGS 149
             +VR     +  I+LVG+
Sbjct: 108 YPEVR-HHCPNTPIILVGT 125

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF  
Sbjct: 43  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 102
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 103 VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 161
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 162 VKYLECSALTQRGLKTVF 179

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAGQE   ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 26/139 (18%)
Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +
Sbjct: 8   QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMV 52
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
           D          + V L LWDTAGQE +  L P     + V ++ + + +  S+    +KW
Sbjct: 53  D---------SKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKW 103
Query: 131 IDDVRTERGSDVIIMLVGS 149
             +VR    S  II LVG+
Sbjct: 104 FPEVRHHCPSTPII-LVGT 121

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  S+  
Sbjct: 39  IPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYEN 98
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR    S  II LVG K DL D +             ++  +G   AKE++ 
Sbjct: 99  VRAKWFPEVRHHCPSTPII-LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDS 157
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 158 VKYLECSALTQRGLKTVF 175

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +  L P    D+ V ++ + + + +S      KW+ +V+     +
Sbjct: 71  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPN 129
Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-------------MFIETSAKAGYNVKQ 333
           V I+LV NK DL     V TE    K + +                ++E SAK    V++
Sbjct: 130 VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVRE 189
Query: 334 LF 335
           +F
Sbjct: 190 VF 191

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
           KQ  L L+DTAGQE +  L P     + V ++ + + N  SF     +W+ +++ E   +
Sbjct: 64  KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPN 122
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQ 333
           V  +L+G + DL D            ++ +  E+G++ AKE+    ++E SA     +K 
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182
Query: 334 LFRRVAAAL 342
           +F     A+
Sbjct: 183 VFDEAIIAI 191

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAG E + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 58  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 118 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTA QE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 249 SYIRDSTVA-----VVVYDITNANSFHQTSKWIDDVRTERGS-DVIIMLVGNKTDLSDKR 302
            ++RD  +      ++V+ +T+  SF +  + +  +R  R   D+ ++LVGNK+DL+  R
Sbjct: 87  GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR 146
Query: 303 QVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           +VS EEG   A  L+   IETSA   +N ++LF
Sbjct: 147 EVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAG E + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTA QE + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKXDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAG E + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 26/143 (18%)
Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G  ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A
Sbjct: 1   GPHMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSA 45
Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
            + +D          + V L LWDTAG E +  L P     + V ++ + + +  SF   
Sbjct: 46  NVMVD---------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENV 96
Query: 128 -SKWIDDVRTERGSDVIIMLVGS 149
            +KW  +VR     +  I+LVG+
Sbjct: 97  RAKWYPEVR-HHCPNTPIILVGT 118

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAG E +  L P     + V ++ + + +  SF  
Sbjct: 36  IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 95
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 96  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 154
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 155 VKYLECSALTQRGLKTVF 172

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAG E + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL 316
           ++V+ +T+  SF +  + +  +R  R   D+ ++LVGNK+DL+  R+VS EEG   A  L
Sbjct: 80  LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 139
Query: 317 NVMFIETSAKAGYNVKQLF 335
           +   IETSA   +N ++LF
Sbjct: 140 SCKHIETSAALHHNTRELF 158

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAG E + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIM 290
           L + DTAG E + ++   Y+R     + V+ I N  SF    ++ + + R +   DV ++
Sbjct: 53  LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 291 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
           LVGNK DL+  R V + + +  A+   + +IETSAK    V+  F
Sbjct: 113 LVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 258 VVVYDITNANSFHQTSKWIDDVRTERGS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL 316
           ++V+ +T+  SF +  + +  +R  R   D+ ++LVGNK+DL+  R+VS EEG   A  L
Sbjct: 90  LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 149
Query: 317 NVMFIETSAKAGYNVKQLF 335
           +   IETSA   +N ++LF
Sbjct: 150 SCKHIETSAALHHNTRELF 168

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + 
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVM 45
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SK 129
           +D          + V L LWDTAG E +  L P     + V ++ + + +  SF    +K
Sbjct: 46  VD---------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 96
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +VR     +  I+LVG+
Sbjct: 97  WYPEVR-HHCPNTPIILVGT 115

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAG E +  L P     + V ++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           +RK KLV +G+ + GKT L+  F  D F   Y  T+              F+N Y A I 
Sbjct: 4   IRK-KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV--------------FEN-YVADIE 47
Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSK 129
           +D          + V L LWDTAGQE +    P    D+ V ++ + I + +S      K
Sbjct: 48  VD---------GKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEK 98
Query: 130 WIDDVRTERGSDVIIMLVGS 149
           W  +V+     +V I+LVG+
Sbjct: 99  WTPEVK-HFCPNVPIILVGN 117

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           KQV L LWDTAGQE +    P    D+ V ++ + I + +S      KW  +V+     +
Sbjct: 51  KQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPN 109
Query: 287 VIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 333
           V I+LVGNK DL +            +  V   EG   A  +    ++E SAK    V++
Sbjct: 110 VPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVRE 169
Query: 334 LF 335
           +F
Sbjct: 170 VF 171

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTA 238
           +G  +  ++VG+         +S        + +  +F   SA    + K V L LWDTA
Sbjct: 27  QGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTD 297
           GQE +  L P     + V ++ + + +  SF    +KW  +VR     +  I+LVG K D
Sbjct: 87  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 145
Query: 298 LSDKR------------QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
           L D +             ++  +G   AKE+  V ++E SA     +K +F
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 26/137 (18%)
Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +D 
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMVD- 47
Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWID 132
                    + V L LWDTAG E +  L P     + V ++ + + +  SF    +KW  
Sbjct: 48  --------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYP 99
Query: 133 DVRTERGSDVIIMLVGS 149
           +VR     +  I+LVG+
Sbjct: 100 EVR-HHCPNTPIILVGT 115

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAG E +  L P     + V ++ + + +  SF  
Sbjct: 33  IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92
Query: 272 T-SKWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D +             ++  +G   AKE+  
Sbjct: 93  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 151
Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 152 VKYLECSALTQRGLKTVF 169

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 26/139 (18%)
Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A + +
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSANVMV 73
Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKW 130
           D          + V L LWDTAG E +  L P     + V ++ + + +  SF    +KW
Sbjct: 74  D---------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124
Query: 131 IDDVRTERGSDVIIMLVGS 149
             +VR     +  I+LVG+
Sbjct: 125 YPEVR-HHCPNTPIILVGT 142

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 15/171 (8%)
Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTA 238
           +G  +  ++VG+         +S        + +  +F   SA    + K V L LWDTA
Sbjct: 27  QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 86
Query: 239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTD 297
           G E +  L P     + V ++ + + +  SF    +KW  +VR     +  I+LVG K D
Sbjct: 87  GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 145
Query: 298 LSDKR------------QVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
           L D +             ++  +G   AKE+  V ++E SA     +K +F
Sbjct: 146 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 2   SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
           + +G   N  +  K+V +G+ +VGKT L+  F        Y  T+              F
Sbjct: 12  TGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--------------F 57
Query: 62  DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
           +N           S  M  ++    L LWDTAGQE +  L P    DS V ++ + + N 
Sbjct: 58  EN----------FSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR 107
Query: 122 NSFHQTS-KWIDDVR 135
            SF   S KW  +++
Sbjct: 108 TSFDNISTKWEPEIK 122

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 176 RTERGSDVI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           + E G   + I++VG+         ++  +GE     +  +F   S    Y  ++  L L
Sbjct: 16  KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 75
Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KW-------IDDVRTERGSD 286
           WDTAGQE +  L P    DS V ++ + + N  SF   S KW       ID  +T     
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT----- 130
Query: 287 VIIMLVGNKTDL--SDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
              +LVG K DL       V+ +EG+   ++L  V +IE S+ A   + ++F +
Sbjct: 131 ---VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 25/135 (18%)
Query: 2   SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
           + +G   N  +  K+V +G+ +VGKT L+  F        Y  T+              F
Sbjct: 11  TGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--------------F 56
Query: 62  DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
           +N           S  M  ++    L LWDTAGQE +  L P    DS V ++ + + N 
Sbjct: 57  EN----------FSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR 106
Query: 122 NSFHQTS-KWIDDVR 135
            SF   S KW  +++
Sbjct: 107 TSFDNISTKWEPEIK 121

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 176 RTERGSDVI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           + E G   + I++VG+         ++  +GE     +  +F   S    Y  ++  L L
Sbjct: 15  KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 74
Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KW-------IDDVRTERGSD 286
           WDTAGQE +  L P    DS V ++ + + N  SF   S KW       ID  +T     
Sbjct: 75  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT----- 129
Query: 287 VIIMLVGNKTDL--SDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
              +LVG K DL       V+ +EG+   ++L  V +IE S+ A   + ++F +
Sbjct: 130 ---VLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 180

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 60/213 (28%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           K K+V +G+   GKT+L+  F  D F   Y  T+              F+N Y A+  ID
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTASFEID 72
Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
                     + + L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 73  ---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 123
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
            +++ E   +  ++LVG                         D+RT+         V   
Sbjct: 124 GEIQ-EFCPNTKMLLVGCKS----------------------DLRTD---------VSTL 151
Query: 192 TDLSDKRQ--VSTEEGERKAKELNVM-FIETSA 221
            +LS+ RQ  VS ++G   AK++    +IE SA
Sbjct: 152 VELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERG 284
           + +++ L LWDT+G   + ++ P    DS   ++ +DI+   +      KW  +++ E  
Sbjct: 72  DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFC 130
Query: 285 SDVIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNVM-FIETSAKAGYN- 330
            +  ++LVG K+D          LS+ RQ  VS ++G   AK++    +IE SA    N 
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 190
Query: 331 VKQLFRRVAAAL 342
           V+ +F     A 
Sbjct: 191 VRDIFHVATLAC 202

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 60/213 (28%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           K K+V +G+   GKT+L+  F  D F   Y  T+              F+N Y A+  ID
Sbjct: 23  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTASFEID 67
Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
                     + + L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 68  ---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 118
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
            +++ E   +  ++LVG                         D+RT+         V   
Sbjct: 119 GEIQ-EFCPNTKMLLVGCKS----------------------DLRTD---------VSTL 146
Query: 192 TDLSDKRQ--VSTEEGERKAKELNVM-FIETSA 221
            +LS+ RQ  VS ++G   AK++    +IE SA
Sbjct: 147 VELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERG 284
           + +++ L LWDT+G   + ++ P    DS   ++ +DI+   +      KW  +++ E  
Sbjct: 67  DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFC 125
Query: 285 SDVIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNVM-FIETSAKAGYN- 330
            +  ++LVG K+D          LS+ RQ  VS ++G   AK++    +IE SA    N 
Sbjct: 126 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 185
Query: 331 VKQLFRRVAAAL 342
           V+ +F     A 
Sbjct: 186 VRDIFHVATLAC 197

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 60/213 (28%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           K K+V +G+   GKT+L+  F  D F   Y  T+              F+N Y A+  ID
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTASFEID 51
Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
                     + + L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 52  ---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 102
Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
            +++ E   +  ++LVG                         D+RT+         V   
Sbjct: 103 GEIQ-EFCPNTKMLLVGCKS----------------------DLRTD---------VSTL 130
Query: 192 TDLSDKRQ--VSTEEGERKAKELNVM-FIETSA 221
            +LS+ RQ  VS ++G   AK++    +IE SA
Sbjct: 131 VELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-S 273
           +F   +A    + +++ L LWDT+G   + ++ P    DS   ++ +DI+   +      
Sbjct: 40  VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 99
Query: 274 KWIDDVRTERGSDVIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNVM-F 320
           KW  +++ E   +  ++LVG K+D          LS+ RQ  VS ++G   AK++    +
Sbjct: 100 KWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 158
Query: 321 IETSAKAGYN-VKQLFRRVAAAL 342
           IE SA    N V+ +F     A 
Sbjct: 159 IECSALQSENSVRDIFHVATLAC 181

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 23/128 (17%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           + K+  +GE +VGK++LI+ F                TS  ++F+ D     Y  T G++
Sbjct: 20  RCKVAVVGEATVGKSALISMF----------------TSKGSKFLKD-----YAMTSGVE 58
Query: 73  FLSKTMYLEDRTVRLQLW--DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
            +   + + D TV ++L+  DTAG + ++  I  Y      A++V+D+++  SF     W
Sbjct: 59  VVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAW 118
Query: 131 IDDVRTER 138
            + +++ R
Sbjct: 119 FELLKSAR 126

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID---DVRTERGSD 286
           V L L DTAG + ++  I  Y      A++V+D+++  SF     W +     R +R   
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132
Query: 287 VIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIETSA-KAGYNVKQLFRRVA 339
           +  +LV NKTDL  +R QV  +  +  A    + F + SA   G +    F  +A
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 56  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 114
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 115 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 175 --AILAALEPPEPK 186

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 172 --AILAALEPPEPK 183

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 55  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 113
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 114 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 174 --AILAALEPPEPK 185

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 172 --AILAALEPPEPK 183

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 172 --AILAALEPPEPK 183

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 172 --AILAALEPPEPK 183

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 172 --AILAALEPPEPK 183

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 54  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 112
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 113 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 172
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 173 --AILAALEPPEPK 184

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 56  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 114
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 115 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 175 --AILAALEPPEPK 186

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 63  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 121
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 122 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 181
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 182 --AILAALEPPEPK 193

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 60  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 118
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 119 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 179 --AILAALEPPEPK 190

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 60  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 118
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 119 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 178
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 179 --AILAALEPPEPK 190

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
            + AAL
Sbjct: 172 AILAAL 177

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 57  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 115
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 116 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
Query: 337 RVAAAL 342
            + AAL
Sbjct: 176 AILAAL 181

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 55  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 113
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 114 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
Query: 337 RVAAAL 342
            + AAL
Sbjct: 174 AILAAL 179

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
            + AAL
Sbjct: 172 AILAAL 177

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
Query: 337 RVAAAL 342
            + AAL
Sbjct: 172 AILAAL 177

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
Query: 337 RVAAAL 342
            + AAL
Sbjct: 172 AILAAL 177

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
            + AAL
Sbjct: 172 AILAAL 177

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
            + AAL
Sbjct: 172 AILAAL 177

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L DTAGQE +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-R 336
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 337 RVAAAL 342
            + AAL
Sbjct: 172 AILAAL 177

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAG E +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 53  LGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 111
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 172 --AILAALEPPEPK 183

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 232 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIM 290
           L L+DTAG E +  L P     + V +V + + + +SF     KW+ ++ T        +
Sbjct: 57  LGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFL 115
Query: 291 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG + DL D            ++ ++ E  E+ A++L  V ++E SA     +K +F  
Sbjct: 116 LVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
Query: 338 VAAALPGMDSTENK 351
             A L  ++  E K
Sbjct: 176 --AILAALEPPEPK 187

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           + KLV +G+   GKT+++     D +  TY  T+              F+N Y A +   
Sbjct: 10  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FEN-YTACLET- 53
Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
                   E++ V L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 54  --------EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKW- 104
Query: 132 DDVRTE 137
              RTE
Sbjct: 105 ---RTE 107

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
           ++V L LWDT+G   + ++ P    DS   ++ +DI+   +      KW  ++  +    
Sbjct: 56  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPS 114
Query: 287 VIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNV-MFIETSA 325
             ++L+G KTD          LS ++Q  +S E+G   AK+L   +++E SA
Sbjct: 115 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           + KLV +G+   GKT+++     D +  TY  T+              F+N Y A +   
Sbjct: 11  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FEN-YTACLET- 54
Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
                   E++ V L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 55  --------EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKW- 105
Query: 132 DDVRTE 137
              RTE
Sbjct: 106 ---RTE 108

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
           ++V L LWDT+G   + ++ P    DS   ++ +DI+   +      KW  ++  +    
Sbjct: 57  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPS 115
Query: 287 VIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNV-MFIETSA 325
             ++L+G KTD          LS ++Q  +S E+G   AK+L   +++E SA
Sbjct: 116 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 26/138 (18%)
Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           + KLV +G+   GKT+++     D +  TY  T+              F+N Y A +   
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FEN-YTACLET- 70
Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWI 131
                   E++ V L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 71  --------EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWR 122
Query: 132 DDVRTERGSDVIIMLVGS 149
            ++  +      ++L+G 
Sbjct: 123 TEI-LDYCPSTRVLLIGC 139

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSD 286
           ++V L LWDT+G   + ++ P    DS   ++ +DI+   +      KW  ++  +    
Sbjct: 73  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPS 131
Query: 287 VIIMLVGNKTD----------LSDKRQ--VSTEEGERKAKELNV-MFIETSA 325
             ++L+G KTD          LS ++Q  +S E+G   AK+L   +++E SA
Sbjct: 132 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 220 SAKAGYNVK----QVR--------LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 267
           SA  G +VK    Q+R        L +WD AG+E F S  P +     + + VYD++   
Sbjct: 32  SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQ 91
Query: 268 SFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDKRQ 303
           +     K W+ +++  R S   ++LVG   D+SD++Q
Sbjct: 92  AEVDAXKPWLFNIKA-RASSSPVILVGTHLDVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 220 SAKAGYNVK----QVR--------LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 267
           SA  G +VK    Q+R        L +WD AG+E F S  P +     + + VYD++   
Sbjct: 34  SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQ 93
Query: 268 SFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDKRQ 303
           +     K W+ +++  R S   ++LVG   D+SD++Q
Sbjct: 94  AEVDAXKPWLFNIKA-RASSSPVILVGTHLDVSDEKQ 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	7e-91
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-70
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-89
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-70
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	9e-81
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-66
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-80
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-62
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-80
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	9e-63
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-80
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-66
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-76
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-60
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-74
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	8e-60
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-73
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-57
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	5e-68
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-50
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-64
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-48
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-63
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	5e-51
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-63
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-52
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-61
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-47
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	7e-61
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-46
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-60
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-44
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	4e-60
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	9e-50
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	8e-60
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-49
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	9e-60
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	8e-55
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	9e-60
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-49
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-59
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-48
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-59
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-49
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-59
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-49
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-59
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	8e-49
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	5e-59
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-49
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-59
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	6e-49
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	7e-59
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	9e-51
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	8e-59
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-48
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	8e-59
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	5e-49
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-58
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	7e-49
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-58
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	4e-48
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-58
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-48
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-58
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-48
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-58
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	7e-49
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-58
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-49
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-58
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-48
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	4e-58
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-45
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	5e-58
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-43
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-58
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-48
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-57
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-45
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-57
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-40
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-57
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-47
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-57
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-47
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-57
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-47
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-56
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-48
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	6e-56
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-46
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-55
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	5e-45
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	8e-55
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-46
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	5e-54
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-45
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-54
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-44
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-53
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	6e-44
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	8e-53
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-43
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-52
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-42
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-52
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-42
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-52
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-43
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-52
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-42
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	9e-52
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-43
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-50
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-42
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-49
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-49
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-40
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	4e-48
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-40
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-48
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-39
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-47
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	7e-39
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	4e-46
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-37
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	6e-46
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	7e-38
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	8e-46
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-38
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	9e-46
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-37
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-37
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	5e-41
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-32
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-40
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	5e-34
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-39
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-29
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	5e-35
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-29
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	7e-35
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-28
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-34
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	8e-28
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-34
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-27
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-33
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-26
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	4e-33
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-26
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	8e-33
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-26
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-32
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-27
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	8e-31
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-26
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-30
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-25
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	9e-30
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-24
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-28
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	7e-23
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	4e-25
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-22
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-20
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-17
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-12
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	8e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-07
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-04
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	3e-07
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	8e-07
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-05
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-06
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-04
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-06
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	5e-05
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-06
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	8e-05
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-06
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	8e-05
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-06
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-06
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	9e-05
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-06
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	7e-05
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-06
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-04
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	9e-06
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-04
1nrj_B	218	SR-beta, signal recognition particle receptor beta	5e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	5e-04
2fh5_B	214	SR-beta, signal recognition particle receptor beta	8e-05
3llu_A	196	RAS-related GTP-binding protein C; structural geno	9e-05
3llu_A	196	RAS-related GTP-binding protein C; structural geno	5e-04
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-04
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-04
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-04
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	5e-04
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	5e-04

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  270 bits (692), Expect = 7e-91
 Identities = 157/230 (68%), Positives = 161/230 (70%), Gaps = 64/230 (27%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MS+ GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI              
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI-------------- 49

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
                    GIDFLSKTMYLEDRTVRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN
Sbjct: 50  ---------GIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
                                                     NSF QT+KWIDDVRTERG
Sbjct: 101 -----------------------------------------VNSFQQTTKWIDDVRTERG 119

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           SDVIIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 169

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  217 bits (555), Expect = 3e-70
 Identities = 114/128 (89%), Positives = 121/128 (94%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + VRLQLWDTAG ERFRSLIPSYIRDSTVAVVVYDITN NSF QT+KWIDDVRTERGSDV
Sbjct: 63  RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
           IIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM+S
Sbjct: 123 IIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES 182

Query: 348 TENKPPED 355
           T+++  ED
Sbjct: 183 TQDRSRED 190

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  265 bits (680), Expect = 1e-89
 Identities = 162/228 (71%), Positives = 163/228 (71%), Gaps = 64/228 (28%)

Query: 3   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
           SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI                
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI---------------- 47

Query: 63  NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
                  GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN  
Sbjct: 48  -------GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN-- 98

Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
                                                   NSFHQTSKWIDDVRTERGSD
Sbjct: 99  ---------------------------------------TNSFHQTSKWIDDVRTERGSD 119

Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ+
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  216 bits (552), Expect = 3e-70
 Identities = 116/119 (97%), Positives = 117/119 (98%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN NSFHQTSKWIDDVRTERGSDV
Sbjct: 61  RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
           IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD
Sbjct: 121 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  243 bits (622), Expect = 9e-81
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 64/228 (28%)

Query: 3   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
           S    GN     KLV LG+   GK+SL+ RF+ D F    ++TI                
Sbjct: 2   SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---------------- 45

Query: 63  NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 122
                  G  F S+T+ + D TV+ ++WDTAGQER+ SL P Y R +  A++V+D+TN  
Sbjct: 46  -------GAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN-- 96

Query: 123 SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
                                                    SF +  KW+ +++ +   +
Sbjct: 97  ---------------------------------------QASFERAKKWVQELQAQGNPN 117

Query: 183 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           +++ L GNK+DL D R+V+ E+ +  A+E  + F+ETSAK   NVK++
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI 165

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  206 bits (527), Expect = 2e-66
 Identities = 51/123 (41%), Positives = 82/123 (66%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             V+ ++WDTAGQER+ SL P Y R +  A++V+D+TN  SF +  KW+ +++ +   ++
Sbjct: 59  ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNM 118

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
           ++ L GNK+DL D R+V+ E+ +  A+E  + F+ETSAK   NVK++F  +A  LP +  
Sbjct: 119 VMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178

Query: 348 TEN 350
           TEN
Sbjct: 179 TEN 181

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  242 bits (620), Expect = 2e-80
 Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 64/223 (28%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G+ LR+ K+  LG+  VGK+S++ RF+ DSFD     TI                     
Sbjct: 1   GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI--------------------- 39

Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
             G  F++KT+  ++   +  +WDTAG ERFR+L P Y R S  A++VYDIT   +F   
Sbjct: 40  --GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL 97

Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ ++R                         H                     +++ +
Sbjct: 98  KNWVRELRQ------------------------HGP-----------------PSIVVAI 116

Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            GNK DL+D R+V   + +  A  ++ +F+ETSAK   N+ ++
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININEL 159

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  196 bits (500), Expect = 2e-62
 Identities = 42/116 (36%), Positives = 69/116 (59%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           +  +  +WDTAG ERFR+L P Y R S  A++VYDIT   +F     W+ ++R      +
Sbjct: 53  ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI 112

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
           ++ + GNK DL+D R+V   + +  A  ++ +F+ETSAK   N+ +LF  ++  +P
Sbjct: 113 VVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  241 bits (617), Expect = 4e-80
 Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 64/223 (28%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE +VGK+SL+ RF+   F    ++TI                     
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI--------------------- 39

Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
             G  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDITN       
Sbjct: 40  --GAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN------- 90

Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
                                               SF +   W+ +++ +   +++I L
Sbjct: 91  ----------------------------------EESFARAKNWVKELQRQASPNIVIAL 116

Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++
Sbjct: 117 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 159

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  196 bits (502), Expect = 9e-63
 Identities = 49/116 (42%), Positives = 76/116 (65%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +   ++
Sbjct: 53  TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 112

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
           +I L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  241 bits (618), Expect = 5e-80
 Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 64/223 (28%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G+ +R+ K+  LG+  VGK+S++ RF+ D FD+    TI                     
Sbjct: 18  GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTI--------------------- 56

Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
             G  F++KT+   +   +  +WDTAGQERF SL P Y R S  AV+VYDIT        
Sbjct: 57  --GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK------- 107

Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
                                              +SF+   KW+ +++     ++++ +
Sbjct: 108 ----------------------------------QDSFYTLKKWVKELKEHGPENIVMAI 133

Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            GNK DLSD R+V  ++ +  A+ +  + +ETSAK   N++++
Sbjct: 134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  205 bits (525), Expect = 5e-66
 Identities = 48/123 (39%), Positives = 79/123 (64%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           +  +  +WDTAGQERF SL P Y R S  AV+VYDIT  +SF+   KW+ +++     ++
Sbjct: 70  ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENI 129

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
           ++ + GNK DLSD R+V  ++ +  A+ +  + +ETSAK   N+++LF+ ++  +P +D 
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189

Query: 348 TEN 350
            EN
Sbjct: 190 HEN 192

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  232 bits (594), Expect = 1e-76
 Identities = 57/224 (25%), Positives = 83/224 (37%), Gaps = 62/224 (27%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G+ +R+ K+V LG+ + GKTSL T F  ++F   Y+ TI                     
Sbjct: 1   GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI--------------------- 39

Query: 68  TIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
             G+DF  + + L     V LQ+WD  GQ     ++  YI  +   ++VYDITN  SF  
Sbjct: 40  --GLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN 97

Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
              W                                         +  V  E  +  ++ 
Sbjct: 98  LEDWYTV--------------------------------------VKKVSEESETQPLVA 119

Query: 187 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           LVGNK DL   R +  E+  R  +E        SAK G +V   
Sbjct: 120 LVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  190 bits (486), Expect = 3e-60
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW---IDDVRTERG 284
             V LQ+WD  GQ     ++  YI  +   ++VYDITN  SF     W   +  V  E  
Sbjct: 54  LNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE 113

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
           +  ++ LVGNK DL   R +  E+  R  +E        SAK G +V   F++VAA + G
Sbjct: 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173

Query: 345 MDSTE 349
           +   +
Sbjct: 174 IKLNK 178

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  226 bits (578), Expect = 3e-74
 Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 64/223 (28%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G+    FK+V LGE  VGKTSL+ R+  + F++ +  T+                     
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--------------------- 39

Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
             G  FL+K + +  + V L +WDTAGQERF +L P Y RDS  A++VYDIT+ +SF + 
Sbjct: 40  --GASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV 97

Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
             W+ ++R                                             +++ + +
Sbjct: 98  KNWVKELRK------------------------MLG-----------------NEICLCI 116

Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           VGNK DL  +R VS +E E  A+ +      TSAK    ++++
Sbjct: 117 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL 159

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  189 bits (482), Expect = 8e-60
 Identities = 47/116 (40%), Positives = 72/116 (62%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V L +WDTAGQERF +L P Y RDS  A++VYDIT+ +SF +   W+ ++R   G+++
Sbjct: 53  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 112

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            + +VGNK DL  +R VS +E E  A+ +      TSAK    +++LF  +   + 
Sbjct: 113 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  223 bits (572), Expect = 3e-73
 Identities = 62/217 (28%), Positives = 85/217 (39%), Gaps = 65/217 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K+V +G  +VGK+S+I R+    F   Y+ TI                       G+DF
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI-----------------------GVDF 42

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
           L + + + D  VRL LWDTAGQE F ++  +Y R +   V+V+  T+  SF   S W + 
Sbjct: 43  LERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK 102

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           V  E                                            D+   LV NK D
Sbjct: 103 VVAEV------------------------------------------GDIPTALVQNKID 120

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           L D   +  EE E  AK L + F  TS K   NV +V
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEV 157

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  182 bits (464), Expect = 3e-57
 Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 1/115 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + VRL LWDTAGQE F ++  +Y R +   V+V+  T+  SF   S W + V  E   D+
Sbjct: 52  EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDI 110

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
              LV NK DL D   +  EE E  AK L + F  TS K   NV ++F+ +A   
Sbjct: 111 PTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  211 bits (540), Expect = 5e-68
 Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 65/230 (28%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           M+S           K++ LG+  VGKTSL+ +++   F N Y+ATI              
Sbjct: 1   MTSRKKV-----LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-------------- 41

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
                    G DFL+K + ++DR V +Q+WDTAGQERF+SL  ++ R +   V+V+D+T 
Sbjct: 42  ---------GADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA 92

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            N+F     W D+                            A+                 
Sbjct: 93  PNTFKTLDSWRDEFLI------------------------QAS-------------PRDP 115

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            +   +++GNK DL +++  +         + N+ + ETSAK   NV+Q 
Sbjct: 116 ENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  167 bits (424), Expect = 1e-50
 Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT----ER 283
           + V +Q+WDTAGQERF+SL  ++ R +   V+V+D+T  N+F     W D+         
Sbjct: 55  RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114

Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
             +   +++GNK DL +++  +         + N+ + ETSAK   NV+Q F+ +A    
Sbjct: 115 PENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

Query: 344 GMDSTENKPPED 355
             ++      E 
Sbjct: 175 KQETEVELYNEF 186

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  201 bits (514), Expect = 4e-64
 Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 63/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K+  +GE +VGK++LI+ F                           F   Y  T G++ 
Sbjct: 21  CKVAVVGEATVGKSALISMFTSKG---------------------SKFLKDYAMTSGVEV 59

Query: 74  LSKTMYLEDRTVRLQLW--DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           +   + + D TV ++L+  DTAG + ++  I  Y      A++V+D+++  SF     W 
Sbjct: 60  VVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF 119

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
           + +++ R                                            +  +LV NK
Sbjct: 120 ELLKSARP---------------------DRE-----------------RPLRAVLVANK 141

Query: 192 TDLSDKR-QVSTEEGERKAKELNVMFIETSAKA-GYNVKQV 230
           TDL  +R QV  +  +  A    + F + SA   G +    
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAP 182

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  162 bits (411), Expect = 1e-48
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 228 KQVRLQLW--DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG- 284
             V ++L+  DTAG + ++  I  Y      A++V+D+++  SF     W + +++ R  
Sbjct: 69  TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD 128

Query: 285 --SDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNVMFIETSAKA-GYNVKQLFRRVAA 340
               +  +LV NKTDL  +R QV  +  +  A    + F + SA   G +    F  +A 
Sbjct: 129 RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188

Query: 341 ALP 343
              
Sbjct: 189 TFY 191

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  200 bits (510), Expect = 1e-63
 Identities = 66/240 (27%), Positives = 97/240 (40%), Gaps = 70/240 (29%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
              S    +  + +K+V  G+ +VGK+S + R   + F     AT+              
Sbjct: 16  PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL-------------- 61

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
                    G+DF  KT+ ++     LQLWDTAGQERFRS+  SY R +   +++YD+T 
Sbjct: 62  ---------GVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC 112

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
             SF    +W+D +                           A+                 
Sbjct: 113 EKSFLNIREWVDMIED------------------------AAH----------------- 131

Query: 181 SDVIIMLVGNKTDLSD------KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
             V IMLVGNK D+ D      ++ V    GE+ A     +F ETSAK G N+ +  L L
Sbjct: 132 ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHL 191

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  167 bits (426), Expect = 5e-51
 Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 6/121 (4%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           ++  LQLWDTAGQERFRS+  SY R +   +++YD+T   SF    +W+D +       V
Sbjct: 75  ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETV 134

Query: 288 IIMLVGNKTDLSD------KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 341
            IMLVGNK D+ D      ++ V    GE+ A     +F ETSAK G N+ +    +A  
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194

Query: 342 L 342
           +
Sbjct: 195 V 195

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  199 bits (507), Expect = 4e-63
 Identities = 64/185 (34%), Positives = 98/185 (52%), Gaps = 42/185 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT ++ RF   +F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQERFR++  SY 
Sbjct: 40  VGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYY 99

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++ YDIT  +SF     WI+DVR                         +A    
Sbjct: 100 RSANGAILAYDITKRSSFLSVPHWIEDVRK------------------------YAG--- 132

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 225
                         S+++ +L+GNK+DLS+ R+VS  E +  A+  +++  IETSAK   
Sbjct: 133 --------------SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178

Query: 226 NVKQV 230
           NV++ 
Sbjct: 179 NVEEA 183

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  170 bits (432), Expect = 5e-52
 Identities = 56/116 (48%), Positives = 81/116 (69%), Gaps = 1/116 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V+LQ+WDTAGQERFR++  SY R +  A++ YDIT  +SF     WI+DVR   GS++
Sbjct: 76  KRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI 135

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL 342
           + +L+GNK+DLS+ R+VS  E +  A+  +++  IETSAK   NV++ F RVA  L
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  194 bits (495), Expect = 5e-61
 Identities = 48/234 (20%), Positives = 90/234 (38%), Gaps = 68/234 (29%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           M+S+   G P  +FKLV +G+   GKT+ + R +   F+  Y AT+              
Sbjct: 4   MASAAQ-GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL-------------- 48

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
                    G++      +     ++  +WDTAGQE+F  L   Y   +  A++++D+T+
Sbjct: 49  ---------GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
             ++     W  D+                                              
Sbjct: 100 RVTYKNVPNWHRDLV------------------------RVCE----------------- 118

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            ++ I+L GNK D+ D++     +     ++ N+ + + SAK+ YN ++  L L
Sbjct: 119 -NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  159 bits (403), Expect = 2e-47
 Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 3/124 (2%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           N   ++  +WDTAGQE+F  L   Y   +  A++++D+T+  ++     W  D+      
Sbjct: 60  NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCE 118

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 345
           ++ I+L GNK D+ D++     +     ++ N+ + + SAK+ YN ++ F  +A  L G 
Sbjct: 119 NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176

Query: 346 DSTE 349
            + E
Sbjct: 177 PNLE 180

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  192 bits (490), Expect = 7e-61
 Identities = 67/233 (28%), Positives = 98/233 (42%), Gaps = 68/233 (29%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           MSS           K++ LG+  VGKTSL+ R++ D +   Y+ATI              
Sbjct: 1   MSSRKKN-----ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI-------------- 41

Query: 61  FDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
                    G DFL+K + ++ D+   +Q+WDTAGQERF+SL  ++ R +   V+VYD+T
Sbjct: 42  ---------GADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT 92

Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
           NA+SF     W D+                           HAN                
Sbjct: 93  NASSFENIKSWRDEFLV------------------------HAN-------------VNS 115

Query: 180 GSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
                 +++GNK D  + K+ VS +  +  AK L  +    TSAK   NV   
Sbjct: 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTA 168

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  154 bits (392), Expect = 3e-46
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 6/121 (4%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT----ER 283
           K   +Q+WDTAGQERF+SL  ++ R +   V+VYD+TNA+SF     W D+         
Sbjct: 56  KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115

Query: 284 GSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAA 341
                 +++GNK D  + K+ VS +  +  AK L  +    TSAK   NV   F  +A +
Sbjct: 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175

Query: 342 L 342
            
Sbjct: 176 A 176

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  190 bits (485), Expect = 3e-60
 Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 67/223 (30%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           +   KLV LGE +VGK+S++ RF+ + F    + TI                       G
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI-----------------------G 37

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
             FL++ + + + TV+ ++WDTAGQERF SL P Y R++  A+VVYD+T           
Sbjct: 38  AAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK---------- 87

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
                                            SF +   W+ ++  +   D+II LVGN
Sbjct: 88  -------------------------------PQSFIKARHWVKELHEQASKDIIIALVGN 116

Query: 191 KTD---LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           K D      +R+V+ EEGE+ A+E  ++F ETSAK G NV  V
Sbjct: 117 KIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  148 bits (376), Expect = 5e-44
 Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 3/119 (2%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             V+ ++WDTAGQERF SL P Y R++  A+VVYD+T   SF +   W+ ++  +   D+
Sbjct: 50  HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI 109

Query: 288 IIMLVGNKTD---LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
           II LVGNK D      +R+V+ EEGE+ A+E  ++F ETSAK G NV  +F  +   +P
Sbjct: 110 IIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  190 bits (485), Expect = 4e-60
 Identities = 64/184 (34%), Positives = 92/184 (50%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTS + R+  DSF   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQER+R++  +Y 
Sbjct: 33  VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYY 92

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +++YDI N  SF     W   ++T                        ++    
Sbjct: 93  RGAMGFLLMYDIANQESFAAVQDWATQIKT------------------------YSW--- 125

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +  ++LVGNK DL D+R V  E+G R A +L   F E SAK   N
Sbjct: 126 --------------DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171

Query: 227 VKQV 230
           VKQV
Sbjct: 172 VKQV 175

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  164 bits (417), Expect = 9e-50
 Identities = 48/115 (41%), Positives = 71/115 (61%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++LQ+WDTAGQER+R++  +Y R +   +++YDI N  SF     W   ++T    + 
Sbjct: 69  KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            ++LVGNK DL D+R V  E+G R A +L   F E SAK   NVKQ+F R+   +
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  190 bits (484), Expect = 8e-60
 Identities = 55/184 (29%), Positives = 98/184 (53%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+WDTAG ER+R++  +Y 
Sbjct: 40  VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY 99

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDI    ++    +W+ ++R                         HA+   
Sbjct: 100 RGAVGALLVYDIAKHLTYENVERWLKELRD------------------------HAD--- 132

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         S+++IMLVGNK+DL   R V T+E    A++  + FIETSA    N
Sbjct: 133 --------------SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178

Query: 227 VKQV 230
           V+  
Sbjct: 179 VEAA 182

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  162 bits (413), Expect = 3e-49
 Identities = 43/115 (37%), Positives = 71/115 (61%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAG ER+R++  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 76  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +IMLVGNK+DL   R V T+E    A++  + FIETSA    NV+  F+ +   +
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  190 bits (485), Expect = 9e-60
 Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 58/232 (25%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI--------------VGKTSLITRFMY 58
            +K V LGE SVGK+S++ R   D+F      TI                K +       
Sbjct: 7   SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66

Query: 59  DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 118
           +         + I             ++  +WDTAGQER+ S++P Y R +T A+VV+DI
Sbjct: 67  NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126

Query: 119 TNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE 178
           +N+N+  +   W++ ++                                           
Sbjct: 127 SNSNTLDRAKTWVNQLKIS----------------------------------------- 145

Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
             S+ II+LV NK D  +K QV   E ++ A++ N++FI+TSAK G N+K +
Sbjct: 146 --SNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNI 194

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  177 bits (451), Expect = 8e-55
 Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 185 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR 244
           ++ + +    ++              + NV+          N+  ++  +WDTAGQER+ 
Sbjct: 48  VVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYA 107

Query: 245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV 304
           S++P Y R +T A+VV+DI+N+N+  +   W++ ++    S+ II+LV NK D  +K QV
Sbjct: 108 SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILVANKIDK-NKFQV 164

Query: 305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
              E ++ A++ N++FI+TSAK G N+K +F  +A  + 
Sbjct: 165 DILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  190 bits (485), Expect = 9e-60
 Identities = 64/184 (34%), Positives = 93/184 (50%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++ N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQERFR++  SY 
Sbjct: 19  VGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 78

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R S   ++VYD+T+  SF+    W+ ++                          +A    
Sbjct: 79  RGSHGIIIVYDVTDQESFNGVKMWLQEIDR------------------------YAT--- 111

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         S V+ +LVGNK DL DKR V  +  +  A    + F+ETSA    N
Sbjct: 112 --------------STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157

Query: 227 VKQV 230
           V+  
Sbjct: 158 VEDA 161

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  164 bits (416), Expect = 2e-49
 Identities = 48/115 (41%), Positives = 69/115 (60%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFR++  SY R S   ++VYD+T+  SF+    W+ ++     S V
Sbjct: 55  KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV 114

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           + +LVGNK DL DKR V  +  +  A    + F+ETSA    NV+  F  +A  +
Sbjct: 115 LKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  188 bits (481), Expect = 1e-59
 Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 64/218 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK++ +GE  VGK++L   F     D+ ++                            D 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN-----------------------SEDT 39

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-YIRDSTVAVVVYDITNANSFHQTSKWID 132
             + + ++   V L ++D   Q      +    ++     ++V+ +T+  SF +  + + 
Sbjct: 40  YERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL 99

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
            +R  R                                           D+ ++LVGNK+
Sbjct: 100 RLRAGRPHH----------------------------------------DLPVILVGNKS 119

Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           DL+  R+VS EEG   A  L+   IETSA   +N +++
Sbjct: 120 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 157

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  158 bits (403), Expect = 5e-48
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPS-YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD 286
           ++V L ++D   Q      +    ++     ++V+ +T+  SF +  + +  +R  R   
Sbjct: 49  EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 108

Query: 287 -VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            + ++LVGNK+DL+  R+VS EEG   A  L+   IETSA   +N ++LF    
Sbjct: 109 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 162

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  188 bits (480), Expect = 2e-59
 Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
            GK+ L+ +F+   F +    TIG++F SK + +  + V+LQ+WDTAGQERFRS+  SY 
Sbjct: 21  TGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYY 80

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDIT+  +++  + W+ D R                          A+   
Sbjct: 81  RGAAGALLVYDITSRETYNALTNWLTDARM------------------------LAS--- 113

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +++I+L GNK DL   R+V+  E  R A+E  +MF+ETSA  G N
Sbjct: 114 --------------QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 159

Query: 227 VKQV 230
           V++ 
Sbjct: 160 VEEA 163

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  162 bits (413), Expect = 3e-49
 Identities = 51/115 (44%), Positives = 76/115 (66%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFRS+  SY R +  A++VYDIT+  +++  + W+ D R     ++
Sbjct: 57  KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI 116

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +I+L GNK DL   R+V+  E  R A+E  +MF+ETSA  G NV++ F + A  +
Sbjct: 117 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  188 bits (480), Expect = 3e-59
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ +F    F      TIG++F ++ + +  + ++LQ+WDTAGQERFR++  SY 
Sbjct: 26  VGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYY 85

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDIT  ++++  S W+ D R                           N   
Sbjct: 86  RGAAGALMVYDITRRSTYNHLSSWLTDARN------------------------LTN--- 118

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          + +I+L+GNK DL  +R V+ EE ++ A+E  ++F+E SAK G N
Sbjct: 119 --------------PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164

Query: 227 VKQV 230
           V+  
Sbjct: 165 VEDA 168

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  163 bits (414), Expect = 2e-49
 Identities = 48/115 (41%), Positives = 77/115 (66%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           ++++LQ+WDTAGQERFR++  SY R +  A++VYDIT  ++++  S W+ D R     + 
Sbjct: 62  QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT 121

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +I+L+GNK DL  +R V+ EE ++ A+E  ++F+E SAK G NV+  F   A  +
Sbjct: 122 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  188 bits (480), Expect = 3e-59
 Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT+L++RF  + F +  + TIG++F ++T+ L    V+ Q+WDTAG ER+R++  +Y 
Sbjct: 36  VGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYY 95

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++V+D+T   ++    +W+ ++                          HA    
Sbjct: 96  RGAVGALLVFDLTKHQTYAVVERWLKELYD------------------------HAE--- 128

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         + +++MLVGNK+DLS  R+V TEE    A+   ++F+ETSA    N
Sbjct: 129 --------------ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174

Query: 227 VKQV 230
           V+  
Sbjct: 175 VELA 178

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  161 bits (410), Expect = 8e-49
 Identities = 41/115 (35%), Positives = 70/115 (60%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             V+ Q+WDTAG ER+R++  +Y R +  A++V+D+T   ++    +W+ ++     + +
Sbjct: 72  AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATI 131

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           ++MLVGNK+DLS  R+V TEE    A+   ++F+ETSA    NV+  F  V   +
Sbjct: 132 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  188 bits (479), Expect = 5e-59
 Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ +F    F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY 
Sbjct: 32  VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYY 91

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDIT   +F+  + W++D R                         H++   
Sbjct: 92  RGAAGALLVYDITRRETFNHLTSWLEDARQ------------------------HSS--- 124

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         S+++IML+GNK+DL  +R V  EEGE  A+E  ++F+ETSAK   N
Sbjct: 125 --------------SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170

Query: 227 VKQV 230
           V++ 
Sbjct: 171 VEEA 174

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  162 bits (412), Expect = 4e-49
 Identities = 54/115 (46%), Positives = 79/115 (68%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           KQ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F+  + W++D R    S++
Sbjct: 68  KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM 127

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +IML+GNK+DL  +R V  EEGE  A+E  ++F+ETSAK   NV++ F   A  +
Sbjct: 128 VIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  187 bits (478), Expect = 7e-59
 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 44  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 103

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ ++                          +A+   
Sbjct: 104 RGAHGIIVVYDVTDQESFNNVKQWLQEIDR------------------------YAS--- 136

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +V  +LVGNK DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 137 --------------ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182

Query: 227 VKQV 230
           V+Q 
Sbjct: 183 VEQS 186

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  162 bits (412), Expect = 6e-49
 Identities = 48/115 (41%), Positives = 72/115 (62%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 80  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 139

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 140 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  188 bits (480), Expect = 7e-59
 Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 63/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           +K+  +G+  VGKT+ I R +   F+  Y AT+ G                      ++ 
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATV-GA---------------------VNH 49

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
               +  +   ++  +WDTAGQE+   L   Y   ++ A++ +D+T+  +    ++W+ +
Sbjct: 50  PVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKE 109

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
            +                                             ++  I++  NK D
Sbjct: 110 FQA------------------------VVG-----------------NEAPIVVCANKID 128

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           + +++++S +      K  N  + E SAK  +N     L L
Sbjct: 129 IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  167 bits (426), Expect = 9e-51
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 1/127 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
             ++  +WDTAGQE+   L   Y   ++ A++ +D+T+  +    ++W+ + +   G++ 
Sbjct: 59  NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA 118

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG-MD 346
            I++  NK D+ +++++S +      K  N  + E SAK  +N    F  +A    G  D
Sbjct: 119 PIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178

Query: 347 STENKPP 353
                  
Sbjct: 179 LIFVSNV 185

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  187 bits (478), Expect = 8e-59
 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT L+ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQERFRS+  SY 
Sbjct: 37  VGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYY 96

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++ YDIT   SF    +W+ ++                          +A+   
Sbjct: 97  RSANALILTYDITCEESFRCLPEWLREIEQ------------------------YAS--- 129

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         + VI +LVGNK DL+++R+VS +  E  ++  ++ ++ETSAK   N
Sbjct: 130 --------------NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 175

Query: 227 VKQV 230
           V+++
Sbjct: 176 VEKL 179

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  162 bits (411), Expect = 1e-48
 Identities = 48/115 (41%), Positives = 76/115 (66%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           ++V+LQ+WDTAGQERFRS+  SY R +   ++ YDIT   SF    +W+ ++     + V
Sbjct: 73  EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 132

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           I +LVGNK DL+++R+VS +  E  ++  ++ ++ETSAK   NV++LF  +A  L
Sbjct: 133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  187 bits (477), Expect = 8e-59
 Identities = 69/184 (37%), Positives = 102/184 (55%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT ++ RF  D+F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y 
Sbjct: 19  VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDITN  SF     WI ++                          HA+   
Sbjct: 79  RGAMGIMLVYDITNEKSFDNIRNWIRNIEE------------------------HAS--- 111

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         +DV  M++GNK D++DKRQVS E GE+ A +  + F+ETSAKA  N
Sbjct: 112 --------------ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157

Query: 227 VKQV 230
           V+  
Sbjct: 158 VENA 161

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  161 bits (411), Expect = 5e-49
 Identities = 53/115 (46%), Positives = 77/115 (66%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++LQ+WDTAGQERFR++  +Y R +   ++VYDITN  SF     WI ++     +DV
Sbjct: 55  KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             M++GNK D++DKRQVS E GE+ A +  + F+ETSAKA  NV+  F  +A  +
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  187 bits (477), Expect = 1e-58
 Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
            GK+ L+ +F+ + F      TIG++F S+ + +  +TV+LQ+WDTAGQERFRS+  SY 
Sbjct: 36  TGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYY 95

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDIT+  +++  + W+ D RT                         A+   
Sbjct: 96  RGAAGALLVYDITSRETYNSLAAWLTDART------------------------LAS--- 128

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +++++L GNK DL  +R+V+  E  R A+E  +MF+ETSA  G N
Sbjct: 129 --------------PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 174

Query: 227 VKQV 230
           V++ 
Sbjct: 175 VEEA 178

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  162 bits (412), Expect = 7e-49
 Identities = 51/115 (44%), Positives = 78/115 (67%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K V+LQ+WDTAGQERFRS+  SY R +  A++VYDIT+  +++  + W+ D RT    ++
Sbjct: 72  KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI 131

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +++L GNK DL  +R+V+  E  R A+E  +MF+ETSA  G NV++ F + A  +
Sbjct: 132 VVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  188 bits (479), Expect = 1e-58
 Identities = 55/184 (29%), Positives = 100/184 (54%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L++RF  + F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQER+R++  +Y 
Sbjct: 24  VGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYY 83

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDI+ ++S+   + W+ ++R                         +A+   
Sbjct: 84  RGAVGALIVYDISKSSSYENCNHWLSELRE------------------------NAD--- 116

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +V + L+GNK+DL+  R V TEE +  A+E  ++F ETSA    N
Sbjct: 117 --------------DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162

Query: 227 VKQV 230
           V + 
Sbjct: 163 VDKA 166

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  161 bits (408), Expect = 4e-48
 Identities = 45/128 (35%), Positives = 76/128 (59%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++ Q+WDTAGQER+R++  +Y R +  A++VYDI+ ++S+   + W+ ++R     +V
Sbjct: 60  KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV 119

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
            + L+GNK+DL+  R V TEE +  A+E  ++F ETSA    NV + F  +   +    S
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179

Query: 348 TENKPPED 355
                  D
Sbjct: 180 KHQMDLGD 187

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  186 bits (475), Expect = 1e-58
 Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 42/188 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ RF  ++F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQERFR++  +Y 
Sbjct: 20  VGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYY 79

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+A SF    +W+ ++                          + +   
Sbjct: 80  RGTHGVIVVYDVTSAESFVNVKRWLHEINQ------------------------NCD--- 112

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          DV  +LVGNK D  +++ V TE+  + A ++ +   ETSAK   N
Sbjct: 113 ---------------DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157

Query: 227 VKQVRLQL 234
           V+++   +
Sbjct: 158 VEEMFNCI 165

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  160 bits (406), Expect = 3e-48
 Identities = 44/115 (38%), Positives = 74/115 (64%), Gaps = 1/115 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           ++V+LQ+WDTAGQERFR++  +Y R +   +VVYD+T+A SF    +W+ ++  +   DV
Sbjct: 56  EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDV 114

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK D  +++ V TE+  + A ++ +   ETSAK   NV+++F  +   +
Sbjct: 115 CRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  187 bits (477), Expect = 1e-58
 Identities = 57/184 (30%), Positives = 100/184 (54%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L++RF  + F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQER+R +  +Y 
Sbjct: 16  VGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYY 75

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +  A++VYDI    ++    +W+ ++R                         HA+   
Sbjct: 76  RGAVGALLVYDIAKHLTYENVERWLKELRD------------------------HAD--- 108

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         S+++IMLVGNK+DL   R V T+E    A++ N+ FIETSA    N
Sbjct: 109 --------------SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 154

Query: 227 VKQV 230
           V++ 
Sbjct: 155 VEEA 158

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  160 bits (408), Expect = 2e-48
 Identities = 45/115 (39%), Positives = 73/115 (63%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAGQER+R +  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 52  KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 111

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +IMLVGNK+DL   R V T+E    A++ N+ FIETSA    NV++ F+ +   +
Sbjct: 112 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  187 bits (476), Expect = 1e-58
 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF  D++  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERFR++  SY 
Sbjct: 27  VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY 86

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +VVYD+T+  SF+   +W+ ++                          +A+   
Sbjct: 87  RGAHGIIVVYDVTDQESFNNVKQWLQEIDR------------------------YAS--- 119

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +V  +LVGNK DL+ K+ V     +  A  L + F+ETSAK   N
Sbjct: 120 --------------ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165

Query: 227 VKQV 230
           V+Q 
Sbjct: 166 VEQS 169

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  162 bits (411), Expect = 7e-49
 Identities = 48/115 (41%), Positives = 72/115 (62%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++LQ+WDTAGQERFR++  SY R +   +VVYD+T+  SF+   +W+ ++      +V
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +LVGNK DL+ K+ V     +  A  L + F+ETSAK   NV+Q F  +AA +
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  186 bits (474), Expect = 2e-58
 Identities = 68/217 (31%), Positives = 102/217 (47%), Gaps = 63/217 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK++ +G+  VGKT L+ RF   +F                         T+ +T+GIDF
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFL----------------------AGTFISTVGIDF 48

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            +K + ++   V+LQ+WDTAGQERFRS+  +Y RD+   +++YD+TN  SF     W+ +
Sbjct: 49  RNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE 108

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +                          +A                   DV +ML+GNK D
Sbjct: 109 IHE------------------------YAQ-----------------HDVALMLLGNKVD 127

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            + +R V  E+GE+ AKE  + F+ETSAK G NV   
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  163 bits (415), Expect = 1e-49
 Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 2/125 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
            +V+LQ+WDTAGQERFRS+  +Y RD+   +++YD+TN  SF     W+ ++      DV
Sbjct: 58  VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV 117

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS 347
            +ML+GNK D + +R V  E+GE+ AKE  + F+ETSAK G NV   F  +A  L     
Sbjct: 118 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL--KRR 175

Query: 348 TENKP 352
           +   P
Sbjct: 176 SMKAP 180

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  186 bits (475), Expect = 3e-58
 Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTS + R+  DSF   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG ER+R++  +Y 
Sbjct: 19  VGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYY 78

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +++YDITN  SF+    W   ++T                        ++    
Sbjct: 79  RGAMGFILMYDITNEESFNAVQDWSTQIKT------------------------YSW--- 111

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +  ++LVGNK D+ D+R VS+E G + A  L   F E SAK   N
Sbjct: 112 --------------DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157

Query: 227 VKQV 230
           VKQ 
Sbjct: 158 VKQT 161

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  161 bits (409), Expect = 2e-48
 Identities = 47/115 (40%), Positives = 71/115 (61%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+++LQ+WDTAG ER+R++  +Y R +   +++YDITN  SF+    W   ++T    + 
Sbjct: 55  KRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA 114

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            ++LVGNK D+ D+R VS+E G + A  L   F E SAK   NVKQ F R+   +
Sbjct: 115 QVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  185 bits (472), Expect = 4e-58
 Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 44/188 (23%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSY 105
           VGKT L  RF    F +  +ATIG+DF  + + ++   +++QLWDTAGQERFR S++  Y
Sbjct: 31  VGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHY 90

Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
            R+    V VYD+TN  SFH    WI++ +                         H  + 
Sbjct: 91  YRNVHAVVFVYDMTNMASFHSLPAWIEECKQ------------------------HLLA- 125

Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA-- 223
                          +D+  +LVGNK DL    QV T+  ++ A   ++   ETSAK   
Sbjct: 126 ---------------NDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPN 170

Query: 224 -GYNVKQV 230
              +V+ +
Sbjct: 171 DNDHVEAI 178

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  153 bits (390), Expect = 1e-45
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 5/120 (4%)

Query: 228 KQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGS 285
           +++++QLWDTAGQERFR S++  Y R+    V VYD+TN  SFH    WI++ +     +
Sbjct: 67  ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN 126

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA---GYNVKQLFRRVAAAL 342
           D+  +LVGNK DL    QV T+  ++ A   ++   ETSAK      +V+ +F  +A  L
Sbjct: 127 DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  185 bits (471), Expect = 5e-58
 Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 39/185 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ R++ + FD     TIG++FL+K + ++   V +Q+WDTAGQERFRSL   + 
Sbjct: 18  VGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFY 77

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R S   ++ + + ++ SF   S W  +                           +A+   
Sbjct: 78  RGSDCCLLTFSVDDSQSFQNLSNWKKEFIY------------------------YAD--- 110

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGY 225
                      +       +++GNK D+S+ RQVSTEE +   ++     + ETSAK   
Sbjct: 111 ----------VKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDAT 159

Query: 226 NVKQV 230
           NV   
Sbjct: 160 NVAAA 164

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  147 bits (374), Expect = 1e-43
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT----ER 283
             V +Q+WDTAGQERFRSL   + R S   ++ + + ++ SF   S W  +       + 
Sbjct: 54  HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 113

Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA 339
                 +++GNK D+S+ RQVSTEE +   ++     + ETSAK   NV   F    
Sbjct: 114 PESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 169

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  185 bits (472), Expect = 6e-58
 Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTS + R+  D+F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQER+R++  +Y 
Sbjct: 34  VGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   +++YDITN  SF+    W   ++T                        ++    
Sbjct: 94  RGAMGFILMYDITNEESFNAVQDWATQIKT------------------------YSW--- 126

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +  ++LVGNK D+ ++R V TE+G+  A++L   F E SAK   +
Sbjct: 127 --------------DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172

Query: 227 VKQV 230
           V+Q 
Sbjct: 173 VRQA 176

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  160 bits (407), Expect = 2e-48
 Identities = 47/115 (40%), Positives = 75/115 (65%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V+LQ+WDTAGQER+R++  +Y R +   +++YDITN  SF+    W   ++T    + 
Sbjct: 70  KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA 129

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            ++LVGNK D+ ++R V TE+G+  A++L   F E SAK   +V+Q F R+  A+
Sbjct: 130 QVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  184 bits (469), Expect = 2e-57
 Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 41/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+SL+ RF  D+FD    ATIG+DF  KT+ ++    +L +WDTAGQERFR+L PSY 
Sbjct: 26  VGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY 85

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD+T  ++F +   W++++ T                        +     
Sbjct: 86  RGAQGVILVYDVTRRDTFVKLDNWLNELET------------------------YCTR-- 119

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                         +D++ MLVGNK D  + R+V   EG + A++ +++FIE SAK    
Sbjct: 120 --------------NDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDG 164

Query: 227 VKQV 230
           V+  
Sbjct: 165 VQCA 168

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  153 bits (388), Expect = 2e-45
 Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 5/129 (3%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SD 286
            + +L +WDTAGQERFR+L PSY R +   ++VYD+T  ++F +   W++++ T    +D
Sbjct: 62  NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND 121

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL---P 343
           ++ MLVGNK D  + R+V   EG + A++ +++FIE SAK    V+  F  +   +   P
Sbjct: 122 IVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180

Query: 344 GMDSTENKP 352
           G+  +EN+ 
Sbjct: 181 GLWESENQN 189

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  183 bits (467), Expect = 2e-57
 Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 73/243 (30%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           + KL+ +G    GKT+L+ + M     +                          AT+GID
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGM---------------------QSATVGID 40

Query: 73  FLSKTMYLED---RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
                + + D   R + L +WD AG+E F S  P ++    + + VYD++   +      
Sbjct: 41  VKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAE----- 95

Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
                                                    W+ +++  R S   ++LVG
Sbjct: 96  -----------------------------------VDAMKPWLFNIK-ARASSSPVILVG 119

Query: 190 NKTDLSDKRQ---VSTEEGERKAKELNVMFI-----ETSAKAGYNVKQVRLQLWDTAGQE 241
              D+SD++Q     ++  +    +     I       + +    + ++R  + + +   
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179

Query: 242 RFR 244
           + R
Sbjct: 180 KIR 182

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  139 bits (352), Expect = 3e-40
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS-FHQTSKWIDDVRTE 282
               + + L +WD AG+E F S  P ++    + + VYD++   +       W+ +++  
Sbjct: 50  DKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK-A 108

Query: 283 RGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFI-----ETSAKAGYNVKQL 334
           R S   ++LVG   D+SD++Q     ++  +    +     I       + +    + +L
Sbjct: 109 RASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKL 168

Query: 335 FRRVAAALPGM 345
            + +       
Sbjct: 169 RKTIINESLNF 179

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  183 bits (466), Expect = 4e-57
 Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 42/185 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKTSL+ RF  D+F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQERF S+  +Y 
Sbjct: 37  VGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY 96

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDIT   +F    KW+  +                          +A+   
Sbjct: 97  RSAKGIILVYDITKKETFDDLPKWMKMIDK------------------------YAS--- 129

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGY 225
                          D  ++LVGNK D    R+++ ++GE+ A+++  + F E SAK  +
Sbjct: 130 --------------EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175

Query: 226 NVKQV 230
           NV ++
Sbjct: 176 NVDEI 180

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  157 bits (399), Expect = 4e-47
 Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 1/116 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K++RLQ+WDTAGQERF S+  +Y R +   ++VYDIT   +F    KW+  +      D 
Sbjct: 73  KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 342
            ++LVGNK D    R+++ ++GE+ A+++  + F E SAK  +NV ++F ++   +
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  183 bits (467), Expect = 6e-57
 Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 50/194 (25%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQE 96
           VGKT+ + R+  + F+  +  T+GIDF  K +    +           V LQLWDTAGQE
Sbjct: 36  VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE 95

Query: 97  RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
           RFRSL  ++ RD+   ++++D+T+  SF     W+  ++                     
Sbjct: 96  RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA-------------------- 135

Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
               +A                   +  I+L+GNK DL D+R+V+  +    A +  + +
Sbjct: 136 ----NAYC----------------ENPDIVLIGNKADLPDQREVNERQARELADKYGIPY 175

Query: 217 IETSAKAGYNVKQV 230
            ETSA  G NV++ 
Sbjct: 176 FETSAATGQNVEKA 189

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  158 bits (402), Expect = 3e-47
 Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 218 ETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 277
           +    +     +V LQLWDTAGQERFRSL  ++ RD+   ++++D+T+  SF     W+ 
Sbjct: 72  QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 131

Query: 278 DVRT-ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 336
            ++      +  I+L+GNK DL D+R+V+  +    A +  + + ETSA  G NV++   
Sbjct: 132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVE 191

Query: 337 RVAAAL 342
            +   +
Sbjct: 192 TLLDLI 197

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  181 bits (463), Expect = 6e-57
 Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 42/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF+ D F+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQERFR++  +Y 
Sbjct: 14  VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 73

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDIT+  +F    +W   V                          HAN   
Sbjct: 74  RGAMGIILVYDITDERTFTNIKQWFKTVNE------------------------HAN--- 106

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +  ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   N
Sbjct: 107 --------------DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 151

Query: 227 VKQV 230
           V ++
Sbjct: 152 VNEI 155

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  157 bits (399), Expect = 2e-47
 Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V+LQ+WDTAGQERFR++  +Y R +   ++VYDIT+  +F    +W   V      + 
Sbjct: 50  KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA 109

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   NV ++F  +A  +
Sbjct: 110 QLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  182 bits (463), Expect = 1e-56
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 50/194 (25%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQE 96
           VGKTS++ ++    F++ +  T+GIDF  K +              + + LQLWDTAG E
Sbjct: 22  VGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81

Query: 97  RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH 156
           RFRSL  ++ RD+   ++++D+TN  SF     WI  ++                     
Sbjct: 82  RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM-------------------- 121

Query: 157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF 216
               HA S                 +  I+L GNK+DL D+R V  EE    A++  + +
Sbjct: 122 ----HAYS----------------ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY 161

Query: 217 IETSAKAGYNVKQV 230
            ETSA  G N+   
Sbjct: 162 FETSAANGTNISHA 175

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  160 bits (408), Expect = 2e-48
 Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 2/136 (1%)

Query: 208 KAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN 267
           + K +           G   +++ LQLWDTAG ERFRSL  ++ RD+   ++++D+TN  
Sbjct: 49  REKRVVYRANGPDGAVGRG-QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQ 107

Query: 268 SFHQTSKWIDDVRTERGS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326
           SF     WI  ++    S +  I+L GNK+DL D+R V  EE    A++  + + ETSA 
Sbjct: 108 SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167

Query: 327 AGYNVKQLFRRVAAAL 342
            G N+      +   +
Sbjct: 168 NGTNISHAIEMLLDLI 183

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  180 bits (460), Expect = 6e-56
 Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 42/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF+ D F+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQERFR++  +Y 
Sbjct: 31  VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYY 90

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYD+T+  +F    +W   V                          HAN   
Sbjct: 91  RGAMGIILVYDVTDERTFTNIKQWFKTVNE------------------------HAN--- 123

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          +  ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   N
Sbjct: 124 --------------DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 168

Query: 227 VKQV 230
           V ++
Sbjct: 169 VNEI 172

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  155 bits (395), Expect = 2e-46
 Identities = 48/115 (41%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V+LQLWDTAGQERFR++  +Y R +   ++VYD+T+  +F    +W   V      + 
Sbjct: 67  KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA 126

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   NV ++F  +A  +
Sbjct: 127 QLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  179 bits (457), Expect = 1e-55
 Identities = 39/185 (21%), Positives = 73/185 (39%), Gaps = 41/185 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-Y 105
           VGK++L   F     D+ ++     D   + + ++   V L ++D   Q      +    
Sbjct: 34  VGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHC 93

Query: 106 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF 165
           ++     ++V+ +T+  SF +  + +  +R  R                           
Sbjct: 94  LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH------------------------ 129

Query: 166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY 225
                           D+ ++LVGNK+DL+  R+VS EEG   A  L+   IETSA   +
Sbjct: 130 ----------------DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHH 173

Query: 226 NVKQV 230
           N +++
Sbjct: 174 NTREL 178

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  151 bits (385), Expect = 5e-45
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPS-YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD 286
           ++V L ++D   Q      +    ++     ++V+ +T+  SF +  + +  +R  R   
Sbjct: 70  EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129

Query: 287 -VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            + ++LVGNK+DL+  R+VS EEG   A  L+   IETSA   +N ++LF    
Sbjct: 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 183

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  176 bits (448), Expect = 8e-55
 Identities = 49/217 (22%), Positives = 79/217 (36%), Gaps = 65/217 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           +K++ LG   VGK++L   F                            D       G  +
Sbjct: 3   YKVLLLGAPGVGKSALARIFG------------------------GVEDGPEAEAAGHTY 38

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
             +++ ++     L ++D   Q+  R L    +      V+VY +T+  SF + S+    
Sbjct: 39  -DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ 97

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +R  R +D                                        DV I+LVGNK+D
Sbjct: 98  LRRARQTD----------------------------------------DVPIILVGNKSD 117

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           L   R+VS +EG   A   +  FIETSA   +NV+ +
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL 154

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  154 bits (392), Expect = 2e-46
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           ++  L ++D   Q+  R L    +      V+VY +T+  SF + S+    +R  R +D 
Sbjct: 47  EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD 106

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           V I+LVGNK+DL   R+VS +EG   A   +  FIETSA   +NV+ LF  V 
Sbjct: 107 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  175 bits (446), Expect = 5e-54
 Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 64/221 (28%)

Query: 10  PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
            +R  K+V LG + VGKTSL  +F+   F   Y                D        T+
Sbjct: 21  LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----------------DP-------TV 57

Query: 70  GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
              + SK + L      L L DTAGQ+ +  L  S+I      V+VY +T+ +SF     
Sbjct: 58  ENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES 116

Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
               +    G                                           V ++LVG
Sbjct: 117 LYQKLHEGHGKT----------------------------------------RVPVVLVG 136

Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           NK DLS +R+V   EG++ A+     F+E+SA+     + +
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  152 bits (387), Expect = 3e-45
 Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
            +  L L DTAGQ+ +  L  S+I      V+VY +T+ +SF         +    G   
Sbjct: 70  DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
           V ++LVGNK DLS +R+V   EG++ A+     F+E+SA+     + +F +V   +  ++
Sbjct: 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189

Query: 347 STENK 351
           ++  +
Sbjct: 190 NSYGQ 194

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  174 bits (443), Expect = 6e-54
 Identities = 47/219 (21%), Positives = 81/219 (36%), Gaps = 63/219 (28%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
             +++   G   VGK+SL+ RF+  +F  +Y  T+                         
Sbjct: 2   NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-----------------------ED 38

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
            +  + +  +     LQ+ DT G  +F ++    I      ++VY IT+  S  +     
Sbjct: 39  TY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIY 97

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
           +                                       I +++ +    + IMLVGNK
Sbjct: 98  EQ--------------------------------------ICEIKGDV-ESIPIMLVGNK 118

Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            D S  R+V + E E  A+     F+ETSAK  +NVK++
Sbjct: 119 CDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKEL 157

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  149 bits (379), Expect = 2e-44
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-- 285
               LQ+ DT G  +F ++    I      ++VY IT+  S  +     + +   +G   
Sbjct: 49  SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE 108

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            + IMLVGNK D S  R+V + E E  A+     F+ETSAK  +NVK+LF+ + 
Sbjct: 109 SIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  174 bits (443), Expect = 1e-53
 Identities = 61/231 (26%), Positives = 97/231 (41%), Gaps = 65/231 (28%)

Query: 1   MSSSGDFG-NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYD 59
           +S  G    N L   K++ +G   VGK++L  +FMYD F   Y+ T              
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK------------- 51

Query: 60  SFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
                        +  K + L+   V++ + DTAGQE + ++  +Y R     + V+ IT
Sbjct: 52  ----------ADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT 100

Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
              SF  T+ + + +   +  +                                      
Sbjct: 101 EMESFAATADFREQILRVKEDE-------------------------------------- 122

Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
             +V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   NV +V
Sbjct: 123 --NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  148 bits (377), Expect = 6e-44
 Identities = 42/113 (37%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           ++V++ + DTAGQE + ++  +Y R     + V+ IT   SF  T+ + + +   +  + 
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   NV ++F  + 
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  172 bits (439), Expect = 8e-53
 Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 67/232 (28%)

Query: 2   SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
            S     +    +++V +GEQ VGK++L   F                       ++DS 
Sbjct: 26  DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAG---------------------VHDSM 64

Query: 62  DNTYQATIGIDFLSKTMYLEDRTVR---LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 118
           D+  +     D   +T+ ++  +     L +W+  G+  +  L    ++     ++VY I
Sbjct: 65  DSDCEVLG-EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSI 121

Query: 119 TNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE 178
           T+  SF + S+    +R  R ++                                     
Sbjct: 122 TDRASFEKASELRIQLRRARQTE------------------------------------- 144

Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
              D+ I+LVGNK+DL   R+VS  EG   A   +  FIETSA   +NVK++
Sbjct: 145 ---DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  148 bits (375), Expect = 3e-43
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283
           G +   + L +W+  G+  +  L    ++     ++VY IT+  SF + S+    +R  R
Sbjct: 84  GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 141

Query: 284 GSD-VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            ++ + I+LVGNK+DL   R+VS  EG   A   +  FIETSA   +NVK+LF  + 
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  170 bits (432), Expect = 3e-52
 Identities = 51/222 (22%), Positives = 81/222 (36%), Gaps = 66/222 (29%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           +  +++V LG+  VGKTSL + F      + +                          +G
Sbjct: 2   MALYRVVLLGDPGVGKTSLASLFAGKQERDLH------------------------EQLG 37

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP--SYIRDSTVAVVVYDITNANSFHQTS 128
            D   +T+ ++     L + DT   E+        S ++  +  V+VY I +  SF   S
Sbjct: 38  EDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESAS 97

Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
           +    +R    +D                                         V I+LV
Sbjct: 98  ELRIQLRRTHQAD----------------------------------------HVPIILV 117

Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           GNK DL+  R+VS EEG   A   +  FIETSA   +NV ++
Sbjct: 118 GNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  144 bits (367), Expect = 1e-42
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 228 KQVRLQLWDTAGQERFRSLIP--SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS 285
           +   L + DT   E+        S ++  +  V+VY I +  SF   S+    +R    +
Sbjct: 50  EDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQA 109

Query: 286 D-VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           D V I+LVGNK DL+  R+VS EEG   A   +  FIETSA   +NV +LF  V 
Sbjct: 110 DHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  169 bits (431), Expect = 4e-52
 Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 64/220 (29%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           +R++K+V LG   VGK++L  +F+  +F   Y  TI                        
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE----------------------- 37

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
            DF  K + ++     L++ DTAG E+F S+   YI++    ++VY + N  SF      
Sbjct: 38  -DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPM 96

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
            D +   +  +                                         V ++LVGN
Sbjct: 97  RDQIIRVKRYE----------------------------------------KVPVILVGN 116

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           K DL  +R+VS+ EG   A+E    F+ETSAK+   V ++
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDEL 156

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  144 bits (367), Expect = 1e-42
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 1/113 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
               L++ DTAG E+F S+   YI++    ++VY + N  SF       D +   +  + 
Sbjct: 49  SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK 108

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           V ++LVGNK DL  +R+VS+ EG   A+E    F+ETSAK+   V +LF  + 
Sbjct: 109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  169 bits (431), Expect = 4e-52
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 64/220 (29%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           L   K++ +G   VGK++L  +FMYD F   Y+ T                         
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-----------------------A 38

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
             +  K + L+   V++ + DTAGQE + ++  +Y R     + V+ IT   SF  T+ +
Sbjct: 39  DSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADF 97

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
            + +   +  +                                        +V  +LVGN
Sbjct: 98  REQILRVKEDE----------------------------------------NVPFLLVGN 117

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           K+DL DKRQVS EE + +A + NV ++ETSAK   NV +V
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKV 157

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  146 bits (371), Expect = 4e-43
 Identities = 42/113 (37%), Positives = 69/113 (61%), Gaps = 1/113 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           ++V++ + DTAGQE + ++  +Y R     + V+ IT   SF  T+ + + +   +  + 
Sbjct: 50  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 109

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           V  +LVGNK+DL DKRQVS EE + +A + NV ++ETSAK   NV ++F  + 
Sbjct: 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  170 bits (433), Expect = 5e-52
 Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 65/231 (28%)

Query: 1   MSSSGDFG-NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYD 59
           M+++   G N L   K++ +G   VGK++L  +FMYD F   Y                +
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----------------E 44

Query: 60  SFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 119
                   T    +  K + L+   V++ + DTAGQE + ++  +Y R     + V+ IT
Sbjct: 45  P-------TKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSIT 96

Query: 120 NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
              SF  T+ + + +   +  +                                      
Sbjct: 97  EMESFAATADFREQILRVKEDE-------------------------------------- 118

Query: 180 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
             +V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   NV +V
Sbjct: 119 --NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  145 bits (367), Expect = 3e-42
 Identities = 42/113 (37%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           ++V++ + DTAGQE + ++  +Y R     + V+ IT   SF  T+ + + +   +  + 
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           V  +LVGNK+DL DKRQVS EE + +A++ NV ++ETSAK   NV ++F  + 
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  168 bits (429), Expect = 9e-52
 Identities = 55/221 (24%), Positives = 82/221 (37%), Gaps = 64/221 (28%)

Query: 10  PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
             +  K+  LG +SVGK+SL  +F+   F ++Y                D        TI
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----------------DP-------TI 39

Query: 70  GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
              F +K + +  +   LQL DTAGQ+ +     +Y  D    ++VY +T+  SF     
Sbjct: 40  ENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKV 98

Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
               +    G                                           + IMLVG
Sbjct: 99  IHGKLLDMVGKV----------------------------------------QIPIMLVG 118

Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           NK DL  +R +S EEG+  A+  N  F+E+SAK       V
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  146 bits (371), Expect = 4e-43
 Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 1/125 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           ++  LQL DTAGQ+ +     +Y  D    ++VY +T+  SF         +    G   
Sbjct: 52  QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ 111

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
           + IMLVGNK DL  +R +S EEG+  A+  N  F+E+SAK       +FRR+      MD
Sbjct: 112 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171

Query: 347 STENK 351
              ++
Sbjct: 172 GACSQ 176

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  174 bits (442), Expect = 4e-50
 Identities = 38/263 (14%), Positives = 81/263 (30%), Gaps = 79/263 (30%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
             S G+    L++ K+  +G+   GKTSL+ + + ++FD     T               
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTH-------------- 74

Query: 61  FDNTYQATIGIDFLSKTMYL--------EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 112
                    G++ ++K            E +      WD  GQE   +    ++  S+V 
Sbjct: 75  ---------GLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY 125

Query: 113 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI 172
           +++ D     +      W+  +                                      
Sbjct: 126 MLLLDSR---TDSNKHYWLRHIE------------------------------------- 145

Query: 173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232
                + G    +++V NK D +    +  ++   +   +   F   S K G  V+ +  
Sbjct: 146 -----KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAK 200

Query: 233 QLWDTA--GQERFRSLIP-SYIR 252
            L          + + +  S+I+
Sbjct: 201 SLKSAVLHPDSIYGTPLAPSWIK 223

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  153 bits (387), Expect = 3e-42
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 19/180 (10%)

Query: 185 IMLVGN----KTDL--------SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232
           + L+G+    KT L         D ++  T       K+          +    +K+   
Sbjct: 44  VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQA---PNIKGLENDDELKECLF 100

Query: 233 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLV 292
             WD  GQE   +    ++  S+V +++ D     +      W+  +  + G    +++V
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE-KYGGKSPVIVV 156

Query: 293 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKP 352
            NK D +    +  ++   +   +   F   S K G  V+ + + + +A+   DS    P
Sbjct: 157 MNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYGTP 216

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  163 bits (416), Expect = 1e-49
 Identities = 52/221 (23%), Positives = 79/221 (35%), Gaps = 64/221 (28%)

Query: 10  PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
           P    KLV +G   VGK++L  +F+   F + Y  TI                       
Sbjct: 6   PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE---------------------- 43

Query: 70  GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
             D  +K   ++    RL + DTAGQE F ++   Y+R     ++V+ I +  SF++  K
Sbjct: 44  --DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK 101

Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
               +   +  D                                        D  ++LVG
Sbjct: 102 LFTQILRVKDRD----------------------------------------DFPVVLVG 121

Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           NK DL  +RQV   E        +V + E SAK   NV + 
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  144 bits (366), Expect = 2e-42
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
              RL + DTAGQE F ++   Y+R     ++V+ I +  SF++  K    +   +  D 
Sbjct: 55  IPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD 114

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 346
             ++LVGNK DL  +RQV   E        +V + E SAK   NV + F ++  A+    
Sbjct: 115 FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174

Query: 347 STENKP 352
             E  P
Sbjct: 175 EQELPP 180

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  162 bits (413), Expect = 2e-49
 Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 65/231 (28%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           M++S      L  +KLV +G+  VGK++L  +F    F + Y                D 
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----------------DP 49

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
                  TI  D   K   ++++   L + DTAGQE F ++   Y+R     ++VY +T+
Sbjct: 50  -------TIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD 101

Query: 121 ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
             SF    ++   +   +  +                                       
Sbjct: 102 KASFEHVDRFHQLILRVKDRE--------------------------------------- 122

Query: 181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG-YNVKQV 230
               ++LV NK DL   R+V+ ++G+  A + N+ +IETSAK    NV + 
Sbjct: 123 -SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  138 bits (349), Expect = 9e-40
 Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 2/114 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           +   L + DTAGQE F ++   Y+R     ++VY +T+  SF    ++   +   +  + 
Sbjct: 64  QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG-YNVKQLFRRVA 339
             ++LV NK DL   R+V+ ++G+  A + N+ +IETSAK    NV + F  + 
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  160 bits (406), Expect = 4e-48
 Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 67/223 (30%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           +  +++V +GEQ VGK++L   F                                   +G
Sbjct: 4   MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS----------------------DXEVLG 41

Query: 71  IDFLSKTMYLEDRT---VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
            D   +T+ ++  +   + L +W+  G+  +  L    ++     ++VY IT+  SF + 
Sbjct: 42  EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99

Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
           S+    +R  R ++                                        D+ I+L
Sbjct: 100 SELRIQLRRARQTE----------------------------------------DIPIIL 119

Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           VGNK+DL   R+VS  EG   A   +  FIETSA   +NVK++
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  138 bits (350), Expect = 7e-40
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 3/131 (2%)

Query: 224 GYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283
           G +   + L +W+  G+  +  L    ++     ++VY IT+  SF + S+    +R  R
Sbjct: 53  GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 110

Query: 284 GSD-VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            ++ + I+LVGNK+DL   R+VS  EG   A   +  FIETSA   +NVK+LF  +   +
Sbjct: 111 QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

Query: 343 PGMDSTENKPP 353
                ++ K  
Sbjct: 171 RLRRDSKEKNE 181

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  160 bits (406), Expect = 5e-48
 Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 64/221 (28%)

Query: 10  PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
               +++V  G   VGK+SL+ RF+  +F +TY  TI               ++TY+  I
Sbjct: 5   QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTI---------------EDTYRQVI 49

Query: 70  GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
             D              LQ+ DT G  +F ++    I      ++V+ +T+  S  +   
Sbjct: 50  SCD---------KSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGP 100

Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
                                                     I  ++     D+ +MLVG
Sbjct: 101 IYK--------------------------------------LIVQIK-GSVEDIPVMLVG 121

Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           NK D   +R+V T E +  A+E    F+ETSAK  YNVK++
Sbjct: 122 NKCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKEL 161

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  137 bits (348), Expect = 2e-39
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR--TERGS 285
               LQ+ DT G  +F ++    I      ++V+ +T+  S  +       +        
Sbjct: 54  SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE 113

Query: 286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           D+ +MLVGNK D   +R+V T E +  A+E    F+ETSAK  YNVK+LF+ + 
Sbjct: 114 DIPVMLVGNKCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  156 bits (396), Expect = 5e-47
 Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 65/220 (29%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           + ++KLV +G   VGK++L               TI        + + + F +    TI 
Sbjct: 1   MTEYKLVVVGAGGVGKSAL---------------TI--------QLIQNHFVDECDPTIE 37

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
             +  K + ++  T  L + DTAGQE + ++   Y+R     + V+ I N  SF    ++
Sbjct: 38  DSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
            + ++  + SD                                        DV ++LVGN
Sbjct: 97  REQIKRVKDSD----------------------------------------DVPMVLVGN 116

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           K+DL   R V + + +  A+   + +IETSAK    V+  
Sbjct: 117 KSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDA 155

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  134 bits (341), Expect = 7e-39
 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           +   L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + ++  + SD 
Sbjct: 49  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDD 108

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           V ++LVGNK+DL   R V + + +  A+   + +IETSAK    V+  F  + 
Sbjct: 109 VPMVLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  154 bits (392), Expect = 4e-46
 Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 65/225 (28%)

Query: 6   DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
            +   + ++KLV +G   VGK++L               TI        + + + F + Y
Sbjct: 14  LYFQGMTEYKLVVVGAGGVGKSAL---------------TI--------QLIQNHFVDEY 50

Query: 66  QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 125
             TI   +  K + ++  T  L + DTAGQE + ++   Y+R     + V+ I N+ SF 
Sbjct: 51  DPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFA 109

Query: 126 QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
             + + + ++  + SD                                        DV +
Sbjct: 110 DINLYREQIKRVKDSD----------------------------------------DVPM 129

Query: 186 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           +LVGNK DL   R V T++    AK   + FIETSAK    V+  
Sbjct: 130 VLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  132 bits (335), Expect = 1e-37
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           +   L + DTAGQE + ++   Y+R     + V+ I N+ SF   + + + ++  + SD 
Sbjct: 67  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDD 126

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           V ++LVGNK DL   R V T++    AK   + FIETSAK    V+  F  + 
Sbjct: 127 VPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  154 bits (391), Expect = 6e-46
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 42/184 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK++L  + + + F + Y  TI   +  K + ++  T  L + DTAGQE + ++   Y+
Sbjct: 15  VGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 73

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R     + V+ I N  SF     + + ++  + S+                         
Sbjct: 74  RTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSE------------------------- 108

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          DV ++LVGNK DL   R V T++ +  A+   + FIETSAK    
Sbjct: 109 ---------------DVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQG 152

Query: 227 VKQV 230
           V   
Sbjct: 153 VDDA 156

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  133 bits (336), Expect = 7e-38
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 2/113 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           +   L + DTAGQE + ++   Y+R     + V+ I N  SF     + + ++  + S+ 
Sbjct: 50  ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED 109

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           V ++LVGNK DL   R V T++ +  A+   + FIETSAK    V   F  + 
Sbjct: 110 VPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  153 bits (388), Expect = 8e-46
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 65/221 (29%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           +R++KLV LG   VGK++L  +F+   F   Y                D        TI 
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKY----------------DP-------TIE 37

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
             +  K + ++ +   L++ DTAG E+F ++   Y+++     +VY IT  ++F+     
Sbjct: 38  DSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
            + +   + ++                                        DV ++LVGN
Sbjct: 97  REQILRVKDTE----------------------------------------DVPMILVGN 116

Query: 191 KTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQV 230
           K DL D+R V  E+G+  A++  N  F+E+SAK+  NV ++
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  133 bits (336), Expect = 5e-38
 Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 2/114 (1%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           +Q  L++ DTAG E+F ++   Y+++     +VY IT  ++F+      + +   + ++ 
Sbjct: 49  QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED 108

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLFRRVA 339
           V ++LVGNK DL D+R V  E+G+  A++  N  F+E+SAK+  NV ++F  + 
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  153 bits (390), Expect = 9e-46
 Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 64/223 (28%)

Query: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
               +  L  LG +  GK++L  +F+   F + Y   +               ++TY + 
Sbjct: 17  QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNL---------------EDTYSSE 61

Query: 69  IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
             +D          + V L++ DTA  +  R+    Y+  +   +VVY + +  SF  +S
Sbjct: 62  ETVD---------HQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSS 111

Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
            +++                                       +     E    +  +L+
Sbjct: 112 SYLEL--------------------------------------LALHAKETQRSIPALLL 133

Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQV 230
           GNK D++  RQV+  EG   A     +F E SA   + +V+ V
Sbjct: 134 GNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  131 bits (332), Expect = 3e-37
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW---IDDVRTERG 284
           + V L++ DTA  +  R+    Y+  +   +VVY + +  SF  +S +   +     E  
Sbjct: 67  QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ 125

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQLFRRVA 339
             +  +L+GNK D++  RQV+  EG   A     +F E SA   + +V+ +F    
Sbjct: 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  152 bits (387), Expect = 3e-45
 Identities = 56/223 (25%), Positives = 83/223 (37%), Gaps = 66/223 (29%)

Query: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
               + KL   G   VGK++L+ RF+   F                   YD        T
Sbjct: 24  AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE----------------YDP-------T 60

Query: 69  IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
           +   +      ++D  V +++ DTAGQE        ++R     V+VYDIT+  SF +  
Sbjct: 61  LESTY-RHQATIDDEVVSMEILDTAGQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVL 118

Query: 129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLV 188
              + +   +                                           +V ++LV
Sbjct: 119 PLKNILDEIKKPK----------------------------------------NVTLILV 138

Query: 189 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQV 230
           GNK DL   RQVSTEEGE+ A EL   F E SA  G  N+ ++
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  131 bits (333), Expect = 3e-37
 Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           + V +++ DTAGQE        ++R     V+VYDIT+  SF +     + +   +    
Sbjct: 74  EVVSMEILDTAGQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN 132

Query: 287 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQLFRRVA 339
           V ++LVGNK DL   RQVSTEEGE+ A EL   F E SA  G  N+ ++F  + 
Sbjct: 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  141 bits (358), Expect = 5e-41
 Identities = 51/233 (21%), Positives = 85/233 (36%), Gaps = 70/233 (30%)

Query: 2   SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
           + +G   N  +  K+V +G+ +VGKT L+  F        Y  T+              F
Sbjct: 12  TGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--------------F 57

Query: 62  DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
           +N +   +            +    L LWDTAGQE +  L P    DS V ++ + + N 
Sbjct: 58  EN-FSHVMKYK---------NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR 107

Query: 122 NSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            SF   ++KW  +++                        H+                   
Sbjct: 108 TSFDNISTKWEPEIK------------------------HYI------------------ 125

Query: 181 SDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
                +LVG K DL       V+ +EG+   ++L  V +IE S+ A   + +V
Sbjct: 126 DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV 178

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  119 bits (300), Expect = 1e-32
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
           +F   S    Y  ++  L LWDTAGQE +  L P    DS V ++ + + N  SF   ++
Sbjct: 56  VFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNIST 115

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKELN-VMFIETSAKAGYN 330
           KW  +++         +LVG K DL       V+ +EG+   ++L  V +IE S+ A   
Sbjct: 116 KWEPEIK-HYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174

Query: 331 VKQLFRRVA-AAL 342
           + ++F +      
Sbjct: 175 LNEVFEKSVDCIF 187

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  140 bits (354), Expect = 2e-40
 Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 73/222 (32%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
            + K+  +G  S GK++L+ R++  ++                      F          
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG------------GRF---------- 56

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
               K + ++ ++  L + D  G    +     +       V V+ + +  SF     + 
Sbjct: 57  ---KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYF 108

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
             + + R +                                         +V ++LVG +
Sbjct: 109 LRLCSFRNAS----------------------------------------EVPMVLVGTQ 128

Query: 192 TDLS--DKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
             +S  + R +      + + +L    + ET A  G NV++V
Sbjct: 129 DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  123 bits (310), Expect = 5e-34
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           +   L + D  G    +     +       V V+ + +  SF     +   + + R +  
Sbjct: 65  QSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE 119

Query: 288 I-IMLVGNKTDLS--DKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA 339
           + ++LVG +  +S  + R +      + + +L    + ET A  G NV+++F+ VA
Sbjct: 120 VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  135 bits (342), Expect = 7e-39
 Identities = 38/226 (16%), Positives = 69/226 (30%), Gaps = 73/226 (32%)

Query: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
             + + +L  LG+   GK+SLI RF+  S+                           + T
Sbjct: 3   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQ------------------------VLEKT 38

Query: 69  IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS 128
              +   K M ++ +T  + + + AG    +     +   +   + V+ + + NSF   S
Sbjct: 39  ES-EQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVS 92

Query: 129 KW---IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVII 185
           +    +  +R E    + + LVG                                     
Sbjct: 93  RLHGQLSSLRGEGRGGLALALVG------------------------------------- 115

Query: 186 MLVGNKTDLSDKRQVSTEEGER-KAKELNVMFIETSAKAGYNVKQV 230
               ++   S  R V         A      + ET A  G NV +V
Sbjct: 116 --TQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  111 bits (279), Expect = 1e-29
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 11/118 (9%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD- 286
           +   + + + AG    +     +   +   + V+ + + NSF   S+    + + RG   
Sbjct: 52  QTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGR 106

Query: 287 ----VIIMLVGNKTDLSDKRQVSTEEGER-KAKELNVMFIETSAKAGYNVKQLFRRVA 339
               + ++   ++   S  R V         A      + ET A  G NV ++F+ VA
Sbjct: 107 GGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  125 bits (316), Expect = 5e-35
 Identities = 59/231 (25%), Positives = 93/231 (40%), Gaps = 78/231 (33%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN + A + +
Sbjct: 7   RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV--------------FDN-FSANVVV 51

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKW 130
           +           TV L LWDTAGQE +  L P   R + V ++ + + +  S+   + KW
Sbjct: 52  N---------GATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW 102

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           I +++                        H+A                    V I+LVG 
Sbjct: 103 IPELK------------------------HYA------------------PGVPIVLVGT 120

Query: 191 KTDLSDKRQ----------VSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
           K DL D +Q          ++T +GE   K +    +IE S+K+  NVK V
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV 171

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  109 bits (275), Expect = 4e-29
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 13/133 (9%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
           +F   SA    N   V L LWDTAGQE +  L P   R + V ++ + + +  S+   + 
Sbjct: 41  VFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK 100

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELN-VMFIE 322
           KWI +++      V I+LVG K DL D +Q          ++T +GE   K +    +IE
Sbjct: 101 KWIPELK-HYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159

Query: 323 TSAKAGYNVKQLF 335
            S+K+  NVK +F
Sbjct: 160 CSSKSQENVKGVF 172

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  125 bits (317), Expect = 7e-35
 Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 76/229 (33%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +  K V +G+ +VGKT ++  +  + F   Y  T+              FDN + A + +
Sbjct: 8   KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--------------FDN-FSANVAV 52

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKW 130
           D          + V L LWDTAGQE +  L P   R + + V+ + + +  S+     KW
Sbjct: 53  D---------GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKW 103

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           + ++R                          A                   +V I+LVG 
Sbjct: 104 MPELR------------------------RFA------------------PNVPIVLVGT 121

Query: 191 KTDLSD--------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
           K DL D           +++ +GE   K++    +IE S+K   NVK V
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAV 170

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  108 bits (273), Expect = 2e-28
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 11/118 (9%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           + V L LWDTAGQE +  L P   R + + V+ + + +  S+     KW+ ++R     +
Sbjct: 55  QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PN 113

Query: 287 VIIMLVGNKTDLSD--------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF 335
           V I+LVG K DL D           +++ +GE   K++    +IE S+K   NVK +F
Sbjct: 114 VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  125 bits (315), Expect = 2e-34
 Identities = 56/244 (22%), Positives = 94/244 (38%), Gaps = 81/244 (33%)

Query: 2   SSSGDFGNP-LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           S +G+   P +R  K+V +G+   GKTSL+  F   +F  +Y  T+              
Sbjct: 22  SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-------------- 67

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           F+  Y   + +           + V L +WDTAGQ+ +  L P +  D++V ++ +D+T+
Sbjct: 68  FER-YMVNLQVK---------GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS 117

Query: 121 ANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
            NSF    ++W  +V                         H                   
Sbjct: 118 PNSFDNIFNRWYPEVN------------------------HFC----------------- 136

Query: 180 GSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYN 226
              V I++VG KTDL   +             V+   G+  A+ +  V ++E SA+   N
Sbjct: 137 -KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195

Query: 227 VKQV 230
           V  V
Sbjct: 196 VHAV 199

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  107 bits (269), Expect = 8e-28
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 15/135 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
           +F           K V L +WDTAGQ+ +  L P +  D++V ++ +D+T+ NSF    +
Sbjct: 67  VFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN 126

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMF 320
           +W  +V       V I++VG KTDL   +             V+   G+  A+ +  V +
Sbjct: 127 RWYPEVN-HFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185

Query: 321 IETSAKAGYNVKQLF 335
           +E SA+   NV  +F
Sbjct: 186 LECSARLHDNVHAVF 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  123 bits (311), Expect = 4e-34
 Identities = 57/243 (23%), Positives = 88/243 (36%), Gaps = 80/243 (32%)

Query: 2   SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
           S   +     +  K V +G+ +VGKT L+  +  ++F   Y  T+              F
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------F 64

Query: 62  DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
           DN Y A + +D          + V L LWDTAGQE +  L P     + V ++ + + + 
Sbjct: 65  DN-YSANVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 114

Query: 122 NSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            SF    +KW  +VR                        HH                   
Sbjct: 115 ASFENVRAKWYPEVR------------------------HHC------------------ 132

Query: 181 SDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNV 227
            +  I+LVG K DL D               ++  +G   AKE+  V ++E SA     +
Sbjct: 133 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192

Query: 228 KQV 230
           K V
Sbjct: 193 KTV 195

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  106 bits (265), Expect = 2e-27
 Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 16/143 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
           +F   SA    + K V L LWDTAGQE +  L P     + V ++ + + +  SF    +
Sbjct: 63  VFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRA 122

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
           KW  +VR     +  I+LVG K DL D               ++  +G   AKE+  V +
Sbjct: 123 KWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181

Query: 321 IETSAKAGYNVKQLFRRVA-AAL 342
           +E SA     +K +F     A L
Sbjct: 182 LECSALTQRGLKTVFDEAIRAVL 204

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  122 bits (307), Expect = 2e-33
 Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 80/243 (32%)

Query: 2   SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
                 G   R  K V +G+ +VGKTSL+  +  + +   Y  T               F
Sbjct: 9   GRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA--------------F 54

Query: 62  DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
           DN + A + +D          R VRLQL DTAGQ+ F  L P    ++ + ++ + + + 
Sbjct: 55  DN-FSAVVSVD---------GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP 104

Query: 122 NSFH-QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
           +SF   + KW+ ++R                         H                   
Sbjct: 105 SSFQNVSEKWVPEIR------------------------CHC------------------ 122

Query: 181 SDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNV 227
               I+LVG ++DL +  +            V  E  +  A+E+    +IE SA    N+
Sbjct: 123 PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNL 182

Query: 228 KQV 230
           K+V
Sbjct: 183 KEV 185

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  103 bits (258), Expect = 2e-26
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 15/122 (12%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH-QTSKWIDDVRTERGSD 286
           + VRLQL DTAGQ+ F  L P    ++ + ++ + + + +SF   + KW+ ++R      
Sbjct: 66  RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPK 124

Query: 287 VIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNVKQ 333
             I+LVG ++DL +  +            V  E  +  A+E+    +IE SA    N+K+
Sbjct: 125 APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184

Query: 334 LF 335
           +F
Sbjct: 185 VF 186

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  121 bits (305), Expect = 4e-33
 Identities = 56/244 (22%), Positives = 89/244 (36%), Gaps = 80/244 (32%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
           + +   +   + + KLV +G+ + GKT L+  F  D F   Y  T+              
Sbjct: 13  LGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-------------- 58

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
           F+N Y A I +D          + V L LWDTAGQE +  L P    D+ V ++ + + +
Sbjct: 59  FEN-YVADIEVD---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS 108

Query: 121 ANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTER 179
            +S      KW+ +V+                        H                   
Sbjct: 109 PDSLENIPEKWVPEVK------------------------HFC----------------- 127

Query: 180 GSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYN 226
             +V I+LV NK DL                 V T++G   A  +    ++E SAK    
Sbjct: 128 -PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186

Query: 227 VKQV 230
           V++V
Sbjct: 187 VREV 190

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  104 bits (260), Expect = 1e-26
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 15/135 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
           +F    A    + KQV L LWDTAGQE +  L P    D+ V ++ + + + +S      
Sbjct: 58  VFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE 117

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMF 320
           KW+ +V+     +V I+LV NK DL                 V T++G   A  +    +
Sbjct: 118 KWVPEVK-HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176

Query: 321 IETSAKAGYNVKQLF 335
           +E SAK    V+++F
Sbjct: 177 LECSAKTKEGVREVF 191

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  119 bits (301), Expect = 8e-33
 Identities = 49/238 (20%), Positives = 84/238 (35%), Gaps = 81/238 (34%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
            N   K K+V +G+   GKT+L+  F  D F   Y  T+              F+N Y A
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTA 46

Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ- 126
           +  ID          + + L LWDT+G   + ++ P    DS   ++ +DI+   +    
Sbjct: 47  SFEID---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 97

Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
             KW  +++                                              +  ++
Sbjct: 98  LKKWKGEIQ------------------------EFC------------------PNTKML 115

Query: 187 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAG-YNVKQV 230
           LVG K+DL              +  VS ++G   AK++    +IE SA     +V+ +
Sbjct: 116 LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  103 bits (258), Expect = 1e-26
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 16/136 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
           +F   +A    + +++ L LWDT+G   + ++ P    DS   ++ +DI+   +      
Sbjct: 40  VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 99

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
           KW  +++ E   +  ++LVG K+DL              +  VS ++G   AK++    +
Sbjct: 100 KWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 158

Query: 321 IETSAKAG-YNVKQLF 335
           IE SA     +V+ +F
Sbjct: 159 IECSALQSENSVRDIF 174

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  120 bits (302), Expect = 1e-32
 Identities = 59/232 (25%), Positives = 87/232 (37%), Gaps = 80/232 (34%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           + KLV +G+ + GKT L+  F  D F   Y  T+              F+N Y A I +D
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FEN-YIADIEVD 69

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWI 131
                     + V L LWDTAGQE +  L P    D+ V ++ + I + +S      KW 
Sbjct: 70  ---------GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT 120

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
            +V+                        H                     +V I+LVGNK
Sbjct: 121 PEVK------------------------HFC------------------PNVPIILVGNK 138

Query: 192 TDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
            DL              +  V +EEG   A  ++   ++E SAK    V++V
Sbjct: 139 KDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREV 190

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  106 bits (266), Expect = 1e-27
 Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 16/143 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
           +F    A    + KQV L LWDTAGQE +  L P    D+ V ++ + I + +S      
Sbjct: 58  VFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE 117

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
           KW  +V+     +V I+LVGNK DL              +  V +EEG   A  ++   +
Sbjct: 118 KWTPEVK-HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176

Query: 321 IETSAKAGYNVKQLFRRVA-AAL 342
           +E SAK    V+++F     A L
Sbjct: 177 LECSAKTKEGVREVFEMATRAGL 199

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  114 bits (287), Expect = 8e-31
 Identities = 58/237 (24%), Positives = 90/237 (37%), Gaps = 81/237 (34%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G+P +  K V +G+ +VGKT L+  +  ++F   Y  T+              FDN Y A
Sbjct: 1   GSP-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDN-YSA 44

Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ- 126
            + +D          + V L LWDTAGQE +  L P     + V+++ + + +  SF   
Sbjct: 45  NVMVD---------GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENV 95

Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
            +KW  +VR                        HH                    +  I+
Sbjct: 96  RAKWYPEVR------------------------HHC------------------PNTPII 113

Query: 187 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
           LVG K DL D               ++  +G   AKE+  V ++E SA     +K V
Sbjct: 114 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 170

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  103 bits (258), Expect = 2e-26
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)

Query: 212 LNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 271
           +  +F   SA    + K V L LWDTAGQE +  L P     + V+++ + + +  SF  
Sbjct: 35  IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94

Query: 272 -TSKWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN- 317
             +KW  +VR     +  I+LVG K DL D               ++  +G   AKE+  
Sbjct: 95  VRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 153

Query: 318 VMFIETSAKAGYNVKQLF 335
           V ++E SA     +K +F
Sbjct: 154 VKYLECSALTQRGLKTVF 171

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  113 bits (284), Expect = 3e-30
 Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 80/243 (32%)

Query: 2   SSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF 61
            SS   G      K V +G+ +VGKT L+  +  D+F   Y  T+              F
Sbjct: 7   RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV--------------F 52

Query: 62  DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
           D+ Y  ++ +           +   L L+DTAGQE +  L P     + V ++ + + N 
Sbjct: 53  DH-YAVSVTVG---------GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP 102

Query: 122 NSFH-QTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERG 180
            SF     +W+ +++                         +A                  
Sbjct: 103 ASFQNVKEEWVPELK------------------------EYA------------------ 120

Query: 181 SDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSAKAGYNV 227
            +V  +L+G + DL D  +            +  E+G++ AKE+    ++E SA     +
Sbjct: 121 PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGL 180

Query: 228 KQV 230
           K V
Sbjct: 181 KTV 183

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 99.5 bits (248), Expect = 4e-25
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 15/130 (11%)

Query: 220 SAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH-QTSKWIDD 278
           +       KQ  L L+DTAGQE +  L P     + V ++ + + N  SF     +W+ +
Sbjct: 56  AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 115

Query: 279 VRTERGSDVIIMLVGNKTDLSDKRQ------------VSTEEGERKAKELN-VMFIETSA 325
           ++ E   +V  +L+G + DL D  +            +  E+G++ AKE+    ++E SA
Sbjct: 116 LK-EYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174

Query: 326 KAGYNVKQLF 335
                +K +F
Sbjct: 175 LTQKGLKTVF 184

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  112 bits (282), Expect = 9e-30
 Identities = 48/233 (20%), Positives = 83/233 (35%), Gaps = 81/233 (34%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           K K+V +G+   GKT+L+  F  D F   Y  T+              F+N Y A+  ID
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FEN-YTASFEID 72

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWI 131
                     + + L LWDT+G   + ++ P    DS   ++ +DI+   +      KW 
Sbjct: 73  ---------TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 123

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
            +++                                              +  ++LVG K
Sbjct: 124 GEIQ------------------------EFC------------------PNTKMLLVGCK 141

Query: 192 TDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAG-YNVKQV 230
           +DL              +  VS ++G   AK++    +IE SA     +V+ +
Sbjct: 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 97.9 bits (244), Expect = 2e-24
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 16/136 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
           +F   +A    + +++ L LWDT+G   + ++ P    DS   ++ +DI+   +      
Sbjct: 61  VFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLK 120

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
           KW  +++ E   +  ++LVG K+DL              +  VS ++G   AK++    +
Sbjct: 121 KWKGEIQ-EFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179

Query: 321 IETSAKAG-YNVKQLF 335
           IE SA     +V+ +F
Sbjct: 180 IECSALQSENSVRDIF 195

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  109 bits (275), Expect = 1e-28
 Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 81/238 (34%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
              + + KLV +G+   GKT+++     D +  TY  T+              F+N Y A
Sbjct: 22  QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FEN-YTA 66

Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ- 126
            +  +         ++ V L LWDT+G   + ++ P    DS   ++ +DI+   +    
Sbjct: 67  CLETE---------EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSA 117

Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
             KW  ++                          +                       ++
Sbjct: 118 LKKWRTEIL------------------------DYC------------------PSTRVL 135

Query: 187 LVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAG-YNVKQV 230
           L+G KTDL              +  +S E+G   AK+L   +++E SA     ++  +
Sbjct: 136 LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 94.2 bits (234), Expect = 7e-23
 Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 16/136 (11%)

Query: 215 MFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TS 273
           +F   +A      ++V L LWDT+G   + ++ P    DS   ++ +DI+   +      
Sbjct: 60  VFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALK 119

Query: 274 KWIDDVRTERGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMF 320
           KW  ++  +      ++L+G KTDL              +  +S E+G   AK+L   ++
Sbjct: 120 KWRTEIL-DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178

Query: 321 IETSAKAG-YNVKQLF 335
           +E SA     ++  +F
Sbjct: 179 LEGSAFTSEKSIHSIF 194

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  101 bits (252), Expect = 4e-25
 Identities = 36/223 (16%), Positives = 79/223 (35%), Gaps = 24/223 (10%)

Query: 20  GEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY 79
           G+  +GK+ L  RF+  S D  +        S+++   +          +    +S++  
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHT----SVLSTSDFGGRVVNNDHFLYWGEVSRS-L 89

Query: 80  LEDRTVRLQLW-------DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
            +    ++ +        D   Q    + +  YI+          + +A          D
Sbjct: 90  EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKR----AAATKLASAEKLMYFCT--D 143

Query: 133 DVRTERGSDVIIMLVGSIETNFTHL----SFHHANSFHQTSKWIDDVRTERGSDVI-IML 187
            +  E+  +   M  G +  +   L    S     +F    K++ ++  +       I++
Sbjct: 144 QLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVV 203

Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           V  K D   +R +        +K+ N+  +ETSA++  NV   
Sbjct: 204 VLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLA 245

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 92.0 bits (228), Expect = 8e-22
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 235 WDTAGQERF--RSLIPSYIRDSTVAVVVYDITNAN--SFHQTSKWIDDVRTERGSDVI-I 289
            D  G E+   +  +P         ++  D++     +F    K++ ++  +       I
Sbjct: 142 TDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPI 201

Query: 290 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
           ++V  K D   +R +        +K+ N+  +ETSA++  NV   F  + 
Sbjct: 202 VVVLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLV 250

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 90.4 bits (224), Expect = 1e-20
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 15/122 (12%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD 286
           K V L LWDTAG E +  L P     + V ++ + + +  SFH   +KW  +VR     +
Sbjct: 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPN 259

Query: 287 VIIMLVGNKTDL----------SDKRQ--VSTEEGERKAKELN-VMFIETSAKAGYNVKQ 333
             I+LVG K DL           +K+   ++  +G   AKE+  V ++E SA     +K 
Sbjct: 260 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 319

Query: 334 LF 335
           +F
Sbjct: 320 VF 321

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 80.8 bits (199), Expect = 2e-17
 Identities = 54/236 (22%), Positives = 86/236 (36%), Gaps = 80/236 (33%)

Query: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQAT 68
                 K V +G+ +VGKT L+  +  ++F                 ++   FDN Y A 
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFP--------------GEYIPTVFDN-YSAN 195

Query: 69  IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-T 127
           + +D          + V L LWDTAG E +  L P     + V ++ + + +  SFH   
Sbjct: 196 VMVD---------GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVR 246

Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
           +KW  +VR                        HH                    +  I+L
Sbjct: 247 AKWYPEVR------------------------HHC------------------PNTPIIL 264

Query: 188 VGNKTDL----------SDKRQ--VSTEEGERKAKELN-VMFIETSAKAGYNVKQV 230
           VG K DL           +K+   ++  +G   AKE+  V ++E SA     +K V
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 53/230 (23%)

Query: 3   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD 62
           S+ +F N    FK+V+ G    GKT+ + +++Y       +  +V   +   R       
Sbjct: 4   STINFANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDER------- 55

Query: 63  NTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA 121
                T+  DFL   +  ++    R  L+   GQ  + +     +R     V V D    
Sbjct: 56  -----TLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA-- 108

Query: 122 NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
                        R    ++ +  +  ++      L                        
Sbjct: 109 -----------PNRLRANAESMRNMRENLAEYGLTL-----------------------D 134

Query: 182 DVIIMLVGNKTDLSDKRQVSTEEGERK-AKELNVMFIETSAKAGYNVKQV 230
           DV I++  NK DL D   +  E        E     +E  A  G  V + 
Sbjct: 135 DVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 20/159 (12%)

Query: 198 RQVSTEEGERKAKELNVMFIETSAKAGYNV----------KQVRLQLWDTAGQERFRSLI 247
           + + ++  E +  E+  +  E      ++            + R  L+   GQ  + +  
Sbjct: 32  KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91

Query: 248 PSYIRDSTVAVVVYDIT------NANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 301
              +R     V V D        NA S     + + +         I++ V NK DL D 
Sbjct: 92  KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV-NKRDLPD- 149

Query: 302 RQVSTEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVA 339
             +  E        E     +E  A  G  V +  + V+
Sbjct: 150 -ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVS 187

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 208 KAKELNVMFIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYD 262
           K K  N          G+++++         ++D +GQ R+R+L   Y ++    + V D
Sbjct: 40  KLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVID 99

Query: 263 ITNANSFHQTSKWIDDVRTE---RGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKEL 316
            ++        + +D +      +   + I+   NK DL D     +VS        K+ 
Sbjct: 100 SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK 159

Query: 317 NVMFIETSAKAGYNVKQ 333
                 + A  G  +++
Sbjct: 160 PWHICASDAIKGEGLQE 176

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 30/150 (20%)

Query: 1   MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDS 60
             SSG      ++  ++ LG  + GKT++I +       N     I+             
Sbjct: 9   HHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLK---PSNAQSQNIL------------- 52

Query: 61  FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 120
                  TIG  F  +    +  ++   ++D +GQ R+R+L   Y ++    + V D ++
Sbjct: 53  ------PTIG--FSIEK--FKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD 102

Query: 121 ANSFHQTSKWIDDVRTE---RGSDVIIMLV 147
                   + +D +      +   + I L 
Sbjct: 103 RLRMVVAKEELDTLLNHPDIKHRRIPI-LF 131

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 9/127 (7%)

Query: 216 FIETSAKAGYNV-----KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
            + T    G+NV     K +   +WD  GQ++ R L   Y +++   + V D  +     
Sbjct: 54  IVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQ 113

Query: 271 QTSKWIDDVRTERG-SDVIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETSAK 326
           +++  +  +  E    D ++++  NK D+ +     +++ + G +  +        T A 
Sbjct: 114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCAT 173

Query: 327 AGYNVKQ 333
            G  +  
Sbjct: 174 QGTGLYD 180

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+++ +        T   TIG  F  +T  +E + +   +WD  GQ++ R L   Y +
Sbjct: 41  GKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNICFTVWDVGGQDKIRPLWRHYFQ 95

Query: 108 DSTVAVVVYDITNANSFHQTSKWIDDVRTER 138
           ++   + V D  +     +++  +  +  E 
Sbjct: 96  NTQGLIFVVDSNDRERVQESADELQKMLQED 126

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 62/455 (13%), Positives = 130/455 (28%), Gaps = 149/455 (32%)

Query: 8   GNPLRKFKLVF--LGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTY 65
            + +     +F  L  +   +  ++ +F+ +     Y+            F+        
Sbjct: 58  KDAVSGTLRLFWTLLSK---QEEMVQKFVEEVLRINYK------------FLMSPIKTEQ 102

Query: 66  QATIGIDFLSKTMYLEDRTV--------------RLQLWDTAGQERFRSLIPS-YIR--- 107
           +    +      MY+E R                RLQ +    ++    L P+  +    
Sbjct: 103 RQPSMM----TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDG 157

Query: 108 -----DSTVAVVV---YDITNANSFHQTSKWIDDVRTERGSDVIIM---LVGSIETNFTH 156
                 + VA+ V   Y +     F     W++         V+ M   L+  I+ N+T 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 157 LSFHHANSFHQTSKW-------------------IDDVR----------------TERGS 181
            S H +N   +                       + +V+                T R  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 182 DVIIMLVGNKTDLSDKRQVSTEEG--ERKAKELNVMFIETSAKA---------------- 223
            V   L    T  +              + K L + +++   +                 
Sbjct: 276 QVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 224 GYNVKQ--VRLQLWDTAGQERFRSLI--------PSYIRDSTVAVVVYDITNANSFHQTS 273
             +++        W     ++  ++I        P+  R     + V+      S H  +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAHIPT 389

Query: 274 K-----WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE----LNVMFIETS 324
                 W D ++++      +M+V NK  L     V     E++ KE    +  +++E  
Sbjct: 390 ILLSLIWFDVIKSD------VMVVVNK--LHKYSLV-----EKQPKESTISIPSIYLELK 436

Query: 325 AKAGYNVKQLFRRVAAALPGMDSTEN----KPPED 355
            K   N   L R +        + ++     P  D
Sbjct: 437 VKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 9/119 (7%)

Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
           G+N++++      ++LWD  GQ RFRS+   Y R  +  V + D  +      +   + +
Sbjct: 56  GFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHN 115

Query: 279 V-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
           +    +   + ++++GNK DL     ++++  +      ++  +     S K   N+  
Sbjct: 116 LLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+ +       F+     T+G  F  +   +    V ++LWD  GQ RFRS+   Y R
Sbjct: 34  GKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQPRFRSMWERYCR 89

Query: 108 DSTVAVVVYD 117
             +  V + D
Sbjct: 90  GVSAIVYMVD 99

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
           G+N+K +     +L +WD  GQ+  RS   +Y   +   + V D  +        + +  
Sbjct: 51  GFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQS 110

Query: 279 V-RTERGSDVIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
           +   ER +   +++  NK DL        +         +  +      SA  G ++  
Sbjct: 111 LLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP 169

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+++ +F  +  D     T+G  F  KT  LE R  +L +WD  GQ+  RS   +Y  
Sbjct: 30  GKTTILKKFNGEDVDTI-SPTLG--FNIKT--LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84

Query: 108 DSTVAVVVYDITNANSFHQT 127
            +   + V D  +       
Sbjct: 85  STDGLIWVVDSADRQRMQDC 104

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 9/127 (7%)

Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
            + T    G+NV+ +     +L +WD  GQ   R     Y  D+   + V D T+ +   
Sbjct: 43  VVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMS 102

Query: 271 QTSKWIDDVRTERG-SDVIIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETSAK 326
             SK +  +  E    D  +++  NK D        +VS E    + K+ +   + +SA 
Sbjct: 103 TASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAI 162

Query: 327 AGYNVKQ 333
            G  + +
Sbjct: 163 KGEGITE 169

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+++ R        T + TIG  F  +T  L  + ++L +WD  GQ   R     Y  
Sbjct: 30  GKTTILYRLQIGEVVTT-KPTIG--FNVET--LSYKNLKLNVWDLGGQTSIRPYWRCYYA 84

Query: 108 DSTVAVVVYDITNANSFHQT 127
           D+   + V D T+ +     
Sbjct: 85  DTAAVIFVVDSTDKDRMSTA 104

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 13/129 (10%)

Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
            + T    G+NV+ V        +WD  GQ++ R L   Y +++   + V D  +    +
Sbjct: 25  IVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84

Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSDKRQVSTEE-----GERKAKELNVMFIETS 324
           +  + +  +   +   D ++++  NK DL +   ++  E     G    +  N     T 
Sbjct: 85  EAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATC 142

Query: 325 AKAGYNVKQ 333
           A +G  + +
Sbjct: 143 ATSGDGLYE 151

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+++ +        T   TIG  F  +T  +E + +   +WD  GQ++ R L   Y +
Sbjct: 12  GKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQ 66

Query: 108 DSTVAVVVYDITNANSFHQT 127
           ++   + V D  +    ++ 
Sbjct: 67  NTQGLIFVVDSNDRERVNEA 86

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
            + T    G+NV+ V     + Q+WD  G    R     Y  ++   + V D  + +   
Sbjct: 32  VVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIG 91

Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
            +   +  +   E     I+++  NK D+       +++   G    K+      +TSA 
Sbjct: 92  ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSAT 151

Query: 327 AGYNVKQ 333
            G  + +
Sbjct: 152 KGTGLDE 158

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+++ R        T   TIG  F  +T  +  + ++ Q+WD  G    R     Y  
Sbjct: 19  GKTTILYRLQVGEVVTT-IPTIG--FNVET--VTYKNLKFQVWDLGGLTSIRPYWRCYYS 73

Query: 108 DSTVAVVVYDITNANSFHQT 127
           ++   + V D  + +    +
Sbjct: 74  NTDAVIYVVDSCDRDRIGIS 93

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
            + TS   G NV+++     R  +WD  GQE  RS   +Y  ++   +VV D T+     
Sbjct: 41  VVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 100

Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
            T + +  +   E      +++  NK D+ +     ++S        K+         A 
Sbjct: 101 VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 160

Query: 327 AGYNVKQ 333
            G  + Q
Sbjct: 161 TGEGLCQ 167

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+++ +F  +   +T   TIG     +   +     R  +WD  GQE  RS   +Y  
Sbjct: 28  GKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQESLRSSWNTYYT 82

Query: 108 DSTVAVVVYDITNANSFHQT 127
           ++   +VV D T+      T
Sbjct: 83  NTEFVIVVVDSTDRERISVT 102

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 9/127 (7%)

Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
               +   G+N+K V     +L +WD  GQ + R    SY  ++ + + V D  +   F 
Sbjct: 41  ISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100

Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
           +T + + ++   E+ S V +++  NK DL       +++        ++        SA 
Sbjct: 101 ETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSAL 160

Query: 327 AGYNVKQ 333
            G  V+ 
Sbjct: 161 TGEGVQD 167

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+L+ +   +   +    T G  F  K+  ++ +  +L +WD  GQ + R    SY  
Sbjct: 28  GKTTLLKQLASEDISHI-TPTQG--FNIKS--VQSQGFKLNVWDIGGQRKIRPYWRSYFE 82

Query: 108 DSTVAVVVYD 117
           ++ + + V D
Sbjct: 83  NTDILIYVID 92

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
            + T    G N++ +       ++WD  GQ   R     Y  D+   + V D T+ +   
Sbjct: 47  VVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMG 106

Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
                +  +   +     ++++  NK DL D   + +++ + G           +++S+K
Sbjct: 107 VAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSK 166

Query: 327 AGYNVKQ 333
            G  + +
Sbjct: 167 TGDGLVE 173

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKTS++ R        T   T+G     +T  L+ + +  ++WD  GQ   R     Y  
Sbjct: 34  GKTSILYRLHLGDVVTT-VPTVG--VNLET--LQYKNISFEVWDLGGQTGVRPYWRCYFS 88

Query: 108 DSTVAVVVYDITNANSFHQT 127
           D+   + V D T+ +     
Sbjct: 89  DTDAVIYVVDSTDRDRMGVA 108

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 216 FIETSAKAGYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
            + TS   G NV+++     R  +WD  GQE  RS   +Y  ++   +VV D T+     
Sbjct: 46  VVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 105

Query: 271 QTSKWIDDV-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAK 326
            T + +  +   E      +++  NK D+ +     ++S        K+         A 
Sbjct: 106 VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 165

Query: 327 AGYNVKQ 333
            G  + Q
Sbjct: 166 TGEGLCQ 172

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+++ +F  +   +T   TIG     +   +     R  +WD  GQE  RS   +Y  
Sbjct: 33  GKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQESLRSSWNTYYT 87

Query: 108 DSTVAVVVYD 117
           ++   +VV D
Sbjct: 88  NTEFVIVVVD 97

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 45.8 bits (108), Expect = 9e-06
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDST-----VAVVVYDITNANSFHQTSKWIDDVR 280
            +  + L LWD  GQ+ F     +  +D       V + V+D+ +         +   ++
Sbjct: 48  FLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALK 107

Query: 281 TER--GSDVIIMLVGNKTDL--SDKRQVSTEEGERKAKEL-------NVMFIETSAKAGY 329
             R    D  I ++ +K DL   DKR+   +   +   E        N++   TS     
Sbjct: 108 QLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDES 167

Query: 330 NVKQLFRRVAAALPGMDSTEN 350
             K   + V + +P M + ++
Sbjct: 168 LYKAWSQIVCSLIPNMSNHQS 188

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 10  PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
           PL   KL+ +G    GK+S +   ++ ++       +                    ATI
Sbjct: 1   PLGS-KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRL-------------------GATI 39

Query: 70  GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST-----VAVVVYDITNANSF 124
            ++            + L LWD  GQ+ F     +  +D       V + V+D+ +    
Sbjct: 40  DVEHSHLRF---LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVL 96

Query: 125 HQTSKWIDDVRTER 138
                +   ++  R
Sbjct: 97  KDIEIFAKALKQLR 110

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKTSL+T    DS   T   +     LS   Y       + L D  G  + R  +  Y++
Sbjct: 60  GKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPGHVKLRYKLSDYLK 113

Query: 108 DSTVAV--VVYDI 118
                V  +++ +
Sbjct: 114 TRAKFVKGLIFMV 126

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 12/84 (14%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAV--VVYDI---TNANSFHQTSKWIDDV- 279
           +     + L D  G  + R  +  Y++     V  +++ +    +      T++++ D+ 
Sbjct: 87  DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDIL 146

Query: 280 ---RTERGSDVIIMLVGNKTDLSD 300
               +   + + I++  NK++L  
Sbjct: 147 SITESSCENGIDILIACNKSELFT 170

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKTSL+T    DS   T   +     LS   Y       + L D  G  + R  +  Y++
Sbjct: 24  GKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPGHVKLRYKLSDYLK 77

Query: 108 DSTVAV--VVYDI 118
                V  +++ +
Sbjct: 78  TRAKFVKGLIFMV 90

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 12/84 (14%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAV--VVYDI---TNANSFHQTSKWIDDV- 279
           +     + L D  G  + R  +  Y++     V  +++ +    +      T++++ D+ 
Sbjct: 51  DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDIL 110

Query: 280 ---RTERGSDVIIMLVGNKTDLSD 300
               +   + + I++  NK++L  
Sbjct: 111 SITESSCENGIDILIACNKSELFT 134

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           GKT L  R +   + +T Q +I     S       +R   L L D  G E  R  +    
Sbjct: 19  GKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRF 75

Query: 107 RDSTVAVV 114
           + S  AVV
Sbjct: 76  KSSARAVV 83

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 26/112 (23%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
            K +++ +G +  GK+S+     +                              ++T  I
Sbjct: 19  SKPRILLMGLRRSGKSSIQKVVFHK-----MSPNET---------------LFLESTNKI 58

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSTVAVVVYDITN 120
               K        V  Q+WD  GQ  F           R +   + V D  +
Sbjct: 59  Y---KDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD 107

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 230 VRLQLWDTAGQERFRSL---IPSYIRDSTVAVVVYDITNA--NSFHQTSKWIDDVRTERG 284
           V  Q+WD  GQ  F           R +   + V D  +    +  +    +     +  
Sbjct: 69  VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAY-KVN 127

Query: 285 SDVIIMLVGNKTDL--SDKRQVSTEEGERKAKE 315
            D+   +  +K D    D +  +  +  ++A +
Sbjct: 128 PDMNFEVFIHKVDGLSDDHKIETQRDIHQRAND 160

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
               +++         +D  G  + R +  +Y+      V + D  +     ++ + +D 
Sbjct: 58  HPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDS 117

Query: 279 V-RTERGSDVIIMLVGNKTDLSD 300
           +   E  ++V I+++GNK D  +
Sbjct: 118 LMTDETIANVPILILGNKIDRPE 140

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+L+     D        T+     S+   L    +    +D  G  + R +  +Y+ 
Sbjct: 37  GKTTLLHMLKDDRLGQH-VPTLH--PTSEE--LTIAGMTFTTFDLGGHIQARRVWKNYLP 91

Query: 108 DSTVAVVVYD 117
                V + D
Sbjct: 92  AINGIVFLVD 101

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 17/135 (12%)

Query: 226 NVKQVRLQLWDTAGQ-------ERF---RSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 275
              +   +L DTAG        E     RS     + ++ + + + D+       + ++ 
Sbjct: 277 IHDKTMFRLTDTAGLREAGEEIEHEGIRRSR--MKMAEADLILYLLDLGTERLDDELTEI 334

Query: 276 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 335
            +       +  +   V NK D +     +       A       I  SA  G  +  L 
Sbjct: 335 RELKAAHPAAKFLT--VANKLDRAAN---ADALIRAIADGTGTEVIGISALNGDGIDTLK 389

Query: 336 RRVAAALPGMDSTEN 350
           + +   +  +D    
Sbjct: 390 QHMGDLVKNLDKLHE 404

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
           G+NV+ V        +WD  GQ++ R L   Y +++   + V D  +    ++  + +  
Sbjct: 198 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 257

Query: 279 V-RTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 333
           +   +   D ++++  NK DL +     +++ + G    +  N     T A +G  + +
Sbjct: 258 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 224 GYNVKQV-----RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 278
               +++     +   +D  G  + R L   Y  +    V + D  +   F +    +D 
Sbjct: 56  HPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDA 115

Query: 279 V-RTERGSDVIIMLVGNKTDLSD 300
           +       DV  +++GNK D  +
Sbjct: 116 LFNIAELKDVPFVILGNKIDAPN 138

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 48  GKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 107
           GKT+L+     D      Q T      S+   L    ++   +D  G  + R L   Y  
Sbjct: 35  GKTTLLHMLKNDRLATL-QPTWH--PTSEE--LAIGNIKFTTFDLGGHIQARRLWKDYFP 89

Query: 108 DSTVAVVVYD 117
           +    V + D
Sbjct: 90  EVNGIVFLVD 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.97
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.95
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.95
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.95
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.95
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.95
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.95
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.95
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.95
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.95
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.95
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.95
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.95
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.94
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.94
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.94
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.94
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.94
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.94
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.94
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.94
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.94
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.94
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.94
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.94
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.94
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.94
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.94
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.94
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.94
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.94
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.94
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.94
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.94
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.93
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.93
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.93
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.93
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.93
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.93
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.92
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.92
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.92
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.92
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.92
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.92
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.92
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.91
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.91
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.91
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.91
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.91
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.91
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.9
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.9
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.89
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.89
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.89
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.88
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.87
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.79
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.87
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.87
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.85
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.85
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.85
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.85
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.85
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.85
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.85
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.84
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.84
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.83
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.82
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.82
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.81
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.8
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.8
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.8
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.8
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.78
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.78
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.77
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.77
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.76
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.76
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.76
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.76
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.75
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.74
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.74
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.74
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.74
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.73
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.72
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.72
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.72
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.72
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.72
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.72
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.72
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.72
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.71
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.7
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.7
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.69
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.69
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.69
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.69
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.68
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.68
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.68
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.67
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.66
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.66
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.66
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.64
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.63
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.63
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.63
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.62
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.62
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.62
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.62
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.61
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.61
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.61
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.59
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.59
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.59
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.58
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.58
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.57
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.56
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.56
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.55
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.55
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.31
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.54
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.53
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.52
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.5
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.5
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.5
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.48
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.48
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.46
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.46
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.45
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.45
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.44
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.43
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.43
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.42
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.41
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.41
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.39
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.38
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.36
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.34
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.33
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.31
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.3
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.2
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.2
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.2
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.19
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.19
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.17
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.13
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.12
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.12
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.09
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.04
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.01
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.0
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.99
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.97
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.93
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.91
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.9
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.82
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.78
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.76
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.76
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.74
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.74
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.7
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.68
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.66
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.57
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.54
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.54
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.53
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.52
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.52
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.48
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.48
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.46
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.4
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.36
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.36
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.33
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.26
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.23
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.22
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.2
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.2
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.12
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.12
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.12
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.08
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.07
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.02
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.99
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.97
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.95
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.9
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.84
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.84
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.77
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.75
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.74
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.71
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.66
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.66
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.64
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.63
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.53
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.5
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.48
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.47
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.47
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.41
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.37
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.36
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	97.36
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.34
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.29
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.28
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.26
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.25
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.23
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.23
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.21
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.21
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.21
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.18
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.18
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.18
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.18
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.18
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.17
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.17
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.16
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.16
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.16
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.15
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.15
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.14
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.13
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.13
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.12
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.1
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	97.08
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.08
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.08
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.08
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.07
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	97.07
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.06
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.05
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.05
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.05
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.03
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.01
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.01
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.99
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.99
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.99
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.98
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.98
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.94
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.94
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.94
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.93
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.93
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.91
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.91
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.9
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.89
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.89
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.88
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.88
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.87
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.86
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.86
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.86
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.85
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.84
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.84
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.82
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.8
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.8
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.8
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.79
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.78
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.78
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.75
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	96.75
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.75
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.75
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.73
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.72
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.71
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.7
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.7
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.7
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.7
2xxa_A	433	Signal recognition particle protein; protein trans	96.68
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.67
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.66
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.66
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.66
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.61
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.6
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.6
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.58
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.53
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.52
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.51
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.48
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.48
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.46
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	96.46
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.43
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.31
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.31
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.31
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	96.28
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	96.27
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.25
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.25
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.24
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.24
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.23
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.21
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.2
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.19
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.18
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.16
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	96.08
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.08
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.96
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.92
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.91
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.91
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.9
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.89
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.87
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.86
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.84
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.83
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.83
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.83
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.82
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.82
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.82
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.81
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.78
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.78
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.76
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.75
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.74
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.74
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.72
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.68
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.68
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.67
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.66
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.65
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.64
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.63
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.62
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.61
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.61
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.6
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.6
1g6h_A	257	High-affinity branched-chain amino acid transport	95.58
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.57
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.57
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.56
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.56
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.55
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.54
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.54
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.52
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.52
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.52
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.52
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.51
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.5
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.49
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.46
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.45
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.44
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.42
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.41
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.41
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.41
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.39
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.39
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.38
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.38
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.35
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.35
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.34
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.34
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.33
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.33
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.32
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.32
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.3
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.29
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.28
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.27
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.27
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.26
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.23
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.23
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.21
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.19
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.19
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.18
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	95.16
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.15
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.14
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.13
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	95.12
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.1
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.09
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.06
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.06

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=7.2e-36  Score=255.62  Aligned_cols=179  Identities=93%  Similarity=1.350  Sum_probs=136.9

Q ss_pred             CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725          1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL   80 (355)
Q Consensus         1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~   80 (355)
                      |+.+.++++|.+++||+|||++|||||||++||+.+.|                       ...+.||++.++..+....
T Consensus         1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f-----------------------~~~~~~Tig~d~~~k~~~~   57 (216)
T 4dkx_A            1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSF-----------------------DNTYQATIGIDFLSKTMYL   57 (216)
T ss_dssp             ------------CEEEEEECSTTSSHHHHHHHHHHSCC-----------------------C----------CEEEEEEC
T ss_pred             CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCC-----------------------CCCcCCccceEEEEEEEEe
Confidence            89999999999999999999999999999999999544                       4455677788888888889


Q ss_pred             cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      ++..+.+.+|||+|+++|..+++.+++.+|++++|||++++++|+++..|+..+...                       
T Consensus        58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~-----------------------  114 (216)
T 4dkx_A           58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-----------------------  114 (216)
T ss_dssp             SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------
T ss_pred             cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHh-----------------------
Confidence            999999999999999999999999999999999999999999999888887665321                       


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ  240 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~  240 (355)
                                                                                                      
T Consensus       115 --------------------------------------------------------------------------------  114 (216)
T 4dkx_A          115 --------------------------------------------------------------------------------  114 (216)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725        241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF  320 (355)
Q Consensus       241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  320 (355)
                                                                ...++|++||+||+|+.+.+.+..+++..+++..+++|
T Consensus       115 ------------------------------------------~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~  152 (216)
T 4dkx_A          115 ------------------------------------------RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMF  152 (216)
T ss_dssp             ------------------------------------------HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEE
T ss_pred             ------------------------------------------cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCee
Confidence                                                      11467888888888887778899999999999999999


Q ss_pred             EEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        321 IETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      ++|||++|.||+++|+.|++.++....
T Consensus       153 ~e~SAktg~nV~e~F~~i~~~i~~~~~  179 (216)
T 4dkx_A          153 IETSAKAGYNVKQLFRRVAAALPGMES  179 (216)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999976543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.97  E-value=4.4e-31  Score=249.72  Aligned_cols=255  Identities=18%  Similarity=0.148  Sum_probs=159.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      .+|+++|++|||||||+|+|++......                        .++.+.+..............+.+||||
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v------------------------~~~~g~T~d~~~~~~~~~~~~~~l~DT~   59 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV------------------------EDTPGVTRDRIYSSAEWLNYDFNLIDTG   59 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------CEEEECTTCSSCCEEEC--
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee------------------------cCCCCCccceEEEEEEECCceEEEEECC
Confidence            5899999999999999999998543211                        1222223233333344444579999999


Q ss_pred             Ccc--------cccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         94 GQE--------RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        94 g~~--------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      |++        .+...+..+++.+|++++|+|+.+..++..  .|+..+.+                             
T Consensus        60 G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~-----------------------------  108 (436)
T 2hjg_A           60 GIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY-----------------------------  108 (436)
T ss_dssp             -------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHT-----------------------------
T ss_pred             CCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHH-----------------------------
Confidence            985        566677788899999999999998766643  23322211                             


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeecccc-----------------
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNV-----------------  227 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v-----------------  227 (355)
                                    ..++|+++|+||+|+......    ..++. ..+. .++.+|+.++.++                 
T Consensus       109 --------------~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~  169 (436)
T 2hjg_A          109 --------------RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET  169 (436)
T ss_dssp             --------------TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS
T ss_pred             --------------HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccc
Confidence                          137899999999998542110    00000 0010 2222222222111                 


Q ss_pred             ---------------------------------------------------ceEEEEEEeCCCc----------cccccc
Q psy15725        228 ---------------------------------------------------KQVRLQLWDTAGQ----------ERFRSL  246 (355)
Q Consensus       228 ---------------------------------------------------~~i~~~i~D~~g~----------~~~~~~  246 (355)
                                                                         +...+.+|||+|.          +.|..+
T Consensus       170 ~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~  249 (436)
T 2hjg_A          170 KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL  249 (436)
T ss_dssp             CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred             cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHH
Confidence                                                               1224678899986          334433


Q ss_pred             cc-ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH-----HHHhhcCcEE
Q psy15725        247 IP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE-----RKAKELNVMF  320 (355)
Q Consensus       247 ~~-~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~  320 (355)
                      +. .++..+|++++|+|++++.+.++. .|...+..   .++|+++|+||+|+.+.+.....+..     .+....++++
T Consensus       250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~  325 (436)
T 2hjg_A          250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI  325 (436)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence            33 467889999999999999887775 56666655   58999999999999765544333222     2222345799


Q ss_pred             EEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        321 IETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       321 ~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      +++||++|.||+++|+++.+.+....
T Consensus       326 ~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          326 LFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999998887543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.96  E-value=1.5e-30  Score=247.54  Aligned_cols=261  Identities=18%  Similarity=0.169  Sum_probs=166.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      +...+|+++|++|||||||+|+|++..+...                        .++.+.+..............+.+|
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v------------------------~~~~g~t~~~~~~~~~~~~~~~~li   76 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV------------------------EDTPGVTRDRIYSSAEWLNYDFNLI   76 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------CEEEECTTCSSCCEEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCccc------------------------CCCCCcceeEEEEEEEECCceEEEE
Confidence            3456999999999999999999998543211                        1122333334444445555689999


Q ss_pred             ecCC--------cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccccc
Q psy15725         91 DTAG--------QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA  162 (355)
Q Consensus        91 D~~g--------~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
                      ||||        ++.+...+..+++.+|++++|+|..+..+.  ...|+..+..                          
T Consensus        77 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~--------------------------  128 (456)
T 4dcu_A           77 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA--ADEEVAKILY--------------------------  128 (456)
T ss_dssp             CCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHT--------------------------
T ss_pred             ECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHH--------------------------
Confidence            9999        667777888889999999999998774333  2333333221                          


Q ss_pred             CccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccc----------------
Q psy15725        163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN----------------  226 (355)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~----------------  226 (355)
                                       ..++|+++|+||+|+........   ..+....+ ..+.+|+..+.+                
T Consensus       129 -----------------~~~~pvilV~NK~D~~~~~~~~~---e~~~lg~~-~~~~iSA~~g~gv~~L~~~i~~~l~~~~  187 (456)
T 4dcu_A          129 -----------------RTKKPVVLAVNKLDNTEMRANIY---DFYSLGFG-EPYPISGTHGLGLGDLLDAVAEHFKNIP  187 (456)
T ss_dssp             -----------------TCCSCEEEEEECC---------C---CSGGGSSS-SEEECCTTTCTTHHHHHHHHHTTGGGSC
T ss_pred             -----------------HcCCCEEEEEECccchhhhhhHH---HHHHcCCC-ceEEeecccccchHHHHHHHHhhccccc
Confidence                             13789999999999753211000   00000000 011122211111                


Q ss_pred             ----------------------------------------------------cceEEEEEEeCCC----------ccccc
Q psy15725        227 ----------------------------------------------------VKQVRLQLWDTAG----------QERFR  244 (355)
Q Consensus       227 ----------------------------------------------------v~~i~~~i~D~~g----------~~~~~  244 (355)
                                                                          .+...+.+|||+|          .+.|.
T Consensus       188 ~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~  267 (456)
T 4dcu_A          188 ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYS  267 (456)
T ss_dssp             SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHH
T ss_pred             ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHH
Confidence                                                                1123567999999          56666


Q ss_pred             cccc-ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhc-----Cc
Q psy15725        245 SLIP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-----NV  318 (355)
Q Consensus       245 ~~~~-~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~  318 (355)
                      .++. .++..++++++|+|+++..+.++ ..|...+.+   .++|+++|+||+|+.+.+....++....++..     ++
T Consensus       268 ~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  343 (456)
T 4dcu_A          268 VLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA  343 (456)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCC
Confidence            6555 36789999999999998765333 345555555   58999999999999866666555555554432     47


Q ss_pred             EEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        319 MFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       319 ~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      +++++||++|.||+++|++|.+.+...+..
T Consensus       344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~  373 (456)
T 4dcu_A          344 PILFMSALTKKRIHTLMPAIIKASENHSLR  373 (456)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             CEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999988665443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=6.6e-28  Score=200.76  Aligned_cols=175  Identities=33%  Similarity=0.456  Sum_probs=140.1

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|+++.+.                       ..+.+|.+..+ ...+..++..+.+.+|
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~-~~~~~~~~~~~~~~l~   59 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV-----------------------DSYDPTIENTF-TKLITVNGQEYHLQLV   59 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCC-----------------------SCCCTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCC-----------------------CCCCCCccccE-EEEEEECCEEEEEEEE
Confidence            46799999999999999999999985543                       33445556555 5666778888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||++.|...+..+++.+|++++|||++++.+|+.+..|+.++....                                
T Consensus        60 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------  107 (181)
T 3t5g_A           60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--------------------------------  107 (181)
T ss_dssp             ECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred             eCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--------------------------------
Confidence            999999999999999999999999999999988888877766553210                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (181)
T 3t5g_A          108 --------------------------------------------------------------------------------  107 (181)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+...+.+..+++..+++..+++++++||++|.|
T Consensus       108 --------------------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (181)
T 3t5g_A          108 --------------------------------GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT  155 (181)
T ss_dssp             ------------------------------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHH
T ss_pred             --------------------------------CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCC
Confidence                                            003578888888888877777888888889999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCC
Q psy15725        331 VKQLFRRVAAALPGMDSTENKPP  353 (355)
Q Consensus       331 v~~l~~~l~~~i~~~~~~~~~~~  353 (355)
                      |+++|++|.+.+.+.+.....+|
T Consensus       156 v~~l~~~l~~~~~~~~~~~~~gk  178 (181)
T 3t5g_A          156 AVDVFRRIILEAEKMDGACSQGK  178 (181)
T ss_dssp             HHHHHHHHHHHHHTC-----CCB
T ss_pred             HHHHHHHHHHHHHHhcCCcccCc
Confidence            99999999999998877766654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.1e-28  Score=208.16  Aligned_cols=182  Identities=35%  Similarity=0.613  Sum_probs=130.2

Q ss_pred             CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725          1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL   80 (355)
Q Consensus         1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~   80 (355)
                      ||+..........+||+|+|++|||||||+++|.+..+...                       +.++++.++....+.+
T Consensus         1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~   57 (223)
T 3cpj_B            1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-----------------------SKSTIGVEFATRTLEI   57 (223)
T ss_dssp             ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC-----------------------------CCSEEEEEEEE
T ss_pred             CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------CCCcccceeEEEEEEE
Confidence            77776555667789999999999999999999999554433                       3455666777777778


Q ss_pred             cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      ++..+.+.+|||||++.|..++..+++.+|++|+|||++++.+|+.+..|+..+...                       
T Consensus        58 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~-----------------------  114 (223)
T 3cpj_B           58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN-----------------------  114 (223)
T ss_dssp             TTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred             CCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-----------------------
Confidence            888889999999999999999989999999999999998888888777776665321                       


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ  240 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~  240 (355)
                                                                                                      
T Consensus       115 --------------------------------------------------------------------------------  114 (223)
T 3cpj_B          115 --------------------------------------------------------------------------------  114 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725        241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF  320 (355)
Q Consensus       241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  320 (355)
                                                                ...++|+++|+||+|+...+.+..+++..+++..++++
T Consensus       115 ------------------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  152 (223)
T 3cpj_B          115 ------------------------------------------ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLF  152 (223)
T ss_dssp             ------------------------------------------CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEE
T ss_pred             ------------------------------------------CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEE
Confidence                                                      11345666666666665545566666777777788999


Q ss_pred             EEecCCCCCCHHHHHHHHHHHcCCCCCCCC
Q psy15725        321 IETSAKAGYNVKQLFRRVAAALPGMDSTEN  350 (355)
Q Consensus       321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~  350 (355)
                      +++||++|.||+++|++|.+.+........
T Consensus       153 ~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          153 TETSALNSENVDKAFEELINTIYQKVSKHQ  182 (223)
T ss_dssp             EECCCC-CCCHHHHHHHHHHHHTTCC----
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999999987655443

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.96  E-value=6.9e-28  Score=199.90  Aligned_cols=176  Identities=99%  Similarity=1.390  Sum_probs=132.4

Q ss_pred             CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee
Q psy15725          1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL   80 (355)
Q Consensus         1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~   80 (355)
                      |++. +..++.+.+||+++|++|||||||+++|++..+.                       ..+.++++.++....+.+
T Consensus         3 m~~~-~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~   58 (179)
T 2y8e_A            3 MSSG-DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD-----------------------NTYQATIGIDFLSKTMYL   58 (179)
T ss_dssp             ----------CEEEEEEEEESTTSSHHHHHHHHHHSCCC-----------------------SSCCCCCSEEEEEEEEEE
T ss_pred             cccc-cccCCCcceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------CCCCCceeeEEEEEEEEE
Confidence            4443 5567788999999999999999999999985443                       334556677777777888


Q ss_pred             cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      ++....+.+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+...                       
T Consensus        59 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-----------------------  115 (179)
T 2y8e_A           59 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE-----------------------  115 (179)
T ss_dssp             TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------
T ss_pred             CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-----------------------
Confidence            888889999999999998888888888888888888888887777776666554321                       


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ  240 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~  240 (355)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (179)
T 2y8e_A          116 --------------------------------------------------------------------------------  115 (179)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725        241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF  320 (355)
Q Consensus       241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  320 (355)
                                                                ...++|+++|+||+|+.+.+.+...+...+++..++++
T Consensus       116 ------------------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  153 (179)
T 2y8e_A          116 ------------------------------------------RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF  153 (179)
T ss_dssp             ------------------------------------------HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEE
T ss_pred             ------------------------------------------cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeE
Confidence                                                      11356677777777765555666666667777778999


Q ss_pred             EEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        321 IETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       321 ~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +++||++|.|++++|++|.+.+++.
T Consensus       154 ~~~Sa~~~~~i~~l~~~l~~~~~~~  178 (179)
T 2y8e_A          154 IETSAKAGYNVKQLFRRVAAALPGM  178 (179)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHTCC--
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            9999999999999999999988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=7.8e-28  Score=200.67  Aligned_cols=171  Identities=29%  Similarity=0.483  Sum_probs=137.1

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      ......+.+||+++|++|||||||+++|+++.+..                       .+.++++..+ ......++..+
T Consensus        11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-----------------------~~~~t~~~~~-~~~~~~~~~~~   66 (183)
T 3kkq_A           11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD-----------------------DYDPTIEDSY-LKHTEIDNQWA   66 (183)
T ss_dssp             ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------CCCTTCCEEE-EEEEEETTEEE
T ss_pred             CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------CCCCCcccee-EEEEEeCCcEE
Confidence            33456778999999999999999999999854433                       3445555555 55666778888


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      .+.+|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+...                            
T Consensus        67 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----------------------------  118 (183)
T 3kkq_A           67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV----------------------------  118 (183)
T ss_dssp             EEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----------------------------
T ss_pred             EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh----------------------------
Confidence            8999999999999999999999999999999999988888887776655321                            


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccc
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS  245 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~  245 (355)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (183)
T 3kkq_A          119 --------------------------------------------------------------------------------  118 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecC
Q psy15725        246 LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA  325 (355)
Q Consensus       246 ~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA  325 (355)
                                                          ....++|+++|+||+|+.+.+.+..+++..+++..+++++++||
T Consensus       119 ------------------------------------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  162 (183)
T 3kkq_A          119 ------------------------------------KDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA  162 (183)
T ss_dssp             ------------------------------------HTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBC
T ss_pred             ------------------------------------cCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEecc
Confidence                                                00146788888888888766778888888888888899999999


Q ss_pred             C-CCCCHHHHHHHHHHHcCC
Q psy15725        326 K-AGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       326 ~-~~~gv~~l~~~l~~~i~~  344 (355)
                      + +|.||+++|++|.+.+.+
T Consensus       163 ~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          163 KDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SSSCBSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            9 999999999999998753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.96  E-value=2.3e-27  Score=197.29  Aligned_cols=173  Identities=42%  Similarity=0.752  Sum_probs=133.5

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      +.+.+.+||+++|++|||||||+++|++..+..                       .+.++++.++....+.+++....+
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~   63 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVE-----------------------FQESTIGAAFFSQTLAVNDATVKF   63 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTT-----------------------TSCCCSCCSEEEEEEEETTEEEEE
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------cCCCCceeEEEEEEEEECCEEEEE
Confidence            345678999999999999999999999955433                       334556666777777778888899


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      .+|||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+..                               
T Consensus        64 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-------------------------------  112 (181)
T 2efe_B           64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA-------------------------------  112 (181)
T ss_dssp             EEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-------------------------------
T ss_pred             EEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-------------------------------
Confidence            9999999999988888888888888888888888777777666655432                               


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                                                                                      
T Consensus       113 --------------------------------------------------------------------------------  112 (181)
T 2efe_B          113 --------------------------------------------------------------------------------  112 (181)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                                                        ....++|+++|+||+|+.+.+.+..++...+++..+++++++||++
T Consensus       113 ----------------------------------~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (181)
T 2efe_B          113 ----------------------------------QGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKT  158 (181)
T ss_dssp             ----------------------------------HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSS
T ss_pred             ----------------------------------hcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCC
Confidence                                              1113567777777777766666667777778888889999999999


Q ss_pred             CCCHHHHHHHHHHHcCCCCCC
Q psy15725        328 GYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      |.||+++|++|.+.+.+...+
T Consensus       159 g~gi~~l~~~l~~~~~~~~~~  179 (181)
T 2efe_B          159 ATNVKEIFYEIARRLPRVQPT  179 (181)
T ss_dssp             CTTHHHHHHHHHHTCC-----
T ss_pred             CCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999999876544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=1.9e-27  Score=197.26  Aligned_cols=170  Identities=36%  Similarity=0.637  Sum_probs=133.5

Q ss_pred             CCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEE
Q psy15725          7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR   86 (355)
Q Consensus         7 ~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~   86 (355)
                      .....+.+||+++|++|||||||+++|.+..+                       ...+.++.+.++....+..++....
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~   65 (179)
T 1z0f_A            9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKF-----------------------MADCPHTIGVEFGTRIIEVSGQKIK   65 (179)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHHHSCC-----------------------CSSCTTSCCCCEEEEEEEETTEEEE
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHHcCCC-----------------------CCCCCCccceEEEEEEEEECCeEEE
Confidence            34456789999999999999999999999554                       3334556666777777777888889


Q ss_pred             EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccc
Q psy15725         87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH  166 (355)
Q Consensus        87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (355)
                      +.+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+..                              
T Consensus        66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~------------------------------  115 (179)
T 1z0f_A           66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN------------------------------  115 (179)
T ss_dssp             EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHH------------------------------
T ss_pred             EEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHH------------------------------
Confidence            99999999999888888888888999999988888777777766655432                              


Q ss_pred             cCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccc
Q psy15725        167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSL  246 (355)
Q Consensus       167 ~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~  246 (355)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (179)
T 1z0f_A          116 --------------------------------------------------------------------------------  115 (179)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725        247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK  326 (355)
Q Consensus       247 ~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~  326 (355)
                                                         ....++|+++|+||+|+.+.+.+..++...+++..+++++++||+
T Consensus       116 -----------------------------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (179)
T 1z0f_A          116 -----------------------------------LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK  160 (179)
T ss_dssp             -----------------------------------HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             -----------------------------------hcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence                                               111356777777777776555666667777777788999999999


Q ss_pred             CCCCHHHHHHHHHHHcCC
Q psy15725        327 AGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~  344 (355)
                      +|.||+++|++|.+.+.+
T Consensus       161 ~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          161 TGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TCTTHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999998864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=2e-27  Score=195.28  Aligned_cols=104  Identities=48%  Similarity=0.899  Sum_probs=85.1

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      .+.+.+||+++|++|||||||+++|+++.+..                       .+.++++.++....+.+++....+.
T Consensus         2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~   58 (170)
T 1r2q_A            2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHE-----------------------FQESTIGAAFLTQTVCLDDTTVKFE   58 (170)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------TCCCCSSEEEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CCCCccceEEEEEEEEECCEEEEEE
Confidence            35678999999999999999999999955433                       3445566677777777788889999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus        59 ~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  105 (170)
T 1r2q_A           59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ  105 (170)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             EEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            99999999998888888888999999999888888877777766653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=3.3e-28  Score=202.93  Aligned_cols=169  Identities=43%  Similarity=0.738  Sum_probs=109.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|.++.                       +...+.+|++.++....+.+++....+.+||
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~-----------------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D   63 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDA-----------------------FNSTFISTIGIDFKIRTIELDGKRIKLQIWD   63 (183)
T ss_dssp             EEEEEEEECCCCC---------------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC-----------------------CCCCCCCcccceeEEEEEEECCEEEEEEEEc
Confidence            57999999999999999999999844                       3344567777778777777888889999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||++.+..++..+++.+|++++|||++++.+|+.+..|+..+..                                   
T Consensus        64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----------------------------------  108 (183)
T 2fu5_C           64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE-----------------------------------  108 (183)
T ss_dssp             C---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred             CCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH-----------------------------------
Confidence            999998888888888888888888888887777777666655532                                   


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       109 --------------------------------------------------------------------------------  108 (183)
T 2fu5_C          109 --------------------------------------------------------------------------------  108 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                    ....++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.||
T Consensus       109 ------------------------------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i  158 (183)
T 2fu5_C          109 ------------------------------HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV  158 (183)
T ss_dssp             ------------------------------HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCH
T ss_pred             ------------------------------hcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence                                          11135677777777777655566667777777778899999999999999


Q ss_pred             HHHHHHHHHHcCCCCCC
Q psy15725        332 KQLFRRVAAALPGMDST  348 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~~~  348 (355)
                      +++|++|.+.+.+...+
T Consensus       159 ~~l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          159 ENAFFTLARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999998765443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=2.1e-27  Score=197.00  Aligned_cols=173  Identities=35%  Similarity=0.546  Sum_probs=139.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecC-cEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTVRLQ   88 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~   88 (355)
                      ..+.+||+++|++|||||||+++|.++.+                       ...+.+|++.++....+.+++ ....+.
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~   59 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETF-----------------------GKQYKQTIGLDFFLRRITLPGNLNVTLQ   59 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGT-----------------------THHHHHTTTSSEEEEEEEETTTEEEEEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcC-----------------------CCCCCCceeEEEEEEEEEeCCCCEEEEE
Confidence            45689999999999999999999998443                       334556777777777777776 578999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+....                              
T Consensus        60 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------  109 (178)
T 2hxs_A           60 IWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVS------------------------------  109 (178)
T ss_dssp             EEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH------------------------------
T ss_pred             EEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------
Confidence            99999999999999999999999999999999999988888877664210                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (178)
T 2hxs_A          110 --------------------------------------------------------------------------------  109 (178)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                      .......|+++|+||+|+.+.+.+..++...+++..+++++++||++|
T Consensus       110 --------------------------------~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  157 (178)
T 2hxs_A          110 --------------------------------EESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTG  157 (178)
T ss_dssp             --------------------------------HHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred             --------------------------------cccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence                                            000012337788888887665667777777788888899999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~~  347 (355)
                      .||+++|++|.+.+.+.+.
T Consensus       158 ~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             TTHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHhhhh
Confidence            9999999999999987654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.95  E-value=2.4e-27  Score=199.30  Aligned_cols=171  Identities=38%  Similarity=0.682  Sum_probs=133.7

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ....+.+||+++|++|||||||+++|++..+...                       +.++++.++....+.+++..+.+
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~   72 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------HDLTIGVEFGARMVNIDGKQIKL   72 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------CCSSEEEEEEEETTEEEEE
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------CCCcccceeEEEEEEECCEEEEE
Confidence            3456789999999999999999999999554333                       34555666777777778888999


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      .+|||||++.+..++..+++.+|++++|||++++.+++.+..|+..+...                              
T Consensus        73 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~------------------------------  122 (191)
T 2a5j_A           73 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH------------------------------  122 (191)
T ss_dssp             EEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH------------------------------
T ss_pred             EEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh------------------------------
Confidence            99999999999998888899999999999998888887777776655321                              


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (191)
T 2a5j_A          123 --------------------------------------------------------------------------------  122 (191)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                                                         ...++|+++|+||+|+.+.+.+..++...+++..+++++++||++
T Consensus       123 -----------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  167 (191)
T 2a5j_A          123 -----------------------------------SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKT  167 (191)
T ss_dssp             -----------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             -----------------------------------cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                               113566777777777655556666677777777889999999999


Q ss_pred             CCCHHHHHHHHHHHcCCCC
Q psy15725        328 GYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~~  346 (355)
                      |.||+++|++|.+.+.+..
T Consensus       168 ~~gi~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          168 ACNVEEAFINTAKEIYRKI  186 (191)
T ss_dssp             CTTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999887543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.2e-27  Score=202.83  Aligned_cols=103  Identities=43%  Similarity=0.744  Sum_probs=86.9

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ....+||+++|++|||||||+++|+++.+.                       ..+.+|++.++....+.+++..+.+.+
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~l   79 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFP-----------------------PGQGATIGVDFMIKTVEINGEKVKLQI   79 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCC-----------------------TTCCCCCSEEEEEEEEEETTEEEEEEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCC-----------------------CCCCCccceeEEEEEEEECCEEEEEEE
Confidence            345799999999999999999999995543                       334566677887788888888899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||||++.|..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        80 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~  125 (201)
T 2ew1_A           80 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE  125 (201)
T ss_dssp             EEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999888889999999999999999888888877776654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.95  E-value=6.9e-27  Score=192.18  Aligned_cols=167  Identities=38%  Similarity=0.740  Sum_probs=133.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|.+..+.                       ..+.++.+.++.......++....+.+
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFD-----------------------PNINPTIGASFMTKTVQYQNELHKFLI   59 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------TTCCCCCSEEEEEEEEEETTEEEEEEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCC-----------------------CCCCCceeEEEEEEEEEECCeEEEEEE
Confidence            457799999999999999999999995543                       334556677777777778888889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||++.+...+..+++.+|++++|||++++.+++.+..|+..+..                                 
T Consensus        60 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~---------------------------------  106 (170)
T 1z0j_A           60 WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ---------------------------------  106 (170)
T ss_dssp             EEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH---------------------------------
T ss_pred             EcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHH---------------------------------
Confidence            99999999888888888888888888888888777777767665532                                 


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (170)
T 1z0j_A          107 --------------------------------------------------------------------------------  106 (170)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                      ....+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.
T Consensus       107 --------------------------------~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (170)
T 1z0j_A          107 --------------------------------HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAI  154 (170)
T ss_dssp             --------------------------------HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred             --------------------------------hCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCc
Confidence                                            111456677777777766555666677777777788999999999999


Q ss_pred             CHHHHHHHHHHHcCC
Q psy15725        330 NVKQLFRRVAAALPG  344 (355)
Q Consensus       330 gv~~l~~~l~~~i~~  344 (355)
                      |++++|++|.+.+++
T Consensus       155 ~i~~l~~~i~~~i~~  169 (170)
T 1z0j_A          155 NINELFIEISRRIPS  169 (170)
T ss_dssp             SHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999998864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=3.8e-27  Score=193.66  Aligned_cols=102  Identities=42%  Similarity=0.848  Sum_probs=86.0

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|+++.+.                       ..+.++.+.++....+.+++....+.+||
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   58 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFA-----------------------ENKEPTIGAAFLTQRVTINEHTVKFEIWD   58 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------TTCCCCSSEEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCccceeEEEEEEEECCEEEEEEEEE
Confidence            5799999999999999999999995543                       33455667777777777888888999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      |||++.+...+..+++.+|++++|||++++.+++.+..|+..+..
T Consensus        59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  103 (170)
T 1ek0_A           59 TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE  103 (170)
T ss_dssp             ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHH
Confidence            999999999998899999999999999998888888888777643

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.95  E-value=2.6e-27  Score=194.89  Aligned_cols=167  Identities=39%  Similarity=0.683  Sum_probs=126.2

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||++++++..+..                       .+.++++.++....+.+++..+.+.+
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~i   59 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFND-----------------------KHITTLGASFLTKKLNIGGKRVNLAI   59 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCS-----------------------SCCCCCSCEEEEEEEESSSCEEEEEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCc-----------------------CCCCccceEEEEEEEEECCEEEEEEE
Confidence            3467999999999999999999999855433                       34456666777777777888899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||++.+...+..+++.+|++++|||++++.+++.+..|+..+...                                
T Consensus        60 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------  107 (170)
T 1z08_A           60 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM--------------------------------  107 (170)
T ss_dssp             EECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred             EECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--------------------------------
Confidence            999999998888888888899999999988888887777776655321                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (170)
T 1z08_A          108 --------------------------------------------------------------------------------  107 (170)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                       ...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.
T Consensus       108 ---------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (170)
T 1z08_A          108 ---------------------------------LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNK  154 (170)
T ss_dssp             ---------------------------------HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTB
T ss_pred             ---------------------------------cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCC
Confidence                                             11246677777777765555666667777787888999999999999


Q ss_pred             CHHHHHHHHHHHcCC
Q psy15725        330 NVKQLFRRVAAALPG  344 (355)
Q Consensus       330 gv~~l~~~l~~~i~~  344 (355)
                      ||+++|++|.+.+.+
T Consensus       155 gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          155 GIEELFLDLCKRMIE  169 (170)
T ss_dssp             SHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.95  E-value=2e-27  Score=201.64  Aligned_cols=168  Identities=45%  Similarity=0.713  Sum_probs=129.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|.++.+.                       ..+.+|++.++....+.+++..+.+.+|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~   83 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS-----------------------ERQGSTIGVDFTMKTLEIQGKRVKLQIW   83 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC---------------------------------CEEEEEEEETTEEEEEEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCC-----------------------CCCCCCcceEEEEEEEEECCEEEEEEEE
Confidence            45799999999999999999999985543                       3345666777777777788888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||+++|..++..+++.+|++++|||++++.+|+.+..|+..+...                                 
T Consensus        84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~---------------------------------  130 (201)
T 2hup_A           84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY---------------------------------  130 (201)
T ss_dssp             CCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHH---------------------------------
T ss_pred             ECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---------------------------------
Confidence            99999999888888889999999999998888887777776665321                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (201)
T 2hup_A          131 --------------------------------------------------------------------------------  130 (201)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGY  329 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~  329 (355)
                                                      ...++|+++|+||+|+.+.+.+..+++..+++..++ +++++||++|.
T Consensus       131 --------------------------------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  178 (201)
T 2hup_A          131 --------------------------------AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS  178 (201)
T ss_dssp             --------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred             --------------------------------cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence                                            113566777777777665556666677777777888 99999999999


Q ss_pred             CHHHHHHHHHHHcCCCC
Q psy15725        330 NVKQLFRRVAAALPGMD  346 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~  346 (355)
                      ||+++|++|.+.+.+..
T Consensus       179 gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          179 NVEEAFLRVATELIMRH  195 (201)
T ss_dssp             SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999987543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.95  E-value=5.1e-27  Score=197.84  Aligned_cols=170  Identities=39%  Similarity=0.681  Sum_probs=137.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|++..+                       ...+.++.+.++....+.+++..+.+.+|
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   70 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTY-----------------------TESYISTIGVDFKIRTIELDGKTIKLQIW   70 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCC-----------------------CSCCCCCSSEEEEEEEEEETTEEEEEEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCC-----------------------CCCCCCcccceEEEEEEEECCEEEEEEEE
Confidence            4579999999999999999999998544                       33445666777777888888888999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+...                                 
T Consensus        71 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---------------------------------  117 (196)
T 3tkl_A           71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY---------------------------------  117 (196)
T ss_dssp             EECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---------------------------------
T ss_pred             ECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHh---------------------------------
Confidence            99999999988888888999999999998888887777776655321                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (196)
T 3tkl_A          118 --------------------------------------------------------------------------------  117 (196)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+.+.+.+...+...+++..+++++++||++|.|
T Consensus       118 --------------------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  165 (196)
T 3tkl_A          118 --------------------------------ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN  165 (196)
T ss_dssp             --------------------------------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred             --------------------------------cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence                                            113567777777777776667777777888888889999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCC
Q psy15725        331 VKQLFRRVAAALPGMDST  348 (355)
Q Consensus       331 v~~l~~~l~~~i~~~~~~  348 (355)
                      |+++|++|.+.+.+....
T Consensus       166 v~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          166 VEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            999999999998866443

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=202.69  Aligned_cols=176  Identities=31%  Similarity=0.465  Sum_probs=134.8

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|++..+...                       +.+|.+..+ ......++..+.+.+
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~~~l   76 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG-----------------------YDPTVENTY-SKIVTLGKDEFHLHL   76 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSC-----------------------CCCCSEEEE-EEEEC----CEEEEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC-----------------------CCCccceEE-EEEEEECCEEEEEEE
Confidence            35689999999999999999999999655444                       344445444 555556677789999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+....                               
T Consensus        77 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------  125 (201)
T 3oes_A           77 VDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH-------------------------------  125 (201)
T ss_dssp             EEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC---------------------------------
T ss_pred             EECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-------------------------------
Confidence            9999999999999999999999999999999999998888877663210                               


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (201)
T 3oes_A          126 --------------------------------------------------------------------------------  125 (201)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                       ...++|+++|+||+|+...+.+...++..+++..+++++++||++|.
T Consensus       126 ---------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (201)
T 3oes_A          126 ---------------------------------GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQ  172 (201)
T ss_dssp             ------------------------------------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHH
T ss_pred             ---------------------------------CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCC
Confidence                                             00357888888888887777788888888888889999999999999


Q ss_pred             CHHHHHHHHHHHcCCCCCCCCCCC
Q psy15725        330 NVKQLFRRVAAALPGMDSTENKPP  353 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~~~~~~~~  353 (355)
                      ||+++|++|.+.+.+.+...++++
T Consensus       173 ~v~~l~~~l~~~i~~~~~~~~~~~  196 (201)
T 3oes_A          173 LTQGIFTKVIQEIARVENSYGQER  196 (201)
T ss_dssp             HHHHHHHHHHHHHHHC--------
T ss_pred             CHHHHHHHHHHHHHhhhhhhcccc
Confidence            999999999999987766655543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=200.14  Aligned_cols=172  Identities=27%  Similarity=0.358  Sum_probs=130.4

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      .....+||+++|++|||||||+++|.+.....                       ...++.+.++....+.+++..+.+.
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~l~   75 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDS-----------------------AHEPENPEDTYERRIMVDKEEVTLV   75 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCG-----------------------GGTTTSCTTEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCc-----------------------cCCCCcccceEEEEEEECCEEEEEE
Confidence            34567999999999999999999997633211                       1223344455666677888889999


Q ss_pred             EEecCCcccccc-cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         89 LWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        89 i~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      +|||+|++.+.. ++..+++.+|++++|||++++.+|+.+..|+.++....                             
T Consensus        76 i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-----------------------------  126 (195)
T 3cbq_A           76 VYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR-----------------------------  126 (195)
T ss_dssp             EECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-----------------------------
T ss_pred             EEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-----------------------------
Confidence            999999987765 66777788888888888888888877777766543210                             


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (195)
T 3cbq_A          127 --------------------------------------------------------------------------------  126 (195)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                                                         ...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++
T Consensus       127 -----------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~  171 (195)
T 3cbq_A          127 -----------------------------------PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL  171 (195)
T ss_dssp             -----------------------------------TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             -----------------------------------CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence                                               003678888888888876666777777788888889999999999


Q ss_pred             CCCHHHHHHHHHHHcCCCCC
Q psy15725        328 GYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~~~  347 (355)
                      |.||+++|++|++.+...+.
T Consensus       172 ~~~v~~lf~~l~~~i~~~~~  191 (195)
T 3cbq_A          172 HHNTRELFEGAVRQIRLRRG  191 (195)
T ss_dssp             TBSHHHHHHHHHHHHHTTC-
T ss_pred             CCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999976554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=5.8e-27  Score=197.20  Aligned_cols=168  Identities=39%  Similarity=0.745  Sum_probs=132.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|++..+                       ...+.++++.++....+..++....+.+|
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   77 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHF-----------------------DHNISPTIGASFMTKTVPCGNELHKFLIW   77 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCC-----------------------CTTCCCCSSEEEEEEEEECSSSEEEEEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCC-----------------------CCCcCCCcceeEEEEEEEeCCEEEEEEEE
Confidence            4579999999999999999999999543                       33445666777777777778888999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||++++...+..+++.+|++++|||++++.+|+.+..|+..+...                                 
T Consensus        78 Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~---------------------------------  124 (192)
T 2fg5_A           78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEH---------------------------------  124 (192)
T ss_dssp             EECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHH---------------------------------
T ss_pred             cCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---------------------------------
Confidence            99999999988888889999999999998888888777776665421                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       125 --------------------------------------------------------------------------------  124 (192)
T 2fg5_A          125 --------------------------------------------------------------------------------  124 (192)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|
T Consensus       125 --------------------------------~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g  172 (192)
T 2fg5_A          125 --------------------------------GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN  172 (192)
T ss_dssp             --------------------------------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred             --------------------------------CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence                                            113456666666666654455666667777777889999999999999


Q ss_pred             HHHHHHHHHHHcCCCC
Q psy15725        331 VKQLFRRVAAALPGMD  346 (355)
Q Consensus       331 v~~l~~~l~~~i~~~~  346 (355)
                      |+++|++|.+.+++..
T Consensus       173 i~~l~~~l~~~i~~~~  188 (192)
T 2fg5_A          173 IEELFQGISRQIPPLD  188 (192)
T ss_dssp             HHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999987543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.95  E-value=7.7e-27  Score=195.85  Aligned_cols=166  Identities=42%  Similarity=0.731  Sum_probs=132.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...+||+++|++|||||||+++|++..+..                       .+.++++.++....+..++....+.+|
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~   76 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTP-----------------------AFVSTVGIDFKVKTVYRHDKRIKLQIW   76 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------SCCCCCCCEEEEEEEEETTEEEEEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CcCCceeEEEEEEEEEECCeEEEEEEE
Confidence            356999999999999999999999955433                       344556667766777777888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+...                                 
T Consensus        77 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---------------------------------  123 (189)
T 2gf9_A           77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY---------------------------------  123 (189)
T ss_dssp             ECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---------------------------------
T ss_pred             eCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---------------------------------
Confidence            99999999999888899999999999998888887777776665321                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (189)
T 2gf9_A          124 --------------------------------------------------------------------------------  123 (189)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|
T Consensus       124 --------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  171 (189)
T 2gf9_A          124 --------------------------------SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN  171 (189)
T ss_dssp             --------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             --------------------------------cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence                                            113466777777777655555666667777777788999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q psy15725        331 VKQLFRRVAAALPG  344 (355)
Q Consensus       331 v~~l~~~l~~~i~~  344 (355)
                      |+++|++|.+.+.+
T Consensus       172 i~~l~~~l~~~i~~  185 (189)
T 2gf9_A          172 VKQVFERLVDVICE  185 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=2.5e-27  Score=202.97  Aligned_cols=184  Identities=24%  Similarity=0.439  Sum_probs=138.1

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ...+.+||+++|++|||||||+++|+++.+...                       +.+|++.++ ...+.+++..+.+.
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~l~   78 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPET-----------------------YVPTVFENY-TACLETEEQRVELS   78 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------------------CCCCSEEEE-EEEEEC--CEEEEE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------cCCeeeeeE-EEEEEECCEEEEEE
Confidence            345689999999999999999999999655444                       445555554 44556777888999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhh-HHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      +|||+|++.|..++..+++.+|++|+|||++++.+|+. +..|+..+...                              
T Consensus        79 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~------------------------------  128 (214)
T 3q3j_B           79 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY------------------------------  128 (214)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH------------------------------
T ss_pred             EEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh------------------------------
Confidence            99999999999999999999999999999999999998 68999988753                              


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                  ..++|+++|+||+|+.++..                                                
T Consensus       129 ------------~~~~piilv~nK~Dl~~~~~------------------------------------------------  148 (214)
T 3q3j_B          129 ------------CPSTRVLLIGCKTDLRTDLS------------------------------------------------  148 (214)
T ss_dssp             ------------CTTSEEEEEEECGGGGGCHH------------------------------------------------
T ss_pred             ------------CCCCCEEEEEEChhhccchh------------------------------------------------
Confidence                        13789999999999743100                                                


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAK  326 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~  326 (355)
                                             .    ...+...                 ..+.+..+++..+++..++ ++++|||+
T Consensus       149 -----------------------~----~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          149 -----------------------T----LMELSHQ-----------------KQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             -----------------------H----HHHHHHT-----------------TCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             -----------------------h----hhhhccc-----------------ccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence                                   0    0011110                 1245667788888888898 99999999


Q ss_pred             CCCC-HHHHHHHHHHHcCCCCCCCC
Q psy15725        327 AGYN-VKQLFRRVAAALPGMDSTEN  350 (355)
Q Consensus       327 ~~~g-v~~l~~~l~~~i~~~~~~~~  350 (355)
                      +|.| |+++|++|.+.+........
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~~~~  209 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPSPLP  209 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC------
T ss_pred             CCcccHHHHHHHHHHHHhccCcCCC
Confidence            9998 99999999999987655443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.95  E-value=6.1e-28  Score=228.41  Aligned_cols=252  Identities=21%  Similarity=0.208  Sum_probs=153.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||+|||++......                      ...|++..+.....+.+++  ..+.+|||||
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v----------------------~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G   58 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIV----------------------EDEEGVTRDPVQDTVEWYG--KTFKLVDTCG   58 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC------------------------------------CCSEEEEEETT--EEEEEEECTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcee----------------------cCCCCCccceeeEEEEECC--eEEEEEECCC
Confidence            799999999999999999998542110                      1122333333444444444  4689999999


Q ss_pred             cccc---------cccccccccCccEEEEEEECCCcchhhh--HHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         95 QERF---------RSLIPSYIRDSTVAVVVYDITNANSFHQ--TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        95 ~~~~---------~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      ++..         ...+..+++++|++++|+|+++..+...  +..|+..                              
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~------------------------------  108 (439)
T 1mky_A           59 VFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK------------------------------  108 (439)
T ss_dssp             TTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH------------------------------
T ss_pred             ccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------------------------------
Confidence            7642         3345667899999999999988655533  3334332                              


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhh-hhhhhccCe-EEEEeeeeecccc--------------
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG-ERKAKELNV-MFIETSAKAGYNV--------------  227 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~-~~~~~~~~~-~~~~~sa~~~~~v--------------  227 (355)
                                       .++|+++|+||+|+....   ..+. .++. ..+. .++.+|+.++.++              
T Consensus       109 -----------------~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          109 -----------------STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             -----------------HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             -----------------cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence                             178999999999974320   0111 1111 1122 2333443332211              


Q ss_pred             ----------------------------------------------------------ceEEEEEEeCCCcccccccc--
Q psy15725        228 ----------------------------------------------------------KQVRLQLWDTAGQERFRSLI--  247 (355)
Q Consensus       228 ----------------------------------------------------------~~i~~~i~D~~g~~~~~~~~--  247 (355)
                                                                                +...+.+|||+|........  
T Consensus       168 ~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~  247 (439)
T 1mky_A          168 GLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPR  247 (439)
T ss_dssp             TCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC---------
T ss_pred             cccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchh
Confidence                                                                      11134567888864332211  


Q ss_pred             ----------cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH-----HHH
Q psy15725        248 ----------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG-----ERK  312 (355)
Q Consensus       248 ----------~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-----~~~  312 (355)
                                ..++..++++++++|.++..+.++. .+...+..   .++|+++|+||+|+.+.+.....+.     ..+
T Consensus       248 ~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~  323 (439)
T 1mky_A          248 TVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL  323 (439)
T ss_dssp             --CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHh
Confidence                      1345678999999999987776542 22333333   5899999999999875544333222     222


Q ss_pred             HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        313 AKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       313 ~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      ....+++++++||++|.||+++|+.+.+.+...
T Consensus       324 ~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          324 YFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             GGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            233457999999999999999999999877654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.2e-26  Score=192.82  Aligned_cols=171  Identities=41%  Similarity=0.688  Sum_probs=125.5

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|++..+..                      ..+.++++.++....+..++..+.+.+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~~   64 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLA----------------------GTFISTVGIDFRNKVLDVDGVKVKLQM   64 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC----------------------CCCCCCCSCEEEEEEEEETTEEEEEEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCC----------------------CCcCCceeeEEEEEEEEECCEEEEEEE
Confidence            4567999999999999999999999855421                      234566677777777777888889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||++.+...+..+++.+|++++|||++++.+++.+..|+..+..                                 
T Consensus        65 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~---------------------------------  111 (180)
T 2g6b_A           65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE---------------------------------  111 (180)
T ss_dssp             EECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHH---------------------------------
T ss_pred             EeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHH---------------------------------
Confidence            99999998888888888888888888888887777776666655432                                 


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (180)
T 2g6b_A          112 --------------------------------------------------------------------------------  111 (180)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                      ....++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.
T Consensus       112 --------------------------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (180)
T 2g6b_A          112 --------------------------------YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGL  159 (180)
T ss_dssp             --------------------------------HSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred             --------------------------------hCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence                                            111356677777777766555666667777777778899999999999


Q ss_pred             CHHHHHHHHHHHcCCCCC
Q psy15725        330 NVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~~  347 (355)
                      ||+++|++|.+.+.+.+.
T Consensus       160 gi~~l~~~l~~~~~~~~~  177 (180)
T 2g6b_A          160 NVDLAFTAIAKELKRRSM  177 (180)
T ss_dssp             THHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.95  E-value=4e-27  Score=195.62  Aligned_cols=172  Identities=30%  Similarity=0.482  Sum_probs=134.7

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      .+.+.+||+++|++|||||||+++|++..+..                       .+.+|++..+. ..+..++....+.
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------~~~~t~~~~~~-~~~~~~~~~~~~~   60 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVS-----------------------DYDPTIEDSYT-KICSVDGIPARLD   60 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCS-----------------------SCCTTCCEEEE-EEEEETTEEEEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCcc-----------------------ccCCCcCceEE-EEEEECCEEEEEE
Confidence            34567999999999999999999999954433                       34455555544 5566777778999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||||++++..++..+++.+|++++|||++++.+++.+..|+..+...                               
T Consensus        61 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-------------------------------  109 (181)
T 2fn4_A           61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRV-------------------------------  109 (181)
T ss_dssp             EEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred             EEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-------------------------------
Confidence            9999999999999988899999999999999988888777776665321                               


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (181)
T 2fn4_A          110 --------------------------------------------------------------------------------  109 (181)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                       ....++|+++|+||+|+.+.+.+...++..++...+++++++||++|
T Consensus       110 ---------------------------------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  156 (181)
T 2fn4_A          110 ---------------------------------KDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLR  156 (181)
T ss_dssp             ---------------------------------HTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred             ---------------------------------cCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCC
Confidence                                             00135677777777777655566667777777778899999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~~~  348 (355)
                      .||+++|++|.+.+.+.+++
T Consensus       157 ~gv~~l~~~l~~~~~~~~~~  176 (181)
T 2fn4_A          157 LNVDEAFEQLVRAVRKYQEQ  176 (181)
T ss_dssp             BSHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhhcc
Confidence            99999999999999765543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=196.48  Aligned_cols=169  Identities=37%  Similarity=0.676  Sum_probs=135.2

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|.+..+                       ...+.++.+.++....+.+++....+.+
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i   62 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTF-----------------------SGSYITTIGVDFKIRTVEINGEKVKLQI   62 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC--------------------------CCTTTBSEEEEEEEEEETTEEEEEEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCC-----------------------CCccCCCceeEEEEEEEEECCEEEEEEE
Confidence            34679999999999999999999998443                       3344566677777788888888899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||++.+...+..+++.+|++++|||++++.+++.+..|+..+...                                
T Consensus        63 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------  110 (181)
T 3tw8_B           63 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--------------------------------  110 (181)
T ss_dssp             EEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred             EcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh--------------------------------
Confidence            999999999999999999999999999999988888777776655321                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (181)
T 3tw8_B          111 --------------------------------------------------------------------------------  110 (181)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                       . .++|+++|+||+|+.+.+.+...+...++...+++++++||++|.
T Consensus       111 ---------------------------------~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (181)
T 3tw8_B          111 ---------------------------------C-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENV  156 (181)
T ss_dssp             ---------------------------------C-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred             ---------------------------------C-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence                                             1 245666666777765555666677777777788999999999999


Q ss_pred             CHHHHHHHHHHHcCCCCC
Q psy15725        330 NVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~~  347 (355)
                      ||+++|++|.+.+...++
T Consensus       157 gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          157 NVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            999999999999876543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.95  E-value=4.5e-27  Score=196.48  Aligned_cols=102  Identities=39%  Similarity=0.743  Sum_probs=83.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|++..+..                       .+.++++.++....+..++..+.+.+|
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~   64 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD-----------------------DSNHTIGVEFGSKIINVGGKYVKLQIW   64 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-----------------------TCCCCSEEEEEEEEEEETTEEEEEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CCCCccceEEEEEEEEECCEEEEEEEE
Confidence            457999999999999999999999955433                       344556667777777788888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        65 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  109 (186)
T 2bme_A           65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR  109 (186)
T ss_dssp             EECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             eCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            999999988888888888999999999888888877777766553

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.95  E-value=9.2e-27  Score=196.20  Aligned_cols=103  Identities=32%  Similarity=0.587  Sum_probs=83.1

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ...+.+||+++|++|||||||+++|.++.+...                       +.+|++..+. .....++..+.+.
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~-----------------------~~~t~~~~~~-~~~~~~~~~~~~~   74 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTA-----------------------YVPTVFENFS-HVMKYKNEEFILH   74 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------------------CCCCSEEEEE-EEEEETTEEEEEE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCc-----------------------cCCeeeeeeE-EEEEECCEEEEEE
Confidence            345679999999999999999999999655444                       3445454443 3556778888999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHh
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVR  135 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~  135 (355)
                      +|||||++.|...+..+++.+|++++|||++++.+|+.+ ..|+..+.
T Consensus        75 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  122 (194)
T 3reg_A           75 LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK  122 (194)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHH
T ss_pred             EEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999886 66766654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=3.4e-27  Score=201.19  Aligned_cols=171  Identities=30%  Similarity=0.407  Sum_probs=127.4

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|.+...                     .+... .++++.++....+.+++..+.+.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~---------------------~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~   91 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHD---------------------SMDSD-CEVLGEDTYERTLMVDGESATIIL   91 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCC---------------------TTCCC----CCTTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCC---------------------CCCCc-CCccceeeEEEEEEECCeeeEEEE
Confidence            34579999999999999999999986331                     11221 233555666677778888889999


Q ss_pred             EecCCccc-ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         90 WDTAGQER-FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        90 ~D~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |||+|+.. +..+...+++.+|++++|||++++.+|+.+..|...+....                              
T Consensus        92 ~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~------------------------------  141 (211)
T 2g3y_A           92 LDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR------------------------------  141 (211)
T ss_dssp             ECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG------------------------------
T ss_pred             eecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------
Confidence            99999876 45566667778888888888888888887777765543110                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (211)
T 2g3y_A          142 --------------------------------------------------------------------------------  141 (211)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                        ...++|+++|+||+|+...+.+..+++..++...++++++|||++|
T Consensus       142 ----------------------------------~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g  187 (211)
T 2g3y_A          142 ----------------------------------QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ  187 (211)
T ss_dssp             ----------------------------------GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             ----------------------------------CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCC
Confidence                                              0035778888888887655667777777777778899999999999


Q ss_pred             CCHHHHHHHHHHHcCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~  346 (355)
                      .||+++|++|++.+...+
T Consensus       188 ~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          188 HNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             BSHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999986443

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.95  E-value=5.2e-27  Score=196.18  Aligned_cols=98  Identities=17%  Similarity=0.316  Sum_probs=78.3

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ..+.+.+||+++|++|||||||+++|+++.+...                       +.+|.+ .+ ...+.+++..+.+
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-----------------------~~~t~~-~~-~~~~~~~~~~~~l   69 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-----------------------ESPEGG-RF-KKEIVVDGQSYLL   69 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-----------------------CCTTCE-EE-EEEEEETTEEEEE
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------cCCCcc-eE-EEEEEECCEEEEE
Confidence            3467889999999999999999999999655443                       333422 23 3667778888999


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      .+|||+|++.+.     +++.+|++++|||++++.+|+.+..|+..+.
T Consensus        70 ~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~  112 (184)
T 3ihw_A           70 LIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC  112 (184)
T ss_dssp             EEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             EEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            999999998876     6778999999999999988888888887764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.7e-26  Score=194.36  Aligned_cols=170  Identities=39%  Similarity=0.688  Sum_probs=138.0

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ...+.+||+++|++|||||||+++|++..+.                       ..+.++++.++....+.+++....+.
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~   67 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFD-----------------------PELAATIGVDFKVKTISVDGNKAKLA   67 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------TTCCCCCSEEEEEEEEEETTEEEEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------ccCCCccceEEEEEEEEECCeEEEEE
Confidence            3467899999999999999999999995543                       33455667777777777888889999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||||++.+..++..+++.+|++++|||++++.+++.+..|+.++....                              
T Consensus        68 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------  117 (195)
T 1x3s_A           68 IWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC------------------------------  117 (195)
T ss_dssp             EEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCC------------------------------
T ss_pred             EEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------------------------
Confidence            99999999999999999999999999999999989988888877763210                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                .                                                                     
T Consensus       118 ----------~---------------------------------------------------------------------  118 (195)
T 1x3s_A          118 ----------T---------------------------------------------------------------------  118 (195)
T ss_dssp             ----------S---------------------------------------------------------------------
T ss_pred             ----------C---------------------------------------------------------------------
Confidence                      0                                                                     


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                         ..++|+++|+||+|+. .+.+..+++..+++..+++++++||++|
T Consensus       119 -----------------------------------~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  162 (195)
T 1x3s_A          119 -----------------------------------RNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTC  162 (195)
T ss_dssp             -----------------------------------CSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             -----------------------------------cCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCC
Confidence                                               0356777777777773 3445566677777778899999999999


Q ss_pred             CCHHHHHHHHHHHcCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~  346 (355)
                      .||+++|++|.+.+....
T Consensus       163 ~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          163 DGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             TTHHHHHHHHHHHHHTSG
T ss_pred             CCHHHHHHHHHHHHHhhh
Confidence            999999999999988654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.95  E-value=1.1e-26  Score=190.34  Aligned_cols=164  Identities=32%  Similarity=0.559  Sum_probs=128.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|.++.+...+                       .+|.+..+ ...+.+++....+.+||
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~l~D   57 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKY-----------------------DPTIEDSY-RKQVEVDCQQCMLEILD   57 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSC-----------------------CCCSEEEE-EEEEESSSCEEEEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------------------CCCccceE-EEEEEECCEEEEEEEEE
Confidence            5689999999999999999999996554443                       34444333 34455677788999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||++.+...+..+++.+|++++|||++++.+|+.+..|+..+....                                 
T Consensus        58 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---------------------------------  104 (167)
T 1c1y_A           58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK---------------------------------  104 (167)
T ss_dssp             ECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---------------------------------
T ss_pred             CCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---------------------------------
Confidence            99999999999888999999999999999888887777766553210                                 


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (167)
T 1c1y_A          105 --------------------------------------------------------------------------------  104 (167)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhc-CcEEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~SA~~~~g  330 (355)
                                                     ...++|+++|+||+|+.+.+.+..++...+++.. +++++++||++|.|
T Consensus       105 -------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  153 (167)
T 1c1y_A          105 -------------------------------DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN  153 (167)
T ss_dssp             -------------------------------CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBS
T ss_pred             -------------------------------CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCC
Confidence                                           0135677777777777655666666777777766 68999999999999


Q ss_pred             HHHHHHHHHHHcC
Q psy15725        331 VKQLFRRVAAALP  343 (355)
Q Consensus       331 v~~l~~~l~~~i~  343 (355)
                      ++++|++|.+.+.
T Consensus       154 i~~l~~~l~~~i~  166 (167)
T 1c1y_A          154 VNEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=4.8e-27  Score=197.45  Aligned_cols=175  Identities=33%  Similarity=0.563  Sum_probs=132.6

Q ss_pred             CCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeee-eeeeeecCc
Q psy15725          5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL-SKTMYLEDR   83 (355)
Q Consensus         5 ~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~   83 (355)
                      |+.....+.+||+++|++|||||||+++|.++.+...                       +.+|++.++. ...+..++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~   59 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSK-----------------------FITTVGIDFREKRVVYRANG   59 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------------------CCCCCSEEEEEEEEEECTTS
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcC-----------------------cccccceeeeeEEEEEecCC
Confidence            3444556789999999999999999999999654433                       3445555555 444445544


Q ss_pred             ---------EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccc
Q psy15725         84 ---------TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNF  154 (355)
Q Consensus        84 ---------~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
                               ...+.+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+.....               
T Consensus        60 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---------------  124 (195)
T 3bc1_A           60 PDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY---------------  124 (195)
T ss_dssp             CCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS---------------
T ss_pred             cccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---------------
Confidence                     68999999999999998888889999999999999998888887777766643200               


Q ss_pred             ccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEE
Q psy15725        155 THLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL  234 (355)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i  234 (355)
                                               .                                                      
T Consensus       125 -------------------------~------------------------------------------------------  125 (195)
T 3bc1_A          125 -------------------------S------------------------------------------------------  125 (195)
T ss_dssp             -------------------------S------------------------------------------------------
T ss_pred             -------------------------C------------------------------------------------------
Confidence                                     0                                                      


Q ss_pred             EeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh
Q psy15725        235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK  314 (355)
Q Consensus       235 ~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~  314 (355)
                                                                        .++|+++|+||+|+.+.+.+..++...+++
T Consensus       126 --------------------------------------------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  155 (195)
T 3bc1_A          126 --------------------------------------------------ENPDIVLCGNKSDLEDQRAVKEEEARELAE  155 (195)
T ss_dssp             --------------------------------------------------SSCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             --------------------------------------------------CCCCEEEEEECcccccccccCHHHHHHHHH
Confidence                                                              246667777777765555566666677777


Q ss_pred             hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        315 ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       315 ~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      ..+++++++||++|.||+++|++|.+.+.+..
T Consensus       156 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  187 (195)
T 3bc1_A          156 KYGIPYFETSAANGTNISHAIEMLLDLIMKRM  187 (195)
T ss_dssp             HHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            77889999999999999999999999987654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.95  E-value=7.5e-27  Score=196.53  Aligned_cols=103  Identities=35%  Similarity=0.728  Sum_probs=85.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+|+|++|||||||+++|++..+..                       .+.++++.++....+.+++....+.+
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~i   78 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSH-----------------------DSRTTIGVEFSTRTVMLGTAAVKAQI   78 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCS-----------------------SCCCCSSEEEEEEEEEETTEEEEEEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------CCCCccceeEEEEEEEECCEEEEEEE
Confidence            3457999999999999999999999955433                       34456677777777777888899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        79 ~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~  124 (193)
T 2oil_A           79 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY  124 (193)
T ss_dssp             EEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            9999999998888888899999999999988888877777766653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.7e-27  Score=200.31  Aligned_cols=169  Identities=40%  Similarity=0.681  Sum_probs=136.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ....+||+++|++|||||||+++|++..+...+                       .++.+.++....+..++..+.+.+
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~~~~~~~~~~~~~~~~i   76 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF-----------------------VSTVGIDFKVKTVYRHEKRVKLQI   76 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCE-----------------------EEEETTTEEEEEEEETTTTEEEEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCccc-----------------------CCCeeeEEEEEEEEECCEEEEEEE
Confidence            346799999999999999999999996654443                       445566677777777788889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+...                                
T Consensus        77 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--------------------------------  124 (191)
T 3dz8_A           77 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY--------------------------------  124 (191)
T ss_dssp             ECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH--------------------------------
T ss_pred             EeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh--------------------------------
Confidence            999999999988888899999999999999888888777776665321                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       125 --------------------------------------------------------------------------------  124 (191)
T 3dz8_A          125 --------------------------------------------------------------------------------  124 (191)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                       ...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.
T Consensus       125 ---------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  171 (191)
T 3dz8_A          125 ---------------------------------SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENI  171 (191)
T ss_dssp             ---------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             ---------------------------------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence                                             11356777777777776566677777778888888999999999999


Q ss_pred             CHHHHHHHHHHHcCCCC
Q psy15725        330 NVKQLFRRVAAALPGMD  346 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~  346 (355)
                      ||+++|++|.+.+....
T Consensus       172 gi~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          172 SVRQAFERLVDAICDKM  188 (191)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999886543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=7.8e-27  Score=191.88  Aligned_cols=167  Identities=28%  Similarity=0.381  Sum_probs=121.3

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||+++|.+..+...                       ..++.+.++....+.+++..+.+.+|||
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~   58 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA-----------------------HEMENSEDTYERRIMVDKEEVTLIVYDI   58 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC-----------------------------------CEEEEEEEETTEEEEEEEECC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCccc-----------------------ccCCCcCCeeeEEEEECCeEEEEEEEEC
Confidence            47999999999999999999987443222                       2223334566666778888899999999


Q ss_pred             CCcccccc-cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      ||++.+.. ++..+++.+|++++|||++++++|+.+..|+.++....                                 
T Consensus        59 ~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------------------------------  105 (169)
T 3q85_A           59 WEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR---------------------------------  105 (169)
T ss_dssp             CCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---------------------------------
T ss_pred             CCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcc---------------------------------
Confidence            99988876 66667788888888888888888877777765553210                                 


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (169)
T 3q85_A          106 --------------------------------------------------------------------------------  105 (169)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     ...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.||
T Consensus       106 -------------------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (169)
T 3q85_A          106 -------------------------------PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT  154 (169)
T ss_dssp             -------------------------------TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred             -------------------------------cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCH
Confidence                                           0035778888888887766777888888888888999999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q psy15725        332 KQLFRRVAAALPGMD  346 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~  346 (355)
                      +++|++|.+.+..+|
T Consensus       155 ~~l~~~l~~~i~~~r  169 (169)
T 3q85_A          155 RELFEGAVRQIRLRR  169 (169)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999886543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.95  E-value=5.6e-27  Score=193.78  Aligned_cols=168  Identities=32%  Similarity=0.423  Sum_probs=122.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|.+..+...                        .++.+.++....+.+++..+.+.+||
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~D   58 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL------------------------HEQLGEDVYERTLTVDGEDTTLVVVD   58 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----------------------------CCCSSSSEEEEEEEETTEEEEEEEEC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccc------------------------cCccccceeEEEEEECCEEEEEEEEe
Confidence            568999999999999999999998554322                        12344555666677788888999999


Q ss_pred             cCCccc--ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         92 TAGQER--FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        92 ~~g~~~--~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||++.  +..+...+++.+|++++|||++++.+|+.+..|+..+....                               
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------------------  107 (175)
T 2nzj_A           59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH-------------------------------  107 (175)
T ss_dssp             CC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred             cCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-------------------------------
Confidence            999877  55566677778888888888888888877777765543210                               


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (175)
T 2nzj_A          108 --------------------------------------------------------------------------------  107 (175)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                       ...++|+++|+||+|+.+.+.+..++...++...+++++++||++|.
T Consensus       108 ---------------------------------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~  154 (175)
T 2nzj_A          108 ---------------------------------QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQH  154 (175)
T ss_dssp             -------------------------------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTB
T ss_pred             ---------------------------------ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence                                             00357888888888887666677777777777788999999999999


Q ss_pred             CHHHHHHHHHHHcCCCCC
Q psy15725        330 NVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~~  347 (355)
                      ||+++|++|.+.+...++
T Consensus       155 gi~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          155 NVAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             SHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhhc
Confidence            999999999999865443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.95  E-value=8.9e-27  Score=191.15  Aligned_cols=101  Identities=40%  Similarity=0.755  Sum_probs=84.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||+++|.++.+.                       ..+.+|++.++....+.+++....+.+||
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~D   60 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT-----------------------KDYKKTIGVDFLERQIQVNDEDVRLMLWD   60 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCC-----------------------CCSSCCCSSSEEEEEEEETTEEEEEEEEC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCC-----------------------CCCCCceEEEEEEEEEEECCEEEEEEEEc
Confidence            5799999999999999999999985443                       33455666677777777788888999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus        61 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~  104 (168)
T 1z2a_A           61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV  104 (168)
T ss_dssp             CTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             CCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            99999999998888999999999999998888877777766553

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=3.3e-26  Score=194.64  Aligned_cols=167  Identities=41%  Similarity=0.673  Sum_probs=133.6

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...+||+++|++|||||||+++|.+..+.                       ..+.++++.++....+.+++..+.+.+|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~   62 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT-----------------------NDYISTIGVDFKIKTVELDGKTVKLQIW   62 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCC-----------------------TTCCCSSCCCEEEEEEEETTEEEEEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCcccceeEEEEEEECCEEEEEEEE
Confidence            45799999999999999999999995543                       3345566777777777788888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+...                                 
T Consensus        63 Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~---------------------------------  109 (206)
T 2bcg_Y           63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRY---------------------------------  109 (206)
T ss_dssp             CCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred             eCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---------------------------------
Confidence            99999999988888888999999999998888887777776655321                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (206)
T 2bcg_Y          110 --------------------------------------------------------------------------------  109 (206)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|
T Consensus       110 --------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  157 (206)
T 2bcg_Y          110 --------------------------------ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN  157 (206)
T ss_dssp             --------------------------------SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTT
T ss_pred             --------------------------------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence                                            113566777777777665556666677777777889999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q psy15725        331 VKQLFRRVAAALPGM  345 (355)
Q Consensus       331 v~~l~~~l~~~i~~~  345 (355)
                      |+++|++|.+.+...
T Consensus       158 i~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          158 VEDAFLTMARQIKES  172 (206)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988644

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=1.4e-26  Score=190.37  Aligned_cols=101  Identities=41%  Similarity=0.823  Sum_probs=79.3

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||+++|++..+...                       +.++++.++....+.+++..+.+.+||
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D   58 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS-----------------------FITTIGIDFKIKTVDINGKKVKLQIWD   58 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC------------------------------CCEEEEEEESSSCEEEEEEEC
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCC-----------------------CCCccceeEEEEEEEECCEEEEEEEEe
Confidence            358999999999999999999999554333                       345556666667777778888999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus        59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~  102 (170)
T 1g16_A           59 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVN  102 (170)
T ss_dssp             CTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             CCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            99999999888888999999999999988888877777766653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=8.4e-27  Score=191.11  Aligned_cols=165  Identities=30%  Similarity=0.412  Sum_probs=115.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|.+......                        .++.+..+ .....+++....+.+||
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~------------------------~~~~~~~~-~~~~~~~~~~~~~~i~D   55 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE------------------------AEAAGHTY-DRSIVVDGEEASLMVYD   55 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC----------------------------------CEE-EEEEEETTEEEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccccCC------------------------CCccccce-EEEEEECCEEEEEEEEE
Confidence            358999999999999999999987443211                        22333333 34556778889999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |+|++.+..++..+++.+|++++|||++++.+|+.+..|+..+....                                 
T Consensus        56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------------------------------  102 (166)
T 3q72_A           56 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR---------------------------------  102 (166)
T ss_dssp             CC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---------------------------------
T ss_pred             CCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---------------------------------
Confidence            99999999999999999999999999999999988888877664210                                 


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       103 --------------------------------------------------------------------------------  102 (166)
T 3q72_A          103 --------------------------------------------------------------------------------  102 (166)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     ...++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.||
T Consensus       103 -------------------------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  151 (166)
T 3q72_A          103 -------------------------------QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV  151 (166)
T ss_dssp             ----------------------------------CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSH
T ss_pred             -------------------------------CCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCH
Confidence                                           0035688888888888777778888888888888999999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q psy15725        332 KQLFRRVAAALPGM  345 (355)
Q Consensus       332 ~~l~~~l~~~i~~~  345 (355)
                      +++|++|.+.+..+
T Consensus       152 ~~l~~~l~~~~~~~  165 (166)
T 3q72_A          152 QALFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=4.7e-27  Score=199.13  Aligned_cols=169  Identities=38%  Similarity=0.655  Sum_probs=127.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+|+|++|||||||+++|+++.+..                       .+.++++.++....+.+++....+.+|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~l~   79 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-----------------------DSNHTIGVEFGSRVVNVGGKTVKLQIW   79 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC-----------------------------------CCEEEEEEEETTEEEEEEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------cCCCcccceeEEEEEEECCeeeEEEEE
Confidence            457999999999999999999999855433                       334556667777777778888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+...                                 
T Consensus        80 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---------------------------------  126 (200)
T 2o52_A           80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTL---------------------------------  126 (200)
T ss_dssp             CCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH---------------------------------
T ss_pred             cCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---------------------------------
Confidence            99999999888888899999999999999888888777776665321                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (200)
T 2o52_A          127 --------------------------------------------------------------------------------  126 (200)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+.+.+.+...++..+++..+++++++||++|.|
T Consensus       127 --------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  174 (200)
T 2o52_A          127 --------------------------------ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN  174 (200)
T ss_dssp             --------------------------------TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             --------------------------------cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence                                            112456666666666655555666666777777889999999999999


Q ss_pred             HHHHHHHHHHHcCCCCC
Q psy15725        331 VKQLFRRVAAALPGMDS  347 (355)
Q Consensus       331 v~~l~~~l~~~i~~~~~  347 (355)
                      |+++|++|.+.+.+...
T Consensus       175 i~~l~~~l~~~i~~~~~  191 (200)
T 2o52_A          175 VEEAFLKCARTILNKID  191 (200)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999998876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.6e-26  Score=193.37  Aligned_cols=181  Identities=25%  Similarity=0.466  Sum_probs=138.1

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      ....+.+.+||+++|++|||||||+++|.++.+...+                       .+|++..+ ...+.+++..+
T Consensus        11 ~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~   66 (194)
T 2atx_A           11 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEY-----------------------VPTVFDHY-AVSVTVGGKQY   66 (194)
T ss_dssp             SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSC-----------------------CCSSCCCE-EEEEESSSCEE
T ss_pred             CCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------------CCccccee-EEEEEECCEEE
Confidence            3344567899999999999999999999996554443                       33444333 33455667778


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS  164 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
                      .+.+|||||+++|..++..+++.+|++++|||++++.+|+.+. .|+..+...                           
T Consensus        67 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------------------------  119 (194)
T 2atx_A           67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---------------------------  119 (194)
T ss_dssp             EEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH---------------------------
T ss_pred             EEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---------------------------
Confidence            9999999999999999999999999999999999999999987 798888643                           


Q ss_pred             cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccc
Q psy15725        165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR  244 (355)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~  244 (355)
                                     ..++|+++|+||+|+.+...                                             
T Consensus       120 ---------------~~~~piilv~nK~Dl~~~~~---------------------------------------------  139 (194)
T 2atx_A          120 ---------------APNVPFLLIGTQIDLRDDPK---------------------------------------------  139 (194)
T ss_dssp             ---------------STTCCEEEEEECTTSTTCHH---------------------------------------------
T ss_pred             ---------------CCCCCEEEEEEChhhccccc---------------------------------------------
Confidence                           13789999999999743110                                             


Q ss_pred             ccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEe
Q psy15725        245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIET  323 (355)
Q Consensus       245 ~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~  323 (355)
                                                    ..+.+..                 ...+.+..+++..+++..++ +++++
T Consensus       140 ------------------------------~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A          140 ------------------------------TLARLND-----------------MKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             ------------------------------HHHHHTT-----------------TTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             ------------------------------chhhccc-----------------ccCcccCHHHHHHHHHHcCCcEEEEe
Confidence                                          0000000                 01234556677778877776 99999


Q ss_pred             cCCCCCCHHHHHHHHHHHcCC
Q psy15725        324 SAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       324 SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      ||++|.||+++|++|.+.+..
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=1.2e-26  Score=194.66  Aligned_cols=168  Identities=39%  Similarity=0.653  Sum_probs=130.4

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|+++.+..                       .+.++++.++....+.+++....+.+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~l   73 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-----------------------RTEATIGVDFRERAVDIDGERIKIQL   73 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------------------SCCCCCSCCEEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------CCCCCcceEEEEEEEEECCEEEEEEE
Confidence            3467999999999999999999999955433                       34556666777777778888889999


Q ss_pred             EecCCccccc-ccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         90 WDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        90 ~D~~g~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |||||++.+. .++..+++.+|++++|||++++.+|+.+..|+.++....                              
T Consensus        74 ~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~------------------------------  123 (189)
T 1z06_A           74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL------------------------------  123 (189)
T ss_dssp             EECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC------------------------------
T ss_pred             EECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc------------------------------
Confidence            9999999888 788888889999999999998888887777766654220                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (189)
T 1z06_A          124 --------------------------------------------------------------------------------  123 (189)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                        ...++|+++|+||+|+.+.+.+..++...+++..+++++++||++|
T Consensus       124 ----------------------------------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  169 (189)
T 1z06_A          124 ----------------------------------LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP  169 (189)
T ss_dssp             ----------------------------------CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred             ----------------------------------CCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence                                              0135677777777777665666677777788888899999999999


Q ss_pred             ---CCHHHHHHHHHHHcCC
Q psy15725        329 ---YNVKQLFRRVAAALPG  344 (355)
Q Consensus       329 ---~gv~~l~~~l~~~i~~  344 (355)
                         .||+++|++|.+.+++
T Consensus       170 ~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          170 NDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             GGGSCHHHHHHHHC-----
T ss_pred             CcccCHHHHHHHHHHHHhh
Confidence               9999999999988754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=194.16  Aligned_cols=169  Identities=24%  Similarity=0.402  Sum_probs=129.5

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ++.+.+||+++|++|||||||+++|+++.+..                       .+.+|++..+ .....+++..+.+.
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~-----------------------~~~~t~~~~~-~~~~~~~~~~~~l~   72 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFIS-----------------------EYDPNLEDTY-SSEETVDHQPVHLR   72 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------------------CCCTTCCEEE-EEEEEETTEEEEEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCc-----------------------ccCCCcccee-eEEEEECCEEEEEE
Confidence            45678999999999999999999999955443                       3445555444 34456778889999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||+|++.+..+ ..+++.+|++++|||++++++|+.+..|+..+....                              
T Consensus        73 i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~------------------------------  121 (187)
T 3c5c_A           73 VMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA------------------------------  121 (187)
T ss_dssp             EEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred             EEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------
Confidence            9999999888775 568888999999999999888888888877664210                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (187)
T 3c5c_A          122 --------------------------------------------------------------------------------  121 (187)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecC-CC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA-KA  327 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA-~~  327 (355)
                                                      .....++|+++|+||+|+.+.+.+..+++..+++..+++++++|| ++
T Consensus       122 --------------------------------~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  169 (187)
T 3c5c_A          122 --------------------------------KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD  169 (187)
T ss_dssp             --------------------------------HHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSC
T ss_pred             --------------------------------hccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCc
Confidence                                            000146788888888888766777778888888888999999999 89


Q ss_pred             CCCHHHHHHHHHHHcCC
Q psy15725        328 GYNVKQLFRRVAAALPG  344 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~  344 (355)
                      |.||+++|++|.+.+.+
T Consensus       170 g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          170 FEHVQHVFHEAVREARR  186 (187)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHHHhh
Confidence            99999999999998753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=2.9e-26  Score=194.48  Aligned_cols=165  Identities=41%  Similarity=0.723  Sum_probs=131.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||+++|++..+..                       .+.++++.++....+..++....+.+||
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~l~D   63 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTP-----------------------AFVSTVGIDFKVKTIYRNDKRIKLQIWD   63 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCS-----------------------CCCCCCSEEEEEEEEEETTEEEEEEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------CcCCccceeEEEEEEEECCeEEEEEEEE
Confidence            56999999999999999999999955433                       3445667777777777788889999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||++.+...+..+++.+|++++|||++++.+|+.+..|+..+..                                   
T Consensus        64 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~-----------------------------------  108 (203)
T 1zbd_A           64 TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT-----------------------------------  108 (203)
T ss_dssp             ECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred             CCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH-----------------------------------
Confidence            999998888888888888888888888887777776666655432                                   


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       109 --------------------------------------------------------------------------------  108 (203)
T 1zbd_A          109 --------------------------------------------------------------------------------  108 (203)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                    ....++|+++|+||+|+.+.+.+..++...+++..+++++++||++|.||
T Consensus       109 ------------------------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  158 (203)
T 1zbd_A          109 ------------------------------YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINV  158 (203)
T ss_dssp             ------------------------------HSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred             ------------------------------hcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence                                          11135677777777777665666677777788888899999999999999


Q ss_pred             HHHHHHHHHHcCC
Q psy15725        332 KQLFRRVAAALPG  344 (355)
Q Consensus       332 ~~l~~~l~~~i~~  344 (355)
                      +++|++|.+.+.+
T Consensus       159 ~~l~~~l~~~i~~  171 (203)
T 1zbd_A          159 KQTFERLVDVICE  171 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.95  E-value=9.8e-27  Score=195.83  Aligned_cols=103  Identities=41%  Similarity=0.768  Sum_probs=80.6

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ....+||+++|++|||||||+++|++..+                       ...+.++++.++....+.+++..+.+.+
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~-----------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l   79 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTF-----------------------CEACKSTVGVDFKIKTVELRGKKIRLQI   79 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC-------------------------------CCTTEEEEEEEEEETTEEEEEEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCC-----------------------CcCCCCccceeEEEEEEEECCeEEEEEE
Confidence            34579999999999999999999998543                       3334556677777777778888889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus        80 ~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~  125 (192)
T 2il1_A           80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID  125 (192)
T ss_dssp             EEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            9999999988888888888888888888888888877777765553

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.95  E-value=3.2e-27  Score=199.13  Aligned_cols=187  Identities=20%  Similarity=0.239  Sum_probs=137.1

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeee-eecCcE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTM-YLEDRT   84 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~   84 (355)
                      +.....+.+||+++|++|||||||++. +.+.+...+.++.            ......+.+|++.++....+ .+++..
T Consensus         7 ~~~~~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~~   73 (198)
T 3t1o_A            7 NFANREINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEM------------VSLATEDERTLFFDFLPLDIGEVKGFK   73 (198)
T ss_dssp             ETTTTEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCC------------EEEECSSCEEEEEEECCSSCCCSSSCE
T ss_pred             chhccccccEEEEECCCCCCHHHHHHH-HHhhccccccccc------------cccccccccceeeeecccccccccCCc
Confidence            344556789999999999999999955 4555555544432            11223456788888777776 778888


Q ss_pred             EEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725         85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS  164 (355)
Q Consensus        85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
                      +.+.+|||||++.|..++..+++.+|++++|||++++.+++....                                   
T Consensus        74 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s-----------------------------------  118 (198)
T 3t1o_A           74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAES-----------------------------------  118 (198)
T ss_dssp             EEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHH-----------------------------------
T ss_pred             eEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHH-----------------------------------
Confidence            999999999999999999999999999999999985433332211                                   


Q ss_pred             cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccc
Q psy15725        165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR  244 (355)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~  244 (355)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (198)
T 3t1o_A          119 --------------------------------------------------------------------------------  118 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEe
Q psy15725        245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIET  323 (355)
Q Consensus       245 ~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~  323 (355)
                                              ++.+..|+..+.. ...++|+++|+||+|+.+  .+..+++..+++..++ +++++
T Consensus       119 ------------------------~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~  171 (198)
T 3t1o_A          119 ------------------------MRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEA  171 (198)
T ss_dssp             ------------------------HHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEEC
T ss_pred             ------------------------HHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEE
Confidence                                    1122233333311 114678888888888753  3667777788888888 99999


Q ss_pred             cCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        324 SAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       324 SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      ||++|.||+++|++|.+.+.+..+
T Consensus       172 Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          172 VATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             BGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCcCHHHHHHHHHHHHHHHhh
Confidence            999999999999999998876543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.94  E-value=5.4e-26  Score=188.30  Aligned_cols=171  Identities=34%  Similarity=0.588  Sum_probs=136.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++++++.+                       ...+.++++.++....+.+++..+.+.+
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i   60 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKF-----------------------DTQLFHTIGVEFLNKDLEVDGHFVTMQI   60 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCC-----------------------CC----CCSEEEEEEEEEETTEEEEEEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCC-----------------------CCCCCCceeeeEEEEEEEECCEEEEEEE
Confidence            45679999999999999999999998544                       3344566677777778888888899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||++.+...+..+++.+|++++|||++++.+++.+..|+..+......                             
T Consensus        61 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------------------------  111 (177)
T 1wms_A           61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV-----------------------------  111 (177)
T ss_dssp             EECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-----------------------------
T ss_pred             EeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccc-----------------------------
Confidence            999999999999999999999999999999999998888887776432100                             


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       112 --------------------------------------------------------------------------------  111 (177)
T 1wms_A          112 --------------------------------------------------------------------------------  111 (177)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh-hcCcEEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-ELNVMFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~SA~~~  328 (355)
                                                      ....++|+++|+||+|+. .+.+..++...+++ ..+++++++||++|
T Consensus       112 --------------------------------~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (177)
T 1wms_A          112 --------------------------------KEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDA  158 (177)
T ss_dssp             --------------------------------SCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTC
T ss_pred             --------------------------------cccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence                                            001467888888888876 45566667777776 55689999999999


Q ss_pred             CCHHHHHHHHHHHcCCC
Q psy15725        329 YNVKQLFRRVAAALPGM  345 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~  345 (355)
                      .||+++|++|.+.+.+.
T Consensus       159 ~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          159 TNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             TTHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=196.41  Aligned_cols=104  Identities=38%  Similarity=0.747  Sum_probs=81.0

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|++..+..                       .+.++++.++....+.+++....+.+
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~l~i   81 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-----------------------NISATLGVDFQMKTLIVDGERTVLQL   81 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC---------------------------------CEEEEEEETTEEEEEEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------cCCCCccceeEEEEEEECCEEEEEEE
Confidence            3457999999999999999999999955433                       34455666777777778888889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      |||||++.+..++..+++.+|++++|||++++.+++.+..|+..+..
T Consensus        82 ~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~  128 (199)
T 2p5s_A           82 WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED  128 (199)
T ss_dssp             EECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888888877754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.94  E-value=2.5e-26  Score=188.21  Aligned_cols=165  Identities=35%  Similarity=0.584  Sum_probs=126.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++++.+..+...+                       .++.+..+ ...+.+++..+.+.+||
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~l~D   58 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----------------------EPTKADSY-RKKVVLDGEEVQIDILD   58 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----------------------CTTCCEEE-EEEEEETTEEEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCC-----------------------CCCcceEE-EEEEEECCEEEEEEEEE
Confidence            5799999999999999999999996544333                       33444333 33455677788999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||++++...+..+++.+|++++|||++++.+|+.+..|+..+....                                 
T Consensus        59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---------------------------------  105 (168)
T 1u8z_A           59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---------------------------------  105 (168)
T ss_dssp             CCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---------------------------------
Confidence            99999998888888889999999999998888887777766653210                                 


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (168)
T 1u8z_A          106 --------------------------------------------------------------------------------  105 (168)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     ...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.||
T Consensus       106 -------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (168)
T 1u8z_A          106 -------------------------------EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANV  154 (168)
T ss_dssp             -------------------------------CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred             -------------------------------CCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence                                           0035677777788777665666677777777778899999999999999


Q ss_pred             HHHHHHHHHHcCC
Q psy15725        332 KQLFRRVAAALPG  344 (355)
Q Consensus       332 ~~l~~~l~~~i~~  344 (355)
                      +++|++|.+.+.+
T Consensus       155 ~~l~~~l~~~i~~  167 (168)
T 1u8z_A          155 DKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=197.23  Aligned_cols=169  Identities=35%  Similarity=0.584  Sum_probs=132.8

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      .+.+.+||+|+|++|||||||+++|.+..+...                       +.+|.+..+ ...+.+++..+.+.
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~~~   65 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVED-----------------------YEPTKADSY-RKKVVLDGEEVQID   65 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-----------------------CCTTCCEEE-EEEEEETTEEEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------CCCccceEE-EEEEEECCEEEEEE
Confidence            456789999999999999999999998654433                       334444333 34456677778999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+....                              
T Consensus        66 l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------  115 (206)
T 2bov_A           66 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK------------------------------  115 (206)
T ss_dssp             EEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT------------------------------
T ss_pred             EEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc------------------------------
Confidence            99999999999888888889999999999998888887777766654210                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (206)
T 2bov_A          116 --------------------------------------------------------------------------------  115 (206)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                        ...++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|
T Consensus       116 ----------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  161 (206)
T 2bov_A          116 ----------------------------------EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTR  161 (206)
T ss_dssp             ----------------------------------TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred             ----------------------------------CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCC
Confidence                                              0135777788888887666667777777788778899999999999


Q ss_pred             CCHHHHHHHHHHHcCCC
Q psy15725        329 YNVKQLFRRVAAALPGM  345 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~  345 (355)
                      .||+++|++|.+.+...
T Consensus       162 ~gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          162 ANVDKVFFDLMREIRAR  178 (206)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHc
Confidence            99999999999988653

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.94  E-value=1.5e-26  Score=193.24  Aligned_cols=171  Identities=35%  Similarity=0.577  Sum_probs=130.8

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ....+.+||+++|++|||||||+++|.+..+...+                       .++.+..+ ...+..++..+.+
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~   68 (187)
T 2a9k_A           13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----------------------EPTKADSY-RKKVVLDGEEVQI   68 (187)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC-----------------------CTTCCEEE-EEEEEETTEEEEE
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcC-----------------------CCccceEE-EEEEEECCEEEEE
Confidence            34567899999999999999999999996544433                       33444333 3445567777899


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      .+|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+....                             
T Consensus        69 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------------------------  119 (187)
T 2a9k_A           69 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-----------------------------  119 (187)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred             EEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-----------------------------
Confidence            999999999998888888889999999999988888877777766653210                             


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (187)
T 2a9k_A          120 --------------------------------------------------------------------------------  119 (187)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                                                         ...++|+++|+||+|+.+.+.+...+...+++..+++++++||++
T Consensus       120 -----------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (187)
T 2a9k_A          120 -----------------------------------EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT  164 (187)
T ss_dssp             -----------------------------------CCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             -----------------------------------CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCC
Confidence                                               003567777777777765556667777778888889999999999


Q ss_pred             CCCHHHHHHHHHHHcCCCC
Q psy15725        328 GYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~~  346 (355)
                      |.||+++|++|.+.+.+.+
T Consensus       165 ~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          165 RANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             CTTHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhh
Confidence            9999999999999987543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=5.2e-26  Score=189.83  Aligned_cols=179  Identities=28%  Similarity=0.501  Sum_probs=138.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|.++.+...+.+                       |++..+ ...+.+++..+.+.+|
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~-----------------------t~~~~~-~~~~~~~~~~~~~~i~   58 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-----------------------TVFDNY-SANVMVDGKPVNLGLW   58 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC-----------------------CSCCEE-EEEEEETTEEEEEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCC-----------------------ccccee-EEEEEECCEEEEEEEE
Confidence            4679999999999999999999998665444433                       333222 3445667788899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||||++.+...+..+++.+|++++|||++++.+|+.+. .|+..+....                               
T Consensus        59 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------  107 (186)
T 1mh1_A           59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-------------------------------  107 (186)
T ss_dssp             CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-------------------------------
T ss_pred             ECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-------------------------------
Confidence            99999999999999999999999999999999999986 7888876431                               


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                 .++|+++|+||+|+.+...                                                  
T Consensus       108 -----------~~~piilv~nK~Dl~~~~~--------------------------------------------------  126 (186)
T 1mh1_A          108 -----------PNTPIILVGTKLDLRDDKD--------------------------------------------------  126 (186)
T ss_dssp             -----------TTSCEEEEEECHHHHTCHH--------------------------------------------------
T ss_pred             -----------CCCCEEEEeEcccccccch--------------------------------------------------
Confidence                       2789999999999732110                                                  


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~  328 (355)
                                               ..+.+...                 ..+.+..+++..+++..++ +++++||++|
T Consensus       127 -------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (186)
T 1mh1_A          127 -------------------------TIEKLKEK-----------------KLTPITYPQGLAMAKEIGAVKYLECSALTQ  164 (186)
T ss_dssp             -------------------------HHHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             -------------------------hhhhhccc-----------------ccccCCHHHHHHHHHhcCCcEEEEecCCCc
Confidence                                     00001110                 1244556677778888886 9999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~~  347 (355)
                      .||+++|++|.+.+.....
T Consensus       165 ~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          165 RGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             TTHHHHHHHHHHHHSCCCC
T ss_pred             cCHHHHHHHHHHHHhcccc
Confidence            9999999999999987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.94  E-value=2.8e-26  Score=194.27  Aligned_cols=181  Identities=29%  Similarity=0.487  Sum_probs=133.1

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ...+.+||+++|++|||||||+++|.++.+...                       +.+|++..+ ...+..++..+.+.
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~~~   71 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTE-----------------------YIPTAFDNF-SAVVSVDGRPVRLQ   71 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC-------------------------------CCSSEEE-EEEEEETTEEEEEE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------CCCccccee-EEEEEECCEEEEEE
Confidence            356689999999999999999999998554333                       334444333 34556677788999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      +|||||+++|..++..+++.+|++++|||++++.+|+.+. .|+..+...                              
T Consensus        72 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------  121 (201)
T 2q3h_A           72 LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH------------------------------  121 (201)
T ss_dssp             EEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH------------------------------
T ss_pred             EEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh------------------------------
Confidence            9999999999999999999999999999999999999986 798888643                              


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                  ..++|+++|+||+|+.+....                                               
T Consensus       122 ------------~~~~p~ilv~nK~Dl~~~~~~-----------------------------------------------  142 (201)
T 2q3h_A          122 ------------CPKAPIILVGTQSDLREDVKV-----------------------------------------------  142 (201)
T ss_dssp             ------------CSSSCEEEEEECGGGGGCHHH-----------------------------------------------
T ss_pred             ------------CCCCCEEEEEECHhhhhchhh-----------------------------------------------
Confidence                        137899999999997431100                                               


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAK  326 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~  326 (355)
                                                  ...+...                 ..+.+..+++..+++..++ ++++|||+
T Consensus       143 ----------------------------~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  177 (201)
T 2q3h_A          143 ----------------------------LIELDKC-----------------KEKPVPEEAAKLLAEEIKAASYIECSAL  177 (201)
T ss_dssp             ----------------------------HHHHHTT-----------------TCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             ----------------------------hhhhccc-----------------ccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence                                        0001110                 1244556677777777776 99999999


Q ss_pred             CCCCHHHHHHHHHHHcCCCCC
Q psy15725        327 AGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      +|.||+++|++|.+.+.+.+.
T Consensus       178 ~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          178 TQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcccc
Confidence            999999999999999876544

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.94  E-value=3.8e-26  Score=190.79  Aligned_cols=177  Identities=25%  Similarity=0.477  Sum_probs=134.8

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      +.+.+||+++|++|||||||+++|.+..+...+                       .||++..+ ...+.+++..+.+.+
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~i   59 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY-----------------------VPTVFENY-TASFEIDTQRIELSL   59 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----------------------CCCSEEEE-EEEEECSSCEEEEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------------CCccceeE-EEEEEECCEEEEEEE
Confidence            456799999999999999999999996554443                       34444443 334556777889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |||||++.|..++..+++.+|++++|||++++.+|+.+ ..|+..+...                               
T Consensus        60 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------------------------  108 (184)
T 1m7b_A           60 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-------------------------------  108 (184)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------------------------
T ss_pred             EECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH-------------------------------
Confidence            99999999999999999999999999999999999998 7898887643                               


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                 ..++|+++|+||+|+.++..                                                 
T Consensus       109 -----------~~~~piilv~nK~Dl~~~~~-------------------------------------------------  128 (184)
T 1m7b_A          109 -----------CPNTKMLLVGCKSDLRTDVS-------------------------------------------------  128 (184)
T ss_dssp             -----------CTTCEEEEEEECGGGGGCHH-------------------------------------------------
T ss_pred             -----------CCCCCEEEEEEcchhhcchh-------------------------------------------------
Confidence                       13789999999999742100                                                 


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCC-
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAK-  326 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~-  326 (355)
                                                ....+...                 ..+.+..+++..+++..+ +++++|||+ 
T Consensus       129 --------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  165 (184)
T 1m7b_A          129 --------------------------TLVELSNH-----------------RQTPVSYDQGANMAKQIGAATYIECSALQ  165 (184)
T ss_dssp             --------------------------HHHHHHTT-----------------TCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             --------------------------hHhhhhhc-----------------ccCCCCHHHHHHHHHHcCCcEEEEeeecC
Confidence                                      00011110                 124456667777887776 699999999 


Q ss_pred             CCCCHHHHHHHHHHHcCC
Q psy15725        327 AGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~  344 (355)
                      ++.||+++|++|.+.+.+
T Consensus       166 ~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          166 SENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            689999999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.94  E-value=1.9e-26  Score=188.71  Aligned_cols=164  Identities=35%  Similarity=0.577  Sum_probs=127.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++++.++.+...+                       .++.+ +.....+.+++....+.+||
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------~~~~~-~~~~~~~~~~~~~~~~~l~D   57 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKY-----------------------DPTIE-DFYRKEIEVDSSPSVLEILD   57 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------------------CTTCC-EEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccC-----------------------CCCcc-eeEEEEEEECCEEEEEEEEE
Confidence            5689999999999999999999996544433                       33444 22345566777888899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||++.+..++..+++.+|++++|||++++.+++.+..|+..+....                                 
T Consensus        58 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---------------------------------  104 (167)
T 1kao_A           58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---------------------------------  104 (167)
T ss_dssp             CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---------------------------------
T ss_pred             CCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---------------------------------
Confidence            99999998888888888999999999998888877777766553210                                 


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (167)
T 1kao_A          105 --------------------------------------------------------------------------------  104 (167)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     ...+.|+++|+||+|+.+.+.+...+...+++..+++++++||++|.|+
T Consensus       105 -------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  153 (167)
T 1kao_A          105 -------------------------------RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMV  153 (167)
T ss_dssp             -------------------------------TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHH
T ss_pred             -------------------------------CCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCH
Confidence                                           0035677777777776655566666777777777889999999999999


Q ss_pred             HHHHHHHHHHcC
Q psy15725        332 KQLFRRVAAALP  343 (355)
Q Consensus       332 ~~l~~~l~~~i~  343 (355)
                      +++|++|.+.+.
T Consensus       154 ~~l~~~l~~~~~  165 (167)
T 1kao_A          154 DELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998874

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.94  E-value=3.2e-26  Score=196.06  Aligned_cols=181  Identities=28%  Similarity=0.521  Sum_probs=120.0

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ...+.+||+++|++|||||||+++|+++.+...+                       .+|++.. ....+.+++..+.+.
T Consensus        30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~-----------------------~~t~~~~-~~~~~~~~~~~~~l~   85 (214)
T 2j1l_A           30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESY-----------------------TPTVFER-YMVNLQVKGKPVHLH   85 (214)
T ss_dssp             --CCEEEEEEEECTTSSHHHHHHHHHC------------------------------CCCCCEE-EEEEEEETTEEEEEE
T ss_pred             CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCC-----------------------CCcccee-EEEEEEECCEEEEEE
Confidence            3456799999999999999999999986554433                       3333322 234456677888999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      +|||||++.|..++..+++.+|++++|||++++.+|+.+. .|+..+...                              
T Consensus        86 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------  135 (214)
T 2j1l_A           86 IWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF------------------------------  135 (214)
T ss_dssp             EEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH------------------------------
T ss_pred             EEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh------------------------------
Confidence            9999999999999999999999999999999999999986 798888643                              


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                  ..++|+++|+||+|+...+..                                               
T Consensus       136 ------------~~~~piilv~nK~Dl~~~~~~-----------------------------------------------  156 (214)
T 2j1l_A          136 ------------CKKVPIIVVGCKTDLRKDKSL-----------------------------------------------  156 (214)
T ss_dssp             ------------CSSCCEEEEEECGGGGSCHHH-----------------------------------------------
T ss_pred             ------------CCCCCEEEEEEChhhhccchh-----------------------------------------------
Confidence                        137899999999997431100                                               


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAK  326 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~  326 (355)
                                                  .+.+..                 ...+.+..+++..+++..++ ++++|||+
T Consensus       157 ----------------------------~~~~~~-----------------~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  191 (214)
T 2j1l_A          157 ----------------------------VNKLRR-----------------NGLEPVTYHRGQEMARSVGAVAYLECSAR  191 (214)
T ss_dssp             ----------------------------HHHHHH-----------------TTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             ----------------------------hhhhcc-----------------cccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence                                        000001                 01244666777788888887 99999999


Q ss_pred             CCCCHHHHHHHHHHHcCCCCC
Q psy15725        327 AGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      +|.||+++|++|.+.+.+.+.
T Consensus       192 ~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          192 LHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             TTBSHHHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHHHHhhc
Confidence            999999999999999886654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.94  E-value=9e-26  Score=187.28  Aligned_cols=95  Identities=23%  Similarity=0.417  Sum_probs=75.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|.++.+..                        +.||++.. ....+.+++..+.+.+|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~------------------------~~~t~~~~-~~~~~~~~~~~~~l~i~   59 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV------------------------LEKTESEQ-YKKEMLVDGQTHLVLIR   59 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC------------------------CSSCSSSE-EEEEEEETTEEEEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC------------------------cCCCccee-EEEEEEECCEEEEEEEE
Confidence            578999999999999999999999966543                        23444433 34556677888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||+|+++     ..+++.+|++++|||++++++|+.+..|++.+.
T Consensus        60 Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~   99 (178)
T 2iwr_A           60 EEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLS   99 (178)
T ss_dssp             ECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             ECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            9999876     456788999999999999888888888766654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.94  E-value=3.4e-26  Score=195.51  Aligned_cols=177  Identities=29%  Similarity=0.499  Sum_probs=132.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|.++.+...+                       .+|++..+ ...+.+++..+.+.+|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~i~   62 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----------------------IPTVFDNF-SANVAVDGQIVNLGLW   62 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----------------------CCSSCCCE-EEEEECSSCEEEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccC-----------------------CCccceeE-EEEEEECCEEEEEEEE
Confidence            46799999999999999999999996654443                       34444333 3345567778899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||||++.|..++..+++.+|++++|||++++++|+.+. .|+..+...                                
T Consensus        63 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--------------------------------  110 (212)
T 2j0v_A           63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--------------------------------  110 (212)
T ss_dssp             CCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--------------------------------
T ss_pred             ECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--------------------------------
Confidence            99999999999999999999999999999999999986 798887643                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                ..++|+++|+||+|+.+.+.+                                                 
T Consensus       111 ----------~~~~piilv~nK~Dl~~~~~~-------------------------------------------------  131 (212)
T 2j0v_A          111 ----------APNVPIVLVGTKLDLRDDKGY-------------------------------------------------  131 (212)
T ss_dssp             ----------CTTCCEEEEEECHHHHTCHHH-------------------------------------------------
T ss_pred             ----------CCCCCEEEEEeCHHhhhCccc-------------------------------------------------
Confidence                      126889999999996321100                                                 


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~  328 (355)
                                                    ..               +  ....+..+++..+++..++ +++++||++|
T Consensus       132 ------------------------------~~---------------~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A          132 ------------------------------LA---------------D--HTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             ------------------------------HH---------------T--CSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             ------------------------------cc---------------c--ccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence                                          00               0  0123445566667777775 9999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMDSTE  349 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~~~~  349 (355)
                      .||+++|++|.+.+...+...
T Consensus       165 ~gi~~l~~~l~~~~~~~~~~~  185 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPPRRK  185 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC----
T ss_pred             CCHHHHHHHHHHHHhhhhhhc
Confidence            999999999999998765443

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=5.9e-26  Score=186.85  Aligned_cols=168  Identities=29%  Similarity=0.462  Sum_probs=129.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|+++.+...+.                       ++++..+ ......++....+.+||
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----------------------~t~~~~~-~~~~~~~~~~~~~~~~D   57 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYI-----------------------PTVEDTY-RQVISCDKSICTLQITD   57 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCC-----------------------CCSCEEE-EEEEEETTEEEEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-----------------------CCccccE-EEEEEECCEEEEEEEEE
Confidence            46899999999999999999999965544333                       3333332 23445667778899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||++++...+..+++.+|++++|||++++.+++.+..|+..+.....                                
T Consensus        58 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~--------------------------------  105 (172)
T 2erx_A           58 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG--------------------------------  105 (172)
T ss_dssp             CCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC--------------------------------
T ss_pred             CCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--------------------------------
Confidence            999999999888889999999999999998888887777666542200                                


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                             .                                                                        
T Consensus       106 -------~------------------------------------------------------------------------  106 (172)
T 2erx_A          106 -------D------------------------------------------------------------------------  106 (172)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------C------------------------------------------------------------------------
Confidence                   0                                                                        


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                      ..++|+++|+||+|+.+.+.+...+...+++..+++++++||++|.||
T Consensus       107 --------------------------------~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi  154 (172)
T 2erx_A          107 --------------------------------VESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNV  154 (172)
T ss_dssp             ----------------------------------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             --------------------------------CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCH
Confidence                                            024677777777777655566666667777777899999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q psy15725        332 KQLFRRVAAALPGMD  346 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~  346 (355)
                      +++|++|.+.+.+++
T Consensus       155 ~~l~~~l~~~~~~~~  169 (172)
T 2erx_A          155 KELFQELLNLEKRRT  169 (172)
T ss_dssp             HHHHHHHHHTCCSSC
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999887654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=5.5e-26  Score=195.00  Aligned_cols=175  Identities=25%  Similarity=0.435  Sum_probs=130.8

Q ss_pred             CCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecC-cEE
Q psy15725          7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTV   85 (355)
Q Consensus         7 ~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~   85 (355)
                      .......+||+++|++|||||||+++|+++.+.                       ..+.++.+............ ..+
T Consensus         5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~   61 (218)
T 4djt_A            5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFE-----------------------KNYNATVGAVNHPVTFLDDQGNVI   61 (218)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHCBCTTCSTT-----------------------CEEETTTTEEEEEEEEEBTTSCEE
T ss_pred             cccccCccEEEEECCCCCCHHHHHHHHhcCCCC-----------------------CCCCCccceeeEEEEEEeCCCcEE
Confidence            344567899999999999999999999985543                       33445555555555544433 448


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      .+.+|||||++.+..++..+++.+|++++|||++++.+++.+..|+..+...                            
T Consensus        62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----------------------------  113 (218)
T 4djt_A           62 KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAV----------------------------  113 (218)
T ss_dssp             EEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----------------------------
T ss_pred             EEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----------------------------
Confidence            8999999999999888888888899999999988888887777776665321                            


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccc
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRS  245 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~  245 (355)
                                                                                                      
T Consensus       114 --------------------------------------------------------------------------------  113 (218)
T 4djt_A          114 --------------------------------------------------------------------------------  113 (218)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecC
Q psy15725        246 LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA  325 (355)
Q Consensus       246 ~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA  325 (355)
                                                           ...++|+++|+||+|+.+.+.+.......++...+++++++||
T Consensus       114 -------------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (218)
T 4djt_A          114 -------------------------------------VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISA  156 (218)
T ss_dssp             -------------------------------------HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBT
T ss_pred             -------------------------------------cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEec
Confidence                                                 1134677888888887666667777777788888899999999


Q ss_pred             CCCCCHHHHHHHHHHHcCCCCCCC
Q psy15725        326 KAGYNVKQLFRRVAAALPGMDSTE  349 (355)
Q Consensus       326 ~~~~gv~~l~~~l~~~i~~~~~~~  349 (355)
                      ++|.||+++|++|.+.+.......
T Consensus       157 ~~g~gv~~l~~~l~~~~~~~~~~~  180 (218)
T 4djt_A          157 KTAHNFGLPFLHLARIFTGRPDLI  180 (218)
T ss_dssp             TTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHhcccccc
Confidence            999999999999999998765543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.94  E-value=1.8e-25  Score=189.33  Aligned_cols=100  Identities=40%  Similarity=0.818  Sum_probs=74.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc--------
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR--------   83 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------   83 (355)
                      +.+||+|+|++|||||||+++|++..+...+.|++                       +.++....+.+++.        
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-----------------------~~~~~~~~~~~~~~~~~~~~~~   62 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTI-----------------------GASFCTYVVNLNDINIKNNSNN   62 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC-----------------------SCEEEEEEEETTC---------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccc-----------------------cceeEEEEEEecCccccccccc
Confidence            56999999999999999999999977665554443                       33333333333222        


Q ss_pred             -----------------------------EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         84 -----------------------------TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        84 -----------------------------~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                                                   ...+.+|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i  142 (208)
T 3clv_A           63 EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL  142 (208)
T ss_dssp             ----------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence                                         278999999999998888888888888888888888877777666665554

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.94  E-value=4.7e-26  Score=189.32  Aligned_cols=103  Identities=44%  Similarity=0.813  Sum_probs=73.4

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-CcEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQ   88 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~   88 (355)
                      ..+.+||+++|++|||||||++++++..+...                       +.++++.++....+.++ +....+.
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~   61 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ-----------------------YKATIGADFLTKEVTVDGDKVATMQ   61 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT-----------------------C---CCCSCEEEEECCSSSCCEEEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc-----------------------cCCccceEEEEEEEEEcCCcEEEEE
Confidence            34679999999999999999999999554433                       44555666666666666 5567899


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +|||||++.+...+..+++.+|++++|||++++.+++.+..|+..+.
T Consensus        62 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  108 (182)
T 1ky3_A           62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL  108 (182)
T ss_dssp             EECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988888877764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.94  E-value=1.3e-26  Score=198.70  Aligned_cols=168  Identities=34%  Similarity=0.603  Sum_probs=134.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc-------
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-------   83 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-------   83 (355)
                      .+.+||+++|++|||||||+++|++..+...                       +.+|++.++....+.+++.       
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~   79 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPK-----------------------FITTVGIDFREKRVVYNAQGPNGSSG   79 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCE-----------------------EEEEEEEEEEEEEEEEEC-------C
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcC-----------------------CCCceeEEEEEEEEEECCcccccccc
Confidence            4579999999999999999999998655433                       3455566666666666655       


Q ss_pred             ---EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         84 ---TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        84 ---~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                         ...+.+|||||++.|...+..+++.+|++++|||++++.+++.+..|+..+....                      
T Consensus        80 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~----------------------  137 (217)
T 2f7s_A           80 KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA----------------------  137 (217)
T ss_dssp             CEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC----------------------
T ss_pred             CceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----------------------
Confidence               7889999999999999999999999999999999999999988888866542100                      


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ  240 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~  240 (355)
                                        .                                                             
T Consensus       138 ------------------~-------------------------------------------------------------  138 (217)
T 2f7s_A          138 ------------------Y-------------------------------------------------------------  138 (217)
T ss_dssp             ------------------T-------------------------------------------------------------
T ss_pred             ------------------C-------------------------------------------------------------
Confidence                              0                                                             


Q ss_pred             ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725        241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF  320 (355)
Q Consensus       241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  320 (355)
                                                                 ..++|+++|+||+|+.+.+.+...+...+++..++++
T Consensus       139 -------------------------------------------~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~  175 (217)
T 2f7s_A          139 -------------------------------------------CENPDIVLIGNKADLPDQREVNERQARELADKYGIPY  175 (217)
T ss_dssp             -------------------------------------------TTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCE
T ss_pred             -------------------------------------------cCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcE
Confidence                                                       0357788888888876656677777778888888999


Q ss_pred             EEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        321 IETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       321 ~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +++||++|.||+++|++|.+.+.+.
T Consensus       176 ~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          176 FETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=3.8e-26  Score=192.80  Aligned_cols=167  Identities=34%  Similarity=0.499  Sum_probs=128.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      +.+.+||+++|++|||||||+++|+++.+...+                       .+|++..+ ...+.+++....+.+
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~l   80 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-----------------------DPTLESTY-RHQATIDDEVVSMEI   80 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------------------CTTCCEEE-EEEEEETTEEEEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCccc-----------------------CCCCCceE-EEEEEECCEEEEEEE
Confidence            356799999999999999999999996554443                       34444333 344566777889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||++. ...+..+++.+|++++|||++++++|+.+..|+..+....                               
T Consensus        81 ~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-------------------------------  128 (196)
T 2atv_A           81 LDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK-------------------------------  128 (196)
T ss_dssp             EECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-------------------------------
T ss_pred             EECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhh-------------------------------
Confidence            99999987 6677778888899999999888888887777766553210                               


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (196)
T 2atv_A          129 --------------------------------------------------------------------------------  128 (196)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                       ...++|+++|+||+|+.+.+.+...++..+++..+++++++||++|.
T Consensus       129 ---------------------------------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~  175 (196)
T 2atv_A          129 ---------------------------------KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGE  175 (196)
T ss_dssp             ---------------------------------TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCT
T ss_pred             ---------------------------------CCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCC
Confidence                                             01356777777777776556666777777787788999999999999


Q ss_pred             -CHHHHHHHHHHHcCCC
Q psy15725        330 -NVKQLFRRVAAALPGM  345 (355)
Q Consensus       330 -gv~~l~~~l~~~i~~~  345 (355)
                       ||+++|++|.+.+.+.
T Consensus       176 ~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          176 GNITEIFYELCREVRRR  192 (196)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhh
Confidence             9999999999988654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.94  E-value=3.2e-26  Score=196.98  Aligned_cols=109  Identities=28%  Similarity=0.642  Sum_probs=93.3

Q ss_pred             CCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcE
Q psy15725          5 GDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT   84 (355)
Q Consensus         5 ~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~   84 (355)
                      +....+.+.+||+++|++|||||||+++|+.+.                       +...+.++.+.++.......++..
T Consensus         7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~-----------------------~~~~~~~t~~~~~~~~~~~~~~~~   63 (221)
T 3gj0_A            7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGE-----------------------FEKKYVATLGVEVHPLVFHTNRGP   63 (221)
T ss_dssp             CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHH-----------------------HTCEEETTTTEEEEEEEEEETTEE
T ss_pred             ccCCCcccceEEEEECCCCCCHHHHHHHHHcCC-----------------------CCCCCCCccceeEEEEEEEECCEE
Confidence            345566788999999999999999999988743                       334456677788888888888889


Q ss_pred             EEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      +.+.+|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+..
T Consensus        64 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  115 (221)
T 3gj0_A           64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR  115 (221)
T ss_dssp             EEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888887754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.94  E-value=8.1e-26  Score=192.24  Aligned_cols=177  Identities=25%  Similarity=0.484  Sum_probs=134.8

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ....+||+++|++|||||||+++|.+..+...                       +.+|++..+ ...+.+++..+.+.+
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-----------------------~~~t~~~~~-~~~~~~~~~~~~l~i   80 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-----------------------YVPTVFENY-TASFEIDTQRIELSL   80 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-----------------------CCCCSEEEE-EEEEESSSSEEEEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------cCCccceeE-EEEEEECCEEEEEEE
Confidence            34679999999999999999999999655444                       344444444 344566777889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |||||++.|..++..+++.+|++++|||++++.+|+.+ ..|+..+...                               
T Consensus        81 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~-------------------------------  129 (205)
T 1gwn_A           81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-------------------------------  129 (205)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------------------------
T ss_pred             EeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-------------------------------
Confidence            99999999999999999999999999999999999998 7898888643                               


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                 ..++|+++|+||+|+.+...                                                 
T Consensus       130 -----------~~~~piilv~nK~Dl~~~~~-------------------------------------------------  149 (205)
T 1gwn_A          130 -----------CPNTKMLLVGCKSDLRTDVS-------------------------------------------------  149 (205)
T ss_dssp             -----------CTTCEEEEEEECGGGGGCHH-------------------------------------------------
T ss_pred             -----------CCCCCEEEEEechhhccchh-------------------------------------------------
Confidence                       13789999999999742100                                                 


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCC-
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAK-  326 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~-  326 (355)
                                            .    ...+...                 ..+.+..+++..+++..+ +++++|||+ 
T Consensus       150 ----------------------~----~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  186 (205)
T 1gwn_A          150 ----------------------T----LVELSNH-----------------RQTPVSYDQGANMAKQIGAATYIECSALQ  186 (205)
T ss_dssp             ----------------------H----HHHHHTT-----------------TCCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             ----------------------h----hhhhccc-----------------ccCCCCHHHHHHHHHHcCCCEEEEeeecc
Confidence                                  0    0011110                 124456667777877776 699999999 


Q ss_pred             CCCCHHHHHHHHHHHcCC
Q psy15725        327 AGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~  344 (355)
                      +|.||+++|++|.+.+.+
T Consensus       187 ~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          187 SENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            689999999999988753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=2.1e-25  Score=190.56  Aligned_cols=102  Identities=40%  Similarity=0.803  Sum_probs=81.6

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+|+|++|||||||+++|++..+..                       .+.++++.++....+.+++..+.+.+|
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~   74 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-----------------------SFITTIGIDFKIKTVDINGKKVKLQLW   74 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------SSSCCCSCCEEEEEEEETTEEEEEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCc-----------------------ccCCcccceEEEEEEEECCEEEEEEEE
Confidence            456999999999999999999999855433                       344556667777777778888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        75 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~  119 (213)
T 3cph_A           75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVN  119 (213)
T ss_dssp             CCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             eCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999998888888888888888888888777777666665543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.94  E-value=5.3e-26  Score=190.26  Aligned_cols=101  Identities=29%  Similarity=0.557  Sum_probs=79.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|++..+...+                       .++.+ +.....+.+++..+.+.+|
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~~~i~   57 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEY-----------------------DPTIE-DSYRKQVVIDGETCLLDIL   57 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----------------------CTTCC-EEEEEEEEETTEEEEEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------------CCCch-heEEEEEEECCcEEEEEEE
Confidence            36799999999999999999999986544433                       33333 3444556677888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        58 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  102 (189)
T 4dsu_A           58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK  102 (189)
T ss_dssp             ECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888888877776654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=3.1e-25  Score=188.85  Aligned_cols=179  Identities=28%  Similarity=0.496  Sum_probs=134.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ..++||+++|++|||||||+++|.+..+...+                       .++++..+.. .+..++..+.+.+|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~~~-~~~~~~~~~~~~i~   78 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY-----------------------VPTVFENYVA-DIEVDGKQVELALW   78 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC------------------------------CCEEEE-EEEETTEEEEEEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC-----------------------CCcccceEEE-EEEECCEEEEEEEE
Confidence            46789999999999999999999996654443                       3444444433 35567778899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||||++.+...+..+++.+|++++|||++++.+|+.+ ..|+..+...                                
T Consensus        79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------  126 (207)
T 2fv8_A           79 DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--------------------------------  126 (207)
T ss_dssp             ECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--------------------------------
T ss_pred             ECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--------------------------------
Confidence            9999999999999999999999999999999999988 6788887643                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                ..++|+++|+||+|+.+..                                                   
T Consensus       127 ----------~~~~piilv~nK~Dl~~~~---------------------------------------------------  145 (207)
T 2fv8_A          127 ----------CPNVPIILVANKKDLRSDE---------------------------------------------------  145 (207)
T ss_dssp             ----------STTCCEEEEEECGGGGGCH---------------------------------------------------
T ss_pred             ----------CCCCCEEEEEEchhhhccc---------------------------------------------------
Confidence                      1378999999999974311                                                   


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~  328 (355)
                                           ..   .+.+...                 ..+.+..+++..+++..++ +++++||++|
T Consensus       146 ---------------------~~---~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g  184 (207)
T 2fv8_A          146 ---------------------HV---RTELARM-----------------KQEPVRTDDGRAMAVRIQAYDYLECSAKTK  184 (207)
T ss_dssp             ---------------------HH---HHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             ---------------------cc---hhhhhhc-----------------ccCCCCHHHHHHHHHhcCCCEEEEeeCCCC
Confidence                                 00   0011110                 0133556677777877776 9999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~~  347 (355)
                      .||+++|++|.+.+.+.+.
T Consensus       185 ~gi~el~~~l~~~i~~~~~  203 (207)
T 2fv8_A          185 EGVREVFETATRAALQKRY  203 (207)
T ss_dssp             TTHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            9999999999999886543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.94  E-value=5.8e-26  Score=191.79  Aligned_cols=102  Identities=22%  Similarity=0.369  Sum_probs=79.0

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      +.+.+..||+|+|++|||||||+++|++..+...                      .+.+|++.....    +++....+
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----------------------~~~~t~~~~~~~----~~~~~~~~   65 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK----------------------HITATVGYNVET----FEKGRVAF   65 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC--------------------------CCCCCSSEEEEE----EEETTEEE
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc----------------------ccccccceeEEE----EEeCCEEE
Confidence            4566789999999999999999999999654440                      234455533322    23456789


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      .+|||||++.+..++..+++.+|++|+|||++++++|..+..|+..+.
T Consensus        66 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~  113 (199)
T 4bas_A           66 TVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAML  113 (199)
T ss_dssp             EEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred             EEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988877764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.94  E-value=3.5e-25  Score=188.28  Aligned_cols=103  Identities=43%  Similarity=0.798  Sum_probs=87.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|++..+.                       ..+.++++.++....+.+++..+.+.+
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l   61 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFS-----------------------NQYKATIGADFLTKEVMVDDRLVTMQI   61 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------SSCCCCCSEEEEEEEEESSSCEEEEEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCC-----------------------CCCCCcccceEEEEEEEECCEEEEEEE
Confidence            346799999999999999999999995543                       334556677777777778888889999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        62 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~  107 (207)
T 1vg8_A           62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL  107 (207)
T ss_dssp             EEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             EeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988888877764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.94  E-value=3.5e-25  Score=187.67  Aligned_cols=175  Identities=30%  Similarity=0.510  Sum_probs=134.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...+||+++|++|||||||+++|.+..+...+                       .+|++.++.. .+.+++..+.+.+|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~~~-~~~~~~~~~~l~i~   78 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY-----------------------VPTVFENYIA-DIEVDGKQVELALW   78 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC-----------------------CCSSCCCCEE-EEEETTEEEEEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCccc-----------------------CCcccceEEE-EEEECCEEEEEEEE
Confidence            45799999999999999999999996654443                       3344444432 34567778899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhH-HHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||||++.+..++..+++.+|++++|||++++.+|+.+ ..|+..+...                                
T Consensus        79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------  126 (201)
T 2gco_A           79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--------------------------------  126 (201)
T ss_dssp             CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--------------------------------
T ss_pred             ECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--------------------------------
Confidence            9999999999999999999999999999999999988 6788877643                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                ..++|+++|+||+|+.....                                                  
T Consensus       127 ----------~~~~piilv~nK~Dl~~~~~--------------------------------------------------  146 (201)
T 2gco_A          127 ----------CPNVPIILVGNKKDLRQDEH--------------------------------------------------  146 (201)
T ss_dssp             ----------STTCCEEEEEECGGGTTCHH--------------------------------------------------
T ss_pred             ----------CCCCCEEEEEecHHhhcCcc--------------------------------------------------
Confidence                      13789999999999743110                                                  


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~  328 (355)
                                               ..+.+...                 ..+.+..+++..+++..++ +++++||++|
T Consensus       147 -------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g  184 (201)
T 2gco_A          147 -------------------------TRRELAKM-----------------KQEPVRSEEGRDMANRISAFGYLECSAKTK  184 (201)
T ss_dssp             -------------------------HHHHHHTT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             -------------------------chhhhccc-----------------ccCcCCHHHHHHHHHhCCCcEEEEeeCCCC
Confidence                                     00011110                 1234556677778888787 9999999999


Q ss_pred             CCHHHHHHHHHHHcC
Q psy15725        329 YNVKQLFRRVAAALP  343 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~  343 (355)
                      .||+++|++|.+.+.
T Consensus       185 ~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          185 EGVREVFEMATRAGL  199 (201)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.93  E-value=3e-25  Score=186.76  Aligned_cols=168  Identities=31%  Similarity=0.437  Sum_probs=123.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|.+...                     .+... .++++.++....+.+++..+.+.+||
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D   62 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHD---------------------SMDSD-XEVLGEDTYERTLMVDGESATIILLD   62 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSC---------------------CC-----GGGCTTEEEEEEEETTEEEEEEEEC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcC---------------------CcCcc-ccccceeEEEEEEEECCeEEEEEEEE
Confidence            469999999999999999999997331                     11221 23345566667777888888999999


Q ss_pred             cCCccc-ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         92 TAGQER-FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        92 ~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |+|+.. +..++..+++.+|++++|||++++++|+.+..|+..+....                                
T Consensus        63 t~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~--------------------------------  110 (192)
T 2cjw_A           63 MWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR--------------------------------  110 (192)
T ss_dssp             CCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT--------------------------------
T ss_pred             eccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--------------------------------
Confidence            999876 45566677778888888888888888877776655443210                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (192)
T 2cjw_A          111 --------------------------------------------------------------------------------  110 (192)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+...+.+...++..++...++++++|||++|.|
T Consensus       111 --------------------------------~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~  158 (192)
T 2cjw_A          111 --------------------------------QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN  158 (192)
T ss_dssp             --------------------------------TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred             --------------------------------CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCC
Confidence                                            013577788888888765566666666677777788999999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q psy15725        331 VKQLFRRVAAALPGM  345 (355)
Q Consensus       331 v~~l~~~l~~~i~~~  345 (355)
                      |+++|++|.+.+...
T Consensus       159 v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          159 VKELFEGIVRQVRLR  173 (192)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.93  E-value=4e-26  Score=194.10  Aligned_cols=171  Identities=27%  Similarity=0.476  Sum_probs=102.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc--EEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR--TVRLQ   88 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~   88 (355)
                      .+.+||+++|++|||||||+++|.+..                     ..+...+.+|++.++....+.+++.  .+.+.
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~---------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~   76 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKG---------------------SKFLKDYAMTSGVEVVVAPVTIPDTTVSVELF   76 (208)
T ss_dssp             EEEEEEEEC-------------------------------------------------------CEEEECTTSSEEEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCC---------------------CcccCCCCCccceEEEEEEEEECCcccEEEEE
Confidence            356999999999999999999999851                     0233344566666677777777776  88999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+.....                             
T Consensus        77 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------------------------  127 (208)
T 2yc2_C           77 LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARP-----------------------------  127 (208)
T ss_dssp             EEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCS-----------------------------
T ss_pred             EEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhc-----------------------------
Confidence            999999999988888889999999999999998888888888777653200                             


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (208)
T 2yc2_C          128 --------------------------------------------------------------------------------  127 (208)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC-cccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                                                       ....++|+++|+||+|+.+ .+.+..+++..+++..+++++++||++
T Consensus       128 ---------------------------------~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  174 (208)
T 2yc2_C          128 ---------------------------------DRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANP  174 (208)
T ss_dssp             ---------------------------------CTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC--
T ss_pred             ---------------------------------ccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCC
Confidence                                             0014678888888888766 566777788888888889999999999


Q ss_pred             -CCCHHHHHHHHHHHcCC
Q psy15725        328 -GYNVKQLFRRVAAALPG  344 (355)
Q Consensus       328 -~~gv~~l~~~l~~~i~~  344 (355)
                       |.||+++|++|.+.+.+
T Consensus       175 ~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          175 PGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             -----CHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence             99999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.93  E-value=3.4e-25  Score=185.79  Aligned_cols=171  Identities=30%  Similarity=0.501  Sum_probs=120.1

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ++.+.+||+++|++|||||||+++|+++.+...                       +.++.+.. ....+..++..+.+.
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~-~~~~~~~~~~~~~~~   72 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDE-----------------------YDPTIEDS-YRKQVVIDGETCLLD   72 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSC-----------------------CCTTCCEE-EEEEEEETTEEEEEE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccc-----------------------cCCccceE-EEEEEEECCEEEEEE
Confidence            456789999999999999999999998654333                       23333322 234555677778899


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||||++++...+..+++.+|++++|||++++.+++.+..|+..+....                              
T Consensus        73 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------------------  122 (190)
T 3con_A           73 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK------------------------------  122 (190)
T ss_dssp             EEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH------------------------------
T ss_pred             EEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh------------------------------
Confidence            99999999999999889999999999999999888888777766653210                              


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (190)
T 3con_A          123 --------------------------------------------------------------------------------  122 (190)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                        ...++|+++|+||+|+.+ +.+..++...+++..+++++++||++|
T Consensus       123 ----------------------------------~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~  167 (190)
T 3con_A          123 ----------------------------------DSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTR  167 (190)
T ss_dssp             ----------------------------------TCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred             ----------------------------------CCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence                                              003567777777777754 445566677777777889999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~~~  348 (355)
                      .|++++|++|.+.+.+.+.+
T Consensus       168 ~gi~~l~~~l~~~~~~~~~~  187 (190)
T 3con_A          168 QGVEDAFYTLVREIRQYRMK  187 (190)
T ss_dssp             TTHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHh
Confidence            99999999999998765443

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2.5e-25  Score=187.91  Aligned_cols=170  Identities=30%  Similarity=0.490  Sum_probs=130.1

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      +..+.+||+++|++|||||||+++|+++.+...+                       .++++..+ ......++....+.
T Consensus         4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~~~   59 (199)
T 2gf0_A            4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY-----------------------IPTIEDTY-RQVISCDKSVCTLQ   59 (199)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT-----------------------SCCCCEEE-EEEEEETTEEEEEE
T ss_pred             cCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc-----------------------cCccccce-eEEEEECCEEEEEE
Confidence            3456799999999999999999999996554433                       33444332 33445677788999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||||++.+..++..+++.+|++++|||++++.+|+.+..|+..+.....                             
T Consensus        60 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------------------------  110 (199)
T 2gf0_A           60 ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKG-----------------------------  110 (199)
T ss_dssp             EEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHS-----------------------------
T ss_pred             EEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhc-----------------------------
Confidence            999999999999998899999999999999998888887777665532200                             


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (199)
T 2gf0_A          111 --------------------------------------------------------------------------------  110 (199)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                       . ..++|+++|+||+|+.. +.+...++..+++..+++++++||++|
T Consensus       111 ---------------------------------~-~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (199)
T 2gf0_A          111 ---------------------------------S-VEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMN  155 (199)
T ss_dssp             ---------------------------------C-GGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             ---------------------------------C-CCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCC
Confidence                                             0 02467777777777653 445566666777777889999999999


Q ss_pred             CCHHHHHHHHHHHcCCCC
Q psy15725        329 YNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~~~  346 (355)
                      .||+++|++|.+.+..++
T Consensus       156 ~gi~~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          156 YNVKELFQELLTLETRRN  173 (199)
T ss_dssp             BSHHHHHHHHHHHCSSSC
T ss_pred             CCHHHHHHHHHHHHhhhh
Confidence            999999999999997664

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.93  E-value=4.6e-26  Score=189.55  Aligned_cols=174  Identities=32%  Similarity=0.511  Sum_probs=122.2

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||++++..+.+...+.|++                       +..+ ...+..++..+.+.+|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~-----------------------~~~~-~~~~~~~~~~~~~~i~   61 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-----------------------FDNF-SANVVVNGATVNLGLW   61 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------C-BCCCC-------CEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCee-----------------------eeeE-EEEEEECCEEEEEEEE
Confidence            456999999999999999999999976655544433                       3222 1223345666788999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||||++++...+..+++.+|++++|||++++.+|+.+. .|+..+...                                
T Consensus        62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------  109 (182)
T 3bwd_D           62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHY--------------------------------  109 (182)
T ss_dssp             CCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--------------------------------
T ss_pred             ECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--------------------------------
Confidence            99999999999999999999999999999999999987 698887643                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                ..++|+++|+||+|+.+.+...                                                
T Consensus       110 ----------~~~~piilv~nK~Dl~~~~~~~------------------------------------------------  131 (182)
T 3bwd_D          110 ----------APGVPIVLVGTKLDLRDDKQFF------------------------------------------------  131 (182)
T ss_dssp             ----------CTTCCEEEEEECHHHHTCHHHH------------------------------------------------
T ss_pred             ----------CCCCCEEEEEechhhhcCcccc------------------------------------------------
Confidence                      1278999999999973311000                                                


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~  328 (355)
                                                    ...                .....+..+++..+++..++ +++++||++|
T Consensus       132 ------------------------------~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (182)
T 3bwd_D          132 ------------------------------IDH----------------PGAVPITTVQGEELKKLIGAPAYIECSSKSQ  165 (182)
T ss_dssp             ------------------------------HHC------------------CCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             ------------------------------ccc----------------ccCCCCCHHHHHHHHHHcCCCEEEEEECCCC
Confidence                                          000                00233455666777777776 9999999999


Q ss_pred             CCHHHHHHHHHHHcCC
Q psy15725        329 YNVKQLFRRVAAALPG  344 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~  344 (355)
                      .||+++|++|.+.+..
T Consensus       166 ~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          166 ENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999998865

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.93  E-value=3.2e-25  Score=188.38  Aligned_cols=176  Identities=28%  Similarity=0.495  Sum_probs=132.8

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ...+.+||+++|++|||||||+++|+.+.+...+.                       ++++ +.....+.+++..+.+.
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~-----------------------~t~~-~~~~~~~~~~~~~~~l~   81 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-----------------------PTVF-DNYSANVMVDGKPVNLG   81 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CC-----------------------CCSE-EEEEEEEECC-CEEEEE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcC-----------------------Ceec-ceeEEEEEECCEEEEEE
Confidence            34678999999999999999999999966544433                       3333 33445556777888999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      +|||||++.+...+..+++.+|++++|||++++.+|+.+. .|+..+....                             
T Consensus        82 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------------------  132 (204)
T 4gzl_A           82 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----------------------------  132 (204)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----------------------------
T ss_pred             EEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----------------------------
Confidence            9999999999999999999999999999999999999986 7888886531                             


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                   .++|+++|+||+|+.+.+.                                                
T Consensus       133 -------------~~~piilv~nK~Dl~~~~~------------------------------------------------  151 (204)
T 4gzl_A          133 -------------PNTPIILVGTKLDLRDDKD------------------------------------------------  151 (204)
T ss_dssp             -------------SSCCEEEEEECHHHHTCHH------------------------------------------------
T ss_pred             -------------CCCCEEEEEechhhccchh------------------------------------------------
Confidence                         3789999999999743110                                                


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAK  326 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~  326 (355)
                                                 ..+.+...                 ..+.+...++..+++..++ +++++||+
T Consensus       152 ---------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~SA~  187 (204)
T 4gzl_A          152 ---------------------------TIEKLKEK-----------------KLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
T ss_dssp             ---------------------------HHHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             ---------------------------hhhhhhcc-----------------ccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence                                       00001110                 1234556677788888775 79999999


Q ss_pred             CCCCHHHHHHHHHHHc
Q psy15725        327 AGYNVKQLFRRVAAAL  342 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i  342 (355)
                      +|.||+++|++|.+.+
T Consensus       188 ~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          188 TQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TCTTHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.93  E-value=8.9e-25  Score=178.47  Aligned_cols=164  Identities=29%  Similarity=0.509  Sum_probs=126.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++++.+..+...+                       .++.+.. ....+..++..+.+.+||
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------------------~~~~~~~-~~~~~~~~~~~~~~~~~D   57 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEC-----------------------DPTIEDS-YRKQVVIDGETCLLDILD   57 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCC-----------------------CTTCCEE-EEEEEEETTEEEEEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCcccc-----------------------CCccceE-EEEEEEECCEEEEEEEEE
Confidence            4689999999999999999999986544433                       3333322 234455667778899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||++++...+..+++.+|++++|||++++.+++.+..|+..+....                                 
T Consensus        58 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~---------------------------------  104 (166)
T 2ce2_X           58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---------------------------------  104 (166)
T ss_dssp             CCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred             CCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---------------------------------
Confidence            99999988888888889999999999988888877777766553210                                 


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (166)
T 2ce2_X          105 --------------------------------------------------------------------------------  104 (166)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     ...++|+++|+||+|+.+ +.+...+...+++..+++++++||++|.|+
T Consensus       105 -------------------------------~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  152 (166)
T 2ce2_X          105 -------------------------------DSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGV  152 (166)
T ss_dssp             -------------------------------TCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTH
T ss_pred             -------------------------------CCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence                                           003567888888888754 445566677777777889999999999999


Q ss_pred             HHHHHHHHHHcCC
Q psy15725        332 KQLFRRVAAALPG  344 (355)
Q Consensus       332 ~~l~~~l~~~i~~  344 (355)
                      +++|++|.+.+.+
T Consensus       153 ~~l~~~l~~~~~~  165 (166)
T 2ce2_X          153 EDAFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.93  E-value=2.1e-25  Score=182.41  Aligned_cols=94  Identities=19%  Similarity=0.456  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++++.++.+..                        +.||++...  ..  ++.....+.+||||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~------------------------~~~t~~~~~--~~--~~~~~~~~~i~Dt~   52 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT------------------------TIPTIGFNV--ET--VEYKNISFTVWDVG   52 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC------------------------CCCCSSCCE--EE--EECSSCEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc------------------------ccCcCceeE--EE--EEECCEEEEEEEcC
Confidence            589999999999999999999865432                        133444222  22  22344789999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++.+...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus        53 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~   94 (164)
T 1r8s_A           53 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML   94 (164)
T ss_dssp             CCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred             CChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888877764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.92  E-value=3.8e-25  Score=185.37  Aligned_cols=98  Identities=23%  Similarity=0.476  Sum_probs=79.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+|+|++|||||||+++|+++.+...                       +.+|++.++..    ++.....+.+|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------~~~t~~~~~~~----~~~~~~~~~l~   72 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED-----------------------MIPTVGFNMRK----ITKGNVTIKLW   72 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------------------CCCCCSEEEEE----EEETTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCc-----------------------cCCCCceeEEE----EEeCCEEEEEE
Confidence            4579999999999999999999999655433                       34455554432    22345789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||||++++...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus        73 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~  117 (188)
T 1zd9_A           73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL  117 (188)
T ss_dssp             EECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888877764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.92  E-value=2.6e-24  Score=181.92  Aligned_cols=98  Identities=20%  Similarity=0.310  Sum_probs=73.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||++++.++.+..                        +.||++...  ..+.+++  ..+.+|
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~------------------------~~~t~~~~~--~~~~~~~--~~l~i~   74 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ------------------------HVPTLHPTS--EELTIAG--MTFTTF   74 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------------------------------CCCCCSC--EEEEETT--EEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCc------------------------cCCCCCcee--EEEEECC--EEEEEE
Confidence            456899999999999999999998855421                        223333332  2333444  789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      ||||++.+..++..+++.+|++++|||++++++|+.+..|+.++..
T Consensus        75 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~  120 (198)
T 1f6b_A           75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT  120 (198)
T ss_dssp             EECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred             ECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999888753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.92  E-value=1.6e-24  Score=178.32  Aligned_cols=96  Identities=20%  Similarity=0.403  Sum_probs=77.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|.++.+..                        +.||++...  ..+.++  ...+.+||
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------------~~~t~~~~~--~~~~~~--~~~~~~~D   57 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT------------------------TIPTIGFNV--ETVTYK--NLKFQVWD   57 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC------------------------CCCCSSEEE--EEEEET--TEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC------------------------cCCcCccce--EEEEEC--CEEEEEEE
Confidence            46899999999999999999999865422                        234444332  223333  47899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||++.+...+..+++.+|++++|||++++.+|.....|+..+.
T Consensus        58 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  101 (171)
T 1upt_A           58 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAML  101 (171)
T ss_dssp             ECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHH
T ss_pred             CCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888777664

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.92  E-value=7.9e-24  Score=177.73  Aligned_cols=98  Identities=22%  Similarity=0.361  Sum_probs=78.1

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||++++.++.+..                        +.+|++..  ...+.+++  ..+.+|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~------------------------~~~t~~~~--~~~~~~~~--~~~~i~   72 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT------------------------LQPTWHPT--SEELAIGN--IKFTTF   72 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC------------------------CCCCCSCE--EEEEEETT--EEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc------------------------cccCCCCC--eEEEEECC--EEEEEE
Confidence            456899999999999999999999865432                        23344433  23334444  789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      ||||++.+..++..+++.+|++++|||++++++|+.+..|+..+..
T Consensus        73 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~  118 (190)
T 1m2o_B           73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN  118 (190)
T ss_dssp             ECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHT
T ss_pred             ECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999888753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.92  E-value=9.3e-25  Score=183.73  Aligned_cols=97  Identities=18%  Similarity=0.451  Sum_probs=73.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||++++..+.+..                        +.||++...  ..+..  ....+.+|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~------------------------~~~t~~~~~--~~~~~--~~~~~~i~   78 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT------------------------TIPTIGFNV--ETVEY--KNICFTVW   78 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE------------------------EEEETTEEE--EEEEE--TTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc------------------------cCCcCceeE--EEEEE--CCEEEEEE
Confidence            467999999999999999999998855421                        234545332  22222  44789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||||++.+...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus        79 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~  123 (192)
T 2b6h_A           79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKML  123 (192)
T ss_dssp             ECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999888887764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.92  E-value=1.2e-25  Score=190.28  Aligned_cols=157  Identities=41%  Similarity=0.715  Sum_probs=126.6

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|++..                       +...+.++++.++....+.+++..+.+.+|
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   87 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDT-----------------------YTESYISTIGVDFKIRTIELDGKTIKLQIW   87 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCC-----------------------CCCHHHHHHCCSEEEEEEEETTEEEEEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCC-----------------------CCCCcCCcccceEEEEEEEECCEEEEEEEE
Confidence            457999999999999999999999844                       344455667777778888888888999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+...                                 
T Consensus        88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---------------------------------  134 (199)
T 3l0i_B           88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY---------------------------------  134 (199)
T ss_dssp             CCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSC---------------------------------
T ss_pred             ECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---------------------------------
Confidence            99999999999999999999999999999999999999999988643                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                              ...++|+++|+||+|+.+.+.+...+...++...+++++++|+.++.++++++
T Consensus       135 --------~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~  187 (199)
T 3l0i_B          135 --------ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  187 (199)
T ss_dssp             --------C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHH
T ss_pred             --------ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence                    12479999999999998877777788888889999999999999998887643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.4e-24  Score=181.70  Aligned_cols=97  Identities=24%  Similarity=0.450  Sum_probs=73.9

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|.++.+. .                       +.||++...  ..+.++  ...+.+|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~-----------------------~~~t~~~~~--~~~~~~--~~~~~i~   65 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-H-----------------------TSPTIGSNV--EEIVIN--NTRFLMW   65 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-E-----------------------EECCSCSSC--EEEEET--TEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-c-----------------------CcCCCccce--EEEEEC--CEEEEEE
Confidence            35799999999999999999999985543 2                       234444332  222333  3789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||||++++...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus        66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  110 (187)
T 1zj6_A           66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKML  110 (187)
T ss_dssp             ECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888887764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.92  E-value=9.8e-25  Score=181.80  Aligned_cols=98  Identities=22%  Similarity=0.515  Sum_probs=78.0

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      +.+.+||+++|++|||||||++++.+..+.                        .+.||++...  ..+.++  ...+.+
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~------------------------~~~~t~g~~~--~~~~~~--~~~l~i   64 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS------------------------HITPTQGFNI--KSVQSQ--GFKLNV   64 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCE------------------------EEEEETTEEE--EEEEET--TEEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCCCC------------------------cccCcCCeEE--EEEEEC--CEEEEE
Confidence            346799999999999999999999885321                        2345555432  233333  478999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||||++.+...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus        65 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  110 (181)
T 1fzq_A           65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELL  110 (181)
T ss_dssp             EECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHT
T ss_pred             EECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888877653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.91  E-value=1.7e-23  Score=174.84  Aligned_cols=97  Identities=24%  Similarity=0.481  Sum_probs=77.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||++++.++. ..                       .+.||++...  ..+.++  ...+.+|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~-----------------------~~~~t~~~~~--~~~~~~--~~~~~~~   67 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VD-----------------------TISPTLGFNI--KTLEHR--GFKLNIW   67 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CS-----------------------SCCCCSSEEE--EEEEET--TEEEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CC-----------------------cccccCccce--EEEEEC--CEEEEEE
Confidence            467999999999999999999999854 22                       2344545332  233333  4789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||||++++...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  112 (186)
T 1ksh_A           68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLL  112 (186)
T ss_dssp             EECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888877764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.91  E-value=7.1e-25  Score=183.13  Aligned_cols=103  Identities=27%  Similarity=0.551  Sum_probs=73.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee---cCcEEEEEE
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTVRLQL   89 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i   89 (355)
                      ++||+++|++|||||||+++|.+..                     ..+...+.+|++.++....+.+   ++..+.+.+
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~---------------------~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i   60 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTK---------------------KSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNV   60 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC--------------------------------CSEEEEEEEC---------CEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCC---------------------CccCCCcceeccEEeEEeeeccccCCCCceEEEE
Confidence            5899999999999999999999842                     1122334566677766655543   235678999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCc-chhhhHHHHHHHHhh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNA-NSFHQTSKWIDDVRT  136 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~  136 (355)
                      |||+|+++|..+++.+++.+|++++|||++++ .+|+.+..|+.++..
T Consensus        61 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~  108 (184)
T 2zej_A           61 WDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKA  108 (184)
T ss_dssp             EEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHH
T ss_pred             EecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHh
Confidence            99999999999998889999999999999987 478888888777653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=175.20  Aligned_cols=100  Identities=19%  Similarity=0.356  Sum_probs=77.0

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|.+...                      +...+.+|++..  ...+.++  ...+.+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~----------------------~~~~~~~t~~~~--~~~~~~~--~~~~~l   71 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNA----------------------QSQNILPTIGFS--IEKFKSS--SLSFTV   71 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGG----------------------CCSSCCCCSSEE--EEEEECS--SCEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCC----------------------CCCCcCCcccee--EEEEEEC--CEEEEE
Confidence            45679999999999999999999998541                      122234455533  3333333  368999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+.
T Consensus        72 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  117 (190)
T 2h57_A           72 FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLL  117 (190)
T ss_dssp             EEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988888877764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.91  E-value=2.3e-24  Score=180.69  Aligned_cols=97  Identities=23%  Similarity=0.427  Sum_probs=77.2

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||++++..+.+..                        +.||++....  .+..+  ...+.+|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------~~~t~~~~~~--~~~~~--~~~~~~~   71 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT------------------------TVPTVGVNLE--TLQYK--NISFEVW   71 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE------------------------ECSSTTCCEE--EEEET--TEEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC------------------------cCCCCceEEE--EEEEC--CEEEEEE
Confidence            357999999999999999999998754321                        2344443322  22232  4789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||||++.+...+..+++.+|++++|||++++++|+.+..|+..+.
T Consensus        72 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  116 (189)
T 2x77_A           72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL  116 (189)
T ss_dssp             EECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHH
T ss_pred             ECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888877764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.91  E-value=5.4e-24  Score=179.57  Aligned_cols=102  Identities=17%  Similarity=0.231  Sum_probs=70.8

Q ss_pred             CCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee--e-cCc
Q psy15725          7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY--L-EDR   83 (355)
Q Consensus         7 ~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~-~~~   83 (355)
                      ..++.+.+||+++|++|||||||++++.+... .                         .++++.++......  + ++.
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~-------------------------~~~~~~~~~~~~~~~~~~~~~   67 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-P-------------------------NETLFLESTNKIYKDDISNSS   67 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCC-G-------------------------GGGGGCCCCCSCEEEEECCTT
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCC-C-------------------------cceeeeccccceeeeeccCCC
Confidence            34556789999999999999999998776321 1                         12333333333332  2 256


Q ss_pred             EEEEEEEecCCcccccccc---cccccCccEEEEEEECCCc--chhhhHHHHHHHH
Q psy15725         84 TVRLQLWDTAGQERFRSLI---PSYIRDSTVAVVVYDITNA--NSFHQTSKWIDDV  134 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~---~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~~  134 (355)
                      .+.+.+|||+|++.|....   ..+++.+|++++|||++++  +++..+..|+.++
T Consensus        68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~  123 (196)
T 3llu_A           68 FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKA  123 (196)
T ss_dssp             SCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHH
T ss_pred             eeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHH
Confidence            6789999999999988876   7999999999999999997  5555555665554

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.91  E-value=8.6e-23  Score=172.62  Aligned_cols=100  Identities=34%  Similarity=0.800  Sum_probs=81.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||++++.+..+..                       .+.++++.++....+.+++..+.+.+||
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-----------------------~~~~t~~~~~~~~~i~~~g~~~~~~i~D   60 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------------ESKSTIGVEFATRSIQVDGKTIKAQIWD   60 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------CCCSCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------CCCCccceeEEEEEEEECCEEEEEEEEE
Confidence            46899999999999999999999955433                       3445666677777788888889999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      ++|++.+...+..+++.+|++++|||+.+..+|+.+..|+..+
T Consensus        61 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~  103 (199)
T 2f9l_A           61 TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL  103 (199)
T ss_dssp             CSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             CCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            9999999888888888899999999998888887776676554

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.90  E-value=2.2e-22  Score=169.03  Aligned_cols=102  Identities=33%  Similarity=0.777  Sum_probs=85.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...++|+++|++|||||||++++.+..++.                       .+.+|++.++....+.+++..+.+.+|
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-----------------------~~~~t~~~~~~~~~i~~~g~~~~~~i~   83 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------------ESKSTIGVEFATRSIQVDGKTIKAQIW   83 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCC-----------------------SCCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------CCCCccceEEEEEEEEECCEEEEEEEE
Confidence            456999999999999999999999955433                       345666777778888888888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |++|++++...+..+++.++++++|||..+..+|+++..|+..+.
T Consensus        84 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  128 (191)
T 1oix_A           84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR  128 (191)
T ss_dssp             EECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             ECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            999999998888888888999999999998888887777766553

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.90  E-value=8.4e-23  Score=186.29  Aligned_cols=176  Identities=28%  Similarity=0.487  Sum_probs=135.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||++++.++.+...+                       .+|++. .....+.+++..+.+.+||
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~-----------------------~~t~~~-~~~~~~~~~~~~~~~~l~D  209 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----------------------IPTVFD-NYSANVMVDGKPVNLGLWD  209 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSC-----------------------CCCSEE-EEEEEEEETTEEEEEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCccc-----------------------CCcccc-eeEEEEEECCEEEEEEEEe
Confidence            3589999999999999999999986554443                       334442 3344556778888999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |||++.+...+..+++.+|++++|||++++.+|+.+. .|+..+....                                
T Consensus       210 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------  257 (332)
T 2wkq_A          210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--------------------------------  257 (332)
T ss_dssp             ECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--------------------------------
T ss_pred             CCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--------------------------------
Confidence            9999999999999999999999999999999999886 7888876431                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                .++|+++|+||+|+.+...                                                   
T Consensus       258 ----------~~~p~ilv~nK~Dl~~~~~---------------------------------------------------  276 (332)
T 2wkq_A          258 ----------PNTPIILVGTKLDLRDDKD---------------------------------------------------  276 (332)
T ss_dssp             ----------TTSCEEEEEECHHHHTCHH---------------------------------------------------
T ss_pred             ----------CCCcEEEEEEchhcccccc---------------------------------------------------
Confidence                      2789999999999632110                                                   


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGY  329 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~  329 (355)
                                              ..+.+...                 ..+.+...++..+++..++ ++++|||++|.
T Consensus       277 ------------------------~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  315 (332)
T 2wkq_A          277 ------------------------TIEKLKEK-----------------KLTPITYPQGLAMAKEIGAVKYLECSALTQR  315 (332)
T ss_dssp             ------------------------HHHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             ------------------------hhhhcccc-----------------ccccccHHHHHHHHHHcCCcEEEEecCCCCc
Confidence                                    00011110                 1244566777788888886 99999999999


Q ss_pred             CHHHHHHHHHHHcCCC
Q psy15725        330 NVKQLFRRVAAALPGM  345 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~  345 (355)
                      ||+++|++|.+.+..+
T Consensus       316 gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          316 GLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             THHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999988654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.89  E-value=3.1e-23  Score=182.16  Aligned_cols=89  Identities=19%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             CCcEEEEEEeCCCc--ccHHHHHHHHHHHHhh-cCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh-cCcEEEEecCCCC
Q psy15725        253 DSTVAVVVYDITNA--NSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAG  328 (355)
Q Consensus       253 ~~~~vi~v~d~~~~--~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~SA~~~  328 (355)
                      ++|++++|||++++  .+++.+..|+..+... ...++|+++|+||+|+.+.+.+  .+...+++. .+++++++||++|
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g  239 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSN  239 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTT
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCC
Confidence            89999999999998  8999999999888664 2368999999999999655544  455566655 4789999999999


Q ss_pred             CCHHHHHHHHHHHcC
Q psy15725        329 YNVKQLFRRVAAALP  343 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~  343 (355)
                      .||+++|++|.+.+.
T Consensus       240 ~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          240 VNVDLAFSTLVQLID  254 (255)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.89  E-value=5.5e-23  Score=175.74  Aligned_cols=123  Identities=18%  Similarity=0.240  Sum_probs=86.9

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc-EEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TVRLQ   88 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~   88 (355)
                      ..+.+||+++|++|||||||+++|+++.+...+.+                        +..++..  +.+++. ...+.
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~------------------------~~~~~~~--~~~~~~~~~~~~   57 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS------------------------ITDSSAI--YKVNNNRGNSLT   57 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC------------------------CSCEEEE--EECSSTTCCEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC------------------------cceeeEE--EEecCCCccEEE
Confidence            34679999999999999999999999665444322                        1223222  334433 57899


Q ss_pred             EEecCCcccccc-cccccccCccEEEEEEECCCcc-hhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         89 LWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNAN-SFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        89 i~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      +|||||++.+.. ++..+++.+|++++|||+++.. ++..... |...+....                           
T Consensus        58 i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------------------  110 (214)
T 2fh5_B           58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM---------------------------  110 (214)
T ss_dssp             EEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred             EEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh---------------------------
Confidence            999999999987 7888899999999999999853 4555444 544443210                           


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcc
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  197 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  197 (355)
                                  ....++|+++|+||+|+...
T Consensus       111 ------------~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B          111 ------------ALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             ------------TSTTCCEEEEEEECTTSTTC
T ss_pred             ------------hcccCCCEEEEEECCCCCCc
Confidence                        11247999999999998653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.89  E-value=6.1e-23  Score=186.71  Aligned_cols=96  Identities=19%  Similarity=0.458  Sum_probs=72.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+|+|++|||||||+++|.+..+...                        .||++..+..    ++.....+.+||
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~------------------------~pT~~~~~~~----~~~~~~~l~i~D  215 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT------------------------IPTIGFNVET----VEYKNISFTVWD  215 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE------------------------EEETTEEEEE----EEETTEEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc------------------------ccccceEEEE----EecCcEEEEEEE
Confidence            467999999999999999999988553221                        2455544332    233457899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |||++.|..++..+++.+|++|+|||++++.+|..+..|+..+.
T Consensus       216 t~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~  259 (329)
T 3o47_A          216 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML  259 (329)
T ss_dssp             CC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHH
T ss_pred             CCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998887766654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.88  E-value=1.5e-22  Score=168.43  Aligned_cols=154  Identities=21%  Similarity=0.311  Sum_probs=112.5

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ...+.+||+++|++|||||||+++|.++.+ .                       .+.+|++...  ..+.++  ...+.
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~-----------------------~~~~t~~~~~--~~~~~~--~~~~~   68 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-V-----------------------HTSPTIGSNV--EEIVIN--NTRFL   68 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-E-----------------------EEECCSSSSC--EEEEET--TEEEE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-C-----------------------ccCCcCceee--EEEEEC--CEEEE
Confidence            345679999999999999999999998654 1                       1234444332  223333  37899


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||||++++...+..+++.+|++++|||++++++|+.+..|+..+...                               
T Consensus        69 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~-------------------------------  117 (181)
T 2h17_A           69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH-------------------------------  117 (181)
T ss_dssp             EEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTC-------------------------------
T ss_pred             EEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC-------------------------------
Confidence            9999999999999999999999999999999999999998888877532                               


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                               ....++|+++|+||+|+.+...   +............+.+++++|+.++.+++++
T Consensus       118 ---------~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  173 (181)
T 2h17_A          118 ---------EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  173 (181)
T ss_dssp             ---------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             ---------hhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence                     1124799999999999965321   1111112222345678999999999887654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.88  E-value=2.1e-22  Score=165.07  Aligned_cols=83  Identities=18%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      ++++++|+|+++.   +....|+..+.+   .++|+++|+||+|+...+.+.. +...+++..+++++++||++|.||++
T Consensus        82 ~~~~i~v~D~~~~---~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~  154 (165)
T 2wji_A           82 PDLVVNIVDATAL---ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEE  154 (165)
T ss_dssp             CSEEEEEEETTCH---HHHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred             CCEEEEEecCCch---hHhHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence            5667777777653   233346555554   4788999999999754444432 34566667788999999999999999


Q ss_pred             HHHHHHHHcC
Q psy15725        334 LFRRVAAALP  343 (355)
Q Consensus       334 l~~~l~~~i~  343 (355)
                      +|++|.+.+.
T Consensus       155 l~~~l~~~~~  164 (165)
T 2wji_A          155 LKKAISIAVK  164 (165)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999998763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.87  E-value=2.1e-21  Score=160.64  Aligned_cols=86  Identities=16%  Similarity=0.251  Sum_probs=65.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.++|+++|++|||||||+++|.+..+...+.+                       +++.++....+.+++  ..+.+|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--~~~~l~   60 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAG-----------------------GITQHIGAYQVTVND--KKITFL   60 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCC-----------------------SSSTTCCCCEEEETT--EEEEES
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCC-----------------------ceeEeeeEEEEEeCC--ceEEEE
Confidence            3568999999999999999999999665443322                       222233333344444  467899


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      ||||++.+...+..++..+|++++|||++++
T Consensus        61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   91 (178)
T 2lkc_A           61 DTPGHEAFTTMRARGAQVTDIVILVVAADDG   91 (178)
T ss_dssp             CCCSSSSSSCSCCSSCCCCCEEEEEEETTCC
T ss_pred             ECCCCHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            9999999999999999999999999998874

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.79  E-value=3.7e-24  Score=181.68  Aligned_cols=159  Identities=30%  Similarity=0.504  Sum_probs=126.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||+++|.++.+...+.++                       ++.. ....+..++..+.+.+|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-----------------------~~~~-~~~~~~~~~~~~~l~i~   83 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-----------------------VFDN-YSANVMVDGKPVNLGLW   83 (204)
Confidence            46799999999999999999999986655444333                       2222 23334455667789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHH-HHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||||++++...+..+++.+|++++|||++++.+|+.+. .|+..+...                                
T Consensus        84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--------------------------------  131 (204)
T 3th5_A           84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH--------------------------------  131 (204)
Confidence            99999999999999999999999999999999999886 787776532                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCccc------------ceehhhhhhhhhccCe-EEEEeeeeeccccceEEEEEE
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKR------------QVSTEEGERKAKELNV-MFIETSAKAGYNVKQVRLQLW  235 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~------------~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~i~~~i~  235 (355)
                                ..++|+++|+||+|+.+..            .+...+...++...+. +++++|+.++.+++.++..+.
T Consensus       132 ----------~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~  200 (204)
T 3th5_A          132 ----------CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI  200 (204)
Confidence                      1278999999999996543            4555666777777777 899999999999988776654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=7.8e-22  Score=164.08  Aligned_cols=150  Identities=24%  Similarity=0.405  Sum_probs=108.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||++++.++.+                        ..+.+|++...  ..+.++  ...+.+|
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~------------------------~~~~~t~~~~~--~~~~~~--~~~~~i~   67 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV------------------------VTTKPTIGFNV--ETLSYK--NLKLNVW   67 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE------------------------EEECSSTTCCE--EEEEET--TEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc------------------------CccCCcCccce--EEEEEC--CEEEEEE
Confidence            4679999999999999999999987543                        11234555332  223333  3789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||++.+...+..+++.+|++++|||++++.+|+.+..|+..+...                                 
T Consensus        68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---------------------------------  114 (183)
T 1moz_A           68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE---------------------------------  114 (183)
T ss_dssp             EEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTS---------------------------------
T ss_pred             ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcC---------------------------------
Confidence            99999999999999999999999999999999999998888877532                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhh-----hhhccCeEEEEeeeeeccccceE
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGER-----KAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~-----~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                             ....++|+++|+||+|+.+..  ...+...     .....+.+++++|+.++.+++++
T Consensus       115 -------~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (183)
T 1moz_A          115 -------EELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEGITEG  170 (183)
T ss_dssp             -------STTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             -------hhhCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence                   113479999999999986532  1111111     12234568999999999887753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.87  E-value=3e-22  Score=178.96  Aligned_cols=90  Identities=12%  Similarity=0.134  Sum_probs=65.9

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|+.|||||||++++.++..+..                    ...+.||++.++...     +..+.+++|||+|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~--------------------~~~~~~Tig~~~~~v-----~~~v~LqIWDTAG   55 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLD--------------------TLYLESTSNPSLEHF-----STLIDLAVMELPG   55 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGG--------------------GTTCCCCCSCCCEEE-----CSSSCEEEEECCS
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCc--------------------cceecCeeeeeeEEE-----ccEEEEEEEECCC
Confidence            699999999999999998776322111                    112457777776542     2347899999999


Q ss_pred             cccccc---cccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725         95 QERFRS---LIPSYIRDSTVAVVVYDITNANSFHQTSKW  130 (355)
Q Consensus        95 ~~~~~~---~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  130 (355)
                      +++|..   .+..++++++++|+|||++++ .++....|
T Consensus        56 QErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l   93 (331)
T 3r7w_B           56 QLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNL   93 (331)
T ss_dssp             CSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHH
T ss_pred             chhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHH
Confidence            999964   468889999999999999987 33333333

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.85  E-value=1.3e-20  Score=162.78  Aligned_cols=91  Identities=16%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             CcEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH---HHHHHHhhcC--cEEEEecCC
Q psy15725        254 STVAVVVYDITNANSFH--QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE---EGERKAKELN--VMFIETSAK  326 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~---~~~~~~~~~~--~~~~~~SA~  326 (355)
                      ++++++|+|+++..++.  ....|+..+.... .++|+++|+||+|+.+.+.+...   ....++...+  +++++|||+
T Consensus       109 ~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  187 (228)
T 2qu8_A          109 NGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTL  187 (228)
T ss_dssp             SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTT
T ss_pred             ccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence            34455555555544432  1123444443321 36788888888887665555543   3344555666  899999999


Q ss_pred             CCCCHHHHHHHHHHHcCCC
Q psy15725        327 AGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~~  345 (355)
                      +|.||+++|++|.+.+.+.
T Consensus       188 ~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          188 TGVGVEQAKITACELLKND  206 (228)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.85  E-value=2.3e-21  Score=161.98  Aligned_cols=86  Identities=17%  Similarity=0.203  Sum_probs=61.9

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      ++++++|+|.++   ++....|...+..   .+.|+++|+||+|+...+.+. .....+++..+++++++||++|.||++
T Consensus        86 ~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~  158 (188)
T 2wjg_A           86 PDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEE  158 (188)
T ss_dssp             CSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred             CCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHH
Confidence            456666776553   3444556665554   468888888888875444333 234566667788999999999999999


Q ss_pred             HHHHHHHHcCCCC
Q psy15725        334 LFRRVAAALPGMD  346 (355)
Q Consensus       334 l~~~l~~~i~~~~  346 (355)
                      +|++|.+.+....
T Consensus       159 l~~~i~~~~~~~~  171 (188)
T 2wjg_A          159 LKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.85  E-value=2.8e-21  Score=162.47  Aligned_cols=85  Identities=11%  Similarity=0.110  Sum_probs=53.4

Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH--HHHHH-HHhhcCcEEEEecCCCCCCH
Q psy15725        255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGER-KAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~-~~~~~~~~~~~~SA~~~~gv  331 (355)
                      +++++|+|+++..+..+.. +...+..   .++|+++|+||+|+.+.+.+..  ++... +....+++++++||++|.||
T Consensus       107 ~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  182 (195)
T 1svi_A          107 KAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGK  182 (195)
T ss_dssp             EEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTH
T ss_pred             CEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCH
Confidence            4556666666555544321 1222222   4677888888888765443322  11111 33234579999999999999


Q ss_pred             HHHHHHHHHHcC
Q psy15725        332 KQLFRRVAAALP  343 (355)
Q Consensus       332 ~~l~~~l~~~i~  343 (355)
                      +++|++|.+.+.
T Consensus       183 ~~l~~~l~~~l~  194 (195)
T 1svi_A          183 DEAWGAIKKMIN  194 (195)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998875

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.85  E-value=1.3e-20  Score=169.92  Aligned_cols=90  Identities=17%  Similarity=0.159  Sum_probs=59.6

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC--cEEEEecCCCCCCH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNV  331 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~SA~~~~gv  331 (355)
                      +|++++|+|+++..+..+...|+..+..   .++|+++|+||+|+.............+.+..+  .+++++||++|.|+
T Consensus        93 aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv  169 (308)
T 3iev_A           93 ADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANL  169 (308)
T ss_dssp             CSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSH
T ss_pred             CCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCH
Confidence            5555666666555555554444554444   356777777777765333333444445555553  68999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q psy15725        332 KQLFRRVAAALPGMD  346 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~  346 (355)
                      +++|++|.+.++...
T Consensus       170 ~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          170 DELVKTILKYLPEGE  184 (308)
T ss_dssp             HHHHHHHHHHSCBCC
T ss_pred             HHHHHHHHHhCccCC
Confidence            999999999998653

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.85  E-value=2.7e-21  Score=187.45  Aligned_cols=167  Identities=21%  Similarity=0.354  Sum_probs=113.3

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeee------ee--ee
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSK------TM--YL   80 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~------~~--~~   80 (355)
                      .+...+||+++|.+|||||||++++++..+...+.                       +|++.++...      .+  ..
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~-----------------------~t~g~~~~~~~~~~~~~v~~~~   93 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKES-----------------------QTHGLNVVTKQAPNIKGLENDD   93 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------CCCEEEEEGGGSGGGTTCS
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----------------------CccceEEEEeccccccceeecC
Confidence            46778999999999999999999999966544443                       4444444433      11  12


Q ss_pred             cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      ++....+.+|||||++.+..+...+++.+|++++|||+++.   +.+..|+.++                          
T Consensus        94 ~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l--------------------------  144 (535)
T 3dpu_A           94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHI--------------------------  144 (535)
T ss_dssp             TTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHH--------------------------
T ss_pred             CCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHH--------------------------
Confidence            33467899999999999988888888889999999887542   3334444433                          


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCc
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ  240 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~  240 (355)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (535)
T 3dpu_A          145 --------------------------------------------------------------------------------  144 (535)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEE
Q psy15725        241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMF  320 (355)
Q Consensus       241 ~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~  320 (355)
                                                             .... .++|+++|+||+|+...+.+..+.....+...++++
T Consensus       145 ---------------------------------------~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~  184 (535)
T 3dpu_A          145 ---------------------------------------EKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRF  184 (535)
T ss_dssp             ---------------------------------------HHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCE
T ss_pred             ---------------------------------------HHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCce
Confidence                                                   2222 356777777777776556666666777777778899


Q ss_pred             EEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        321 IETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       321 ~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      +++||++|.||+++|++|.+.+.....
T Consensus       185 ~~vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          185 HRISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             EECCC-----CTTHHHHHHHHHTCTTS
T ss_pred             EEEecCcccCHHHHHHHHHHHHhcccc
Confidence            999999999999999999999987543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.85  E-value=4.5e-21  Score=172.86  Aligned_cols=154  Identities=19%  Similarity=0.295  Sum_probs=117.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||+++++++.....                    ...+.+|++..+....  +++ .+.+.+||
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~--------------------~~~~~~Ti~~~~~~~~--~~~-~~~l~i~D   58 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFD--------------------TRRLGATIDVEHSHLR--FLG-NMTLNLWD   58 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGG--------------------GGGCCCCCSEEEEEEE--ETT-TEEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcc--------------------ccCcCCccceEEEEEE--eCC-ceEEEEEE
Confidence            468999999999999999999988531110                    1134456665555433  333 57899999


Q ss_pred             cCCcccc-----cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccc
Q psy15725         92 TAGQERF-----RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH  166 (355)
Q Consensus        92 ~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (355)
                      |||++.+     ...+..+++.+|++++|||++++++|+++..|...+....                            
T Consensus        59 t~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~----------------------------  110 (307)
T 3r7w_A           59 CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLR----------------------------  110 (307)
T ss_dssp             ECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHH----------------------------
T ss_pred             CCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHH----------------------------
Confidence            9999988     7888889999999999999999999999988766665431                            


Q ss_pred             cCccccccccccCCCccEEEEEeecCCCCc--ccc----eehhhhhhhhhccC---eEEEEeeeeeccccc
Q psy15725        167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSD--KRQ----VSTEEGERKAKELN---VMFIETSAKAGYNVK  228 (355)
Q Consensus       167 ~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~----v~~~~~~~~~~~~~---~~~~~~sa~~~~~v~  228 (355)
                                 ....++|+++|+||+|+..  .+.    +...+..+++...+   .+++++|+.+ .++.
T Consensus       111 -----------~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~  169 (307)
T 3r7w_A          111 -----------KYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLY  169 (307)
T ss_dssp             -----------HHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHH
T ss_pred             -----------HhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHH
Confidence                       1124799999999999976  444    55677778888886   7999999987 4433

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.85  E-value=2.1e-21  Score=162.38  Aligned_cols=61  Identities=26%  Similarity=0.279  Sum_probs=46.9

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-------EEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-------MFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-------~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      .++|+++|+||+|+...+   .+....+++..++       +++++||++|.||+++|++|.+.+...+++
T Consensus       121 ~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  188 (190)
T 2cxx_A          121 LDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR  188 (190)
T ss_dssp             TTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred             cCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence            478999999999986544   4455566666554       479999999999999999999998776554

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.84  E-value=6.5e-21  Score=157.26  Aligned_cols=90  Identities=20%  Similarity=0.243  Sum_probs=55.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|.+......                     . ..++...++....+.+++  ..+.+||
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~---------------------~-~~~~~t~~~~~~~~~~~~--~~~~l~D   58 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIV---------------------T-DIAGTTRDVLREHIHIDG--MPLHIID   58 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCC---------------------C-SSTTCCCSCEEEEEEETT--EEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccee---------------------e-CCCCceeceeeEEEEECC--eEEEEEE
Confidence            458999999999999999999998542110                     0 112222344445555555  3588999


Q ss_pred             cCCcccccccc--------cccccCccEEEEEEECCCcchhh
Q psy15725         92 TAGQERFRSLI--------PSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        92 ~~g~~~~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      |||+.++....        ..+++.+|++++|||++++.+++
T Consensus        59 t~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~  100 (172)
T 2gj8_A           59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD  100 (172)
T ss_dssp             CCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS
T ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH
Confidence            99986532211        12355666666666666655554

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.84  E-value=1.5e-20  Score=152.85  Aligned_cols=53  Identities=21%  Similarity=0.168  Sum_probs=36.8

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ++|+++|+||+|+.+.+    .+...++ ..++ +++++||++|.|++++|++|.+.+|
T Consensus       108 ~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  161 (161)
T 2dyk_A          108 GKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERLP  161 (161)
T ss_dssp             TCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             CCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence            45666666666664331    1112223 3455 7999999999999999999999875

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.83  E-value=3.5e-20  Score=162.70  Aligned_cols=84  Identities=14%  Similarity=0.171  Sum_probs=59.9

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      +|++++|+|.++..+.   ..|...+.+   .++|+++|+||+|+...+.+.. ....+++.++++++++||++|.||++
T Consensus        84 ~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~e  156 (258)
T 3a1s_A           84 ADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEE  156 (258)
T ss_dssp             CSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHH
T ss_pred             CCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHH
Confidence            5666777776654332   234444444   4688888888888754444432 34566777889999999999999999


Q ss_pred             HHHHHHHHcCC
Q psy15725        334 LFRRVAAALPG  344 (355)
Q Consensus       334 l~~~l~~~i~~  344 (355)
                      +|++|.+.+..
T Consensus       157 l~~~i~~~~~~  167 (258)
T 3a1s_A          157 LKEKIVEYAQK  167 (258)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhhc
Confidence            99999998753

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.82  E-value=7.1e-20  Score=153.61  Aligned_cols=87  Identities=14%  Similarity=0.125  Sum_probs=54.2

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc--CCHHHHHHHHhh-cCcEEEEecCCCCCC
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKE-LNVMFIETSAKAGYN  330 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~~~-~~~~~~~~SA~~~~g  330 (355)
                      ++++++|+|.++..+.... .....+..   .++|+++|+||+|+.+...  ...++...++.. .+++++++||++|.|
T Consensus       105 ~~~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  180 (195)
T 3pqc_A          105 LQMVFLLVDGRIPPQDSDL-MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEG  180 (195)
T ss_dssp             EEEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTT
T ss_pred             ceEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCC
Confidence            4556666666554433221 11222222   2678888888888754322  222333444444 336999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q psy15725        331 VKQLFRRVAAALPG  344 (355)
Q Consensus       331 v~~l~~~l~~~i~~  344 (355)
                      |+++|++|.+.+.+
T Consensus       181 v~~l~~~l~~~l~~  194 (195)
T 3pqc_A          181 ISELLDLISTLLKE  194 (195)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999998864

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.82  E-value=2e-20  Score=165.23  Aligned_cols=84  Identities=18%  Similarity=0.174  Sum_probs=57.9

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      +|++++|+|+++..   ....|...+.+   .++|+++|+||+|+...+.+. .....+++.++++++++||++|.||++
T Consensus        81 ~d~vi~V~D~t~~e---~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~e  153 (272)
T 3b1v_A           81 ADSILNVVDATNLE---RNLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQ  153 (272)
T ss_dssp             CSEEEEEEEGGGHH---HHHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred             CCEEEEEecCCchH---hHHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence            55566666655432   22234444444   478888888888875443333 234556677789999999999999999


Q ss_pred             HHHHHHHHcCC
Q psy15725        334 LFRRVAAALPG  344 (355)
Q Consensus       334 l~~~l~~~i~~  344 (355)
                      +|++|.+.+..
T Consensus       154 l~~~i~~~~~~  164 (272)
T 3b1v_A          154 VVKKAAHTTTS  164 (272)
T ss_dssp             HHHHHHHSCTT
T ss_pred             HHHHHHHHHhh
Confidence            99999998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.81  E-value=3.9e-20  Score=158.89  Aligned_cols=91  Identities=9%  Similarity=-0.031  Sum_probs=53.5

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH---HHHHHHHh------hcCcEEEEec
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST---EEGERKAK------ELNVMFIETS  324 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~---~~~~~~~~------~~~~~~~~~S  324 (355)
                      +|++++|+|.++..+.. ...++..+..   .++|+++|+||+|+.+.+....   .....+..      ..+++++++|
T Consensus       116 ~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~S  191 (223)
T 4dhe_A          116 LCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFS  191 (223)
T ss_dssp             EEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEB
T ss_pred             cCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEee
Confidence            35566667766544321 2233444433   4677777777777754332211   11111222      2457999999


Q ss_pred             CCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        325 AKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       325 A~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      |++|.||+++|++|.+.++.....
T Consensus       192 A~~g~gv~~l~~~l~~~~~~~~~~  215 (223)
T 4dhe_A          192 ALKRTGLDDAHALIESWLRPAAAD  215 (223)
T ss_dssp             TTTTBSHHHHHHHHHHHHC-----
T ss_pred             cCCCcCHHHHHHHHHHhcCccCCc
Confidence            999999999999999999876543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.80  E-value=1.2e-20  Score=161.71  Aligned_cols=155  Identities=19%  Similarity=0.254  Sum_probs=104.5

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      ......+.++|+++|++|||||||+++|.+..+...                    ...+.++++.++         ...
T Consensus         5 ~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~--------------------~~~~~~~~~~~~---------~~~   55 (218)
T 1nrj_B            5 GIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT--------------------VVSQEPLSAADY---------DGS   55 (218)
T ss_dssp             -----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB--------------------CCCSSCEEETTG---------GGS
T ss_pred             CCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe--------------------eeecCceEEEEe---------eCc
Confidence            334455679999999999999999999999664331                    011222322222         334


Q ss_pred             EEEEEecCCcccccccccccccC----ccEEEEEEECC-CcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRD----STVAVVVYDIT-NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      .+.+|||||++.+...+..+++.    +|++++|||++ ++.+|.....|+.++.....                     
T Consensus        56 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~---------------------  114 (218)
T 1nrj_B           56 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE---------------------  114 (218)
T ss_dssp             SCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHH---------------------
T ss_pred             eEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhccc---------------------
Confidence            68999999999999888888887    89999999999 88999998888887754310                     


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCccccee------hhhhhhhhhccCeEEEEeeeeeccc
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS------TEEGERKAKELNVMFIETSAKAGYN  226 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~------~~~~~~~~~~~~~~~~~~sa~~~~~  226 (355)
                                      .....++|+++|+||+|+...+.+.      ..+...++...+.+++++|+.++.+
T Consensus       115 ----------------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          115 ----------------SSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             ----------------HHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             ----------------ccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence                            0023479999999999997765443      3445556666667788888876654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.80  E-value=5.9e-19  Score=169.33  Aligned_cols=268  Identities=16%  Similarity=0.122  Sum_probs=141.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+..+|+++|++|+|||||+++|+..........++......-..+ .+....+  ...+.++......+.++...+++|
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~-~d~~~~e--~~~GiTi~~~~~~~~~~~~~i~li   87 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHAT-SDWMELE--KQRGISVTTSVMQFPYKDYLINLL   87 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCH-HHHHHHH--HHHCCSSSSSEEEEEETTEEEEEE
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeecccccccee-cccchhh--hcCCeeEEEeEEEEEeCCEEEEEE
Confidence            3468999999999999999999975321111111110000000000 0000000  012333333444444556789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||+.+|...+..+++.+|++++|+|+++..+.+....|... ..                                  
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~-~~----------------------------------  132 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVC-RL----------------------------------  132 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHH-HT----------------------------------
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH----------------------------------
Confidence            9999999999999999999999999999998777776666432 21                                  


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccc--cc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSL--IP  248 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~--~~  248 (355)
                                .++|+++|+||+|+....  ......++.+.++..+..+....+.+.  -+.-++|......+.-.  ..
T Consensus       133 ----------~~iPiivviNK~Dl~~~~--~~~~l~ei~~~l~~~~~~~~~pig~~~--~f~gv~dl~~~~~~~~~~~~~  198 (528)
T 3tr5_A          133 ----------RHTPIMTFINKMDRDTRP--SIELLDEIESILRIHCAPVTWPIGMGK--YFKGIYHLIEDAIYLYQPGKH  198 (528)
T ss_dssp             ----------TTCCEEEEEECTTSCCSC--HHHHHHHHHHHHCCEEEESEEEESCGG--GCCEEEETTTTEEEECCTTSS
T ss_pred             ----------cCCCEEEEEeCCCCcccc--HHHHHHHHHHhhCCCceeeecccccCC--ceeEEEEeecCEEEEecCCCC
Confidence                      278999999999986432  223344455555655555443332211  11122222221111000  00


Q ss_pred             ccccCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                      .......   ..-+..+.. +.. +.+..+.+.+..             .+. ...........+.....+|++++||++
T Consensus       199 ~~~~~~~---~~~~~~~~~-~~~~l~~~~~~~~e~~-------------~l~-~~~~~~~~~~~~~~~~~~PV~~gSA~~  260 (528)
T 3tr5_A          199 ERVGESE---RIEGINNPE-LDKKLGDLASELRNEI-------------ELV-KGASHPFEREGYLKGELTPIFFGSAIN  260 (528)
T ss_dssp             SSTTCSC---EEECTTCHH-HHHHHTHHHHHHHHHH-------------HHH-HHHSCCCCHHHHHTTSEEEEEECBGGG
T ss_pred             Ccccccc---cccccchHH-HHHHHHHHHHHHhhhc-------------chh-hhhhhHHHHHHHhcCceeEEEeccccC
Confidence            0001111   111222221 111 111011111000             000 000000002344444557999999999


Q ss_pred             CCCHHHHHHHHHHHcCCCCCC
Q psy15725        328 GYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      |.||+++|++|.+.+|.+...
T Consensus       261 ~~GV~~Lld~i~~~~p~p~~~  281 (528)
T 3tr5_A          261 NFGVGELLDAFVKEAPPPQGR  281 (528)
T ss_dssp             TBSHHHHHHHHHHHSCCCCCB
T ss_pred             CccHHHHHHHHHHhCCCCCcc
Confidence            999999999999999987643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.80  E-value=3.2e-19  Score=159.88  Aligned_cols=88  Identities=20%  Similarity=0.156  Sum_probs=54.7

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCceEEEEeeCCCCCCccc-CCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWI-DDVRTERGSDVIIMLVGNKTDLSDKRQ-VSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                      ..+|++++|+|+++..+..  ..|+ +.+.... .++|+++|+||+|+.+.+. + .+....+  ....+++++||++|.
T Consensus        85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~g~  158 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALDER  158 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTCHH
T ss_pred             hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCCCC
Confidence            3466666666666554332  2333 3333321 3678888888888754332 1 1111111  123589999999999


Q ss_pred             CHHHHHHHHHHHcCCC
Q psy15725        330 NVKQLFRRVAAALPGM  345 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~  345 (355)
                      |++++|++|.+.++..
T Consensus       159 gv~~l~~~l~~~l~~~  174 (301)
T 1wf3_A          159 QVAELKADLLALMPEG  174 (301)
T ss_dssp             HHHHHHHHHHTTCCBC
T ss_pred             CHHHHHHHHHHhcccC
Confidence            9999999999988754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.80  E-value=3.3e-19  Score=157.93  Aligned_cols=87  Identities=30%  Similarity=0.226  Sum_probs=58.4

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      +|++++|+|.++..   ....+...+.+.  ..+|+++|+||+|+...+.+... ...+.+..+++++++||++|.|+++
T Consensus        82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~  155 (271)
T 3k53_A           82 ADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEE  155 (271)
T ss_dssp             CSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred             CcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHH
Confidence            56666666665532   222333333332  12888888888887543333222 4556677789999999999999999


Q ss_pred             HHHHHHHHcCCCC
Q psy15725        334 LFRRVAAALPGMD  346 (355)
Q Consensus       334 l~~~l~~~i~~~~  346 (355)
                      +|++|.+.+....
T Consensus       156 l~~~i~~~~~~~~  168 (271)
T 3k53_A          156 LKRMIALMAEGKV  168 (271)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhccc
Confidence            9999999886554

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.78  E-value=1.7e-18  Score=164.07  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=39.9

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ++|+++|+||+|+.......   ...+.+...++++++||++|.||+++|++|.+.+.
T Consensus       343 ~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          343 AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            57777888888875443321   12233322368999999999999999999999987

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.78  E-value=2.3e-19  Score=161.32  Aligned_cols=86  Identities=16%  Similarity=0.173  Sum_probs=65.8

Q ss_pred             CCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcc----------------cCCHHHHHHHH----------hh
Q psy15725        263 ITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKR----------------QVSTEEGERKA----------KE  315 (355)
Q Consensus       263 ~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~----------------~v~~~~~~~~~----------~~  315 (355)
                      .++..++++...|+..+.... ..++|++|++||+|+...+                .+..+++..++          ..
T Consensus       210 ~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~  289 (327)
T 3ohm_A          210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSD  289 (327)
T ss_dssp             CTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTT
T ss_pred             cccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccccc
Confidence            345566777777777776543 2689999999999985433                46677777773          34


Q ss_pred             cCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        316 LNVMFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       316 ~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      .++.+++|||+++.||+++|+.+.+.|.+...+
T Consensus       290 ~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~  322 (327)
T 3ohm_A          290 KIIYSHFTCATDTENIRFVFAAVKDTILQLNLK  322 (327)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHH
Confidence            567899999999999999999999999876543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.77  E-value=4.4e-18  Score=159.05  Aligned_cols=117  Identities=15%  Similarity=0.051  Sum_probs=74.2

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCC---ceeeeecccceeeecccCCCCCccccccceeeeeeeeee---cC
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT---YQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---ED   82 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~   82 (355)
                      ...+.++|+++|++|+|||||+++|++......   ...++ +.+          ........+..+........   ..
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~   72 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNI-GVC----------ESCKKPEAYVTEPSCKSCGSDDEPK   72 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEE-EEC----------TTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccce-eec----------cccccccceeccccccccccccccc
Confidence            455779999999999999999999998543321   11111 000          00000000000000000000   12


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      ....+.+|||||++.|...+...+..+|++++|+|+++..++.+...|+..+..
T Consensus        73 ~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~  126 (403)
T 3sjy_A           73 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI  126 (403)
T ss_dssp             EEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH
Confidence            236899999999999999999999999999999999997767666666665543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.77  E-value=1.5e-19  Score=168.52  Aligned_cols=189  Identities=15%  Similarity=0.139  Sum_probs=126.4

Q ss_pred             CCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc
Q psy15725          4 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR   83 (355)
Q Consensus         4 ~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   83 (355)
                      +++.......++|+++|+.|+|||||+++|++..+...                      ...+++..+.....+.+...
T Consensus        25 sm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~----------------------~~~~gtT~d~~~~~~~~~~~   82 (423)
T 3qq5_A           25 TMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV----------------------SDYAGTTTDPVYKSMELHPI   82 (423)
T ss_dssp             CCCC---CCCEEEEEECSCSTTTTTTTTSSCC-----------------------------------CCCCEEEEEETTT
T ss_pred             ccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc----------------------CCCCCeeeeeEEEEEEECCC
Confidence            34444556789999999999999999999998653211                      01112222333344444443


Q ss_pred             EEEEEEEecCCcccccccc-------cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccc
Q psy15725         84 TVRLQLWDTAGQERFRSLI-------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTH  156 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~-------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
                       ..+.+|||||+..|..+.       ..+++.+|++++|||++..   +....|+..+...                   
T Consensus        83 -~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~-------------------  139 (423)
T 3qq5_A           83 -GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM-------------------  139 (423)
T ss_dssp             -EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT-------------------
T ss_pred             -CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc-------------------
Confidence             278999999998887653       3468899999999999332   3345566666542                   


Q ss_pred             ccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEe
Q psy15725        157 LSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWD  236 (355)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D  236 (355)
                                               ++|+++|+||+|+.+.+..  +...+++...+.+++++|+.++.+++.++..+.+
T Consensus       140 -------------------------~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~  192 (423)
T 3qq5_A          140 -------------------------EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISE  192 (423)
T ss_dssp             -------------------------TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred             -------------------------CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence                                     7899999999999765543  4556677778889999999999999887665554


Q ss_pred             CCCcccccccccccccCCcEEEEEEeCC
Q psy15725        237 TAGQERFRSLIPSYIRDSTVAVVVYDIT  264 (355)
Q Consensus       237 ~~g~~~~~~~~~~~~~~~~~vi~v~d~~  264 (355)
                      .........+...+....+.++++..++
T Consensus       193 ~l~~~~e~~l~~dLv~~gd~v~lv~pid  220 (423)
T 3qq5_A          193 ILPGDEEIPYLGDLIDGGDLVILVVPID  220 (423)
T ss_dssp             HSCCCCCCCSCSCCCCTTCCEEEECCCS
T ss_pred             hhhhhccCcchhhccccCceEEEEeecc
Confidence            4333323345567778888888888665

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.76  E-value=3.8e-19  Score=155.83  Aligned_cols=149  Identities=13%  Similarity=0.178  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      .+|+++|.+|||||||+|+|++.....                       ...|++..+.....+..++  ..+.+||||
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v-----------------------~~~pg~Tv~~~~~~~~~~~--~~~~lvDtp   56 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRV-----------------------GNWPGVTVEKKTGEFLLGE--HLIEITDLP   56 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEE-----------------------EECTTSSSEEEEEEEEETT--EEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCc-----------------------cCCCCceEEEEEEEEEECC--eEEEEEeCC
Confidence            379999999999999999999853110                       1123333344444444444  479999999


Q ss_pred             Ccccccc----------cccccc--cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccc
Q psy15725         94 GQERFRS----------LIPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHH  161 (355)
Q Consensus        94 g~~~~~~----------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
                      |+..+..          +...++  ..+|++++|+|+++.+++..+..|+.+                            
T Consensus        57 G~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~----------------------------  108 (256)
T 3iby_A           57 GVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFE----------------------------  108 (256)
T ss_dssp             CCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT----------------------------
T ss_pred             CcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHH----------------------------
Confidence            9977764          445556  789999999999996555444333222                            


Q ss_pred             cCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEE
Q psy15725        162 ANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLW  235 (355)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~  235 (355)
                                         .++|+++|+||+|+...+.+.. ....+....+++++++|+.++.+++.++..+.
T Consensus       109 -------------------~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~  162 (256)
T 3iby_A          109 -------------------LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLL  162 (256)
T ss_dssp             -------------------SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHH
T ss_pred             -------------------cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence                               2789999999999865544333 24456677889999999999999887654443

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.76  E-value=9e-18  Score=162.88  Aligned_cols=112  Identities=17%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee-----cCcEEEE
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-----EDRTVRL   87 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~   87 (355)
                      ..||+++|+.++|||||+++|+.....-... .      +-..++ +....+.  +.|+++......+     ++....+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~-~------~~~~~~-D~~~~Er--erGiTi~~~~~~~~~~~~~g~~~~l   73 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-E------MEAQVL-DSMDLER--ERGITIKAQSVTLDYKASDGETYQL   73 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC------------------------------------CEEEEEEECTTSCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccc-c------cccccc-ccchhhh--cccceeeeeEEEEEEecCCCCeEEE
Confidence            4799999999999999999998743110000 0      000000 1111111  2233333222222     4557899


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      ++|||||+.+|...+...++.+|++++|||+++..+++....|...+
T Consensus        74 ~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~  120 (599)
T 3cb4_D           74 NFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM  120 (599)
T ss_dssp             EEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH
T ss_pred             EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888777776554

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.76  E-value=1.2e-17  Score=161.67  Aligned_cols=113  Identities=16%  Similarity=0.269  Sum_probs=69.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcC--CCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeee---cCcEEE
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL---EDRTVR   86 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~   86 (355)
                      ...+|+++|+.++|||||+++|+...  +....         .-..+ .+....+....+.+......+.+   ++....
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~---------~~~~~-~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~   74 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISERE---------KREQL-LDTLDVERERGITVKMQAVRMFYKAKDGNTYK   74 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------CCCCSEEEEEECTTSCEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCccccc---------ccccc-cccchhhhcccceeeeeEEEEEEEcCCCCeEE
Confidence            46799999999999999999998732  11100         00000 01111111111111111112212   455689


Q ss_pred             EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      +++|||||+.+|...+...++.+|++++|||+++..+++....|....
T Consensus        75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~  122 (600)
T 2ywe_A           75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV  122 (600)
T ss_dssp             EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH
T ss_pred             EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH
Confidence            999999999999998888999999999999999988888777776554

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.76  E-value=8.3e-19  Score=155.41  Aligned_cols=150  Identities=17%  Similarity=0.248  Sum_probs=103.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ++++|+++|.+|||||||+|+|++..+..                       ...|++..+.....+...+  ..+.+||
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v-----------------------~~~~g~t~~~~~~~~~~~~--~~~~liD   56 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRV-----------------------GNWAGVTVERKEGQFSTTD--HQVTLVD   56 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEE-----------------------EECTTSSSEEEEEEEECSS--CEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCccc-----------------------CCCCCeeEEEEEEEEEeCC--CceEEEE
Confidence            46899999999999999999999854211                       1112223333344444433  4688999


Q ss_pred             cCCccccccc----------ccccc--cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         92 TAGQERFRSL----------IPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        92 ~~g~~~~~~~----------~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      |||+..+...          ...++  +.+|++++|+|+++.+....+..|+.++                         
T Consensus        57 tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------------------------  111 (274)
T 3i8s_A           57 LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLEL-------------------------  111 (274)
T ss_dssp             CCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------------------------
T ss_pred             CcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhc-------------------------
Confidence            9999877632          22222  6899999999999865544433333322                         


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL  234 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i  234 (355)
                                            ++|+++|+||+|+.+.+.+.. ....++...+++++++|+.++.+++.++..+
T Consensus       112 ----------------------~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i  163 (274)
T 3i8s_A          112 ----------------------GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAI  163 (274)
T ss_dssp             ----------------------TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHH
T ss_pred             ----------------------CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence                                  799999999999865444332 3456677788999999999999988765443

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.75  E-value=3e-20  Score=169.55  Aligned_cols=119  Identities=21%  Similarity=0.286  Sum_probs=100.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~  296 (355)
                      +.+.+.+||++|++.++.+|..++.+++++|||+|+++          ..++++...|+..+.... ..+.|++|++||+
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence            46789999999999999999999999999999999998          567888888988887643 3689999999999


Q ss_pred             CCCCcc---------------cCCHHHHHHHHh-----------hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        297 DLSDKR---------------QVSTEEGERKAK-----------ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       297 Dl~~~~---------------~v~~~~~~~~~~-----------~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      |+...+               .+..+++..++.           ..++++++|||+++.||+++|+++.+.|....
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            985322               356677777765           35689999999999999999999999987544

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=5.9e-18  Score=162.59  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=65.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+..+|+++|++|+|||||+++|+.........+++.+.....  .....+.. ..++.++++......+.++...+++|
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~--~~~~D~~~-~E~~rGiTi~~~~~~~~~~~~~i~li   87 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQ--HAKSDWME-MEKQRGISITTSVMQFPYHDCLVNLL   87 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------CCTTEEEEEETTEEEEEE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCcccc--ceeeccch-hcccCCcceeeeEEEEEECCeEEEEE
Confidence            4578999999999999999999997421111111111100000  00001100 11233333333344445556789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcch
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANS  123 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  123 (355)
                      ||||+.+|...+..+++.+|++|+|+|+++...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~  120 (529)
T 2h5e_A           88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE  120 (529)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred             ECCCChhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence            999999999988899999999999999998643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.74  E-value=5.1e-18  Score=154.25  Aligned_cols=62  Identities=21%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVKQLFRRVAAALPGMDSTEN  350 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~  350 (355)
                      .++|+++|+||+|+...+    +....+.+...  ++++++||+++.||++++++|.+.+...+....
T Consensus       273 ~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~  336 (342)
T 1lnz_A          273 TERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPL  336 (342)
T ss_dssp             TTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCS
T ss_pred             cCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCccccC
Confidence            356777777777765322    22233444444  689999999999999999999999987765333

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.74  E-value=1.5e-17  Score=164.86  Aligned_cols=276  Identities=13%  Similarity=0.079  Sum_probs=142.1

Q ss_pred             CCCCCCCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC--ccccccceeeeeeee
Q psy15725          1 MSSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN--TYQATIGIDFLSKTM   78 (355)
Q Consensus         1 ~~~~~~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~~~   78 (355)
                      |+..+. .......+|+++|++|+|||||+++|+...........+.+++..+     +....  ....|+...    ..
T Consensus         1 M~~~l~-~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~-----d~~~~E~~~giTi~~~----~~   70 (691)
T 1dar_A            1 MAVKVE-YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATM-----DFMEQERERGITITAA----VT   70 (691)
T ss_dssp             CCTTCC-CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC---------------------------------CC----EE
T ss_pred             CCcccc-CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceec-----cCchhhhhcccccccc----eE
Confidence            554432 2345679999999999999999999986321111001111110000     00011  112233222    22


Q ss_pred             eecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccc
Q psy15725         79 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLS  158 (355)
Q Consensus        79 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
                      .+.+....+++|||||+.+|...+..+++.+|++++|+|+++..+++....|.... .                      
T Consensus        71 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~-~----------------------  127 (691)
T 1dar_A           71 TCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE-K----------------------  127 (691)
T ss_dssp             EEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-H----------------------
T ss_pred             EEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH-H----------------------
Confidence            23334578999999999999999999999999999999999988888777665432 2                      


Q ss_pred             ccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeE----EEEeeeeeccccceEEEEE
Q psy15725        159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM----FIETSAKAGYNVKQVRLQL  234 (355)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~----~~~~sa~~~~~v~~i~~~i  234 (355)
                                            .++|+++|+||+|+....  ......++...++..    ...+++  +.+...    +
T Consensus       128 ----------------------~~~p~ivviNKiD~~~~~--~~~~~~~l~~~l~~~~~~~~~Pi~~--~~~~~g----~  177 (691)
T 1dar_A          128 ----------------------YKVPRIAFANKMDKTGAD--LWLVIRTMQERLGARPVVMQLPIGR--EDTFSG----I  177 (691)
T ss_dssp             ----------------------TTCCEEEEEECTTSTTCC--HHHHHHHHHHTTCCCEEECEEEESC--GGGCCE----E
T ss_pred             ----------------------cCCCEEEEEECCCcccCC--HHHHHHHHHHHhCCCccceeccccC--CCcccc----h
Confidence                                  278999999999986532  112222333333322    223332  222222    2


Q ss_pred             EeCCCccccccccc-ccccCCcEEEEEEeCCCcccHH-HHHHHHHHHHhhcCCCce--EEEEeeCCCCCCcccCCHHHHH
Q psy15725        235 WDTAGQERFRSLIP-SYIRDSTVAVVVYDITNANSFH-QTSKWIDDVRTERGSDVI--IMLVGNKTDLSDKRQVSTEEGE  310 (355)
Q Consensus       235 ~D~~g~~~~~~~~~-~~~~~~~~vi~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~p--iilv~nK~Dl~~~~~v~~~~~~  310 (355)
                      .|......+  .|. .  .+..  ....+..  ..+. ....+.+.+.+...+.-.  +--.++..++ +...+......
T Consensus       178 ~d~~~~~~~--~~~~~--~g~~--~~~~~~~--~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~-~~~~~~~~~~~  248 (691)
T 1dar_A          178 IDVLRMKAY--TYGND--LGTD--IREIPIP--EEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEP-TEEELVAAIRK  248 (691)
T ss_dssp             EETTTTEEE--EECST--TSCC--EEEECCC--GGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCC-CHHHHHHHHHH
T ss_pred             hhhhcceee--EeccC--CCce--eEEecCC--HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCC-CHHHHHHHHHH
Confidence            332211111  000 0  0110  1111221  2222 233444444332211000  0000000011 11112122222


Q ss_pred             HHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        311 RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       311 ~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      .+.....+|++++||.+|.|++++++.|.+.+|.+...
T Consensus       249 ~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~  286 (691)
T 1dar_A          249 GTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDI  286 (691)
T ss_dssp             HHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTS
T ss_pred             HHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhc
Confidence            33333447999999999999999999999999988653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.74  E-value=5.3e-17  Score=151.96  Aligned_cols=90  Identities=17%  Similarity=0.154  Sum_probs=59.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCcccc--ccceeeeeeeeee---------
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMYL---------   80 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~---------   80 (355)
                      +.++|+++|+.++|||||+++|++....                    .+..+..+  |+...+....+..         
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~--------------------~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~   66 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTD--------------------RHSEELRRGISIRLGYADCEIRKCPQCGTYTT   66 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCC--------------------C-------CCCCCCEEEEEEEEECTTTCCEES
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc--------------------cCcccccCCcEEEecccccccccccccccccc
Confidence            5699999999999999999999863211                    11111122  2222222211110         


Q ss_pred             ----c--C----cEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         81 ----E--D----RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        81 ----~--~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                          +  +    ....+.+|||||++.|...+...+..+|++++|+|+++.
T Consensus        67 ~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g  117 (408)
T 1s0u_A           67 KPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP  117 (408)
T ss_dssp             SSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC
T ss_pred             cccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC
Confidence                1  1    136899999999999988887778888999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.74  E-value=1.6e-17  Score=149.05  Aligned_cols=89  Identities=19%  Similarity=0.187  Sum_probs=55.5

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCc-EEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~~~g  330 (355)
                      ..+|++++|+|.++ .+  ....++.....  ..+.|+++++||+|+...+.........+.+..++ .++++||++|.|
T Consensus        87 ~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~  161 (301)
T 1ega_A           87 GDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  161 (301)
T ss_dssp             CCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             hcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence            33555566666544 22  22223322221  14688888888888764222112233344455565 799999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q psy15725        331 VKQLFRRVAAALPGM  345 (355)
Q Consensus       331 v~~l~~~l~~~i~~~  345 (355)
                      +++++++|.+.++..
T Consensus       162 v~~l~~~i~~~l~~~  176 (301)
T 1ega_A          162 VDTIAAIVRKHLPEA  176 (301)
T ss_dssp             HHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHHhCCcC
Confidence            999999999988754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.73  E-value=1.9e-17  Score=157.08  Aligned_cols=82  Identities=17%  Similarity=0.244  Sum_probs=54.6

Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                      .+|++++|+|++++.++++.. +++.+     .++|+++|+||+|+...  +...+...+. ..+++++++||++|.||+
T Consensus       323 ~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~Gi~  393 (482)
T 1xzp_A          323 KADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEGLE  393 (482)
T ss_dssp             HCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred             cccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCCHH
Confidence            356666666666665554321 22222     36789999999998532  3333333332 234689999999999999


Q ss_pred             HHHHHHHHHcC
Q psy15725        333 QLFRRVAAALP  343 (355)
Q Consensus       333 ~l~~~l~~~i~  343 (355)
                      +++++|.+.+.
T Consensus       394 eL~~~l~~~~~  404 (482)
T 1xzp_A          394 KLEESIYRETQ  404 (482)
T ss_dssp             HHHHHHHHHTH
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.72  E-value=2.6e-17  Score=156.82  Aligned_cols=97  Identities=21%  Similarity=0.224  Sum_probs=62.8

Q ss_pred             CCCCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEE
Q psy15725          6 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV   85 (355)
Q Consensus         6 ~~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   85 (355)
                      .+....+.++|+++|+.++|||||+++|++......                .+.+..+..+++..+.....+.+++  .
T Consensus        12 ~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~----------------~d~~~~e~~~GiTi~~~~~~~~~~~--~   73 (482)
T 1wb1_A           12 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSA----------------HDKLPESQKRGITIDIGFSAFKLEN--Y   73 (482)
T ss_dssp             -CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC------------------------------------CCCEEEETT--E
T ss_pred             chhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccc----------------cccccccccCccEEecceEEEEECC--E
Confidence            344567889999999999999999999987441000                0112222222222232223333333  6


Q ss_pred             EEEEEecCCcccccccccccccCccEEEEEEECCC
Q psy15725         86 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        86 ~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      .+.+|||||+++|...+...+..+|++++|+|+++
T Consensus        74 ~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~  108 (482)
T 1wb1_A           74 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE  108 (482)
T ss_dssp             EEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT
T ss_pred             EEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCC
Confidence            89999999999998888888999999999999987

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.7e-18  Score=143.92  Aligned_cols=124  Identities=21%  Similarity=0.312  Sum_probs=88.5

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.++|+++|++|||||||+++|.+..+....                    ....++++.++         ....+.+
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~--------------------~~~~~~~~~~~---------~~~~~~l   95 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--------------------VSQEPLSAADY---------DGSGVTL   95 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CC---------CCTTCSE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCccc--------------------ccCCCceeeee---------cCCeEEE
Confidence            356789999999999999999999996543210                    01122222221         3346889


Q ss_pred             EecCCcccccccccccccC----ccEEEEEEECC-CcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRD----STVAVVVYDIT-NANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS  164 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~----~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
                      |||||++.+...+..++..    +|++++|||++ ++.++..+..|+..+.....                         
T Consensus        96 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------------------------  150 (193)
T 2ged_A           96 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE-------------------------  150 (193)
T ss_dssp             EEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred             EECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhh-------------------------
Confidence            9999999998888888776    89999999999 88999988888877754210                         


Q ss_pred             cccCccccccccccCCCccEEEEEeecCCCCcccc
Q psy15725        165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ  199 (355)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  199 (355)
                                  .....++|+++|+||+|+.+.+.
T Consensus       151 ------------~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          151 ------------SSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             ------------HHSTTCCCEEEEEECTTSTTCCC
T ss_pred             ------------hccccCCCEEEEEEchHhcCCCC
Confidence                        00224799999999999976543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.72  E-value=5e-17  Score=149.51  Aligned_cols=88  Identities=19%  Similarity=0.294  Sum_probs=67.1

Q ss_pred             CcEEEEEEeCCCcc--cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        254 STVAVVVYDITNAN--SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       254 ~~~vi~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      ++.+++|+|+++..  +++....|+..+.... .++|+++|+||+|+.....+  .+...++...+++++++||++|.||
T Consensus       247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi  323 (357)
T 2e87_A          247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGI  323 (357)
T ss_dssp             CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred             CCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCH
Confidence            56677888877765  5666677777776643 27999999999998654433  3344555567789999999999999


Q ss_pred             HHHHHHHHHHcCC
Q psy15725        332 KQLFRRVAAALPG  344 (355)
Q Consensus       332 ~~l~~~l~~~i~~  344 (355)
                      ++++++|.+.+..
T Consensus       324 ~~l~~~i~~~l~~  336 (357)
T 2e87_A          324 DLVKEEIIKTLRP  336 (357)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.72  E-value=1.5e-17  Score=161.39  Aligned_cols=98  Identities=19%  Similarity=0.242  Sum_probs=66.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeee------------e
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT------------M   78 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~------------~   78 (355)
                      .+..+|+++|++|+|||||+++|++..+....++                   ..+++++..+....            .
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~g-------------------giT~~ig~~~~~~~~~~~~~~~~~~~~   63 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAG-------------------GITQHIGATEIPMDVIEGICGDFLKKF   63 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----------------------CCCBTTEEEEEHHHHHHHSCGGGGGC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCC-------------------ceecccCeEEEeechhhhhcccccccc
Confidence            3457999999999999999999998543222111                   11222332222111            0


Q ss_pred             eecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCC---cchhhhH
Q psy15725         79 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN---ANSFHQT  127 (355)
Q Consensus        79 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~  127 (355)
                      ..+.....+++|||||++.|...+...++.+|++|+|||+++   +++++.+
T Consensus        64 ~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l  115 (594)
T 1g7s_A           64 SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL  115 (594)
T ss_dssp             GGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH
T ss_pred             ccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH
Confidence            011122359999999999999999999999999999999999   4555443

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=7.4e-17  Score=160.14  Aligned_cols=115  Identities=18%  Similarity=0.197  Sum_probs=71.8

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCc--cccccceeeeeeeeee-----cC
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-----ED   82 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~~~~~~-----~~   82 (355)
                      ..+..+|+|+|+.|+|||||+++|+.....-.....+..+...+     +....+  ...|+....  ..+.+     ++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~-----D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~   79 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATM-----DWMEQEQERGITITSAA--TTAFWSGMAKQY   79 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceee-----cChhhHHhcCceeeece--EEEEECCccccC
Confidence            34568999999999999999999986321100000111010000     111111  111222211  12222     23


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHH
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI  131 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~  131 (355)
                      ....+++|||||+.+|...+..+++.+|++|+|+|+++..+.+....|.
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~  128 (704)
T 2rdo_7           80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR  128 (704)
T ss_pred             CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH
Confidence            3478999999999999999999999999999999999977666655553

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.72  E-value=2.1e-18  Score=164.89  Aligned_cols=95  Identities=14%  Similarity=0.182  Sum_probs=68.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +..+|+++|++|+|||||+++|.+..+...+.|                       ++..++....+..+. ...+.+||
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~-----------------------giT~~i~~~~v~~~~-g~~i~~iD   58 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAG-----------------------GITQHIGAFLVSLPS-GEKITFLD   58 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSC-----------------------CBCCCTTSCCBCSSC-SSCCBCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-----------------------ceeEEEeEEEEEeCC-CCEEEEEE
Confidence            346899999999999999999998554333222                       222222222222211 23688999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  130 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  130 (355)
                      |||++.|...+..+++.+|++++|||+++....+....|
T Consensus        59 TPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l   97 (537)
T 3izy_P           59 TPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI   97 (537)
T ss_dssp             CSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH
T ss_pred             CCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH
Confidence            999999999999999999999999999997666554443

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.72  E-value=2.2e-17  Score=155.85  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=55.1

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      ..+|++++|+|.+++.+... ..++..+     .++|+++|+||+|+.....+..  ...+.  .+++++++||++|.|+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~~--~~~~~--~~~~~i~iSAktg~Gi  371 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLITS--LEYPE--NITQIVHTAAAQKQGI  371 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGSTT--CCCCT--TCCCEEEEBTTTTBSH
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhHH--HHHhc--cCCcEEEEECCCCCCH
Confidence            44666777777666555433 2333333     2357888888888765443320  00001  3468999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q psy15725        332 KQLFRRVAAALPGMD  346 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~  346 (355)
                      ++++++|.+.+....
T Consensus       372 ~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          372 DSLETAILEIVQTGK  386 (462)
T ss_dssp             HHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHhccC
Confidence            999999999987654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.72  E-value=2.5e-19  Score=163.37  Aligned_cols=118  Identities=23%  Similarity=0.192  Sum_probs=93.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~  296 (355)
                      ..+.+.+||++|++.++.+|..++.+++++|+|+|++          +..++++...|++.+.+.. ..++|++|++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            4688999999999999999999999999999999998          7889999889998887643 3689999999999


Q ss_pred             CCCCccc--C-------------------CHHHHHHHHhh----------------cCcEEEEecCCCCCCHHHHHHHHH
Q psy15725        297 DLSDKRQ--V-------------------STEEGERKAKE----------------LNVMFIETSAKAGYNVKQLFRRVA  339 (355)
Q Consensus       297 Dl~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~~~SA~~~~gv~~l~~~l~  339 (355)
                      |+.+.+.  +                   ..+++..++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9853321  1                   13455555322                235679999999999999999999


Q ss_pred             HHcCCC
Q psy15725        340 AALPGM  345 (355)
Q Consensus       340 ~~i~~~  345 (355)
                      +.|...
T Consensus       341 ~~I~~~  346 (354)
T 2xtz_A          341 ETLRRR  346 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.72  E-value=9.4e-17  Score=150.44  Aligned_cols=92  Identities=17%  Similarity=0.183  Sum_probs=62.6

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCcccc--ccceeeeeeeeee-------
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMYL-------   80 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~-------   80 (355)
                      ..+.++|+++|+.++|||||+++|++...                    +.+..+..+  |+...+....+..       
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~--------------------~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y   66 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWT--------------------DTHSEELRRGITIKIGFADAEIRRCPNCGRY   66 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCC--------------------C--CGGGGSCSSSCCEEEEEEEEECTTTCCE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCcc--------------------ccChhhhcCCcEEEEeeeeeecccccccccc
Confidence            45679999999999999999999986321                    111122222  2322222211110       


Q ss_pred             ------c--C----cEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         81 ------E--D----RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        81 ------~--~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                            +  +    ....+.+|||||++.|...+...+..+|++|+|+|+++.
T Consensus        67 ~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g  119 (410)
T 1kk1_A           67 STSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP  119 (410)
T ss_dssp             ESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred             cccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence                  1  1    136899999999999988888888899999999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.71  E-value=1.8e-16  Score=157.28  Aligned_cols=135  Identities=18%  Similarity=0.148  Sum_probs=85.2

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCC-CCccccccceeeeeeeeeecCcEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      .....+|+++|++|+|||||+++|+...........+..++..      ..+ ..+..+.+  +.......+......++
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~------~D~~~~e~~~gi--Ti~~~~~~~~~~~~~i~   78 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ------MDWMEQEQDRGI--TITSAATTAAWEGHRVN   78 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------------CCSEEEEEETTEEEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcee------cccchhhhhcCc--eEeeeeEEEEECCeeEE
Confidence            3456899999999999999999999632110000001000000      111 11111111  11111222233357899


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +|||||+.+|...+..+++.+|++++|+|+++..+++....|.. +..                                
T Consensus        79 liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--------------------------------  125 (693)
T 2xex_A           79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--------------------------------  125 (693)
T ss_dssp             EECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--------------------------------
T ss_pred             EEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--------------------------------
Confidence            99999999999999999999999999999999888777666643 322                                


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDK  197 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~  197 (355)
                                  .++|+++|+||+|+...
T Consensus       126 ------------~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A          126 ------------YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             ------------TTCCEEEEEECTTSTTC
T ss_pred             ------------cCCCEEEEEECCCcccc
Confidence                        27899999999998653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.70  E-value=8.3e-16  Score=151.89  Aligned_cols=262  Identities=14%  Similarity=0.076  Sum_probs=139.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      +..+|+++|+.|+|||||+++|++........+++..+...      ..+.. +.  ..++.+......+.+....+++|
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~------~d~~~~e~--~~giti~~~~~~~~~~~~~~nli   79 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTT------TDYTPEAK--LHRTTVRTGVAPLLFRGHRVFLL   79 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCS------SCCSHHHH--HTTSCCSCEEEEEEETTEEEEEE
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCccc------ccCCHHHH--hcCCeEEecceEEeeCCEEEEEE
Confidence            45789999999999999999999755432222222111000      00100 11  12233333344444456789999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||+.+|...+..+++.+|++++|+|+.+....+.. .++..+..                                  
T Consensus        80 DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----------------------------------  124 (665)
T 2dy1_A           80 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----------------------------------  124 (665)
T ss_dssp             ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----------------------------------
T ss_pred             eCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----------------------------------
Confidence            9999999999999999999999999998876554433 33333332                                  


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccC---eEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN---VMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~---~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                .++|+++++||+|+. ..  ......++...++   .....+++  +.+.    ..+.|......+    
T Consensus       125 ----------~~ip~ilv~NKiD~~-~~--~~~~~~~l~~~l~~~~~~~~Pi~~--~~~~----~g~~d~~~~~~~----  181 (665)
T 2dy1_A          125 ----------LGLPRMVVVTKLDKG-GD--YYALLEDLRSTLGPILPIDLPLYE--GGKW----VGLIDVFHGKAY----  181 (665)
T ss_dssp             ----------TTCCEEEEEECGGGC-CC--HHHHHHHHHHHHCSEEECEEEEEE--TTEE----EEEEETTTTEEE----
T ss_pred             ----------ccCCEEEEecCCchh-hh--HHHHHHHHHHHhCCcceEEeeecC--CCcc----cchhhhhhhhee----
Confidence                      278999999999986 22  2333444444433   11233333  2222    223333221111    


Q ss_pred             cccccCCcEEEEEEeCCCcccHH-HHHHHHHHHHhhcCC-Cce-EEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEec
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFH-QTSKWIDDVRTERGS-DVI-IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS  324 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~-~~~~~~~~i~~~~~~-~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  324 (355)
                        ++... . .-..+.  +..+. ....+...+.+...+ +-. +--.+...++ +.+.+.............+|++++|
T Consensus       182 --~~~~g-~-~~~~~~--~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l-~~~~~~~~~~~~~~~~~~~pv~~~S  254 (665)
T 2dy1_A          182 --RYENG-E-EREAEV--PPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEV-TGEALEKAFHEAVRRGLLYPVALAS  254 (665)
T ss_dssp             --EEETT-E-EEEECC--CGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-CHHHHHHHHHHHHHTTSCEEEEECB
T ss_pred             --ecCCC-c-eeEecC--CHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCC-CHHHHHHHHHHHHHhCCeeEEEEee
Confidence              11111 1 111222  22222 223333333322100 000 0000000011 1111111222223333447999999


Q ss_pred             CCCCCCHHHHHHHHHHHcCCCC
Q psy15725        325 AKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       325 A~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      |++|.||+++|++|.+.+|.+.
T Consensus       255 A~~~~Gv~~Ll~~i~~~lp~p~  276 (665)
T 2dy1_A          255 GEREIGVLPLLELILEALPSPT  276 (665)
T ss_dssp             TTTTBSHHHHHHHHHHHSCCHH
T ss_pred             cccCcCHHHHHHHHHHhCCCcc
Confidence            9999999999999999999764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.70  E-value=2e-17  Score=156.20  Aligned_cols=151  Identities=19%  Similarity=0.181  Sum_probs=101.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||+|+|++......                     + ..+++..+.....+..++.  .+.+||
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~---------------------~-~~~gtT~d~~~~~~~~~~~--~~~l~D  229 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIV---------------------S-NVAGTTRDAVDTSFTYNQQ--EFVIVD  229 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEE---------------------C----------CCEEEEETTE--EEEETT
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceee---------------------c-CCCCceeeeeEEEEEECCe--EEEEEE
Confidence            468999999999999999999998543100                     0 1112222333334444443  589999


Q ss_pred             cCCcc----------ccccccc-ccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         92 TAGQE----------RFRSLIP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        92 ~~g~~----------~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      |||+.          .|..++. .+++.+|++++|+|++++.+++.. .|...+..                        
T Consensus       230 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~------------------------  284 (436)
T 2hjg_A          230 TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE------------------------  284 (436)
T ss_dssp             HHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH------------------------
T ss_pred             CCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH------------------------
Confidence            99983          3333332 467889999999999998888775 46655542                        


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhh-----hhhhhccCeEEEEeeeeeccccceEE
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG-----ERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~-----~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                          .+.|+++|+||+|+.+.+....++.     ..+....+.+++++|+.++.+++.++
T Consensus       285 --------------------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~  340 (436)
T 2hjg_A          285 --------------------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM  340 (436)
T ss_dssp             --------------------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred             --------------------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHH
Confidence                                2799999999999876544332222     22333346799999999999988754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.69  E-value=9.8e-17  Score=142.20  Aligned_cols=88  Identities=10%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH--HHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                      .+|+++++++.+...-......+++.+..    ++|+++|+||+|+.+......  ..........+++++++||+++.|
T Consensus       115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~  190 (274)
T 3t5d_A          115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE  190 (274)
T ss_dssp             CCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-------
T ss_pred             ceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChh
Confidence            36788888866543221222234444433    799999999999865433221  223344456788999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q psy15725        331 VKQLFRRVAAALPG  344 (355)
Q Consensus       331 v~~l~~~l~~~i~~  344 (355)
                      +++++++|.+.+|-
T Consensus       191 ~~~l~~~l~~~~p~  204 (274)
T 3t5d_A          191 ENKLVKKIKDRLPL  204 (274)
T ss_dssp             ----CHHHHHTCSE
T ss_pred             HHHHHHHHhcCCCc
Confidence            99999999998873

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.69  E-value=4.7e-17  Score=156.93  Aligned_cols=163  Identities=15%  Similarity=0.110  Sum_probs=102.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.-||+|+|+.++|||||..+|+...-.-...+.+.+++..-.+++ +....+..  .|++.......+.+++..++++
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~-D~~~~Ere--RGITI~s~~~~~~~~~~~iNlI  105 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATS-DWMAMERE--RGISVTTSVMQFPYRDRVVNLL  105 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC-----------------------CTTTEEEEEETTEEEEEE
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCcccccccc-CChHHHHH--CCCcEeeceEEEEECCEEEEEE
Confidence            46789999999999999999999874321111111111111100111 11122222  2344444555566677899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ||||+.+|.......++.+|++|+|+|+.+.-..+...-|....+                                   
T Consensus       106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~-----------------------------------  150 (548)
T 3vqt_A          106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM-----------------------------------  150 (548)
T ss_dssp             CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH-----------------------------------
T ss_pred             eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH-----------------------------------
Confidence            999999999999999999999999999999877777777754433                                   


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeee
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  223 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~  223 (355)
                                .++|+++++||.|.....  ......++...++.....+....
T Consensus       151 ----------~~lp~i~fINK~Dr~~ad--~~~~~~~i~~~l~~~~~p~~~Pi  191 (548)
T 3vqt_A          151 ----------RATPVMTFVNKMDREALH--PLDVMADIEQHLQIECAPMTWPI  191 (548)
T ss_dssp             ----------TTCCEEEEEECTTSCCCC--HHHHHHHHHHHHTSEEEESEEEE
T ss_pred             ----------hCCceEEEEecccchhcc--hhHhhhhhhhhcCCceEeEEeee
Confidence                      389999999999986543  12333344445555555554443

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.69  E-value=8.9e-17  Score=149.83  Aligned_cols=108  Identities=11%  Similarity=0.067  Sum_probs=67.3

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|+.++|||||+++|++.....       +...+......+....+...  +.+.......++.....+.+||
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~-------g~~~~~~~~~~d~~~~e~~~--giTi~~~~~~~~~~~~~~~iiD   72 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEG-------GGAKFKKYEEIDNAPEERAR--GITINAAHVEYSTAARHYAHTD   72 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHT-------TSBCCCCHHHHHSCCEEEET--TEEEECEEEEEECSSCEEEEEE
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhc-------CccccchhhhhhcCHHHHhc--CcEEEeeeEEeccCCeEEEEEE
Confidence            46899999999999999999998742000       00000000000011111111  2222222333444556899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS  128 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~  128 (355)
                      |||+++|...+..+++.+|++|+|+|+++....+...
T Consensus        73 tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e  109 (397)
T 1d2e_A           73 CPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTRE  109 (397)
T ss_dssp             CSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHH
T ss_pred             CCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHH
Confidence            9999999888888899999999999999865444333

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.69  E-value=1.1e-18  Score=157.36  Aligned_cols=117  Identities=21%  Similarity=0.297  Sum_probs=95.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~  296 (355)
                      +.+.+.+||++|++.++.+|..++.+++++|+|+|++          +..++++...|+..+.... ..++|++|++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            4578999999999999999999999999999999998          7788888888888876643 3789999999999


Q ss_pred             CCCCcc---------------cCCHHHHHHHHhh---------------------------cCcEEEEecCCCCCCHHHH
Q psy15725        297 DLSDKR---------------QVSTEEGERKAKE---------------------------LNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       297 Dl~~~~---------------~v~~~~~~~~~~~---------------------------~~~~~~~~SA~~~~gv~~l  334 (355)
                      |+...+               ....+++..++..                           ..+.++++||+++.||+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            984321               1234555444322                           2378999999999999999


Q ss_pred             HHHHHHHcCC
Q psy15725        335 FRRVAAALPG  344 (355)
Q Consensus       335 ~~~l~~~i~~  344 (355)
                      |+.+.+.|..
T Consensus       319 F~~v~~~Il~  328 (340)
T 4fid_A          319 FMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.68  E-value=2.3e-17  Score=139.11  Aligned_cols=118  Identities=41%  Similarity=0.678  Sum_probs=96.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|++.+..++..++..+|++++|+|+++..+++.+..|+..+......++|+++|+||+|+.+.+.+...
T Consensus        80 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~  159 (199)
T 3l0i_B           80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT  159 (199)
T ss_dssp             EEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSC
T ss_pred             EEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHH
Confidence            45788999999999999999999999999999999999999999999999997766568999999999999877777666


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +...+++..+++++++||++|.||+++|++|.+.+.++
T Consensus       160 ~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          160 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             C-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred             HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            77778888889999999999999999999999988754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.68  E-value=6.5e-17  Score=151.29  Aligned_cols=116  Identities=14%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeec-ccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRF-MYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ...+.++|+++|++|+|||||+++|++........      ..+. .+ ..+....+  .+.+.++......++.....+
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~------~~~~-~~~~~d~~~~e--~~~GiTi~~~~~~~~~~~~~~   77 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPN------VEVK-DYGDIDKAPEE--RARGITINTAHVEYETAKRHY   77 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTT------SCCC-CHHHHSCSHHH--HHHTCCCSCEEEEEECSSCEE
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCcc------cccc-chhhccCCHHH--HHcCCCEEeeeeEeccCCeEE
Confidence            34567999999999999999999998731000000      0000 00 00001111  122222222333444455689


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      .+|||||+++|...+..+++.+|++|+|+|+++....+ ...|+..+
T Consensus        78 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~  123 (405)
T 2c78_A           78 SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLA  123 (405)
T ss_dssp             EEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHH
Confidence            99999999999888888899999999999998865433 33444444

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.68  E-value=4.2e-17  Score=155.83  Aligned_cols=179  Identities=18%  Similarity=0.231  Sum_probs=99.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcC--CCCCceeee------ecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDS--FDNTYQATI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED   82 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   82 (355)
                      .+.+||+++|++|+|||||+++|++..  +...+.+++      .|+..+...+..+....+..+  |+++......++.
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~--GiTi~~~~~~~~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER--GVTVSICTSHFST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------C--CSSCCCCEEEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhc--CcceEeeeEEEec
Confidence            356999999999999999999998762  111111110      111111111111112222222  2233333334445


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhH--HHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT--SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      ....+.+|||||+++|...+..+++.+|++|+|||+++..++..+  ..+..+.....                      
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~----------------------  166 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA----------------------  166 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH----------------------
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH----------------------
Confidence            567899999999999999999999999999999999997554321  11111111000                      


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhh----hhhhcc-----CeEEEEeeeeeccccceE
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAKEL-----NVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~----~~~~~~-----~~~~~~~sa~~~~~v~~i  230 (355)
                                       ......|+++|+||+|+.+.+....++..    .+....     ..+++++|+.++.|+.++
T Consensus       167 -----------------~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          167 -----------------SSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             -----------------HHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             -----------------HHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence                             00112469999999998653322222222    222211     578999999999988753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.67  E-value=5e-17  Score=154.34  Aligned_cols=154  Identities=20%  Similarity=0.213  Sum_probs=103.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...+||+++|++|||||||+|+|++.....                     . ...+++..+.....+..++  ..+.+|
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~---------------------~-~~~~gtt~~~~~~~~~~~~--~~~~l~  248 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI---------------------V-SNVAGTTRDAVDTSFTYNQ--QEFVIV  248 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEE---------------------E-CC------CTTSEEEEETT--EEEEET
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccc---------------------c-CCCCCeEEEEEEEEEEECC--ceEEEE
Confidence            457899999999999999999999743100                     0 0111222233333344444  378999


Q ss_pred             ecCC----------ccccccccc-ccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         91 DTAG----------QERFRSLIP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        91 D~~g----------~~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      ||||          ++.|...+. .+++.+|++++|+|+++..+ +....|...+..                       
T Consensus       249 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~-----------------------  304 (456)
T 4dcu_A          249 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE-----------------------  304 (456)
T ss_dssp             TGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH-----------------------
T ss_pred             ECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH-----------------------
Confidence            9999          566655554 36789999999999998543 223345444432                       


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhcc-----CeEEEEeeeeeccccceEEEE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-----NVMFIETSAKAGYNVKQVRLQ  233 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~-----~~~~~~~sa~~~~~v~~i~~~  233 (355)
                                           .++|+++|+||+|+.+.+....++..+.+...     ..+++++||.++.++++++..
T Consensus       305 ---------------------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~  362 (456)
T 4dcu_A          305 ---------------------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPA  362 (456)
T ss_dssp             ---------------------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHH
T ss_pred             ---------------------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHH
Confidence                                 27999999999999766555555544444432     579999999999998876543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.66  E-value=2.4e-16  Score=144.98  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=62.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++++|||||+++|+.      .                       ..|+...+  ..  +......+.+|||||
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~------~-----------------------giTi~~~~--~~--~~~~~~~i~iiDtPG   69 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK------K-----------------------GTSSDITM--YN--NDKEGRNMVFVDAHS   69 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE------E-----------------------EEESSSEE--EE--ECSSSSEEEEEECTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh------C-----------------------CEEEEeeE--EE--EecCCeEEEEEECCC
Confidence            999999999999999999972      0                       11222222  12  233345699999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +++|...+...++.+|++++|+| ++ ..+.+...|...+.
T Consensus        70 h~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~  108 (370)
T 2elf_A           70 YPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALD  108 (370)
T ss_dssp             TTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHH
Confidence            99998888888999999999999 43 34445555555443

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.66  E-value=3.5e-16  Score=147.48  Aligned_cols=179  Identities=15%  Similarity=0.197  Sum_probs=107.2

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCcee--ee------ecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE   81 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   81 (355)
                      ..+.++|+++|++++|||||+++|++..-.-....  .+      .++..+-..+..+....+..+++..+.....+.  
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~--   91 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE--   91 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe--
Confidence            34679999999999999999999976431110000  00      011111111112333333334455554444443  


Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcch---hhhHHHHHHHHhhhcCCceEEeecccccccccccc
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---FHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLS  158 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
                      .....+.+|||||+++|...+...++.+|++|+|+|+++...   |+....+.+.+...                     
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~---------------------  150 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA---------------------  150 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH---------------------
Confidence            344589999999999999999999999999999999998532   22111111111110                     


Q ss_pred             ccccCccccCccccccccccCCCccE-EEEEeecCCCCccc------ceehhhhhhhhhcc------CeEEEEeeeeecc
Q psy15725        159 FHHANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKR------QVSTEEGERKAKEL------NVMFIETSAKAGY  225 (355)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~------~v~~~~~~~~~~~~------~~~~~~~sa~~~~  225 (355)
                                          ...++| +++++||+|+....      .....+...+....      ..+++.+|+.++.
T Consensus       151 --------------------~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~  210 (439)
T 3j2k_7          151 --------------------KTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGA  210 (439)
T ss_pred             --------------------HHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCc
Confidence                                012566 99999999985321      01112222333332      4579999999999


Q ss_pred             ccceEE
Q psy15725        226 NVKQVR  231 (355)
Q Consensus       226 ~v~~i~  231 (355)
                      |+..+.
T Consensus       211 ni~~l~  216 (439)
T 3j2k_7          211 NLKEQS  216 (439)
T ss_pred             cccccc
Confidence            988743

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.64  E-value=5.3e-16  Score=134.66  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=58.6

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      .....+||+++|++|||||||+|+|++..+.....+.                     .++........+.+++  ..+.
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~---------------------~~~t~~~~~~~~~~~~--~~i~   81 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAA---------------------KSITKKCEKRSSSWKE--TELV   81 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC----------------------------CCSCEEEEEEETT--EEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCC---------------------CceeeeEEEEEEEeCC--ceEE
Confidence            3456799999999999999999999996543322111                     0122222233333333  4789


Q ss_pred             EEecCCcc-----------cccccccccccCccEEEEEEECCCcch
Q psy15725         89 LWDTAGQE-----------RFRSLIPSYIRDSTVAVVVYDITNANS  123 (355)
Q Consensus        89 i~D~~g~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~s  123 (355)
                      +|||||..           .+.......++.+|++++|+|+++...
T Consensus        82 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~  127 (239)
T 3lxx_A           82 VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE  127 (239)
T ss_dssp             EEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS
T ss_pred             EEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH
Confidence            99999943           344445555678899999999986433

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.63  E-value=2.2e-15  Score=138.29  Aligned_cols=93  Identities=20%  Similarity=0.114  Sum_probs=55.5

Q ss_pred             CcEEEEEEeCCCcc--cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc-CCHHHHHHHHhhc---CcEEEEecCCC
Q psy15725        254 STVAVVVYDITNAN--SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ-VSTEEGERKAKEL---NVMFIETSAKA  327 (355)
Q Consensus       254 ~~~vi~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~---~~~~~~~SA~~  327 (355)
                      +|.+++|+|++++.  ..+.+..|.+.+......++|+++|+||+|+.+... .....+..++...   +.+++++||++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            45556666665544  233333344334333335678888888888754321 0001121222332   34789999999


Q ss_pred             CCCHHHHHHHHHHHcCCCC
Q psy15725        328 GYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~~  346 (355)
                      +.|+++++++|.+.+....
T Consensus       338 g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             TBSHHHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHhcccC
Confidence            9999999999998876543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.63  E-value=7.2e-16  Score=156.35  Aligned_cols=106  Identities=14%  Similarity=0.095  Sum_probs=65.8

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeec-ccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRF-MYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      ...+.++|+++|+.++|||||+++|++.....       +...+. .+ ..+....  ..+.|+++......++.....+
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~-------G~a~f~-~~a~lD~~~~--ErerGITIdva~v~f~~~~~kI  361 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKT-------YGGAAR-AFDQIDNAPE--EKARGITINTSHVEYDTPTRHY  361 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHH-------SCC------------------------CCSCEEEECSSCEE
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccc-------cccccc-cccccccccc--cccCceeEEEEEEEEcCCCEEE
Confidence            34567999999999999999999998741000       000000 00 0000111  1223333333334455556789


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchh
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF  124 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~  124 (355)
                      .+|||||+++|...+...++.+|++|+|||+++....
T Consensus       362 ~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~  398 (1289)
T 3avx_A          362 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP  398 (1289)
T ss_dssp             EEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT
T ss_pred             EEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH
Confidence            9999999999988888889999999999999886433

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.63  E-value=1e-15  Score=144.40  Aligned_cols=174  Identities=20%  Similarity=0.227  Sum_probs=102.2

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCC--CCCceeeee------ccc--ceeeecccCCCCCccccccceeeeeeeeee
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIV------GKT--SLITRFMYDSFDNTYQATIGIDFLSKTMYL   80 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~--~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~   80 (355)
                      .+.+||+++|+.++|||||+++|++...  .......+.      +.+  .+-.....+....+....+..+.  ....+
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~--~~~~~   99 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDV--AYRYF   99 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCC--EEEEE
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEe--eeeEe
Confidence            4569999999999999999999998641  111000000      000  00000000000011111222221  12223


Q ss_pred             cCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         81 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        81 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      ......+.+|||||+++|...+..++..+|++|+|+|+++....+ ...|+..+...                       
T Consensus       100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-----------------------  155 (434)
T 1zun_B          100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-----------------------  155 (434)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-----------------------
T ss_pred             ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-----------------------
Confidence            344568999999999999988888999999999999999865333 23333333221                       


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCccc--ce--ehhhhhhhhhccC-----eEEEEeeeeeccccceE
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR--QV--STEEGERKAKELN-----VMFIETSAKAGYNVKQV  230 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~v--~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~i  230 (355)
                                          .-.|+++|+||+|+.+..  ..  ...+...++...+     .+++++|+.++.++..+
T Consensus       156 --------------------~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          156 --------------------GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             --------------------TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             --------------------CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence                                123699999999996521  11  1233445555555     78999999999987753

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.62  E-value=1.3e-16  Score=150.54  Aligned_cols=179  Identities=17%  Similarity=0.290  Sum_probs=103.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhc--CCCCCceeee------ecccceeeecccCCCCCccccccceeeeeeeeeecCc
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYD--SFDNTYQATI------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR   83 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   83 (355)
                      +.+||+++|+.|+|||||+++|++.  .+.......+      .|...+-.....+....+..+.+..+...  ..++..
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~--~~~~~~   82 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF--MRFETK   82 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE--EEEecC
Confidence            5689999999999999999999874  2221100000      00000000000000011111222222222  223444


Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      ...+.+|||||+++|...+..+++.+|++|+|||+++ .+|+....|..+.+...                         
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~-------------------------  136 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHI-------------------------  136 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHH-------------------------
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHH-------------------------
Confidence            5689999999999999999999999999999999999 67776554443332210                         


Q ss_pred             ccccCccccccccccCCCcc-EEEEEeecCCCCccc------ceehhhhhhhhhccC-----eEEEEeeeeeccccceE
Q psy15725        164 SFHQTSKWIDDVRTERGSDV-IIMLVGNKTDLSDKR------QVSTEEGERKAKELN-----VMFIETSAKAGYNVKQV  230 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~~------~v~~~~~~~~~~~~~-----~~~~~~sa~~~~~v~~i  230 (355)
                                  ......++ |+++++||+|+.+..      .....+...++...+     .+++++|+.++.++.+.
T Consensus       137 ------------~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          137 ------------ILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             ------------HHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             ------------HHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence                        00001133 589999999986521      111233444444443     68999999999887643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.62  E-value=2.1e-15  Score=132.73  Aligned_cols=102  Identities=14%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.++|+++|++|||||||+|+|++......                     ..+.++ ........+..  ....+.+|
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~---------------------~~~~~~-t~~~~~~~~~~--~~~~l~li   89 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV---------------------SPFQAE-GLRPVMVSRTM--GGFTINII   89 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC---------------------CSSCC--CCCCEEEEEEE--TTEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCccc---------------------CCCCCc-ceeeEEEEEEE--CCeeEEEE
Confidence            4679999999999999999999998653111                     111111 11112222223  33589999


Q ss_pred             ecCCccccccccccccc---------CccEEEEEEECCCcchhhhH-HHHHHHHhhh
Q psy15725         91 DTAGQERFRSLIPSYIR---------DSTVAVVVYDITNANSFHQT-SKWIDDVRTE  137 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~---------~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~  137 (355)
                      ||||+.++......+++         .+|++++|++++... +... ..|++.+...
T Consensus        90 DTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~  145 (262)
T 3def_A           90 DTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQT  145 (262)
T ss_dssp             ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHH
T ss_pred             ECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHH
Confidence            99999888766555554         789999999998755 5443 4677777643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.62  E-value=9.4e-16  Score=127.08  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=91.6

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ...+.+||++|.+.+..++..++..+|++++|+|+++..+++.+..|+..+.... ..++|+++|+||+|+.+.  ....
T Consensus        64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~  141 (181)
T 2h17_A           64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVA  141 (181)
T ss_dssp             TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHH
Confidence            4778999999999999999999999999999999999999999988888876542 268999999999999643  2233


Q ss_pred             HHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        308 EGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       308 ~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      +.....     ...+++++++||++|.||+++|++|.+.+
T Consensus       142 ~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l  181 (181)
T 2h17_A          142 EISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  181 (181)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred             HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence            333322     23457999999999999999999998653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.62  E-value=3.6e-16  Score=148.55  Aligned_cols=178  Identities=17%  Similarity=0.250  Sum_probs=90.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcC--CCCC----cee--eeecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDS--FDNT----YQA--TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED   82 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   82 (355)
                      .+.++|+++|+.++|||||+++|+...  +...    +..  ...|.+.+...+..+....+....+.++.....+..  
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~--  118 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--  118 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence            356899999999999999999998632  2110    000  000111111011111111111122222222223333  


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCc---chhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA---NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      ....+.+|||||+++|...+...++.+|++|+|||+++.   .+|+...+|.+.+...                      
T Consensus       119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~----------------------  176 (467)
T 1r5b_A          119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA----------------------  176 (467)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH----------------------
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH----------------------
Confidence            346899999999999999999999999999999999986   4555433343333211                      


Q ss_pred             cccCccccCccccccccccCCCccE-EEEEeecCCCCccc------ceehhhhhhhhhcc-------CeEEEEeeeeecc
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKR------QVSTEEGERKAKEL-------NVMFIETSAKAGY  225 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~------~v~~~~~~~~~~~~-------~~~~~~~sa~~~~  225 (355)
                                         ...++| +++++||+|+....      .....+...+....       ..+++++|+.++.
T Consensus       177 -------------------~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~  237 (467)
T 1r5b_A          177 -------------------RTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ  237 (467)
T ss_dssp             -------------------HHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB
T ss_pred             -------------------HHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccc
Confidence                               012677 99999999985411      11112333444333       4689999999999


Q ss_pred             ccceEE
Q psy15725        226 NVKQVR  231 (355)
Q Consensus       226 ~v~~i~  231 (355)
                      ++..++
T Consensus       238 ~i~~l~  243 (467)
T 1r5b_A          238 NVKDRV  243 (467)
T ss_dssp             TTSSCC
T ss_pred             cccccc
Confidence            987643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.61  E-value=6.1e-16  Score=151.07  Aligned_cols=178  Identities=18%  Similarity=0.229  Sum_probs=101.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCce--ee------eecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--AT------IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED   82 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   82 (355)
                      .+.+||+++|++|+|||||+++|++....-...  ..      -.|+..+-..+..+.......+  |+++......+..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~--GiTid~~~~~~~~  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERER--GVTVSICTSHFST  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHT--TTCCSCSCCEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhC--CeeEeeeeEEEec
Confidence            457999999999999999999999753211100  00      0000000000000000011112  2222223333444


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc---hhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      ....+.+|||||+++|...+..+++.+|++|+|+|+++..   +|.....+.+.+....                     
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~---------------------  301 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS---------------------  301 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH---------------------
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH---------------------
Confidence            5568999999999999999999999999999999998742   2211111111111110                     


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccceeh----hhhhhhhhcc-----CeEEEEeeeeeccccceE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST----EEGERKAKEL-----NVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~----~~~~~~~~~~-----~~~~~~~sa~~~~~v~~i  230 (355)
                                         ...-.|+++|+||+|+.+......    .+...+....     ..+++.+|+.++.|+..+
T Consensus       302 -------------------~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          302 -------------------SLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             -------------------TTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             -------------------HcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence                               011246999999999875322111    1222222222     468999999999998754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.61  E-value=5.9e-16  Score=146.79  Aligned_cols=149  Identities=19%  Similarity=0.232  Sum_probs=97.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +..+|+++|+.++|||||+++|....+...+.+                       ++..+.....+..++  ..+.+||
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~-----------------------GIT~~i~~~~v~~~~--~~i~~iD   57 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG-----------------------GITQHIGAYHVETEN--GMITFLD   57 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC-----------------------CCCCCSSCCCCCTTS--SCCCEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCC-----------------------CeeEeEEEEEEEECC--EEEEEEE
Confidence            456899999999999999999988543322211                       111111111122222  3688999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      |||++.|...+...+..+|++++|||+++....+....|. .+..                                   
T Consensus        58 TPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~-~~~~-----------------------------------  101 (501)
T 1zo1_I           58 TPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ-HAKA-----------------------------------  101 (501)
T ss_dssp             CCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH-HHHH-----------------------------------
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH-HHHh-----------------------------------
Confidence            9999999999999999999999999998854333333221 2211                                   


Q ss_pred             cccccccCCCccEEEEEeecCCCCccc--ceehh--hhhhhhhccC--eEEEEeeeeeccccceE
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKR--QVSTE--EGERKAKELN--VMFIETSAKAGYNVKQV  230 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~--~v~~~--~~~~~~~~~~--~~~~~~sa~~~~~v~~i  230 (355)
                               .++|+++++||+|+.+..  .+...  +...++..++  .+++++|+.++.+++.+
T Consensus       102 ---------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL  157 (501)
T 1zo1_I          102 ---------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL  157 (501)
T ss_dssp             ---------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred             ---------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence                     278999999999986421  11111  1111222232  68999999999887654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.61  E-value=2.5e-16  Score=144.72  Aligned_cols=155  Identities=18%  Similarity=0.291  Sum_probs=85.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCC-CCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ..++|+|+|++|+|||||+++|++... ...+.+.               ......+|++..+....+..++....+.+|
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~---------------~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~  100 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPG---------------AAEKIERTVQIEASTVEIEERGVKLRLTVV  100 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC------------------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccC---------------CCcccCCceeEEEEEEEeecCCcccceEEE
Confidence            458999999999999999999876432 1111110               011123455555544444455566789999


Q ss_pred             ecCCc-------cccccccc-------ccccCccEE-----------EEEEECCC-cchhhhHH-HHHHHHhhhcCCceE
Q psy15725         91 DTAGQ-------ERFRSLIP-------SYIRDSTVA-----------VVVYDITN-ANSFHQTS-KWIDDVRTERGSDVI  143 (355)
Q Consensus        91 D~~g~-------~~~~~~~~-------~~~~~~d~i-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~~  143 (355)
                      ||||.       +.|..++.       .+++.++++           +++|++++ ..++..+. .|++.+.        
T Consensus       101 DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~--------  172 (361)
T 2qag_A          101 DTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH--------  172 (361)
T ss_dssp             C--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC--------
T ss_pred             EeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc--------
Confidence            99998       66776665       555554433           35555554 45665554 3544431        


Q ss_pred             EeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceeh--hhhhhhhhccCeEEEEeee
Q psy15725        144 IMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSA  221 (355)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~sa  221 (355)
                                                           .++|+|+|+||+|+...+.+..  .+...++...+++++++|+
T Consensus       173 -------------------------------------~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa  215 (361)
T 2qag_A          173 -------------------------------------NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPD  215 (361)
T ss_dssp             -------------------------------------S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC-
T ss_pred             -------------------------------------cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCC
Confidence                                                 3789999999999977665544  4566677777889999999


Q ss_pred             eeccc
Q psy15725        222 KAGYN  226 (355)
Q Consensus       222 ~~~~~  226 (355)
                      ..+.+
T Consensus       216 ~~~~~  220 (361)
T 2qag_A          216 AESDE  220 (361)
T ss_dssp             -----
T ss_pred             cCCCc
Confidence            88776

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.59  E-value=1.2e-15  Score=144.67  Aligned_cols=173  Identities=18%  Similarity=0.240  Sum_probs=100.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcC--CCCCc----ee--eeecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDS--FDNTY----QA--TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED   82 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~--~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   82 (355)
                      .+.++|+++|++++|||||+++|++..  +....    ..  .-.|...+-..+..+....+..+.+.++.  ....++.
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~--~~~~~~~   82 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDI--ALWKFET   82 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSC--SCEEEEC
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEE--EEEEEec
Confidence            367999999999999999999998742  11100    00  00000000000000000000011111121  2223344


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc---hhh---hHHHHHHHHhhhcCCceEEeecccccccccc
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFH---QTSKWIDDVRTERGSDVIIMLVGSIETNFTH  156 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
                      ....+.+|||||+++|...+..+++.+|++|+|+|+++..   +|+   +...+...+..                    
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--------------------  142 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--------------------  142 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--------------------
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--------------------
Confidence            5568999999999999999999999999999999999752   342   11122222211                    


Q ss_pred             ccccccCccccCccccccccccCCCccE-EEEEeecCCCCc--ccc--eehhhhhhhhhccC-----eEEEEeeeeeccc
Q psy15725        157 LSFHHANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSD--KRQ--VSTEEGERKAKELN-----VMFIETSAKAGYN  226 (355)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~--~~~--v~~~~~~~~~~~~~-----~~~~~~sa~~~~~  226 (355)
                                              .++| +++|+||+|+.+  +..  ....+...++...+     .+++++|+.++.+
T Consensus       143 ------------------------~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~n  198 (458)
T 1f60_A          143 ------------------------LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDN  198 (458)
T ss_dssp             ------------------------TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBT
T ss_pred             ------------------------cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcC
Confidence                                    1554 999999999863  111  11123333434333     6899999999998


Q ss_pred             cce
Q psy15725        227 VKQ  229 (355)
Q Consensus       227 v~~  229 (355)
                      +.+
T Consensus       199 v~~  201 (458)
T 1f60_A          199 MIE  201 (458)
T ss_dssp             TTB
T ss_pred             ccc
Confidence            864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.59  E-value=5.4e-15  Score=129.92  Aligned_cols=86  Identities=8%  Similarity=0.137  Sum_probs=57.5

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCC-CCCceeeeecccceeeecccCCCCCccccc-cceeeeeeeeeecCcEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIVGKTSLITRFMYDSFDNTYQAT-IGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~   87 (355)
                      ..+.++|+++|++|||||||+++|++... ...+                       .++ +........+..+  ...+
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~-----------------------~~~~~t~~~~~~~~~~~--~~~i   73 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL-----------------------GSQTLTKTCSKSQGSWG--NREI   73 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT-----------------------TSCCCCCSCEEEEEEET--TEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC-----------------------CCCceeeeeEEEEEEeC--CCEE
Confidence            34579999999999999999999998552 1111                       111 1122222233333  3579


Q ss_pred             EEEecCCccccccccc-----------ccccCccEEEEEEECCC
Q psy15725         88 QLWDTAGQERFRSLIP-----------SYIRDSTVAVVVYDITN  120 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~-----------~~~~~~d~ii~v~d~~~  120 (355)
                      .+|||||+..+.....           .+++.+|++++|||+++
T Consensus        74 ~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~  117 (260)
T 2xtp_A           74 VIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR  117 (260)
T ss_dssp             EEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC
T ss_pred             EEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence            9999999876543222           25688999999999986

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.59  E-value=5.8e-15  Score=125.23  Aligned_cols=87  Identities=15%  Similarity=0.112  Sum_probs=55.7

Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc--CCHHHHHHHHhhc--CcEEEEecCCCCCC
Q psy15725        255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--VSTEEGERKAKEL--NVMFIETSAKAGYN  330 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~~~~--~~~~~~~SA~~~~g  330 (355)
                      +++++++|+++..+..+. .....+..   .++|+++++||+|+.+..+  .....+..++...  .+.++++||+++.|
T Consensus       110 ~~~~~v~d~~~~~~~~~~-~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~  185 (210)
T 1pui_A          110 QGLVVLMDIRHPLKDLDQ-QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQG  185 (210)
T ss_dssp             EEEEEEEETTSCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBS
T ss_pred             cEEEEEEECCCCCchhHH-HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCC
Confidence            445677777665543321 11111222   5789999999999865321  1123444444444  35899999999999


Q ss_pred             HHHHHHHHHHHcCCC
Q psy15725        331 VKQLFRRVAAALPGM  345 (355)
Q Consensus       331 v~~l~~~l~~~i~~~  345 (355)
                      +++++++|.+.+...
T Consensus       186 ~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          186 VDKLRQKLDTWFSEM  200 (210)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999987654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.58  E-value=3.3e-15  Score=133.96  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=65.5

Q ss_pred             EEEEEEecCCcc-------------cccccccccccCccEEE-EEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccc
Q psy15725         85 VRLQLWDTAGQE-------------RFRSLIPSYIRDSTVAV-VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSI  150 (355)
Q Consensus        85 ~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
                      ..+.+|||||..             .+...+..+++.++.++ +|+|+++..+......|.+.+.               
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---------------  189 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---------------  189 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---------------
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---------------
Confidence            479999999964             34456667777887666 7999988655544434554442               


Q ss_pred             ccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhc--cC-eEEEEeeeeecccc
Q psy15725        151 ETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE--LN-VMFIETSAKAGYNV  227 (355)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~--~~-~~~~~~sa~~~~~v  227 (355)
                                                   ..+.|+++|+||+|+.+...............  .+ .+++.+|+.++.++
T Consensus       190 -----------------------------~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi  240 (299)
T 2aka_B          190 -----------------------------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK  240 (299)
T ss_dssp             -----------------------------TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSC
T ss_pred             -----------------------------CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcccc
Confidence                                         13789999999999865433111111111111  12 46788899988887


Q ss_pred             ceEE
Q psy15725        228 KQVR  231 (355)
Q Consensus       228 ~~i~  231 (355)
                      +.++
T Consensus       241 ~~l~  244 (299)
T 2aka_B          241 KDIT  244 (299)
T ss_dssp             BCHH
T ss_pred             ccHH
Confidence            7543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.58  E-value=1.8e-15  Score=125.41  Aligned_cols=114  Identities=21%  Similarity=0.345  Sum_probs=90.2

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ...+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.  ....
T Consensus        61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~  138 (183)
T 1moz_A           61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSAS  138 (183)
T ss_dssp             TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHH
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHH
Confidence            4778999999999999999999999999999999999999999989988886653 368999999999998643  2233


Q ss_pred             HHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        308 EGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       308 ~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +.....     ...+++++++||++|.||+++|++|.+.+.+
T Consensus       139 ~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          139 EVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             HHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence            333322     2234689999999999999999999998754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.57  E-value=1.1e-14  Score=128.57  Aligned_cols=101  Identities=12%  Similarity=0.134  Sum_probs=64.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...++|+++|.+|+|||||+|+|++..+...                 +.....       +........+.....+.+|
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-----------------~~~~~~-------t~~~~~~~~~~~~~~l~ii   92 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI-----------------SPFQSE-------GPRPVMVSRSRAGFTLNII   92 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-----------------CSSSCC-------CSSCEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-----------------cCCCCc-------ceeeEEEEEeeCCeEEEEE
Confidence            3579999999999999999999998654211                 111111       1111112223344679999


Q ss_pred             ecCCcccccccccc---------cccCccEEEEEEECCCcchhhh-HHHHHHHHhh
Q psy15725         91 DTAGQERFRSLIPS---------YIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRT  136 (355)
Q Consensus        91 D~~g~~~~~~~~~~---------~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~  136 (355)
                      ||||..++......         ..+.+|++++|+|++.. ++.. ...|+..+..
T Consensus        93 DTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~  147 (270)
T 1h65_A           93 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITD  147 (270)
T ss_dssp             ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHH
T ss_pred             ECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHH
Confidence            99999776543321         13479999999999764 4544 3467777654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.56  E-value=8e-15  Score=138.48  Aligned_cols=152  Identities=22%  Similarity=0.238  Sum_probs=93.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..++|+++|++|||||||+|++++......                 +..     ++...+.....+.+++.  .+.+||
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v-----------------~~~-----~gtT~d~~~~~i~~~g~--~~~l~D  234 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALV-----------------SPI-----PGTTRDPVDDEVFIDGR--KYVFVD  234 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEE-----------------CCC-----C------CCEEEEETTE--EEEESS
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCccccc-----------------CCC-----CCCcCCceEEEEEECCE--EEEEEE
Confidence            458999999999999999999998542100                 111     11112223334445554  578999


Q ss_pred             cCCcccccccc------------cccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         92 TAGQERFRSLI------------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        92 ~~g~~~~~~~~------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      |+|...+....            ..+++.+|++++|+|+++..+.+.. .+...+..                       
T Consensus       235 t~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-----------------------  290 (439)
T 1mky_A          235 TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-----------------------  290 (439)
T ss_dssp             CSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----------------------
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----------------------
Confidence            99985433221            2356789999999999987666542 22222221                       


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhh-----hhhhhccCeEEEEeeeeeccccceEEE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG-----ERKAKELNVMFIETSAKAGYNVKQVRL  232 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~-----~~~~~~~~~~~~~~sa~~~~~v~~i~~  232 (355)
                                           .+.|+++|+||+|+.+.+.....+.     ..+......+++.+||.++.+++.++.
T Consensus       291 ---------------------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~  347 (439)
T 1mky_A          291 ---------------------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID  347 (439)
T ss_dssp             ---------------------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHH
T ss_pred             ---------------------cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHH
Confidence                                 2789999999999865443222221     223333457899999999998886543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.56  E-value=3.5e-15  Score=137.55  Aligned_cols=74  Identities=19%  Similarity=0.282  Sum_probs=64.8

Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCC----------cchhhhHHHHHHHHhhhcCCceEEeeccccccc
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETN  153 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
                      .+.+++|||+|++.|+.+|..++++++++|+|||+++          ..+|+....|++.+...                
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~----------------  279 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN----------------  279 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC----------------
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc----------------
Confidence            4789999999999999999999999999999999999          89999999999887542                


Q ss_pred             cccccccccCccccCccccccccccCCCccEEEEEeecCCCCcc
Q psy15725        154 FTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  197 (355)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  197 (355)
                                              ....++|++||+||+|+...
T Consensus       280 ------------------------~~~~~~piiLvgNK~DL~~~  299 (402)
T 1azs_C          280 ------------------------RWLRTISVILFLNKQDLLAE  299 (402)
T ss_dssp             ------------------------TTCSSCCEEEEEECHHHHHH
T ss_pred             ------------------------ccCCCCeEEEEEEChhhhhh
Confidence                                    12347999999999998543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.55  E-value=2.7e-15  Score=137.28  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=76.2

Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCC----------cchhhhHHHHHHHHhhhcCCceEEeeccccccc
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETN  153 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
                      .+.+.+|||+|++.++..|..++++++++|||||+++          ..+|.....|+..+...                
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~----------------  263 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN----------------  263 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC----------------
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc----------------
Confidence            4789999999999999999999999999999999999          77898888888877532                


Q ss_pred             cccccccccCccccCccccccccccCCCccEEEEEeecCCCCccc----------------ceehhhhhhhh--------
Q psy15725        154 FTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR----------------QVSTEEGERKA--------  209 (355)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----------------~v~~~~~~~~~--------  209 (355)
                                              ....++|++|++||+|+..++                .++.+++..++        
T Consensus       264 ------------------------~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~  319 (362)
T 1zcb_A          264 ------------------------RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKR  319 (362)
T ss_dssp             ------------------------GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTC
T ss_pred             ------------------------hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhh
Confidence                                    112479999999999985332                13444444443        


Q ss_pred             h---ccCeEEEEeeeeeccccceEE
Q psy15725        210 K---ELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       210 ~---~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      .   ...+.+.++||.++.++..++
T Consensus       320 ~~~~~~~~~~~~tSA~d~~nV~~vF  344 (362)
T 1zcb_A          320 RDQQQRPLYHHFTTAINTENIRLVF  344 (362)
T ss_dssp             SSCC--CCEEEECCTTCHHHHHHHH
T ss_pred             cccCCCceEEEEEecCCchhHHHHH
Confidence            2   335678899999988887543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.55  E-value=1.1e-14  Score=145.10  Aligned_cols=135  Identities=19%  Similarity=0.174  Sum_probs=85.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec-----CcEEE
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-----DRTVR   86 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~   86 (355)
                      +--||+|+||.++|||||..+|+...-.....+.+.+++..    + +....+....+.+......+.+.     ++.+.
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~----~-D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~   86 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAAT----T-DWMVQEQERGITITSAAVTTFWKGSRGQYDNYR   86 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-----------------------------CCEEEEEECCTTSCSCCEE
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCcc----C-CChHHHHHcCCeEEeeeEEEEeccCcCCCCCEE
Confidence            44689999999999999999998633111111112111111    1 22222333333333333333332     23689


Q ss_pred             EEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccc
Q psy15725         87 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH  166 (355)
Q Consensus        87 ~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (355)
                      ++++||||+-+|.......++-+|++|+|+|+...-..+...-|....+.                              
T Consensus        87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~------------------------------  136 (709)
T 4fn5_A           87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY------------------------------  136 (709)
T ss_dssp             EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH------------------------------
T ss_pred             EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc------------------------------
Confidence            99999999999999999999999999999999997666666666555442                              


Q ss_pred             cCccccccccccCCCccEEEEEeecCCCCc
Q psy15725        167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSD  196 (355)
Q Consensus       167 ~~~~~~~~~~~~~~~~~piilv~nK~D~~~  196 (355)
                                     ++|.++++||.|...
T Consensus       137 ---------------~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A          137 ---------------GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             ---------------TCCEEEEEECSSSTT
T ss_pred             ---------------CCCeEEEEccccccC
Confidence                           899999999999854

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.31  E-value=4.6e-16  Score=131.53  Aligned_cols=114  Identities=33%  Similarity=0.571  Sum_probs=96.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCcc----
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKR----  302 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~----  302 (355)
                      ..+.+.+||++|++.+...+..++..+|++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+..    
T Consensus        76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~  154 (204)
T 3th5_A           76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIE  154 (204)
Confidence            3466779999999999999999999999999999999999998886 7888776644 489999999999996542    


Q ss_pred             --------cCCHHHHHHHHhhcCc-EEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        303 --------QVSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       303 --------~v~~~~~~~~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                              .+...+...+++..++ +++++||++|.||+++|++|.+.+
T Consensus       155 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          155 KLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence                    4555666677777776 899999999999999999998865

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.54  E-value=1.8e-15  Score=147.29  Aligned_cols=110  Identities=23%  Similarity=0.304  Sum_probs=48.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCce--------eeeecccceeeecccCCCCCccccccceeeeeeeeeecC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--------ATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED   82 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   82 (355)
                      .+.++|+++|++|+|||||+++|++....-...        ..-.|+..+-..+..+.+..+..+++..+.....+  ..
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~--~~  252 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF--ES  252 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE--Ee
Confidence            456899999999999999999997643111000        00011111211222233333334444444444333  33


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN  122 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~  122 (355)
                      ....+.||||||+.+|...+...++.+|++|+|+|+++..
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~  292 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN  292 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECC
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc
Confidence            4468999999999999999999999999999999998753

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.53  E-value=2e-15  Score=148.43  Aligned_cols=132  Identities=15%  Similarity=0.134  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      .||+|+||.++|||||..+|+...-.-.....+.+++..+     +....+.  ..|++.......+.+++..++++|||
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~-----D~~~~Er--eRGITI~s~~~~~~~~~~~iNlIDTP   75 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRT-----DNTLLER--QRGITIQTGITSFQWENTKVNIIDTP   75 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCST-----TCSTTHH--HHSSCSSCCCCCCBCSSCBCCCEECC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCccc-----CCcHHHH--hCCCcEEeeeEEEEECCEEEEEEECC
Confidence            4799999999999999999987442222222221111110     1111122  23444455555666777889999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |+.+|...+...++.+|++++|+|+.+.-..+...-|....+                                      
T Consensus        76 GH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--------------------------------------  117 (638)
T 3j25_A           76 GHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--------------------------------------  117 (638)
T ss_dssp             CSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--------------------------------------
T ss_pred             CcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--------------------------------------
Confidence            999999999999999999999999998665555555544333                                      


Q ss_pred             cccccCCCccEEEEEeecCCCCcc
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDK  197 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~  197 (355)
                             .++|.++++||.|....
T Consensus       118 -------~~lp~i~~INKmDr~~a  134 (638)
T 3j25_A          118 -------MGIPTIFFINKIDQNGI  134 (638)
T ss_dssp             -------HTCSCEECCEECCSSSC
T ss_pred             -------cCCCeEEEEeccccccC
Confidence                   27899999999998653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.52  E-value=1.2e-14  Score=132.97  Aligned_cols=119  Identities=20%  Similarity=0.239  Sum_probs=91.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~  296 (355)
                      +.+.+.+||++|++.++..|..++.+++++|||+|+++          ..++++...|+..+.... ..+.|+||++||+
T Consensus       199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence            46789999999999999999999999999999999999          778988888988887643 3689999999999


Q ss_pred             CCCCcc----------------cCCHHHHHHHH--------h---hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        297 DLSDKR----------------QVSTEEGERKA--------K---ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       297 Dl~~~~----------------~v~~~~~~~~~--------~---~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      |+.+.+                .+..+++..++        +   ..++.+++|||+++.||+++|+++.+.|....
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~  355 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  355 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence            985322                25666766654        1   34578999999999999999999999887543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.50  E-value=2.5e-14  Score=131.89  Aligned_cols=118  Identities=17%  Similarity=0.215  Sum_probs=96.4

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhc-CCCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVRTER-GSDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~  296 (355)
                      +.+.+.+||++|++.++.+|..++.+++++|+|||+++          ..++++...|+..+.... ..++|++|++||+
T Consensus       215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~  294 (402)
T 1azs_C          215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  294 (402)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred             CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence            35889999999999999999999999999999999999          889999999999987653 3789999999999


Q ss_pred             CCCCccc---C---------------------------CHHHHHHHH-----hh--------cCcEEEEecCCCCCCHHH
Q psy15725        297 DLSDKRQ---V---------------------------STEEGERKA-----KE--------LNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       297 Dl~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~~~SA~~~~gv~~  333 (355)
                      |+...+.   +                           ..+++..++     +.        .++.+++|||+++.||++
T Consensus       295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~  374 (402)
T 1azs_C          295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  374 (402)
T ss_dssp             HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred             hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence            9853321   1                           024444442     11        357889999999999999


Q ss_pred             HHHHHHHHcCCC
Q psy15725        334 LFRRVAAALPGM  345 (355)
Q Consensus       334 l~~~l~~~i~~~  345 (355)
                      +|+++.+.|...
T Consensus       375 vF~~v~~~I~~~  386 (402)
T 1azs_C          375 VFNDCRDIIQRM  386 (402)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.50  E-value=2.9e-14  Score=131.24  Aligned_cols=102  Identities=22%  Similarity=0.228  Sum_probs=70.2

Q ss_pred             EEEEEEecCCcccc-------------cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccc
Q psy15725         85 VRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIE  151 (355)
Q Consensus        85 ~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
                      ..+.+|||||...+             ..+...+++.+|++|+|+|..+.....  ..|+..++..              
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~--------------  199 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV--------------  199 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS--------------
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh--------------
Confidence            36899999998776             456677889999999999987654432  2233333221              


Q ss_pred             cccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725        152 TNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  229 (355)
                                                 ...+.|+++|+||+|+.+......+.........+.+++.+++..+.+++.
T Consensus       200 ---------------------------~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~  250 (360)
T 3t34_A          200 ---------------------------DPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINK  250 (360)
T ss_dssp             ---------------------------CTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHT
T ss_pred             ---------------------------cccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhcc
Confidence                                       123679999999999876554443444445556677888898888776653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.50  E-value=1.9e-14  Score=128.94  Aligned_cols=60  Identities=15%  Similarity=0.102  Sum_probs=40.0

Q ss_pred             CCceEEEEeeCCCCCCcccC--CHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQV--STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .+.|+++|+||.|+.+.+++  ..+++..+++..+++++++||++| |++++|.++.+.+.+.
T Consensus       154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            56899999999999765433  234566777888899999999999 9999999999887543

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.48  E-value=2.3e-13  Score=126.44  Aligned_cols=92  Identities=14%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcC--CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      ++.+++++|++ ...+.++..+...+.....  .+.|.++++||+|+... . .........+..+++++++||+++.|+
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g~gi  312 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTGAGL  312 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCccCH
Confidence            44555666665 3444455555444443321  35788999999998643 1 122233344455789999999999999


Q ss_pred             HHHHHHHHHHcCCCCCC
Q psy15725        332 KQLFRRVAAALPGMDST  348 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~~~  348 (355)
                      ++++++|.+.+...+..
T Consensus       313 ~eL~~~i~~~l~~~~~~  329 (416)
T 1udx_A          313 PALKEALHALVRSTPPP  329 (416)
T ss_dssp             HHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999999876653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.48  E-value=3.5e-13  Score=123.24  Aligned_cols=225  Identities=16%  Similarity=0.169  Sum_probs=122.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      -..+|++||.||||||||+|+|++.....                  ..++-+   |+  +.....+.+  .+.++.++|
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v------------------~~~pft---T~--~~~~g~~~~--~~~~i~l~D  125 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEA------------------AEYEFT---TL--VTVPGVIRY--KGAKIQMLD  125 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCG------------------GGTCSS---CC--CEEEEEEEE--TTEEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcc------------------cCCCCc---ee--eeeeEEEEe--CCcEEEEEe
Confidence            34689999999999999999999854211                  111111   11  111222333  346799999


Q ss_pred             cCCcccccc-------cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCc
Q psy15725         92 TAGQERFRS-------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANS  164 (355)
Q Consensus        92 ~~g~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
                      |||...-..       ..-..++.+|++++|+|++++..  .......++...                           
T Consensus       126 ~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~---------------------------  176 (376)
T 4a9a_A          126 LPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGV---------------------------  176 (376)
T ss_dssp             CGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHT---------------------------
T ss_pred             CCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHh---------------------------
Confidence            999732211       12234678999999999998632  222222333221                           


Q ss_pred             cccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccc
Q psy15725        165 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFR  244 (355)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~  244 (355)
                                  .......|.+++.||.|.....                 +.........             +.+...
T Consensus       177 ------------~~~l~~k~~~i~~nK~d~~gi~-----------------i~~~~~~~~l-------------~~eeik  214 (376)
T 4a9a_A          177 ------------GIRLNKTPPDILIKKKEKGGIS-----------------ITNTVPLTHL-------------GNDEIR  214 (376)
T ss_dssp             ------------TEEETCCCCCEEEEECSSSCEE-----------------EEESSCCSSC-------------CHHHHH
T ss_pred             ------------hHhhccCChhhhhhHhhhhhhh-----------------hhcchhhhhc-------------cHHHHH
Confidence                        0112356788899999964211                 0000000000             011111


Q ss_pred             ccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEec
Q psy15725        245 SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETS  324 (355)
Q Consensus       245 ~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  324 (355)
                      .+...+.-...-++++.+.+    .++   ....+........|++++.||+|..+.     ++...+.+  .-.++++|
T Consensus       215 ~il~~~~lt~kpv~~~~nv~----edd---l~d~~~~~~~~~~p~i~v~nKid~~~~-----eele~l~~--~~~~~~is  280 (376)
T 4a9a_A          215 AVMSEYRINSAEIAFRCDAT----VDD---LIDVLEASSRRYMPAIYVLNKIDSLSI-----EELELLYR--IPNAVPIS  280 (376)
T ss_dssp             HHHHHTTCCSEEEEECSCCC----HHH---HHHHHTTTTCEEECEEEEEECGGGSCH-----HHHHHHTT--STTEEECC
T ss_pred             HHHHHhcccCCCeeecccCC----HHH---HHHHHHHHHhhccceEEEEecccccCH-----HHHHHHhc--ccchhhhh
Confidence            12222222233334443332    222   222332222256899999999996432     22222222  12588999


Q ss_pred             CCCCCCHHHHHHHHHHHcCCCC
Q psy15725        325 AKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       325 A~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      +..+.|++++.+.+.+.+--.+
T Consensus       281 ~~~e~gLd~Li~~~y~~L~Li~  302 (376)
T 4a9a_A          281 SGQDWNLDELLQVMWDRLNLVR  302 (376)
T ss_dssp             TTTCTTHHHHHHHHHHHHCCEE
T ss_pred             hhhcccchhHHHHHHHHcCCcE
Confidence            9999999999999988875443

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.46  E-value=1.7e-13  Score=122.80  Aligned_cols=105  Identities=16%  Similarity=0.184  Sum_probs=87.7

Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH
Q psy15725        231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG  309 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  309 (355)
                      .+.+||+  ++.++.+++.+++++|++++|||++++. ++..+..|+..+..   .++|+++|+||+|+.+.+.+  ++.
T Consensus        64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~  136 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKV  136 (301)
T ss_dssp             SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHH
T ss_pred             eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHH
Confidence            5679999  8899999999999999999999999987 78888899988765   58999999999999755443  334


Q ss_pred             HHHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        310 ERKAKELN--VMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       310 ~~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ..+++.++  +++++|||++|.||+++|.++...+
T Consensus       137 ~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~gei  171 (301)
T 1u0l_A          137 RELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKI  171 (301)
T ss_dssp             HHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSE
T ss_pred             HHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCe
Confidence            45555555  8999999999999999999886543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.46  E-value=1.5e-13  Score=138.95  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=75.0

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccc--cccceeeeeeeee--------
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMY--------   79 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~--------   79 (355)
                      +....||+|+|+.|+|||||+++|+.........  ..+.+.+    + +....+..  .|+........+.        
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~--~~~~~~~----~-D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~   88 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAA--KAGEARF----T-DTRKDEQERGITIKSTAISLYSEMSDEDVKE   88 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-------------------------CCCBCCCEEEEEEECCHHHHHH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccc--cCCCcee----e-cCchhhhhcceeEeeceeEEEeccccccccc
Confidence            3456899999999999999999999852111000  0011111    1 11111111  2332222222221        


Q ss_pred             ----ecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHH
Q psy15725         80 ----LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  133 (355)
Q Consensus        80 ----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~  133 (355)
                          .++....+++|||||+.+|...+..+++.+|++|+|||+++..+++....|...
T Consensus        89 i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~  146 (842)
T 1n0u_A           89 IKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA  146 (842)
T ss_dssp             CSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH
T ss_pred             ccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence                234578999999999999999999999999999999999999888887766544

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.45  E-value=2e-13  Score=123.27  Aligned_cols=28  Identities=32%  Similarity=0.503  Sum_probs=25.2

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSF   38 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~   38 (355)
                      ....+|+|+|++|||||||+|+|++..+
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            4557899999999999999999999876

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.45  E-value=2.6e-13  Score=125.78  Aligned_cols=103  Identities=18%  Similarity=0.299  Sum_probs=55.7

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeeeee---------------
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT---------------   77 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~---------------   77 (355)
                      ++|+++|.+|||||||+|+|++.... ..++.+                  +..++.+..+....               
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~t------------------T~~~~~g~~~~~~~~~~~~l~~~~~p~~~   62 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFT------------------TIEANVGVTYAITDHPCKELGCSPNPQNY   62 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------------------------CCEEEEEEEEECSCSSSCCSCCCSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc------------------ccCCceEEEeeccCCchHHhhhhcccccc
Confidence            58999999999999999999986521 111110                  11222232111100               


Q ss_pred             eeecC-cEEEEEEEecCCccc----cccccc---ccccCccEEEEEEECCCc-----------chhhhHHHHHHHH
Q psy15725         78 MYLED-RTVRLQLWDTAGQER----FRSLIP---SYIRDSTVAVVVYDITNA-----------NSFHQTSKWIDDV  134 (355)
Q Consensus        78 ~~~~~-~~~~~~i~D~~g~~~----~~~~~~---~~~~~~d~ii~v~d~~~~-----------~s~~~~~~~~~~~  134 (355)
                      ..+++ +...+.+|||||+..    ...+..   ..++.+|++++|+|+++.           +.+.++..+..++
T Consensus        63 ~~~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL  138 (397)
T 1wxq_A           63 EYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREI  138 (397)
T ss_dssp             CEETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHH
T ss_pred             cccCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHH
Confidence            01122 246899999999853    222333   457899999999999886           4555555444444

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.44  E-value=2.6e-13  Score=126.20  Aligned_cols=164  Identities=14%  Similarity=0.197  Sum_probs=83.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      -.++|+++|++|||||||+++|++..++....+               .......++++.......+...+....+.+||
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~---------------~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~D   94 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP---------------GPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVD   94 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCC---------------SCC-----CCEEEEEECC------CEEEEEEE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCC---------------CcccCCccceeeeeEEEEEecCCcccceeeee
Confidence            357899999999999999999998664211000               00000122333222222222233345789999


Q ss_pred             cCCccccc-------c------------------cccccccCccEEEEEEECCCc-chhhhHH-HHHHHHhhhcCCceEE
Q psy15725         92 TAGQERFR-------S------------------LIPSYIRDSTVAVVVYDITNA-NSFHQTS-KWIDDVRTERGSDVII  144 (355)
Q Consensus        92 ~~g~~~~~-------~------------------~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~  144 (355)
                      ++|...+.       .                  +...++.++++.+++|+.... .++.... .|+..+.         
T Consensus        95 t~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---------  165 (418)
T 2qag_C           95 TPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---------  165 (418)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---------
T ss_pred             chhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---------
Confidence            99976531       1                  223445566655555555443 4565544 5666653         


Q ss_pred             eeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceeh--hhhhhhhhccCeEEEEeeee
Q psy15725        145 MLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSAK  222 (355)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~--~~~~~~~~~~~~~~~~~sa~  222 (355)
                                                          .++|+|+|+||+|+...+.+..  ......+...+++++++|+.
T Consensus       166 ------------------------------------~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~  209 (418)
T 2qag_C          166 ------------------------------------EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPET  209 (418)
T ss_dssp             ------------------------------------TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC--
T ss_pred             ------------------------------------ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCC
Confidence                                                2789999999999876555443  45566666778889999988


Q ss_pred             eccccceEEEEEE
Q psy15725        223 AGYNVKQVRLQLW  235 (355)
Q Consensus       223 ~~~~v~~i~~~i~  235 (355)
                      .+.+++..+..+.
T Consensus       210 ~~~~v~~~~~~l~  222 (418)
T 2qag_C          210 DDEEENKLVKKIK  222 (418)
T ss_dssp             -------------
T ss_pred             CCcCHHHHHHHHH
Confidence            8887776554443

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.43  E-value=8.7e-14  Score=124.68  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=98.8

Q ss_pred             ceeeecccCCCC-CccccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcc-hhhhHH
Q psy15725         51 SLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTS  128 (355)
Q Consensus        51 ~~~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~  128 (355)
                      ..+.+|..+.+. ..+.||+|..+. .....++   .+.+||+  +++|..+++.+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            455666667777 678888885444 3332222   6899999  8999999999999999999999999987 788899


Q ss_pred             HHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhh
Q psy15725        129 KWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK  208 (355)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~  208 (355)
                      .|+..++.                                            .++|+++|+||+|+.+.+.+  ++..++
T Consensus       106 ~~l~~~~~--------------------------------------------~~~piilv~NK~DL~~~~~v--~~~~~~  139 (301)
T 1u0l_A          106 KFLVLAEK--------------------------------------------NELETVMVINKMDLYDEDDL--RKVREL  139 (301)
T ss_dssp             HHHHHHHH--------------------------------------------TTCEEEEEECCGGGCCHHHH--HHHHHH
T ss_pred             HHHHHHHH--------------------------------------------CCCCEEEEEeHHHcCCchhH--HHHHHH
Confidence            99987753                                            27999999999999765433  334455


Q ss_pred             hhccC--eEEEEeeeeeccccceE
Q psy15725        209 AKELN--VMFIETSAKAGYNVKQV  230 (355)
Q Consensus       209 ~~~~~--~~~~~~sa~~~~~v~~i  230 (355)
                      +..+.  .+++++||.++.+++.+
T Consensus       140 ~~~~~~~~~~~~~SAktg~gv~~l  163 (301)
T 1u0l_A          140 EEIYSGLYPIVKTSAKTGMGIEEL  163 (301)
T ss_dssp             HHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             HHHHhhhCcEEEEECCCCcCHHHH
Confidence            55555  78999999999988764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.43  E-value=1.7e-13  Score=135.94  Aligned_cols=49  Identities=10%  Similarity=0.213  Sum_probs=38.7

Q ss_pred             EEEEEecCCccc---ccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         86 RLQLWDTAGQER---FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        86 ~~~i~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      .+.+|||||...   ....+..+++.+|++++|+|++++.+......|.+.+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence            589999999754   3455667788999999999999988877776665544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.42  E-value=5.1e-14  Score=120.85  Aligned_cols=60  Identities=18%  Similarity=0.209  Sum_probs=47.0

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHHhhc--CcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL--NVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +.|+++|+||+|+.+.+.....+....++..  +++++++||++|.|++++|++|.+.+...
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            4789999999998654444555555555543  57999999999999999999999887543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.41  E-value=1.2e-13  Score=125.90  Aligned_cols=122  Identities=21%  Similarity=0.249  Sum_probs=90.9

Q ss_pred             ccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCC----------cchhhhHHHHHHHHh
Q psy15725         66 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------ANSFHQTSKWIDDVR  135 (355)
Q Consensus        66 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~  135 (355)
                      .+|+|+....  +.+  +.+.+.+|||+|++.++..|..++++++++|+|||+++          ..+|+....|++.+.
T Consensus       178 ~~T~Gi~~~~--~~~--~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~  253 (353)
T 1cip_A          178 VKTTGIVETH--FTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC  253 (353)
T ss_dssp             CCCCSEEEEE--EEE--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred             CceeceEEEE--Eee--CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence            3566654322  223  35789999999999999999999999999999999999          566888778877775


Q ss_pred             hhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCccc---------------ce
Q psy15725        136 TERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR---------------QV  200 (355)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---------------~v  200 (355)
                      ..                                        ....++|++|++||+|+..++               .+
T Consensus       254 ~~----------------------------------------~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~  293 (353)
T 1cip_A          254 NN----------------------------------------KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSN  293 (353)
T ss_dssp             TC----------------------------------------GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCS
T ss_pred             cC----------------------------------------ccccCCcEEEEEECcCchhhhccccchhhcccccCCCC
Confidence            32                                        112479999999999985332               24


Q ss_pred             ehhhhhhhhh-----------ccCeEEEEeeeeeccccceEE
Q psy15725        201 STEEGERKAK-----------ELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       201 ~~~~~~~~~~-----------~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      +.+++..++.           ..++.+.++||.++.++..++
T Consensus       294 ~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF  335 (353)
T 1cip_A          294 TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF  335 (353)
T ss_dssp             CHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence            4555555554           356789999999998887543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.41  E-value=5.7e-13  Score=119.79  Aligned_cols=115  Identities=19%  Similarity=0.336  Sum_probs=94.8

Q ss_pred             eEEEEEEeCCCcccc-----cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc--CCCceEEEEeeCCCCCC-
Q psy15725        229 QVRLQLWDTAGQERF-----RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLSD-  300 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~-----~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~-  300 (355)
                      .+.+.+||++|++.+     ..++..++.+++++++|||+++..+++++..|...+....  ..++|+++|+||+|+.+ 
T Consensus        51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~  130 (307)
T 3r7w_A           51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL  130 (307)
T ss_dssp             TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence            578899999999988     7788889999999999999999999998877655443321  26899999999999975 


Q ss_pred             -ccc----CCHHHHHHHHhhcC---cEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        301 -KRQ----VSTEEGERKAKELN---VMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       301 -~~~----v~~~~~~~~~~~~~---~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                       .+.    +...++..+++..|   ++++++||++ .|+.++|..+++.+..
T Consensus       131 ~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          131 DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence             333    55566777888876   7999999999 8999999999887654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.39  E-value=2.6e-13  Score=124.45  Aligned_cols=29  Identities=31%  Similarity=0.472  Sum_probs=25.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFD   39 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~   39 (355)
                      ....+|+|+|.+|||||||+|+|++..+.
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            44579999999999999999999998764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.38  E-value=4.9e-13  Score=129.11  Aligned_cols=140  Identities=19%  Similarity=0.222  Sum_probs=82.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCC---CCceeeeecccceeeecccCCCCCc-ccccc----ceeeee-------
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFD---NTYQATIVGKTSLITRFMYDSFDNT-YQATI----GIDFLS-------   75 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~----~~~~~~-------   75 (355)
                      ....+|+|+|.+|||||||+|+|++..+.   ....|+.    ........+..... ...+.    ...+..       
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T----~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~  138 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT----DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT  138 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC----CSEEEEECCSSSEEECCC------------------C
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc----ceEEEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence            35689999999999999999999998763   1222211    01111111110000 00000    000000       


Q ss_pred             -----eeeeecCc-EEEEEEEecCCccc-----------ccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhc
Q psy15725         76 -----KTMYLEDR-TVRLQLWDTAGQER-----------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER  138 (355)
Q Consensus        76 -----~~~~~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~  138 (355)
                           ..+.++.. ...+.+|||||...           |...+..++..+|++++|+|+++....+....|++.+..  
T Consensus       139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--  216 (550)
T 2qpt_A          139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--  216 (550)
T ss_dssp             CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred             ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence                 00001110 02588999999864           445566678899999999999886666666667666542  


Q ss_pred             CCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCccc
Q psy15725        139 GSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR  198 (355)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  198 (355)
                                                                ...|+++|+||+|+.+..
T Consensus       217 ------------------------------------------~~~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          217 ------------------------------------------HEDKIRVVLNKADMVETQ  234 (550)
T ss_dssp             ------------------------------------------CGGGEEEEEECGGGSCHH
T ss_pred             ------------------------------------------cCCCEEEEEECCCccCHH
Confidence                                                      268899999999986543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.36  E-value=2.1e-12  Score=110.30  Aligned_cols=62  Identities=21%  Similarity=0.206  Sum_probs=44.8

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHHhhc--CcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKAKEL--NVMFIETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      +.|+++|+||+|+.+............++..  +++++++||++|.|++++|++|.+.+...+.
T Consensus       154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~  217 (221)
T 2wsm_A          154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD  217 (221)
T ss_dssp             HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred             hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence            4789999999998543333444444444432  4799999999999999999999999876543

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.34  E-value=1.3e-12  Score=108.02  Aligned_cols=107  Identities=5%  Similarity=-0.071  Sum_probs=72.6

Q ss_pred             CCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHH---HHHHhhc--CCCceEEEEeeCC-CCCCcccCCHHHHH
Q psy15725        237 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI---DDVRTER--GSDVIIMLVGNKT-DLSDKRQVSTEEGE  310 (355)
Q Consensus       237 ~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~---~~i~~~~--~~~~piilv~nK~-Dl~~~~~v~~~~~~  310 (355)
                      .+|+..++.+|+.||.++|++|||+|++|....+ ..+.+   ..+....  ..+.|+++++||. |+.  ...+..+..
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence            4678999999999999999999999999886544 43443   2232222  2589999999995 774  334444443


Q ss_pred             HHHh----hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        311 RKAK----ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       311 ~~~~----~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      ....    ...|.++.|||++|+|+.+.++||.+.+.+++
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            3221    24589999999999999999999999887655

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.33  E-value=5.2e-12  Score=114.82  Aligned_cols=83  Identities=22%  Similarity=0.275  Sum_probs=53.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCC-CceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCc---------
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR---------   83 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------   83 (355)
                      ++|+++|.+|||||||+|++++..... .++.+                  +..|+.+      .+.+++.         
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~t------------------Ti~p~~g------~v~~~~~r~~~l~~~~   58 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFC------------------TIEPNTG------VVPMPDPRLDALAEIV   58 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCC------------------CCCCCSS------EEECCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc------------------eECceEE------EEecCCcccceeeeee
Confidence            689999999999999999999865211 11100                  1112211      1111111         


Q ss_pred             ------EEEEEEEecCCccccc----ccccc---cccCccEEEEEEECCC
Q psy15725         84 ------TVRLQLWDTAGQERFR----SLIPS---YIRDSTVAVVVYDITN  120 (355)
Q Consensus        84 ------~~~~~i~D~~g~~~~~----~~~~~---~~~~~d~ii~v~d~~~  120 (355)
                            ...+.+|||||+.++.    .+...   .++.+|++++|+|+++
T Consensus        59 ~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           59 KPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             CCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                  1479999999987653    33333   4789999999999987

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.31  E-value=5.1e-13  Score=121.68  Aligned_cols=109  Identities=22%  Similarity=0.160  Sum_probs=80.8

Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECC----------CcchhhhHHHHHHHHhhhcCCceEEeecccccc
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDVRTERGSDVIIMLVGSIET  152 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
                      +.+.+++|||+|++.|+.+|..++++++++|+|||++          +.++|+....|++.+...               
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~---------------  245 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---------------  245 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC---------------
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc---------------
Confidence            5789999999999999999999999999999999998          788999888888887532               


Q ss_pred             ccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccc--e-------------------ehhhhhhhhhc
Q psy15725        153 NFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ--V-------------------STEEGERKAKE  211 (355)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--v-------------------~~~~~~~~~~~  211 (355)
                                               ....++|++||+||+|+..++.  +                   +.+++..++..
T Consensus       246 -------------------------~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~  300 (354)
T 2xtz_A          246 -------------------------PCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKK  300 (354)
T ss_dssp             -------------------------GGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHH
T ss_pred             -------------------------cccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHH
Confidence                                     1124799999999999854321  1                   12334444221


Q ss_pred             ----------------cCeEEEEeeeeeccccceEE
Q psy15725        212 ----------------LNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       212 ----------------~~~~~~~~sa~~~~~v~~i~  231 (355)
                                      ....++++||.++.++..++
T Consensus       301 ~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF  336 (354)
T 2xtz_A          301 KFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF  336 (354)
T ss_dssp             HHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred             HHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence                            23456899999998887643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.30  E-value=1.6e-12  Score=119.17  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=67.6

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE  308 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~  308 (355)
                      .+.+.|+||+|...   .....+..+|.+++|+|.+.....+.+.       . ...+.|+++|+||+|+.+..... ..
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~-~~~~~p~ivVlNK~Dl~~~~~~~-~~  238 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------K-GVLELADIVVVNKADGEHHKEAR-LA  238 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------T-TSGGGCSEEEEECCCGGGHHHHH-HH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------H-hHhhcCCEEEEECCCCcChhHHH-HH
Confidence            34567889998322   1222347899999999987655432221       1 11346999999999985432211 11


Q ss_pred             HHHHHh----------hcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        309 GERKAK----------ELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       309 ~~~~~~----------~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      ...+..          .++.+++++||++|.||++++++|.+.++.
T Consensus       239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            111211          124689999999999999999999988754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.20  E-value=2.2e-11  Score=108.93  Aligned_cols=100  Identities=17%  Similarity=0.144  Sum_probs=80.8

Q ss_pred             cccccccccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC-HHHHHHHHhhcC
Q psy15725        240 QERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKAKELN  317 (355)
Q Consensus       240 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~~~  317 (355)
                      ++.+..+.+.+++++|.+++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+++.+. .++...+.+..+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            5667777788999999999999999886 88888899987765   689999999999997554322 233445556678


Q ss_pred             cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        318 VMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       318 ~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ++++++||++|.|++++++.+...+
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~G~i  167 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLEGFI  167 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTTTCE
T ss_pred             CeEEEEECCCCCCHHHHHhhccCcE
Confidence            8999999999999999999876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.20  E-value=6.5e-12  Score=113.20  Aligned_cols=88  Identities=23%  Similarity=0.288  Sum_probs=69.7

Q ss_pred             cccccceeeeeeeeeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECC----------CcchhhhHHHHHHHH
Q psy15725         65 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT----------NANSFHQTSKWIDDV  134 (355)
Q Consensus        65 ~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~  134 (355)
                      ..+|+|+......    .+.+.+++|||+|++.++.+|..++++++++|+|||++          +.++|.....|+..+
T Consensus       145 ~~~TiGi~~~~~~----~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i  220 (340)
T 4fid_A          145 RTKTTGIHEYDFV----VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI  220 (340)
T ss_dssp             CCCCCSCEEEEEE----SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred             ccceeeeEEEEEE----eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence            4456665443332    34578999999999999999999999999999999998          678888887777776


Q ss_pred             hhhcCCceEEeeccccccccccccccccCccccCccccccccccCCCccEEEEEeecCCCCc
Q psy15725        135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  196 (355)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  196 (355)
                      ...                                        ....++|++|++||+|+..
T Consensus       221 ~~~----------------------------------------~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          221 MTN----------------------------------------EFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             HHC----------------------------------------GGGTTSEEEEEEECHHHHH
T ss_pred             hhh----------------------------------------hccCCCeEEEEEECchhhh
Confidence            532                                        2224799999999999854

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.20  E-value=1.4e-11  Score=106.82  Aligned_cols=107  Identities=5%  Similarity=-0.071  Sum_probs=76.7

Q ss_pred             CCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH---HHH-hhc-CCCceEEEEeeC-CCCCCcccCCHHHHH
Q psy15725        237 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID---DVR-TER-GSDVIIMLVGNK-TDLSDKRQVSTEEGE  310 (355)
Q Consensus       237 ~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~---~i~-~~~-~~~~piilv~nK-~Dl~~~~~v~~~~~~  310 (355)
                      .+|+..++.+|+.||.++|++|||+|++|...++ ..+.+.   .+. +.. ..+.|+++.+|| .|+.  ...+..+..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHH
Confidence            4688999999999999999999999999988654 333222   222 221 268999999997 5874  334444433


Q ss_pred             HHHh----hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        311 RKAK----ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       311 ~~~~----~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      +...    ...|.++.|||++|+|+.|.++||.+.+.+++
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            3221    24589999999999999999999999997665

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.19  E-value=2.4e-11  Score=113.18  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=85.9

Q ss_pred             EEEEEeCCCccccccccc-------ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc
Q psy15725        231 RLQLWDTAGQERFRSLIP-------SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~~~~-------~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~  303 (355)
                      .+.+|||+|...+..+..       .++..+|++++|+|.+..   .....|+..+.+   .++|+++|+||+|+.+.+.
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~---~~~piIvV~NK~Dl~~~~~  157 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKE---MEIPFVVVVNKIDVLGEKA  157 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHH---TTCCEEEECCCCTTTTCCC
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHh---cCCCEEEEEeCcCCCCccH
Confidence            678999999887766533       368889999999998322   233567777766   4899999999999976554


Q ss_pred             CCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        304 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .  +....+.+..+++++++||++|.|++++|++|.+.++..
T Consensus       158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            4  455566667788999999999999999999999999766

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.19  E-value=4.5e-12  Score=110.85  Aligned_cols=158  Identities=18%  Similarity=0.238  Sum_probs=112.7

Q ss_pred             CCcceeEEEEEcCC---------CCChhHHHHHhhh---cCCCCCceeeeecccceeeecccCCCCCccccccceeeeee
Q psy15725          9 NPLRKFKLVFLGEQ---------SVGKTSLITRFMY---DSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSK   76 (355)
Q Consensus         9 ~~~~~~~I~vvG~~---------~vGKStLl~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~   76 (355)
                      ...+.+||+++|++         |||||||+++|++   ..+...+.|++.                      +.++...
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~----------------------~~~~~~~   72 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLS----------------------TSDFGGR   72 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEEC----------------------HHHHTST
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccc----------------------cccccee
Confidence            35667999999999         9999999999998   445444444431                      1111111


Q ss_pred             e--------------eeecCcEEEEEEEe-----------------------cCCccccccccccccc------------
Q psy15725         77 T--------------MYLEDRTVRLQLWD-----------------------TAGQERFRSLIPSYIR------------  107 (355)
Q Consensus        77 ~--------------~~~~~~~~~~~i~D-----------------------~~g~~~~~~~~~~~~~------------  107 (355)
                      .              ..+++..+.+.+||                       ++|+++|..++..+++            
T Consensus        73 ~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
T 3c5h_A           73 VVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFE  152 (255)
T ss_dssp             TTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSC
T ss_pred             EeecccccccccccccccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhcccccccccccc
Confidence            1              12356678899999                       7788888888888887            


Q ss_pred             ---------CccEEEEEEECCCc--chhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccccc
Q psy15725        108 ---------DSTVAVVVYDITNA--NSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVR  176 (355)
Q Consensus       108 ---------~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (355)
                               ++|++++|||++++  .+|+.+..|+.++....                                      
T Consensus       153 ~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~--------------------------------------  194 (255)
T 3c5h_A          153 QKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL--------------------------------------  194 (255)
T ss_dssp             CCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHH--------------------------------------
T ss_pred             ccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHh--------------------------------------
Confidence                     79999999999998  99999999999886431                                      


Q ss_pred             ccCCCccEEEEEeecCCCCcccceehhhhhhhhhc-cCeEEEEeeeeeccccceE
Q psy15725        177 TERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       177 ~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~-~~~~~~~~sa~~~~~v~~i  230 (355)
                        ...++|+++|+||+|+...+.+  .+..+++.. .+.+++++|+.++.+++.+
T Consensus       195 --~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~el  245 (255)
T 3c5h_A          195 --AKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLA  245 (255)
T ss_dssp             --HHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHH
T ss_pred             --ccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHH
Confidence              1137999999999999765554  355566655 4789999999999887754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.17  E-value=7.1e-12  Score=109.49  Aligned_cols=105  Identities=12%  Similarity=0.147  Sum_probs=78.9

Q ss_pred             EEEEEEeCCCcccccc----------cccccc--cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725        230 VRLQLWDTAGQERFRS----------LIPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD  297 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~----------~~~~~~--~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D  297 (355)
                      ..+.+||+||...+..          +...++  ..+|++++|+|+++..+..   .+...+.+   .++|+++|+||+|
T Consensus        48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~---~l~~~l~~---~~~pvilv~NK~D  121 (256)
T 3iby_A           48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHL---YLTSQLFE---LGKPVVVALNMMD  121 (256)
T ss_dssp             EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHH---HHHHHHTT---SCSCEEEEEECHH
T ss_pred             eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHH---HHHHHHHH---cCCCEEEEEEChh
Confidence            4778999999877653          445556  7899999999998754333   23333333   4899999999999


Q ss_pred             CCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHH
Q psy15725        298 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  341 (355)
Q Consensus       298 l~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~  341 (355)
                      +...+.+.. ....+.+..+++++++||++|.|++++|++|.+.
T Consensus       122 l~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          122 IAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             cCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            865443322 2334666778999999999999999999999987

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.13  E-value=7.2e-11  Score=108.01  Aligned_cols=89  Identities=19%  Similarity=0.200  Sum_probs=54.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCC-CCceeeeecccceeeecccCCCCCccccccceeeee--------eeeeec---
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLS--------KTMYLE---   81 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--------~~~~~~---   81 (355)
                      ++|+++|.+|||||||+|++++.... ..++.                  .+..|+++.....        ......   
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~------------------~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~   63 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPF------------------ATIDKNVGVVPLEDERLYALQRTFAKGERV   63 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCG------------------GGGSTTEEEEECCCHHHHHHHHHHCBTTBC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCC------------------ceeccceeeEecChHHHHHHHHHhcccccc
Confidence            57999999999999999999985411 11110                  0123333321100        000001   


Q ss_pred             --CcEEEEEEEecCCccccc----cccc---ccccCccEEEEEEECCC
Q psy15725         82 --DRTVRLQLWDTAGQERFR----SLIP---SYIRDSTVAVVVYDITN  120 (355)
Q Consensus        82 --~~~~~~~i~D~~g~~~~~----~~~~---~~~~~~d~ii~v~d~~~  120 (355)
                        .....+.+|||||+.++.    .+..   ..++.+|++++|+|+++
T Consensus        64 ~~~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCEECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence              123579999999987643    2222   34789999999999986

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.12  E-value=1.3e-11  Score=109.08  Aligned_cols=109  Identities=16%  Similarity=0.168  Sum_probs=80.2

Q ss_pred             EEEEEEeCCCccccccc----------ccccc--cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725        230 VRLQLWDTAGQERFRSL----------IPSYI--RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD  297 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~----------~~~~~--~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D  297 (355)
                      ..+.+||++|...+...          +..++  ..+|++++|+|+++....   ..+...+.+   .++|+++|+||+|
T Consensus        50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~---~~~p~ivv~NK~D  123 (274)
T 3i8s_A           50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLD  123 (274)
T ss_dssp             CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHH---HTCCEEEEEECHH
T ss_pred             CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHH---HHHHHHHHh---cCCCEEEEEECcc
Confidence            35678999998876632          22222  689999999998875433   334444444   3799999999999


Q ss_pred             CCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        298 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       298 l~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +...+.+.. ....+.+..+++++++||++|.|++++|++|.+.++..
T Consensus       124 l~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          124 IAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             HHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             chhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            864433221 23456667789999999999999999999999988765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.12  E-value=2.3e-10  Score=104.45  Aligned_cols=102  Identities=10%  Similarity=0.079  Sum_probs=60.5

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH
Q psy15725        230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG  309 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  309 (355)
                      +.+.++||+|-...   .......+|.+++|+|.+.+...+.+.   ..+     .+.|.++|+||+|+.+..... ...
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI-----IEMADLVAVTKSDGDLIVPAR-RIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence            34668899884211   123456899999999988654322111   111     356889999999985321110 011


Q ss_pred             HHHHh----------hcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        310 ERKAK----------ELNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       310 ~~~~~----------~~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ..+..          .++.+++++||++|.|+++++++|.+.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            11111          12358999999999999999999988753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.09  E-value=4.9e-10  Score=98.12  Aligned_cols=113  Identities=16%  Similarity=-0.008  Sum_probs=69.2

Q ss_pred             EEEEEEeCCCccccccccc------ccccCCcEEEEEEeCCCcccHHHHHHHHHHH-HhhcCCCceEEEEeeCCCCCCcc
Q psy15725        230 VRLQLWDTAGQERFRSLIP------SYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTERGSDVIIMLVGNKTDLSDKR  302 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~~~------~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piilv~nK~Dl~~~~  302 (355)
                      +.+.++||+|.........      ..+.. +.+++++|.+......+........ ......++|+++|+||+|+.+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4577999999766543322      13456 8899999876544433332211111 11111478999999999986443


Q ss_pred             cCCHHHH---------HH-----------------HHhhcC--cEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        303 QVSTEEG---------ER-----------------KAKELN--VMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       303 ~v~~~~~---------~~-----------------~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      .+.....         ..                 +++..+  ++++++||++|.|+++++++|.+.+.
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            2100000         00                 012222  48999999999999999999998765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.09  E-value=2.6e-11  Score=103.12  Aligned_cols=103  Identities=17%  Similarity=0.250  Sum_probs=74.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccC----CcEEEEEEeCC-CcccHHHHHHHHHHHHhh----cCCCceEEEEeeCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRD----STVAVVVYDIT-NANSFHQTSKWIDDVRTE----RGSDVIIMLVGNKTDL  298 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~----~~~vi~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl  298 (355)
                      ....+.+||++|.+.++..+..++..    ++++++|+|++ +..++.....|+..+...    ...++|+++|+||+|+
T Consensus        53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  132 (218)
T 1nrj_B           53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  132 (218)
T ss_dssp             GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence            45567899999999998888888877    89999999999 888888888888777554    2368999999999999


Q ss_pred             CCcccCC------HHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        299 SDKRQVS------TEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       299 ~~~~~v~------~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                      .+.+.+.      ..+...++...+++++++||++|.+
T Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          133 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            7655433      3334455555567888899988765

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.04  E-value=5.8e-11  Score=112.60  Aligned_cols=109  Identities=19%  Similarity=0.267  Sum_probs=78.6

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc--ccCCHH
Q psy15725        230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK--RQVSTE  307 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~  307 (355)
                      ..+.+|||||++.|...+...+..+|++++|+|+++....+....+ ..+..   .++|+++++||+|+.+.  +.+...
T Consensus        51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~  126 (501)
T 1zo1_I           51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI-QHAKA---AQVPVVVAVNKIDKPEADPDRVKNE  126 (501)
T ss_dssp             SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHHH---TTCCEEEEEECSSSSTTCCCCTTCC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH-HHHHh---cCceEEEEEEeccccccCHHHHHHH
Confidence            4678999999999999999999999999999999885443332222 22222   58999999999999642  222111


Q ss_pred             HH--HHHHhhcC--cEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        308 EG--ERKAKELN--VMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       308 ~~--~~~~~~~~--~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ..  ..+...++  ++++++||++|.||+++|++|....
T Consensus       127 l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~~  165 (501)
T 1zo1_I          127 LSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQA  165 (501)
T ss_dssp             CCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTTC
T ss_pred             HHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhhh
Confidence            10  01112222  6999999999999999999998653

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.01  E-value=7.3e-10  Score=109.49  Aligned_cols=102  Identities=17%  Similarity=0.163  Sum_probs=61.8

Q ss_pred             EEEEEecCCccc-------------ccccccccc-cCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccc
Q psy15725         86 RLQLWDTAGQER-------------FRSLIPSYI-RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIE  151 (355)
Q Consensus        86 ~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
                      .+.++||||...             +......++ ..+|++++|+|++....-.....+...+.                
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----------------  214 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----------------  214 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----------------
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----------------
Confidence            588999999643             122333344 57899999999988544433323444432                


Q ss_pred             cccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhh--hhhhccC-eEEEEeeeeeccccc
Q psy15725        152 TNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE--RKAKELN-VMFIETSAKAGYNVK  228 (355)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~--~~~~~~~-~~~~~~sa~~~~~v~  228 (355)
                                                  ..+.|+++|.||+|+.+..........  .+....+ .+++.+|+.++.+++
T Consensus       215 ----------------------------~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gvd  266 (772)
T 3zvr_A          215 ----------------------------PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKK  266 (772)
T ss_dssp             ----------------------------TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSE
T ss_pred             ----------------------------hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccch
Confidence                                        237899999999998654322111111  0001112 467778999888877


Q ss_pred             eEE
Q psy15725        229 QVR  231 (355)
Q Consensus       229 ~i~  231 (355)
                      .+.
T Consensus       267 eL~  269 (772)
T 3zvr_A          267 DIT  269 (772)
T ss_dssp             EHH
T ss_pred             hHH
Confidence            643

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.00  E-value=2.3e-10  Score=105.10  Aligned_cols=91  Identities=15%  Similarity=0.112  Sum_probs=48.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecC---------
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED---------   82 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---------   82 (355)
                      ..++|+++|.+|||||||+|++++..+.....|.                     .|+..+.  ..+.+++         
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~---------------------tTi~p~~--g~v~v~~~r~~~l~~~   77 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPF---------------------CTIDPNE--SRVPVPDERFDFLCQY   77 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC----------------------------------CCSE--EEEECCCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCc---------------------cccCcee--EEEEECCccceeeccc
Confidence            4578999999999999999999986531111110                     1111111  1111111         


Q ss_pred             ------cEEEEEEEecCCcccccc-------cccccccCccEEEEEEECCCcchhh
Q psy15725         83 ------RTVRLQLWDTAGQERFRS-------LIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        83 ------~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                            ....+.+|||||...+..       ....+++++|++++|+|+.+.+++.
T Consensus        78 ~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~  133 (396)
T 2ohf_A           78 HKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT  133 (396)
T ss_dssp             HCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred             cCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence                  023599999999876443       3445678999999999998766654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.99  E-value=5.9e-10  Score=104.89  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=73.2

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc---HHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcc-
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---FHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKR-  302 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~-  302 (355)
                      +...+.++||+|++.|...+...+..+|++++|+|+++...   ++....+.+.+......++| +++++||+|+.+.. 
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~  172 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW  172 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence            45588999999999999998899999999999999988643   11111111111111114677 99999999985321 


Q ss_pred             -c----CCHHHHHHHHhhc------CcEEEEecCCCCCCHHHHHH
Q psy15725        303 -Q----VSTEEGERKAKEL------NVMFIETSAKAGYNVKQLFR  336 (355)
Q Consensus       303 -~----v~~~~~~~~~~~~------~~~~~~~SA~~~~gv~~l~~  336 (355)
                       +    ....+...+.+..      .++++++||++|.|++++++
T Consensus       173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence             1    1112222333333      35899999999999999544

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.97  E-value=1.5e-09  Score=102.21  Aligned_cols=102  Identities=18%  Similarity=0.201  Sum_probs=75.3

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCc-eEEEEeeCCCCCCccc--C-
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV-IIMLVGNKTDLSDKRQ--V-  304 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~--v-  304 (355)
                      ...+.+|||+|++.|...+..++..+|++++|+|+++....+. .+++..+..   .+. |+++|+||+|+.+...  + 
T Consensus       103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~---~~~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL---LGIKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEEECTTTTTSCHHHHH
T ss_pred             CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEEcCcCCcccHHHHH
Confidence            4578899999999998888888999999999999998765433 334433333   344 6999999999975211  1 


Q ss_pred             -CHHHHHHHHhhcC-----cEEEEecCCCCCCHHHH
Q psy15725        305 -STEEGERKAKELN-----VMFIETSAKAGYNVKQL  334 (355)
Q Consensus       305 -~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~l  334 (355)
                       ...+...+++..+     ++++++||++|.||+++
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence             1233445555566     78999999999999983

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.93  E-value=8.6e-11  Score=107.04  Aligned_cols=96  Identities=15%  Similarity=0.115  Sum_probs=56.3

Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      ...+.+|||||...+...   ....+|++++|+|.+....++.+...   .                             
T Consensus       148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~~---~-----------------------------  192 (341)
T 2p67_A          148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKKG---L-----------------------------  192 (341)
T ss_dssp             TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCHH---H-----------------------------
T ss_pred             CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHHh---h-----------------------------
Confidence            357999999997544332   35899999999999765433221110   0                             


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceeh--hhhhhhh---h----ccCeEEEEeeeeeccccceEE
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKA---K----ELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~--~~~~~~~---~----~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                       .+.|.++|+||+|+.+......  .+.....   .    ....+++.+|+.++.+++.+.
T Consensus       193 -----------------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~  252 (341)
T 2p67_A          193 -----------------MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIW  252 (341)
T ss_dssp             -----------------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred             -----------------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHH
Confidence                             1578899999999865322111  1111110   1    114578899999988877643

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.91  E-value=2.7e-10  Score=108.10  Aligned_cols=107  Identities=18%  Similarity=0.251  Sum_probs=63.5

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCccc-
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQ-  303 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~-  303 (355)
                      ...+.+|||+|++.|...+...+..+|++|+|+|+++..   +|+....+.+.+......++| +++++||+|+.+... 
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~  199 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS  199 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence            467899999999999998888999999999999999863   222211222222111125787 999999999953210 


Q ss_pred             -----CCHHHHHHHHhhc-------CcEEEEecCCCCCCHHHHH
Q psy15725        304 -----VSTEEGERKAKEL-------NVMFIETSAKAGYNVKQLF  335 (355)
Q Consensus       304 -----v~~~~~~~~~~~~-------~~~~~~~SA~~~~gv~~l~  335 (355)
                           ....+...+++..       .++++++||++|.|+++++
T Consensus       200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 1112233444443       4689999999999998754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.90  E-value=1.5e-09  Score=103.57  Aligned_cols=105  Identities=17%  Similarity=0.114  Sum_probs=69.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHH-----HHHHHHHHHhhcCCCceEEEEeeCCCCCCcc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-----TSKWIDDVRTERGSDVIIMLVGNKTDLSDKR  302 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~-----~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  302 (355)
                      ....+.||||+|++.|...+..++..+|++++|+|++++.....     ...+...+.... ...|+++|+||+|+.+.+
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence            34678999999999999999999999999999999998754322     112222222221 235699999999986533


Q ss_pred             cCCHHHH----HHHHhhc-----CcEEEEecCCCCCCHHH
Q psy15725        303 QVSTEEG----ERKAKEL-----NVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       303 ~v~~~~~----~~~~~~~-----~~~~~~~SA~~~~gv~~  333 (355)
                      +...++.    ..+....     +++++++||++|.||++
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            2222222    2222222     46899999999999974

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.82  E-value=1.2e-08  Score=92.57  Aligned_cols=103  Identities=14%  Similarity=0.140  Sum_probs=58.7

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHH
Q psy15725        230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEG  309 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  309 (355)
                      ..+.++||+|-..-.   ......+|.+++++|.+.....+.+..   .+     .+.|.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i-----~~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GI-----FELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---TH-----HHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH---HH-----hccccEEEEEchhccCchhHHHHHH
Confidence            345677888743211   122457899999998764322111100   11     1346677889999743221111111


Q ss_pred             HHHHh----h------cCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        310 ERKAK----E------LNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       310 ~~~~~----~------~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ..+..    .      ++.+++++||+++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            12211    0      1347999999999999999999988764

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.78  E-value=1.7e-09  Score=101.73  Aligned_cols=105  Identities=15%  Similarity=0.256  Sum_probs=73.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh----cCCCc-eEEEEeeCCCCCCcc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE----RGSDV-IIMLVGNKTDLSDKR  302 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~-piilv~nK~Dl~~~~  302 (355)
                      ....+.+|||+|++.|...+..++..+|++++|+|+++ .+++....|.....++    ...++ |+++++||+|+.+..
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            34678999999999999888889999999999999998 4555433221111110    01354 599999999987521


Q ss_pred             ------cCCHHHHHHHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725        303 ------QVSTEEGERKAKELN-----VMFIETSAKAGYNVKQ  333 (355)
Q Consensus       303 ------~v~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~  333 (355)
                            ....++...+++..+     ++++++||++|.|+.+
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e  202 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  202 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence                  111233444555544     6899999999999974

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.76  E-value=2.4e-09  Score=95.59  Aligned_cols=109  Identities=18%  Similarity=0.176  Sum_probs=73.9

Q ss_pred             EEEEEEeCCCcc-------------cccccccccccCCcEEE-EEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeC
Q psy15725        230 VRLQLWDTAGQE-------------RFRSLIPSYIRDSTVAV-VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNK  295 (355)
Q Consensus       230 i~~~i~D~~g~~-------------~~~~~~~~~~~~~~~vi-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK  295 (355)
                      ..+.+|||||..             .+..++..++..++.++ +|+|.++..+..+...+...+..   .+.|+++|+||
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~---~~~~~i~V~NK  201 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITK  201 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT---TCSSEEEEEEC
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC---CCCeEEEEEEc
Confidence            467899999953             34455667777888766 68998876554443344444433   57999999999


Q ss_pred             CCCCCcccCCHHHHHHH--HhhcC-cEEEEecCCCCCCHHHHHHHHHHH
Q psy15725        296 TDLSDKRQVSTEEGERK--AKELN-VMFIETSAKAGYNVKQLFRRVAAA  341 (355)
Q Consensus       296 ~Dl~~~~~v~~~~~~~~--~~~~~-~~~~~~SA~~~~gv~~l~~~l~~~  341 (355)
                      +|+.+............  ....+ .+++++||++|.|+++++++|.+.
T Consensus       202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            99975543222221110  01123 378999999999999999998874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.76  E-value=4.7e-09  Score=102.50  Aligned_cols=107  Identities=15%  Similarity=0.169  Sum_probs=70.7

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcCCC-ceEEEEeeCCCCCCccc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SFHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~---s~~~~~~~~~~i~~~~~~~-~piilv~nK~Dl~~~~~  303 (355)
                      ....+.||||+|++.|...+..++..+|++++|+|++++.   ++.....+.+.+......+ .|+++|+||+|+.+.+.
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence            3457899999999999999999999999999999998742   1100111111111111134 45999999999975322


Q ss_pred             CCH----HHHHHHHhhc-----CcEEEEecCCCCCCHHHH
Q psy15725        304 VST----EEGERKAKEL-----NVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       304 v~~----~~~~~~~~~~-----~~~~~~~SA~~~~gv~~l  334 (355)
                      ...    .+...+....     +++++++||++|.||+++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            111    1222233332     369999999999999865

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.74  E-value=4.8e-09  Score=99.23  Aligned_cols=102  Identities=16%  Similarity=0.133  Sum_probs=70.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc---H----HHHHHHHHHHHhhcCCCce-EEEEeeCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS---F----HQTSKWIDDVRTERGSDVI-IMLVGNKTDLS  299 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s---~----~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~  299 (355)
                      +...+.+|||+|++.|...+...+..+|++++|+|+++...   |    +.. ++...+..   .++| +++++||+|+.
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~---~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHALLAFT---LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHHHHHHH---cCCCeEEEEEEccccc
Confidence            35678999999999999888888999999999999987531   2    221 22222222   4665 99999999986


Q ss_pred             Cccc----CCHHHHHHHHhhcC-----cEEEEecCCCCCCHHH
Q psy15725        300 DKRQ----VSTEEGERKAKELN-----VMFIETSAKAGYNVKQ  333 (355)
Q Consensus       300 ~~~~----v~~~~~~~~~~~~~-----~~~~~~SA~~~~gv~~  333 (355)
                      +.+.    ....+...+++..+     ++++++||++|.|+++
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            3111    11122334444443     6899999999999873

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.74  E-value=1.6e-08  Score=90.34  Aligned_cols=92  Identities=17%  Similarity=0.145  Sum_probs=73.3

Q ss_pred             cccccccccccccCccEEEEEEECCCcc-hhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      ++++..+.+.+++++|++++|+|++++. ++..+..|+..+..                                     
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------------------------------------  108 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------------------------------------  108 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------------------------------------
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------------------------------------
Confidence            5778888889999999999999999986 88888999887654                                     


Q ss_pred             cccccCCCccEEEEEeecCCCCccccee-hhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~-~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                             .++|+++|+||+|+.++..+. ..+...+....+.+++.+|+.++.+++.+
T Consensus       109 -------~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L  159 (302)
T 2yv5_A          109 -------FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDEL  159 (302)
T ss_dssp             -------TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             -------CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence                   279999999999997544322 23344555566789999999999887754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.70  E-value=3.3e-09  Score=97.23  Aligned_cols=108  Identities=17%  Similarity=0.259  Sum_probs=56.8

Q ss_pred             eEEEEEEeCCCc-------cccccccc-------ccccCC-------------cEEEEEEeCCCcccHHHHH-HHHHHHH
Q psy15725        229 QVRLQLWDTAGQ-------ERFRSLIP-------SYIRDS-------------TVAVVVYDITNANSFHQTS-KWIDDVR  280 (355)
Q Consensus       229 ~i~~~i~D~~g~-------~~~~~~~~-------~~~~~~-------------~~vi~v~d~~~~~s~~~~~-~~~~~i~  280 (355)
                      .+.+.+|||+|.       +.+..++.       .++..+             +++++.++.+ ..++..+. .++..+ 
T Consensus        94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-  171 (361)
T 2qag_A           94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-  171 (361)
T ss_dssp             EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-
T ss_pred             ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-
Confidence            457899999997       56665554       333332             3444444431 34444443 344443 


Q ss_pred             hhcCCCceEEEEeeCCCCCCcccCCH--HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        281 TERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       281 ~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                         ..++|+|+|+||+|+.+.+.+..  .....+++..+++++++||++|.| ++.|.++.+.+
T Consensus       172 ---~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i  231 (361)
T 2qag_A          172 ---HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL  231 (361)
T ss_dssp             ---CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred             ---ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence               26899999999999987665543  455666777889999999999998 76666665554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.68  E-value=2.1e-08  Score=91.98  Aligned_cols=98  Identities=22%  Similarity=0.327  Sum_probs=73.6

Q ss_pred             CcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH----HHHh
Q psy15725        239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAK  314 (355)
Q Consensus       239 g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~  314 (355)
                      ..+.|+.....++..++++++|+|++++.     ..|...+.+.. .++|+++|+||+|+.... ...+...    ..++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            46778888888899999999999998753     34555555544 489999999999996432 2222222    2345


Q ss_pred             hcCc---EEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        315 ELNV---MFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       315 ~~~~---~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ..++   +++++||++|.|+++++++|.+...
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence            5666   8999999999999999999987653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.66  E-value=1.5e-09  Score=105.66  Aligned_cols=114  Identities=23%  Similarity=0.231  Sum_probs=69.3

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc---cH--HH-HHHHHHHHHhhcCCCce-EEEEeeCCCCCCc
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN---SF--HQ-TSKWIDDVRTERGSDVI-IMLVGNKTDLSDK  301 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~---s~--~~-~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~  301 (355)
                      ...+.||||+|++.|...+...+..+|++|+|+|++++.   .+  .. ..+.+..+..   .++| +|+|+||+|+.+.
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~  330 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence            457789999999999999999999999999999998643   11  11 1122222222   4676 9999999998642


Q ss_pred             ccCC----HHHHHHHH-hhcC-----cEEEEecCCCCCCHH--------------HHHHHHHHHcCCC
Q psy15725        302 RQVS----TEEGERKA-KELN-----VMFIETSAKAGYNVK--------------QLFRRVAAALPGM  345 (355)
Q Consensus       302 ~~v~----~~~~~~~~-~~~~-----~~~~~~SA~~~~gv~--------------~l~~~l~~~i~~~  345 (355)
                      ....    ..+...+. +..+     ++++++||++|.||+              +|++.|...++..
T Consensus       331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~  398 (592)
T 3mca_A          331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPE  398 (592)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCS
T ss_pred             cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcccc
Confidence            1111    12222333 3334     489999999999998              7999998887743

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.57  E-value=3e-08  Score=86.60  Aligned_cols=115  Identities=13%  Similarity=0.106  Sum_probs=71.1

Q ss_pred             eEEEEEEeCCCcccccccc-----------cccccCCcEEEEEEeCCCcccH-HHHHHHHHHHHhhcCCCceEEEEee-C
Q psy15725        229 QVRLQLWDTAGQERFRSLI-----------PSYIRDSTVAVVVYDITNANSF-HQTSKWIDDVRTERGSDVIIMLVGN-K  295 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~-----------~~~~~~~~~vi~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piilv~n-K  295 (355)
                      ...+.++||||...+....           ..+++.+|++++|+|+++.... ..+..++..+.... .+.|+++++| |
T Consensus        70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK  148 (260)
T 2xtp_A           70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHK  148 (260)
T ss_dssp             TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECG
T ss_pred             CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcc
Confidence            4568899999976553322           2267889999999999862221 11223333332111 1456666666 9


Q ss_pred             CCCCCcccCCH-------HHHHHHHhhcCcE---E--EEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        296 TDLSDKRQVST-------EEGERKAKELNVM---F--IETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       296 ~Dl~~~~~v~~-------~~~~~~~~~~~~~---~--~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +|+... .+..       .....+.+..+..   +  +++||++|.|++++|++|.+.++..
T Consensus       149 ~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          149 EDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             GGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            998632 1111       1222344444321   2  7899999999999999999988753

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.54  E-value=5e-08  Score=96.84  Aligned_cols=112  Identities=11%  Similarity=0.164  Sum_probs=79.2

Q ss_pred             EEEEEeCCCccc---ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        231 RLQLWDTAGQER---FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       231 ~~~i~D~~g~~~---~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      .+.++||||...   ....+..++..+|++++|+|++++.+..+...|...+..   .+.|+++|+||+|+.....+..+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e  251 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD  251 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence            478999999554   334566788999999999999988877666555444433   47899999999998644322111


Q ss_pred             ----------HH-----HHHHhh--------cCcEEEEecCC--------------CCCCHHHHHHHHHHHcCCC
Q psy15725        308 ----------EG-----ERKAKE--------LNVMFIETSAK--------------AGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       308 ----------~~-----~~~~~~--------~~~~~~~~SA~--------------~~~gv~~l~~~l~~~i~~~  345 (355)
                                ..     ..+...        ...+++++||+              ++.|+++++++|.+.+...
T Consensus       252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence                      01     112111        12479999999              9999999999999877543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.54  E-value=3.4e-08  Score=90.73  Aligned_cols=98  Identities=24%  Similarity=0.295  Sum_probs=72.0

Q ss_pred             CcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH----HHHh
Q psy15725        239 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----RKAK  314 (355)
Q Consensus       239 g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~----~~~~  314 (355)
                      .++.|++....++..++++++|+|+++..+     .|...+.+.. .++|+++|+||+|+.... ...+...    ...+
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            467888888888899999999999998764     3444444433 479999999999996432 2222222    2345


Q ss_pred             hcCc---EEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        315 ELNV---MFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       315 ~~~~---~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      ..++   +++++||++|.|++++++.|.+...
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5665   7999999999999999999987654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.53  E-value=1.4e-07  Score=86.78  Aligned_cols=87  Identities=17%  Similarity=0.237  Sum_probs=53.9

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCC-ccccccceeeeeeeeeecC-------
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLED-------   82 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~-------   82 (355)
                      ....+|+++|++|||||||+|+|++......                 ..++. +..|+.+      .+.+++       
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-----------------~~~p~tTi~p~~G------~v~v~~~r~~~l~   74 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-----------------ANYPYATIDPEEA------KVAVPDERFDWLC   74 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTST-----------------TCCSSCCCCTTEE------EEEECCHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccc-----------------cCCCceeecceee------eeeeCCcchhhhh
Confidence            3457999999999999999999999553111                 11111 1122222      111111       


Q ss_pred             ------c--EEEEEEEecCCccc-------ccccccccccCccEEEEEEECCC
Q psy15725         83 ------R--TVRLQLWDTAGQER-------FRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        83 ------~--~~~~~i~D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                            +  ...+.+||+||...       +.......++.+|++++|+|+.+
T Consensus        75 ~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           75 EAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             HHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             hhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  1  13589999999643       22223345678999999999976

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.52  E-value=1.1e-07  Score=81.98  Aligned_cols=114  Identities=13%  Similarity=0.105  Sum_probs=74.3

Q ss_pred             eEEEEEEeCCCc-----------ccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC--CCceEEEEeeC
Q psy15725        229 QVRLQLWDTAGQ-----------ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--SDVIIMLVGNK  295 (355)
Q Consensus       229 ~i~~~i~D~~g~-----------~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK  295 (355)
                      ...+.+|||+|.           ..+...+..++++++++++|+|+++....  ...++..+.....  ...|+++|+||
T Consensus        77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK  154 (239)
T 3lxx_A           77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTR  154 (239)
T ss_dssp             TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeC
Confidence            456789999993           34445555667889999999998754442  1233333322110  34699999999


Q ss_pred             CCCCCcccCC------HHHHHHHHhhcCcEEEEecCCCC-----CCHHHHHHHHHHHcCC
Q psy15725        296 TDLSDKRQVS------TEEGERKAKELNVMFIETSAKAG-----YNVKQLFRRVAAALPG  344 (355)
Q Consensus       296 ~Dl~~~~~v~------~~~~~~~~~~~~~~~~~~SA~~~-----~gv~~l~~~l~~~i~~  344 (355)
                      +|+...+.+.      ......+.+.++..++.+++..+     .||.++|+.+.+.+..
T Consensus       155 ~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          155 KDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             GGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            9986544332      23455667777777777766643     7999999999888854

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.52  E-value=3.6e-08  Score=83.28  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=56.1

Q ss_pred             eEEEEEEeCCCcccccc-cccccccCCcEEEEEEeCCCcc-cHHHHHHH-HHHHHhh--cCCCceEEEEeeCCCCCCc
Q psy15725        229 QVRLQLWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNAN-SFHQTSKW-IDDVRTE--RGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~-~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~-~~~i~~~--~~~~~piilv~nK~Dl~~~  301 (355)
                      .+.+.+||++|++.+.. ++..++..++++++|+|+++.. ++.....+ ...+...  ...++|+++|+||+|+.+.
T Consensus        53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            57789999999999988 7888899999999999998843 34444443 3444331  2257999999999999754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.48  E-value=2.1e-07  Score=85.45  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      ..+|+++|.+|||||||+|+|++.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhh
Confidence            357999999999999999999985

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.48  E-value=1.3e-07  Score=86.76  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=22.3

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..+|+++|.+|||||||+|++++..
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~  184 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEF  184 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhh
Confidence            3579999999999999999999853

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.46  E-value=4.5e-07  Score=86.09  Aligned_cols=101  Identities=15%  Similarity=0.122  Sum_probs=60.6

Q ss_pred             EEEEEEeCCCcccccc-ccccc-----ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceE-EEEeeCCCCCCcc
Q psy15725        230 VRLQLWDTAGQERFRS-LIPSY-----IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII-MLVGNKTDLSDKR  302 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~-~~~~~-----~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~~~~  302 (355)
                      +.+.|+||+|...... ++...     +..++.+++|+|.+......   .....+.+    .+|+ ++|+||.|.....
T Consensus       184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~~~~~  256 (504)
T 2j37_W          184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDGHAKG  256 (504)
T ss_dssp             CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTSCCCC
T ss_pred             CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCccccch
Confidence            3566889998543211 11100     22688999999988764321   22223322    2675 8999999975321


Q ss_pred             cCCHHHHHHHHhhcCcE------------------EEEecCCCCCC-HHHHHHHHHHH
Q psy15725        303 QVSTEEGERKAKELNVM------------------FIETSAKAGYN-VKQLFRRVAAA  341 (355)
Q Consensus       303 ~v~~~~~~~~~~~~~~~------------------~~~~SA~~~~g-v~~l~~~l~~~  341 (355)
                        ..  +.......+.|                  .+++||..|.| ++++++++.+.
T Consensus       257 --g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          257 --GG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             --TH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             --HH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence              11  12222233333                  34579999999 99999999876

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.40  E-value=2.3e-07  Score=76.74  Aligned_cols=76  Identities=18%  Similarity=0.330  Sum_probs=61.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccC----CcEEEEEEeCC-CcccHHHHHHHHHHHHhh----cCCCceEEEEeeCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRD----STVAVVVYDIT-NANSFHQTSKWIDDVRTE----RGSDVIIMLVGNKTDL  298 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~----~~~vi~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl  298 (355)
                      ..+.+.+||++|.+.+...+..++..    ++++++|+|++ +..++..+..|+..+...    ...++|+++|+||+|+
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence            34567899999999998888777766    89999999999 888888888888776543    2258999999999999


Q ss_pred             CCccc
Q psy15725        299 SDKRQ  303 (355)
Q Consensus       299 ~~~~~  303 (355)
                      .+.+.
T Consensus       169 ~~~~~  173 (193)
T 2ged_A          169 FTARP  173 (193)
T ss_dssp             TTCCC
T ss_pred             cCCCC
Confidence            75543

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.36  E-value=3.8e-07  Score=75.44  Aligned_cols=100  Identities=6%  Similarity=-0.050  Sum_probs=57.4

Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      +.+|++.++.+|..|+.++|++|||+|.+|++.++ ....+.++....                                
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL--------------------------------  154 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMT--------------------------------  154 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHS--------------------------------
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHh--------------------------------
Confidence            45689999999999999999999999999986655 333332222210                                


Q ss_pred             cccccccc-CCCccEEEEEeecC-CCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725        171 WIDDVRTE-RGSDVIIMLVGNKT-DLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       171 ~~~~~~~~-~~~~~piilv~nK~-D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  229 (355)
                           ... ...++|++|.+||. |++..-.   +......... .....+..|||.+|.+..+
T Consensus       155 -----~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~E  212 (227)
T 3l82_B          155 -----DPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLN  212 (227)
T ss_dssp             -----CTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHH
T ss_pred             -----cchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHH
Confidence                 111 13589999999995 6653321   1111111111 2456789999999887653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.36  E-value=4.8e-07  Score=81.16  Aligned_cols=113  Identities=19%  Similarity=0.222  Sum_probs=70.5

Q ss_pred             EEEEEEeCCCccc-------------ccccccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeC
Q psy15725        230 VRLQLWDTAGQER-------------FRSLIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNK  295 (355)
Q Consensus       230 i~~~i~D~~g~~~-------------~~~~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK  295 (355)
                      ..+.++||+|...             +...+..++..+|++++|+|.++.. .......+...+..   .+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcC
Confidence            4678999999643             4445667788999999999974332 21121223333332   58999999999


Q ss_pred             CCCCCcccCCHHHHHHHHhhcCc---EEEEecCCC---CCCHHHHHHHHHHHcCCC
Q psy15725        296 TDLSDKRQVSTEEGERKAKELNV---MFIETSAKA---GYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       296 ~Dl~~~~~v~~~~~~~~~~~~~~---~~~~~SA~~---~~gv~~l~~~l~~~i~~~  345 (355)
                      +|+..................+.   ++..+||.+   +.|++++++.+.+.++..
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            99975543222222110011113   444555556   899999999999888653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.33  E-value=1.1e-07  Score=87.29  Aligned_cols=108  Identities=21%  Similarity=0.214  Sum_probs=74.8

Q ss_pred             EEEEEeCCCcccc-------------cccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725        231 RLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD  297 (355)
Q Consensus       231 ~~~i~D~~g~~~~-------------~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D  297 (355)
                      .+.+||++|...+             ..+...++..+++++++++..+.....  ..|+..+......+.|+++|+||+|
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D  214 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID  214 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence            5789999997665             455677889999999999875443221  2334434333336889999999999


Q ss_pred             CCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHH
Q psy15725        298 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       298 l~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      +..................+.+|+++|+..+.|+++.+..+..
T Consensus       215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~  257 (360)
T 3t34_A          215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA  257 (360)
T ss_dssp             GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred             cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence            9765544433333334445678999999999998877655443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.26  E-value=6.8e-07  Score=78.84  Aligned_cols=99  Identities=11%  Similarity=0.100  Sum_probs=67.6

Q ss_pred             CCCcc-cccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh
Q psy15725        237 TAGQE-RFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE  315 (355)
Q Consensus       237 ~~g~~-~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  315 (355)
                      .||+. .........+..+|+++.|+|++++.+...     ..+.... .++|+++|+||+|+.+....  +....+.+.
T Consensus         6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-----~~l~~~l-~~kp~ilVlNK~DL~~~~~~--~~~~~~~~~   77 (282)
T 1puj_A            6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-----PMIEDIL-KNKPRIMLLNKADKADAAVT--QQWKEHFEN   77 (282)
T ss_dssp             ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-----HHHHHHC-SSSCEEEEEECGGGSCHHHH--HHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-----HHHHHHH-CCCCEEEEEECcccCCHHHH--HHHHHHHHh
Confidence            35543 233344556788999999999998877543     1111222 47999999999999753221  112233444


Q ss_pred             cCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        316 LNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       316 ~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      .+++++++||+++.|++++++.+.+.+.
T Consensus        78 ~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           78 QGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            5789999999999999999999888765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.23  E-value=6.1e-06  Score=76.41  Aligned_cols=25  Identities=24%  Similarity=0.593  Sum_probs=22.3

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      .++++++|++|+|||||+|.+.+..
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3679999999999999999999854

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.22  E-value=1e-06  Score=81.90  Aligned_cols=93  Identities=14%  Similarity=0.231  Sum_probs=48.4

Q ss_pred             cccccCCcEEEEEEeCCCc-ccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH--HHHHHHHhhcCcEEEEe
Q psy15725        248 PSYIRDSTVAVVVYDITNA-NSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKELNVMFIET  323 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~  323 (355)
                      +.++.++++.++++..... .++.... .|+..+.    .++|+|+|+||+|+.+.+.+..  ..+...+...+++++++
T Consensus       131 Ral~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~  206 (418)
T 2qag_C          131 RRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEF  206 (418)
T ss_dssp             CCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeC
Confidence            4455555543333433332 3444443 5666664    4799999999999977665544  45566677778999999


Q ss_pred             cCCCCCCHHHHHHHHHHHcCC
Q psy15725        324 SAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       324 SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      ||+++.|++++|..|...+|-
T Consensus       207 sa~~~~~v~~~~~~l~~~iPf  227 (418)
T 2qag_C          207 PETDDEEENKLVKKIKDRLPL  227 (418)
T ss_dssp             C-----------------CCE
T ss_pred             CCCCCcCHHHHHHHHHhhCCc
Confidence            999999999999999988874

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.20  E-value=1.5e-06  Score=84.32  Aligned_cols=95  Identities=21%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHH
Q psy15725        231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE  310 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  310 (355)
                      .+.+|||||++.|..++...+..+|++++|+|++++..-+....|. .+..   .++|+++++||+|+.....       
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~---~~vPiIVViNKiDl~~~~~-------  139 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM---YRTPFVVAANKIDRIHGWR-------  139 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH---TTCCEEEEEECGGGSTTCC-------
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH---cCCeEEEEecccccccccc-------
Confidence            5889999999999999999999999999999999854433332222 2332   5899999999999853211       


Q ss_pred             HHHhhcCcEEEEecCCCCCCHHHHHHHHH
Q psy15725        311 RKAKELNVMFIETSAKAGYNVKQLFRRVA  339 (355)
Q Consensus       311 ~~~~~~~~~~~~~SA~~~~gv~~l~~~l~  339 (355)
                         ...+.+++++|++++.++.+.|..++
T Consensus       140 ---~~~~~~~~e~sa~~~~~v~~~~~e~i  165 (594)
T 1g7s_A          140 ---VHEGRPFMETFSKQDIQVQQKLDTKV  165 (594)
T ss_dssp             ---CCTTCCHHHHHTTSCHHHHHHHHHHH
T ss_pred             ---cccCCchHHHHHHhHHHHHHHHHHHH
Confidence               01245677888888888877766544

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.20  E-value=1.5e-06  Score=83.46  Aligned_cols=109  Identities=19%  Similarity=0.173  Sum_probs=75.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ....+.++||+|+..|...+..++..+|++++|+|+++....+. ..+...+..   .++|+++++||+|+...+.  .+
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~---~~ipiivviNK~Dl~~~~~--~~  153 (529)
T 2h5e_A           80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL---RDTPILTFMNKLDRDIRDP--ME  153 (529)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT---TTCCEEEEEECTTSCCSCH--HH
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH---cCCCEEEEEcCcCCccccH--HH
Confidence            35678999999999998888888999999999999988754332 222222222   5899999999999864432  22


Q ss_pred             HHHHHHhhcCcE-----EEEecCCCCCCHHHHHHHHHHHc
Q psy15725        308 EGERKAKELNVM-----FIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       308 ~~~~~~~~~~~~-----~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ...++.+.++.+     +..+||+++.|+.+++...+...
T Consensus       154 ~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~  193 (529)
T 2h5e_A          154 LLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLY  193 (529)
T ss_dssp             HHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEEC
T ss_pred             HHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhh
Confidence            233344444432     33479999999888876654443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.12  E-value=1.2e-05  Score=70.28  Aligned_cols=25  Identities=20%  Similarity=0.636  Sum_probs=22.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      .++++++|++|+|||||+|.+.+..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4789999999999999999999854

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.12  E-value=9.3e-06  Score=75.54  Aligned_cols=93  Identities=16%  Similarity=0.103  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCcccccc-----ccc-ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCccc
Q psy15725        230 VRLQLWDTAGQERFRS-----LIP-SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~-----~~~-~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~  303 (355)
                      +-+.|+||+|......     +.. ......+.+++|+|.+.....   ......+.+   .-.+..+|+||.|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~---~~~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKE---ATPIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH---SCTTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHh---hCCCeEEEEECCCCccc--
Confidence            3455788888432111     100 112356889999998765332   223333333   22456799999997422  


Q ss_pred             CCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725        304 VSTEEGERKAKELNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l  334 (355)
                        ...+.......+.|+.+++.  |++++++
T Consensus       255 --gG~~ls~~~~~g~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT--GEKIDDI  281 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred             --ccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence              23344555567889988885  7766544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.12  E-value=1.6e-07  Score=85.89  Aligned_cols=108  Identities=18%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             EEEEEEeCCCcc-------------cccccccccccCCcEEEE-EEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeC
Q psy15725        230 VRLQLWDTAGQE-------------RFRSLIPSYIRDSTVAVV-VYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNK  295 (355)
Q Consensus       230 i~~~i~D~~g~~-------------~~~~~~~~~~~~~~~vi~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK  295 (355)
                      ..+.++||||..             .+..+...++...+.+++ +.+.+....-.+...+.+.+.   ..+.|+++|+||
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~---~~~~~~i~V~NK  206 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD---PQGQRTIGVITK  206 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC---TTCTTEEEEEEC
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC---cCCCceEEEecc
Confidence            467899999953             334455566655555544 556554333222222333333   268999999999


Q ss_pred             CCCCCcccCCHHHHHH--HHhhcCc-EEEEecCCCCCCHHHHHHHHHH
Q psy15725        296 TDLSDKRQVSTEEGER--KAKELNV-MFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       296 ~Dl~~~~~v~~~~~~~--~~~~~~~-~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      +|+.+...........  +....++ +++++||+++.|++++++++.+
T Consensus       207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            9997543321111110  0111343 7899999999999999999987

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.08  E-value=6.3e-07  Score=82.92  Aligned_cols=53  Identities=21%  Similarity=0.307  Sum_probs=36.4

Q ss_pred             CceEEEEeeCCCCCCcccCCHHHHHHHH---hhcCcEEEEecCCCCCCHHHHHH-HHHHHcC
Q psy15725        286 DVIIMLVGNKTDLSDKRQVSTEEGERKA---KELNVMFIETSAKAGYNVKQLFR-RVAAALP  343 (355)
Q Consensus       286 ~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~~~SA~~~~gv~~l~~-~l~~~i~  343 (355)
                      .+|+++|+||+|+. .    ......+.   ...+.+++++||+.+.|+.++++ .|.++++
T Consensus       214 ~kP~i~v~NK~D~~-~----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p  270 (397)
T 1wxq_A          214 NKPMVIAANKADAA-S----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIP  270 (397)
T ss_dssp             HSCEEEEEECGGGS-C----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC
T ss_pred             CCCEEEEEeCcccc-c----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcC
Confidence            49999999999975 2    12222222   22367999999999999988766 4444444

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.07  E-value=1.7e-06  Score=75.40  Aligned_cols=25  Identities=16%  Similarity=0.396  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSF   38 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~   38 (355)
                      ++++++|.+|||||||+|++.+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            5999999999999999999998543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.04  E-value=4e-06  Score=73.85  Aligned_cols=26  Identities=31%  Similarity=0.603  Sum_probs=23.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..++|+++|.+|||||||+|++++..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCc
Confidence            45899999999999999999999854

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.02  E-value=1.8e-06  Score=74.93  Aligned_cols=99  Identities=6%  Similarity=-0.058  Sum_probs=60.9

Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |.+||+..+.+|..|+.++|++|||+|.+|++.++ ....+.++...                                 
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~m---------------------------------  238 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAM---------------------------------  238 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHH---------------------------------
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHH---------------------------------
Confidence            35789999999999999999999999999987765 22222221110                                 


Q ss_pred             cccccccc-CCCccEEEEEeec-CCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccc
Q psy15725        171 WIDDVRTE-RGSDVIIMLVGNK-TDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVK  228 (355)
Q Consensus       171 ~~~~~~~~-~~~~~piilv~nK-~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~  228 (355)
                          +... ...++|++|.+|| .|++..-.   +......... .....+..+||.+|.+..
T Consensus       239 ----L~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l-~r~W~Iq~csA~tGeGL~  296 (312)
T 3l2o_B          239 ----TDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFL  296 (312)
T ss_dssp             ----HCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHH
T ss_pred             ----hcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccC-CCcEEEEecccCCCcCHH
Confidence                0001 1248999999997 57754321   1111111111 245678999999988765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.99  E-value=1.8e-05  Score=75.85  Aligned_cols=88  Identities=19%  Similarity=0.130  Sum_probs=64.7

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ....+.+|||+|+..|...+..++..+|++++|+|+++..+.+....|. .+..   .++|+++++||+|+...+.  ..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~~~~--~~  153 (528)
T 3tr5_A           80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDTRPS--IE  153 (528)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCCSCH--HH
T ss_pred             CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCccccH--HH
Confidence            3577899999999999999999999999999999999988776654443 3333   5799999999999854321  22


Q ss_pred             HHHHHHhhcCcEEE
Q psy15725        308 EGERKAKELNVMFI  321 (355)
Q Consensus       308 ~~~~~~~~~~~~~~  321 (355)
                      ...++.+..+..+.
T Consensus       154 ~l~ei~~~l~~~~~  167 (528)
T 3tr5_A          154 LLDEIESILRIHCA  167 (528)
T ss_dssp             HHHHHHHHHCCEEE
T ss_pred             HHHHHHHhhCCCce
Confidence            33344445554433

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.97  E-value=2.6e-06  Score=77.29  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=63.7

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH-
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE-  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~-  307 (355)
                      .+.+.++||+|.......   ....+|.+++|+|.+.....+.+..   ..     .++|+++|+||+|+.+....... 
T Consensus       148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence            345678999995433322   3578999999999875533211110   11     24689999999998643221110 


Q ss_pred             -HHHHHHhh-------cCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        308 -EGERKAKE-------LNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       308 -~~~~~~~~-------~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                       +.......       +..+++++||++|.|+++++++|.+.++
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence             11111111       1358999999999999999999998765

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.95  E-value=3.7e-06  Score=74.72  Aligned_cols=90  Identities=17%  Similarity=0.209  Sum_probs=62.1

Q ss_pred             cccccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC--CHHHHHHHHhhcCcEEEE
Q psy15725        246 LIPSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELNVMFIE  322 (355)
Q Consensus       246 ~~~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~  322 (355)
                      +.+..++++|.+++|+|+..+. +...+..++.....   .++|.++|+||+|+.++...  .........+..|.+++.
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            4445789999999999998665 33334444444433   68999999999999754320  011223333445789999


Q ss_pred             ecCCCCCCHHHHHHHH
Q psy15725        323 TSAKAGYNVKQLFRRV  338 (355)
Q Consensus       323 ~SA~~~~gv~~l~~~l  338 (355)
                      +||+++.|++++++.+
T Consensus       156 ~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          156 TSSKDQDSLADIIPHF  171 (307)
T ss_dssp             CCHHHHTTCTTTGGGG
T ss_pred             EecCCCCCHHHHHhhc
Confidence            9999999998877643

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.90  E-value=3.5e-06  Score=83.41  Aligned_cols=107  Identities=18%  Similarity=0.179  Sum_probs=70.7

Q ss_pred             EEEEEeCCCccc-------------ccccccccc-cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q psy15725        231 RLQLWDTAGQER-------------FRSLIPSYI-RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT  296 (355)
Q Consensus       231 ~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  296 (355)
                      .+.++||||-..             +..+...++ ..+|++++|+|.+.....++.......+..   .+.|+++|+||+
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~---~g~pvIlVlNKi  227 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITKL  227 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT---TCSSEEEEEECT
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh---cCCCEEEEEeCc
Confidence            577899999432             222333333 578999999999876554443334444443   589999999999


Q ss_pred             CCCCcccCCHHHHHH-H-HhhcC-cEEEEecCCCCCCHHHHHHHHHH
Q psy15725        297 DLSDKRQVSTEEGER-K-AKELN-VMFIETSAKAGYNVKQLFRRVAA  340 (355)
Q Consensus       297 Dl~~~~~v~~~~~~~-~-~~~~~-~~~~~~SA~~~~gv~~l~~~l~~  340 (355)
                      |+.+........... . ....+ .+++++||++|.|+++++++|.+
T Consensus       228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            997554432221110 0 00124 37899999999999999999987

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.84  E-value=1.2e-05  Score=81.37  Aligned_cols=68  Identities=21%  Similarity=0.251  Sum_probs=58.4

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  299 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  299 (355)
                      ..+.+.+|||+|+..|...+..++..+|++++|+|+++..+.+....|.... .   .++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            3678899999999999999999999999999999999998888765555433 2   579999999999985

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.84  E-value=3.6e-05  Score=67.04  Aligned_cols=76  Identities=12%  Similarity=0.077  Sum_probs=52.6

Q ss_pred             ceEEEEEEeCCCccccccccccccc---------CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCC--ceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIR---------DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD--VIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~---------~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~  296 (355)
                      +...+.+|||+|...+......++.         .++++++|++++..........|+..+......+  .|+++|+||+
T Consensus        82 ~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~  161 (262)
T 3def_A           82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA  161 (262)
T ss_dssp             TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECT
T ss_pred             CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCc
Confidence            4458899999998877655444433         7899999998876552222346677766544333  4999999999


Q ss_pred             CCCCccc
Q psy15725        297 DLSDKRQ  303 (355)
Q Consensus       297 Dl~~~~~  303 (355)
                      |+..++.
T Consensus       162 Dl~~~~~  168 (262)
T 3def_A          162 QFSPPDE  168 (262)
T ss_dssp             TCCCSTT
T ss_pred             ccCCCCC
Confidence            9864433

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.81  E-value=3.5e-06  Score=83.54  Aligned_cols=69  Identities=23%  Similarity=0.243  Sum_probs=57.5

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ...+.+|||+|+..|...+..++..+|++++|+|+++..+.+....|.. +..   .++|+++++||+|+...
T Consensus        74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred             CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCcccc
Confidence            5778999999999998888888999999999999999888776655543 333   48999999999998643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.77  E-value=1.1e-05  Score=70.13  Aligned_cols=84  Identities=17%  Similarity=0.049  Sum_probs=59.7

Q ss_pred             ccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCC
Q psy15725        247 IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK  326 (355)
Q Consensus       247 ~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~  326 (355)
                      ....++.+|+++.|+|++++.+....     .+. ..  ++|.++|+||+|+.++...  +....+.+..+.++ ++||+
T Consensus        15 ~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll--~k~~iivlNK~DL~~~~~~--~~~~~~~~~~g~~v-~iSa~   83 (262)
T 3cnl_A           15 IKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS--RKETIILLNKVDIADEKTT--KKWVEFFKKQGKRV-ITTHK   83 (262)
T ss_dssp             HHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT--TSEEEEEEECGGGSCHHHH--HHHHHHHHHTTCCE-EECCT
T ss_pred             HHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc--CCCcEEEEECccCCCHHHH--HHHHHHHHHcCCeE-EEECC
Confidence            34567889999999999988765431     011 11  7999999999999754221  12223444567788 99999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy15725        327 AGYNVKQLFRRVAAA  341 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~  341 (355)
                      ++.|+++++++|...
T Consensus        84 ~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           84 GEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TSCHHHHHHHHCCCT
T ss_pred             CCcCHHHHHHHHHHh
Confidence            999999999887654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.75  E-value=6.5e-05  Score=68.03  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=57.6

Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC-HHHHHHHHhhcCcEEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS-TEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                      ..+++|.+++|++.....+...+..++-....   .++|.++|+||+||.++.... .+.........|.+++++||+++
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            46789999988765433344445555544444   478999999999997543210 11122333456789999999999


Q ss_pred             CCHHHHHHHH
Q psy15725        329 YNVKQLFRRV  338 (355)
Q Consensus       329 ~gv~~l~~~l  338 (355)
                      .|++++...+
T Consensus       204 ~gl~~L~~~~  213 (358)
T 2rcn_A          204 DGLKPLEEAL  213 (358)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHHhc
Confidence            9999988764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.74  E-value=3.9e-05  Score=74.05  Aligned_cols=27  Identities=15%  Similarity=0.225  Sum_probs=24.1

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      .+.++|+|+|.+|||||||+|+|++..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            456889999999999999999999854

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.71  E-value=8e-05  Score=69.23  Aligned_cols=68  Identities=9%  Similarity=0.014  Sum_probs=43.1

Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                      ..+.+++|+|.......   ......+.+.   -.+..+|.||.|...    ....+.......+.|+.+++.  |++++
T Consensus       211 ~pd~vlLVlDa~~gq~a---~~~a~~f~~~---~~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          211 KPDDVILVIDASIGQKA---YDLASRFHQA---SPIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT--GEKID  278 (433)
T ss_dssp             CCSEEEEEEEGGGGGGG---HHHHHHHHHH---CSSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred             CCcceEEEEeCccchHH---HHHHHHHhcc---cCCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence            45789999998765332   2233334332   245789999999642    233445555667899988886  66653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.66  E-value=4.4e-05  Score=64.43  Aligned_cols=54  Identities=80%  Similarity=1.250  Sum_probs=48.8

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      +...+.+.||||+|++.|+.+++.++.+++++++|||+++..+++.+..|+..+
T Consensus        58 ~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i  111 (216)
T 4dkx_A           58 EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV  111 (216)
T ss_dssp             SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             cceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHH
Confidence            445788999999999999999999999999999999999999999988887554

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.66  E-value=0.00015  Score=63.39  Aligned_cols=76  Identities=11%  Similarity=0.038  Sum_probs=51.4

Q ss_pred             ceEEEEEEeCCCccccccccc---------ccccCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCC--ceEEEEeeC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIP---------SYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSD--VIIMLVGNK  295 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~---------~~~~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~--~piilv~nK  295 (355)
                      ....+.+|||+|...+.....         .....+|++++|+|++... +.. ...|+..+......+  .|+++|+||
T Consensus        85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK  163 (270)
T 1h65_A           85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTH  163 (270)
T ss_dssp             TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred             CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence            356789999999876553322         1234789999999987643 333 236777776543223  799999999


Q ss_pred             CCCCCcccC
Q psy15725        296 TDLSDKRQV  304 (355)
Q Consensus       296 ~Dl~~~~~v  304 (355)
                      +|+..++..
T Consensus       164 ~Dl~~~~~~  172 (270)
T 1h65_A          164 AQFSPPDGL  172 (270)
T ss_dssp             CSCCCGGGC
T ss_pred             cccCCcCCC
Confidence            999765543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.64  E-value=0.0001  Score=73.01  Aligned_cols=69  Identities=22%  Similarity=0.308  Sum_probs=58.1

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ...+.+|||+|+..|...+..++..+|++++|+|+++..+.+....|.. +..   .++|+++++||+|+...
T Consensus        76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTTC
T ss_pred             CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCcccC
Confidence            5788999999999998888899999999999999999888777655553 333   48999999999998643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.63  E-value=0.00016  Score=64.00  Aligned_cols=92  Identities=12%  Similarity=0.091  Sum_probs=55.0

Q ss_pred             EEEEEEeCCCccc--ccc-ccc-----ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCC
Q psy15725        230 VRLQLWDTAGQER--FRS-LIP-----SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSD  300 (355)
Q Consensus       230 i~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~  300 (355)
                      +-+.++||+|...  ... +..     .....++.+++|+|....   .+.......+..    ..| ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            3456889988655  211 111     123468899999997643   222222333332    356 778999999642


Q ss_pred             cccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725        301 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       301 ~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l  334 (355)
                          ............+.|+.+++  .|++++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence                23344556667788888876  67777654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.53  E-value=0.0002  Score=58.99  Aligned_cols=115  Identities=17%  Similarity=0.320  Sum_probs=88.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+..  ..
T Consensus        71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~  148 (192)
T 2b6h_A           71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PV  148 (192)
T ss_dssp             TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CH
Confidence            45788999999999999999999999999999999999999999988888876532 2589999999999996432  22


Q ss_pred             HHHHH-H----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        307 EEGER-K----AKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       307 ~~~~~-~----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      .+... +    +...++++++|||++|.||+++|++|.+.+.+
T Consensus       149 ~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          149 SELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             HHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence            22211 1    22345789999999999999999999998864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.50  E-value=0.00019  Score=71.19  Aligned_cols=69  Identities=22%  Similarity=0.234  Sum_probs=56.1

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      .+.+.+|||+|+..|...+..++..+|++++|+|+++....+....|.. +..   .++|+++++||+|+...
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCcccc
Confidence            4788999999999998888889999999999999998876655444432 222   58999999999998643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.48  E-value=5.3e-05  Score=70.67  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      ...|+++|.+||||||++++|...
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~  122 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARY  122 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998873

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.47  E-value=0.00049  Score=63.64  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..++++|++|+|||||+|.+.+..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCC
Confidence            479999999999999999999843

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.47  E-value=6.2e-05  Score=68.57  Aligned_cols=96  Identities=14%  Similarity=0.075  Sum_probs=60.8

Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      ...+.+|||||...   .....+..+|++++|+|....+.++.+..+                                 
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---------------------------------  214 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---------------------------------  214 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---------------------------------
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---------------------------------
Confidence            45789999999432   222345889999999998775544332211                                 


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceeh--hhhhhhhh-------ccCeEEEEeeeeeccccceEE
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAK-------ELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~--~~~~~~~~-------~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                      ..+.|+++|+||+|+.+......  .+......       ..+.+++.+|+.++.+++.++
T Consensus       215 ----------------~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~  275 (355)
T 3p32_A          215 ----------------VLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELW  275 (355)
T ss_dssp             ----------------SGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHH
T ss_pred             ----------------HhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHH
Confidence                            12568999999999864322111  11111111       225689999999999887653

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.41  E-value=1.8e-05  Score=74.96  Aligned_cols=100  Identities=13%  Similarity=0.084  Sum_probs=58.3

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..++|+++|.+|+||||+.++|........                        .++..++.........+......+||
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~------------------------~~t~~~~~d~~r~~~~g~~~~~~ifd   93 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG------------------------VPTREFNVGQYRRDMVKTYKSFEFFL   93 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT------------------------CCEEEEEHHHHHHHHHCSCCCGGGGC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccC------------------------CCceEEecchhhhhhccCCCcccccC
Confidence            457899999999999999999876321000                        01111110000000111112345788


Q ss_pred             cCCccc--ccccc--------cccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         92 TAGQER--FRSLI--------PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        92 ~~g~~~--~~~~~--------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      ..|.+.  +...+        ..++....+.++|+|.++. +++....|++.++.
T Consensus        94 ~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A           94 PDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            888732  22222        4455567888999999997 56666777776654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.37  E-value=0.00013  Score=66.70  Aligned_cols=110  Identities=11%  Similarity=0.030  Sum_probs=81.5

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceE-EEEee-CCCCCCcccCCH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVII-MLVGN-KTDLSDKRQVST  306 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~n-K~Dl~~~~~v~~  306 (355)
                      ...+.+|||||++.|.......+..+|++++|+| +.... ....++...+..   .++|. +++.| |+|+ +.+.+..
T Consensus        59 ~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~-~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~  132 (370)
T 2elf_A           59 GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD-AHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDE  132 (370)
T ss_dssp             SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC-HHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHH
T ss_pred             CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc-HHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHH
Confidence            4568999999999998777778899999999999 54433 333445544444   46787 99999 9998 5433221


Q ss_pred             --HHHHHHHhhc---CcEEEE--ecCCC---CCCHHHHHHHHHHHcCC
Q psy15725        307 --EEGERKAKEL---NVMFIE--TSAKA---GYNVKQLFRRVAAALPG  344 (355)
Q Consensus       307 --~~~~~~~~~~---~~~~~~--~SA~~---~~gv~~l~~~l~~~i~~  344 (355)
                        ++...+.+..   .+++++  +||++   +.|++++++.|.+.++.
T Consensus       133 ~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          133 LKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence              3344444443   369999  99999   99999999999988764

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.36  E-value=0.00029  Score=65.71  Aligned_cols=26  Identities=15%  Similarity=0.126  Sum_probs=23.1

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .+-.-|+|+|++++|||+|+|+|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            45677999999999999999999974

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=97.36  E-value=0.00045  Score=57.90  Aligned_cols=74  Identities=27%  Similarity=0.554  Sum_probs=65.8

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      +...+.+.+||++|++.+..++..++..++++++|||+++..+++. +..|+..+.... .++|+++|+||+|+.+
T Consensus        71 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~  145 (214)
T 3q3j_B           71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT  145 (214)
T ss_dssp             --CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGG
T ss_pred             CCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcc
Confidence            3456788999999999999999999999999999999999999998 688999988765 6899999999999853

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.34  E-value=0.00021  Score=57.59  Aligned_cols=54  Identities=35%  Similarity=0.610  Sum_probs=49.6

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE  282 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~  282 (355)
                      .+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|+..+...
T Consensus        55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~  108 (178)
T 2hxs_A           55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKV  108 (178)
T ss_dssp             EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999888898888764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.29  E-value=0.00083  Score=54.27  Aligned_cols=53  Identities=28%  Similarity=0.392  Sum_probs=46.2

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+
T Consensus        51 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~  103 (181)
T 3t5g_A           51 GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL  103 (181)
T ss_dssp             TEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999988877776543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.28  E-value=0.00045  Score=57.14  Aligned_cols=112  Identities=18%  Similarity=0.228  Sum_probs=91.5

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      .+.+.+||++|++.++.++..++..++++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+..  .+..+
T Consensus        68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~  145 (198)
T 1f6b_A           68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEE  145 (198)
T ss_dssp             TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHH
T ss_pred             CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHH
Confidence            4778999999999999999999999999999999999999999999998886542 26899999999999964  45566


Q ss_pred             HHHHHHhh-----------------cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        308 EGERKAKE-----------------LNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       308 ~~~~~~~~-----------------~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      +.......                 .++++++|||++|.||+++|++|.+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          146 RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence            66555432                 346899999999999999999998765

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.26  E-value=0.00021  Score=58.68  Aligned_cols=48  Identities=27%  Similarity=0.261  Sum_probs=40.8

Q ss_pred             CccEEEEEeecCCCCcccceehhhhhhhhhccCe-EEEEeeeeeccccceE
Q psy15725        181 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKAGYNVKQV  230 (355)
Q Consensus       181 ~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~sa~~~~~v~~i  230 (355)
                      .++|+++|+||+|+.+.  +..++..+++...+. +++++|+.++.+++++
T Consensus       134 ~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  182 (198)
T 3t1o_A          134 DDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKFPVLEAVATEGKGVFET  182 (198)
T ss_dssp             TSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHH
T ss_pred             CCCCEEEEEEchhcccc--cCHHHHHHHHHhcCCceEEEEecCCCcCHHHH
Confidence            48999999999999653  666778888888888 9999999999887754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.25  E-value=0.00097  Score=53.65  Aligned_cols=52  Identities=46%  Similarity=0.980  Sum_probs=44.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+
T Consensus        56 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  107 (181)
T 3tw8_B           56 EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI  107 (181)
T ss_dssp             EEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999988887766665443

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.23  E-value=0.0008  Score=54.69  Aligned_cols=74  Identities=26%  Similarity=0.594  Sum_probs=65.3

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      +...+.+.+||++|++.+..++..++..++++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+
T Consensus        51 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT  125 (184)
T ss_dssp             SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred             CCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhc
Confidence            34567889999999999999999999999999999999999999988 67888887654 5899999999999853

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.23  E-value=0.00076  Score=55.28  Aligned_cols=112  Identities=19%  Similarity=0.237  Sum_probs=94.4

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      .+.+.+||++|++.++.++..++..++++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+..  .+..+
T Consensus        66 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~  143 (190)
T 1m2o_B           66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEA  143 (190)
T ss_dssp             TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHH
Confidence            4778999999999999999999999999999999999999999999988876542 26899999999999964  45555


Q ss_pred             HHHHHHhh------------cCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        308 EGERKAKE------------LNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       308 ~~~~~~~~------------~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      +.......            .++++++|||++|.||+++|++|.+.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l  190 (190)
T 1m2o_B          144 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI  190 (190)
T ss_dssp             HHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence            55554432            357899999999999999999998754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.21  E-value=0.00031  Score=55.73  Aligned_cols=116  Identities=19%  Similarity=0.328  Sum_probs=92.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||++|++.+..++..++..+|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..
T Consensus        42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~  119 (164)
T 1r8s_A           42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NA  119 (164)
T ss_dssp             SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CH
T ss_pred             CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CH
Confidence            34678999999999999999999999999999999999999999888888876532 2589999999999996432  22


Q ss_pred             HHHHH-H----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        307 EEGER-K----AKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~~~~-~----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .+... +    ++..++++++|||++|.||+++|++|.+.+.++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred             HHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence            22211 1    223457899999999999999999999998754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.21  E-value=0.00057  Score=56.15  Aligned_cols=125  Identities=14%  Similarity=0.222  Sum_probs=97.8

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC--------CCceEEEEeeCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--------SDVIIMLVGNKTDL  298 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~piilv~nK~Dl  298 (355)
                      ...+.+.+||++|++.+..++..++..+|++++|||+++..+++.+..|+..+.....        .++|+++|+||+|+
T Consensus        60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl  139 (199)
T 4bas_A           60 KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDA  139 (199)
T ss_dssp             ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTS
T ss_pred             eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCC
Confidence            3467889999999999999999999999999999999999999999889888765421        28999999999999


Q ss_pred             CCccc---CCHHHHHHH-HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCC
Q psy15725        299 SDKRQ---VSTEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENK  351 (355)
Q Consensus       299 ~~~~~---v~~~~~~~~-~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~  351 (355)
                      .+...   +........ ++..++++++|||++|.||+++|++|.+.+.....+..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~  196 (199)
T 4bas_A          140 AGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGKAGT  196 (199)
T ss_dssp             TTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC-----
T ss_pred             CCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcccCC
Confidence            75422   211111111 145678999999999999999999999999876655443

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.21  E-value=0.00075  Score=53.84  Aligned_cols=116  Identities=17%  Similarity=0.303  Sum_probs=94.1

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCccc---C
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQ---V  304 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~---v  304 (355)
                      ...+.+||++|.+.+...+..++..+|++++|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+...   +
T Consensus        50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  129 (171)
T 1upt_A           50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEM  129 (171)
T ss_dssp             TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHH
T ss_pred             CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHH
Confidence            5778999999999999999999999999999999999999999888888776543 26899999999999965422   1


Q ss_pred             CHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      ........++..+++++++||++|.||+++|++|.+.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          130 ANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             HHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            1111111233456799999999999999999999998864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.18  E-value=0.00086  Score=54.97  Aligned_cols=122  Identities=28%  Similarity=0.515  Sum_probs=107.0

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCCc--c
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDK--R  302 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~  302 (355)
                      +...+.+.+||++|++.+..++..++..++++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.  +
T Consensus        67 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~  145 (194)
T 3reg_A           67 KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSD  145 (194)
T ss_dssp             TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTT
T ss_pred             CCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCC
Confidence            33567789999999999999999999999999999999999999997 67888887654 68999999999999753  6


Q ss_pred             cCCHHHHHHHHhhcCcE-EEEecCCCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        303 QVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       303 ~v~~~~~~~~~~~~~~~-~~~~SA~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      .+..+++..+++..+++ ++++||++|.||+++|++|.+.+.+.+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  192 (194)
T 3reg_A          146 DVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPV  192 (194)
T ss_dssp             CCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC-
T ss_pred             cccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCCC
Confidence            78888888899888887 99999999999999999999999876543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.18  E-value=0.00083  Score=53.31  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=33.0

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      +...+.+.+||++|.+.+..++..++..++++++|||++++.+++.+..|+..+
T Consensus        45 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~   98 (166)
T 3q72_A           45 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL   98 (166)
T ss_dssp             TTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            345678899999999999999999999999999999999999988887777655

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.18  E-value=0.00049  Score=57.37  Aligned_cols=74  Identities=36%  Similarity=0.639  Sum_probs=63.6

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ...+.+.+||++|++.+..++..++..++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus        54 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           54 GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDD  128 (212)
T ss_dssp             SCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTC
T ss_pred             CEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhC
Confidence            34678899999999999999999999999999999999999999986 7998887765 58999999999998543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.18  E-value=0.00091  Score=55.12  Aligned_cols=72  Identities=35%  Similarity=0.688  Sum_probs=64.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ..+.+.+||++|.+.+..++..++.+++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+..
T Consensus        66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~  138 (201)
T 2q3h_A           66 RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRE  138 (201)
T ss_dssp             EEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGG
T ss_pred             EEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhh
Confidence            4577889999999999999999999999999999999999999986 7988887765 5899999999999854

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.18  E-value=0.00051  Score=55.67  Aligned_cols=48  Identities=50%  Similarity=0.980  Sum_probs=33.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  275 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~  275 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||++++.+++.+..|
T Consensus        55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~  102 (183)
T 2fu5_C           55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW  102 (183)
T ss_dssp             EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred             EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHH
Confidence            457889999999999999999999999999999999998877765444

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.17  E-value=0.00095  Score=55.51  Aligned_cols=73  Identities=26%  Similarity=0.592  Sum_probs=65.2

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ...+.+.+||++|++.+..++..++..++++++|||+++..+++.+ ..|+..+.... .+.|+++|+||+|+.+
T Consensus        73 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           73 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT  146 (205)
T ss_dssp             SSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGG
T ss_pred             CEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhcc
Confidence            3567899999999999999999999999999999999999999988 68988887765 5899999999999853

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.17  E-value=0.0006  Score=67.28  Aligned_cols=90  Identities=16%  Similarity=0.043  Sum_probs=64.8

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEE  308 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~  308 (355)
                      .+.+.+|||+|+..|...+..++..+|++++++|+++....+.. .+...+..   .++|+++++||+|+. .  .....
T Consensus        73 ~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NKiD~~-~--~~~~~  145 (665)
T 2dy1_A           73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTKLDKG-G--DYYAL  145 (665)
T ss_dssp             TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEECGGGC-C--CHHHH
T ss_pred             CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecCCchh-h--hHHHH
Confidence            57789999999999988888899999999999999887664443 34444443   589999999999986 2  22333


Q ss_pred             HHHHHhhcC---cEEEEecC
Q psy15725        309 GERKAKELN---VMFIETSA  325 (355)
Q Consensus       309 ~~~~~~~~~---~~~~~~SA  325 (355)
                      ...+...++   ..++++|+
T Consensus       146 ~~~l~~~l~~~~~~~~Pi~~  165 (665)
T 2dy1_A          146 LEDLRSTLGPILPIDLPLYE  165 (665)
T ss_dssp             HHHHHHHHCSEEECEEEEEE
T ss_pred             HHHHHHHhCCcceEEeeecC
Confidence            344444333   23567776

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.16  E-value=0.00062  Score=55.16  Aligned_cols=54  Identities=28%  Similarity=0.509  Sum_probs=46.2

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      +...+.+.+||++|++.+..++..++..++++++|||++++.+++.+..|+..+
T Consensus        62 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  115 (183)
T 3kkq_A           62 DNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI  115 (183)
T ss_dssp             TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             CCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            344667889999999999999999999999999999999998888877666544

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.16  E-value=0.00059  Score=55.47  Aligned_cols=116  Identities=16%  Similarity=0.262  Sum_probs=95.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      +...+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+...  .
T Consensus        60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~  137 (186)
T 1ksh_A           60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--C  137 (186)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--H
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--H
Confidence            45788999999999999999999999999999999999999999988888876542 26899999999999965422  2


Q ss_pred             HHHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        307 EEGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .+.....     ...+++++++||++|.||+++|++|.+.+.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          138 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            2222221     23467999999999999999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.16  E-value=0.00057  Score=55.73  Aligned_cols=120  Identities=19%  Similarity=0.237  Sum_probs=92.2

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      +.+.+.+||++|.+.+..++..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.  ...
T Consensus        58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~  135 (187)
T 1zj6_A           58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTV  135 (187)
T ss_dssp             TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCH
Confidence            34788999999999999999999999999999999999999999999998887643 268999999999999642  223


Q ss_pred             HHHHHHH-----hhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCC
Q psy15725        307 EEGERKA-----KELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE  349 (355)
Q Consensus       307 ~~~~~~~-----~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~  349 (355)
                      .+.....     +..+++++++||++|.||+++|++|.+.+.......
T Consensus       136 ~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  183 (187)
T 1zj6_A          136 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLEHH  183 (187)
T ss_dssp             HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence            3333222     235679999999999999999999999997765443

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.15  E-value=0.0012  Score=63.43  Aligned_cols=70  Identities=19%  Similarity=0.117  Sum_probs=58.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      +...+.|+||||+..|..-....+.-+|++++|+|...+..-+...-|.... .   .++|++++.||.|....
T Consensus        98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~---~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A           98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-M---RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCCEEEEEECTTSCCC
T ss_pred             CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-H---hCCceEEEEecccchhc
Confidence            4678999999999999998888899999999999999998877765664443 3   58999999999998543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.15  E-value=0.00084  Score=54.74  Aligned_cols=116  Identities=19%  Similarity=0.305  Sum_probs=94.4

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      +...+.+||++|++.+...+..++..+|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+...  .
T Consensus        64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~  141 (189)
T 2x77_A           64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--E  141 (189)
T ss_dssp             TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--H
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--H
Confidence            35788999999999999999999999999999999999999999888888776543 25899999999999965422  1


Q ss_pred             HHHHH-----HHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        307 EEGER-----KAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~~~~-----~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .+...     .+...++++++|||++|.||+++|++|.+.+.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          142 AEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            22211     2233457899999999999999999999988654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.14  E-value=0.00058  Score=55.97  Aligned_cols=73  Identities=32%  Similarity=0.594  Sum_probs=65.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus        64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTC
T ss_pred             EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence            4578899999999999999999999999999999999999999987 7888887754 58999999999998643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.13  E-value=0.001  Score=53.81  Aligned_cols=73  Identities=38%  Similarity=0.671  Sum_probs=64.6

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+
T Consensus        50 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~  123 (186)
T 1mh1_A           50 GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD  123 (186)
T ss_dssp             TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHT
T ss_pred             CEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccc
Confidence            34677889999999999999999999999999999999999999987 6888887755 4899999999999854

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.13  E-value=0.00095  Score=55.14  Aligned_cols=54  Identities=30%  Similarity=0.420  Sum_probs=46.9

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  280 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~  280 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+.
T Consensus        69 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~  122 (201)
T 3oes_A           69 KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH  122 (201)
T ss_dssp             --CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999888877776653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.12  E-value=0.00013  Score=70.24  Aligned_cols=70  Identities=20%  Similarity=0.320  Sum_probs=51.5

Q ss_pred             EEEEEeCCCccc-----------ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725        231 RLQLWDTAGQER-----------FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  299 (355)
Q Consensus       231 ~~~i~D~~g~~~-----------~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  299 (355)
                      .+.++||+|...           +...+..++..+|++++|+|+++.........++..+..   .+.|+++|+||+|+.
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV  231 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence            467999999654           334555678899999999999875444445556655543   468999999999987


Q ss_pred             Cccc
Q psy15725        300 DKRQ  303 (355)
Q Consensus       300 ~~~~  303 (355)
                      +.+.
T Consensus       232 ~~~e  235 (550)
T 2qpt_A          232 ETQQ  235 (550)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            5443

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.10  E-value=0.0016  Score=58.15  Aligned_cols=73  Identities=38%  Similarity=0.664  Sum_probs=64.2

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      ...+.+.+||++|.+.+...+..++..++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+
T Consensus       200 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~  273 (332)
T 2wkq_A          200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRD  273 (332)
T ss_dssp             TEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHT
T ss_pred             CEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhccc
Confidence            34677889999999999999999999999999999999999999886 6888887755 4899999999999853

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=97.08  E-value=0.00011  Score=61.75  Aligned_cols=50  Identities=48%  Similarity=0.592  Sum_probs=43.4

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      ++|+++|+||+|+.+.+.+..++...++...+++++++||.++.++++++
T Consensus       145 ~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf  194 (211)
T 2g3y_A          145 DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  194 (211)
T ss_dssp             TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             CCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            79999999999998777777777778888888999999999999988654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.08  E-value=0.0085  Score=54.27  Aligned_cols=58  Identities=12%  Similarity=0.043  Sum_probs=39.3

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC----------------------CCCHHHHHHHHHHHc
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA----------------------GYNVKQLFRRVAAAL  342 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~----------------------~~gv~~l~~~l~~~i  342 (355)
                      ..+|+++++||.|..-..........+++...+.+++++||+.                      ..|++++.....+.+
T Consensus       198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L  277 (363)
T 1jal_A          198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL  277 (363)
T ss_dssp             TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT
T ss_pred             cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh
Confidence            3599999999999632111123344556666788999999763                      367888877776654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.08  E-value=0.0014  Score=52.63  Aligned_cols=56  Identities=36%  Similarity=0.689  Sum_probs=50.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER  283 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~  283 (355)
                      ..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..+....
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  109 (177)
T 1wms_A           54 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA  109 (177)
T ss_dssp             EEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHc
Confidence            45788999999999999999999999999999999999999999989998887654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.08  E-value=0.00082  Score=54.93  Aligned_cols=54  Identities=41%  Similarity=0.903  Sum_probs=48.4

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  280 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~  280 (355)
                      ...+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|+..+.
T Consensus        61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~  114 (195)
T 1x3s_A           61 GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE  114 (195)
T ss_dssp             TEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHT
T ss_pred             CeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999988888887764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.07  E-value=0.00069  Score=56.09  Aligned_cols=51  Identities=53%  Similarity=0.988  Sum_probs=44.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||+++..+++.+..|+..
T Consensus        76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~  126 (201)
T 2hup_A           76 KRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED  126 (201)
T ss_dssp             EEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHH
T ss_pred             EEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHH
Confidence            357889999999999999999999999999999999998888777666544

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=97.07  E-value=0.0011  Score=55.70  Aligned_cols=119  Identities=28%  Similarity=0.536  Sum_probs=102.6

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS  305 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~  305 (355)
                      +...+.+.+||++|++.+..++..++..++++++|||+++..+++.+..|+..+.... .++|+++|+||+|+.+... .
T Consensus        60 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~  137 (221)
T 3gj0_A           60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K  137 (221)
T ss_dssp             TTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C
T ss_pred             CCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c
Confidence            3456788999999999999999999999999999999999999999999999988765 5899999999999964432 2


Q ss_pred             HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      . +...+++..+++++++||++|.||+++|++|.+.+.....
T Consensus       138 ~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          138 A-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             G-GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred             H-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence            2 4445666778999999999999999999999999877654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.06  E-value=0.0012  Score=53.86  Aligned_cols=55  Identities=24%  Similarity=0.393  Sum_probs=45.4

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE  282 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~  282 (355)
                      ...+.+.+||++|++.+..+ ..++..++++++|||+++..+++.+..|+..+...
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~  120 (187)
T 3c5c_A           66 HQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALH  120 (187)
T ss_dssp             TEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            45678899999999988875 56889999999999999999999999999888774

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.05  E-value=0.00073  Score=53.65  Aligned_cols=116  Identities=39%  Similarity=0.598  Sum_probs=105.2

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+
T Consensus        52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~  130 (168)
T 1z2a_A           52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNE  130 (168)
T ss_dssp             EEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHH
T ss_pred             EEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHH
Confidence            45788999999999999999999999999999999999999999999999887765 68999999999999877778888


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +...+++..+++++++||++|.||+++|++|.+.+.+
T Consensus       131 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          131 EAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            8888888889999999999999999999999988754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.05  E-value=0.00061  Score=55.34  Aligned_cols=116  Identities=22%  Similarity=0.326  Sum_probs=92.2

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      .+.+.+||++|++.++..+..++..++++++|+|+++..+++.+..|+..+.... ..++|+++|+||+|+.+...  ..
T Consensus        59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~  136 (181)
T 1fzq_A           59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--AS  136 (181)
T ss_dssp             TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HH
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HH
Confidence            5678999999999999999999999999999999999999999888888775532 26899999999999965432  22


Q ss_pred             HHHHH-----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        308 EGERK-----AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       308 ~~~~~-----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      +....     +...++++++|||++|.||+++|++|.+.+.+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  180 (181)
T 1fzq_A          137 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK  180 (181)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC----
T ss_pred             HHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhcc
Confidence            22221     1234578999999999999999999999987653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.05  E-value=0.0015  Score=54.18  Aligned_cols=120  Identities=40%  Similarity=0.688  Sum_probs=108.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+......++|+++|+||+|+.+.+.+..+
T Consensus        73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~  152 (201)
T 2ew1_A           73 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQ  152 (201)
T ss_dssp             EEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHH
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHH
Confidence            46788999999999999999999999999999999999999999999999988776578999999999999877788888


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      ++..+++..+++++++||++|.||+++|++|.+.+....+
T Consensus       153 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          153 RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            8888888888999999999999999999999999876543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.03  E-value=0.00057  Score=55.82  Aligned_cols=52  Identities=50%  Similarity=1.003  Sum_probs=45.4

Q ss_pred             ceEEEEEEeCCCccccc-ccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~-~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|.+.+. .++..++..++++++|+|+++..+++.+..|+..+
T Consensus        67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i  119 (189)
T 1z06_A           67 ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEEC  119 (189)
T ss_dssp             EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             EEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            45788999999999998 78889999999999999999998888877776655

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.01  E-value=0.0014  Score=63.98  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      .|+|+|++|||||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            39999999999999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.01  E-value=0.0006  Score=55.07  Aligned_cols=73  Identities=38%  Similarity=0.677  Sum_probs=61.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTC
T ss_pred             EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcC
Confidence            3566789999999999999999999999999999999999999987 6888887765 48999999999998543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.00  E-value=0.0011  Score=52.88  Aligned_cols=51  Identities=53%  Similarity=1.004  Sum_probs=37.7

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      ..+.+.+||++|++.+..++..++..++++++|+|+++..+++.+..|+..
T Consensus        53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~  103 (170)
T 1z08_A           53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE  103 (170)
T ss_dssp             CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999998887776666544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.99  E-value=0.00076  Score=53.49  Aligned_cols=53  Identities=26%  Similarity=0.512  Sum_probs=46.1

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+..+
T Consensus        48 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i  100 (167)
T 1c1y_A           48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI  100 (167)
T ss_dssp             SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999998888777666554

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.99  E-value=0.00083  Score=55.19  Aligned_cols=114  Identities=39%  Similarity=0.731  Sum_probs=102.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ....+.+||++|++.+...+..++..+|++++|+|++++.+++.+..|+..+....  +.|+++|+||+| ...+.+..+
T Consensus        91 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~  167 (208)
T 3clv_A           91 CNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDIL  167 (208)
T ss_dssp             CEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHH
T ss_pred             ceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHH
Confidence            34788999999999999999999999999999999999999999999999987764  499999999999 555677788


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +...+++..+++++++||++|.||+++|++|.+.+.+
T Consensus       168 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          168 EVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             HHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            8888888889999999999999999999999988754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.99  E-value=0.0015  Score=54.09  Aligned_cols=74  Identities=36%  Similarity=0.630  Sum_probs=65.4

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|||+++..+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus        75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  149 (204)
T 4gzl_A           75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDD  149 (204)
T ss_dssp             -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTC
T ss_pred             CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccc
Confidence            35677889999999999999999999999999999999999999986 7888887765 68999999999998644

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.98  E-value=0.0011  Score=54.97  Aligned_cols=51  Identities=49%  Similarity=0.961  Sum_probs=44.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||++++.+++.+..|+..
T Consensus        55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~  105 (206)
T 2bcg_Y           55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE  105 (206)
T ss_dssp             EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999998888776666543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.98  E-value=0.00097  Score=53.71  Aligned_cols=48  Identities=50%  Similarity=0.960  Sum_probs=33.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  275 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~  275 (355)
                      ..+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|
T Consensus        58 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  105 (180)
T 2g6b_A           58 VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW  105 (180)
T ss_dssp             EEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHH
Confidence            457889999999999999999999999999999999998777655443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.97  E-value=0.00073  Score=55.09  Aligned_cols=53  Identities=43%  Similarity=0.866  Sum_probs=48.5

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  281 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~  281 (355)
                      .+.+.+||++|.+.+...+..++..+|++++|+|++++.+++.+..|+..+..
T Consensus        69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  121 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM  121 (195)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999888888888765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.95  E-value=0.00097  Score=52.82  Aligned_cols=53  Identities=28%  Similarity=0.542  Sum_probs=43.0

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+..+
T Consensus        49 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i  101 (168)
T 1u8z_A           49 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI  101 (168)
T ss_dssp             TEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999998888776666554

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.95  E-value=0.00079  Score=54.96  Aligned_cols=117  Identities=21%  Similarity=0.337  Sum_probs=93.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||++|.+.+..++..++..++++++|+|+++..+++.+..|+..+.... ..++|+++|+||+|+.+..  ..
T Consensus        65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~  142 (188)
T 1zd9_A           65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DE  142 (188)
T ss_dssp             TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CH
Confidence            35778999999999999999999999999999999999999999988888876542 2689999999999996432  22


Q ss_pred             HHHHHH-----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        307 EEGERK-----AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       307 ~~~~~~-----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      .+....     ....+++++++||++|.||+++|++|.+.+.+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  187 (188)
T 1zd9_A          143 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR  187 (188)
T ss_dssp             HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC---
T ss_pred             HHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            222221     1224578999999999999999999999987654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.001  Score=55.94  Aligned_cols=52  Identities=38%  Similarity=0.919  Sum_probs=44.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||++++.+++.+..|+..+
T Consensus        60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i  111 (223)
T 3cpj_B           60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL  111 (223)
T ss_dssp             EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999998887776665443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.94  E-value=0.0013  Score=52.90  Aligned_cols=50  Identities=32%  Similarity=0.557  Sum_probs=43.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID  277 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~  277 (355)
                      ..+.+.+||++|++.+..++..++..++++++|+|+++..+++.+..|+.
T Consensus        55 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~  104 (181)
T 2fn4_A           55 IPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFT  104 (181)
T ss_dssp             EEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999888777665554

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.94  E-value=0.0013  Score=54.35  Aligned_cols=73  Identities=41%  Similarity=0.692  Sum_probs=64.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||+++..+++.+ ..|...+.... .++|+++|+||+|+.+.
T Consensus        71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  144 (201)
T 2gco_A           71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQD  144 (201)
T ss_dssp             EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTC
T ss_pred             EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcC
Confidence            457889999999999999999999999999999999999999988 57888877654 58999999999998643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.93  E-value=0.0023  Score=52.04  Aligned_cols=52  Identities=27%  Similarity=0.517  Sum_probs=34.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..+
T Consensus        67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i  118 (190)
T 3con_A           67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQI  118 (190)
T ss_dssp             EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            4577899999999999999999999999999999999998888776666554

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.93  E-value=0.0015  Score=51.89  Aligned_cols=118  Identities=44%  Similarity=0.794  Sum_probs=106.2

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc---cc
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK---RQ  303 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~---~~  303 (355)
                      ...+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|+..+......++|+++|+||+|+...   +.
T Consensus        49 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  128 (170)
T 1ek0_A           49 EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERK  128 (170)
T ss_dssp             TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCC
T ss_pred             CEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccC
Confidence            346788999999999999999999999999999999999999999999999988776578999999999999754   67


Q ss_pred             CCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        304 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +..++...+++..+++++++||++|.|++++|++|.+.+++
T Consensus       129 v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (170)
T 1ek0_A          129 VAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             SCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred             CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            77788888888888999999999999999999999998864

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.91  E-value=0.0011  Score=53.40  Aligned_cols=48  Identities=48%  Similarity=1.003  Sum_probs=41.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  275 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~  275 (355)
                      ..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|
T Consensus        59 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~  106 (181)
T 2efe_B           59 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKW  106 (181)
T ss_dssp             EEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence            467889999999999999999999999999999999988777665443

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.91  E-value=0.00091  Score=55.29  Aligned_cols=55  Identities=29%  Similarity=0.599  Sum_probs=51.1

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER  283 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~  283 (355)
                      .+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+..+....
T Consensus        72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  126 (208)
T 2yc2_C           72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR  126 (208)
T ss_dssp             EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence            6788999999999999999999999999999999999999999999999998864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.90  E-value=0.0014  Score=53.18  Aligned_cols=117  Identities=31%  Similarity=0.504  Sum_probs=101.1

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVS  305 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~  305 (355)
                      ...+.+.+||++|++.+..++..++..++++++|+|+++..+++.+..|...+..... .++|+++|+||+|+. .+.+.
T Consensus        49 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~  127 (189)
T 4dsu_A           49 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVD  127 (189)
T ss_dssp             TEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSC
T ss_pred             CcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccC
Confidence            3456788999999999999999999999999999999999999999999988877543 689999999999986 45566


Q ss_pred             HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        306 TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      .+....+++..+++++++||++|.||+++|++|.+.+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          128 TKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             HHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            778888888889999999999999999999999998864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.89  E-value=0.0014  Score=53.43  Aligned_cols=51  Identities=41%  Similarity=0.868  Sum_probs=44.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      ..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..
T Consensus        69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~  119 (189)
T 2gf9_A           69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQ  119 (189)
T ss_dssp             EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHH
T ss_pred             eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999998887766555443

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.89  E-value=0.0017  Score=51.56  Aligned_cols=117  Identities=42%  Similarity=0.791  Sum_probs=106.7

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+
T Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~  132 (170)
T 1r2q_A           53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQ  132 (170)
T ss_dssp             EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHH
Confidence            46788999999999999999999999999999999999999999999999988776578999999999999777778788


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +...+++..+++++++||++|.|++++|++|.+.+++
T Consensus       133 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~~  169 (170)
T 1r2q_A          133 EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            8888888889999999999999999999999998864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.88  E-value=0.001  Score=54.42  Aligned_cols=51  Identities=51%  Similarity=0.980  Sum_probs=44.2

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      ..+.+.+||++|++.+..++..++..++++++|+|+++..+++.+..|+..
T Consensus        68 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~  118 (191)
T 2a5j_A           68 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED  118 (191)
T ss_dssp             EEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHH
T ss_pred             EEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999998888776666543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.88  E-value=0.0014  Score=54.83  Aligned_cols=73  Identities=38%  Similarity=0.707  Sum_probs=50.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+...
T Consensus        80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  153 (214)
T 2j1l_A           80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKD  153 (214)
T ss_dssp             EEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred             EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence            4668899999999999999999999999999999999999999986 6888887654 68999999999998644

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.87  E-value=0.0026  Score=52.47  Aligned_cols=117  Identities=36%  Similarity=0.597  Sum_probs=101.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC----CCceEEEEeeCCCCCCccc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~~~  303 (355)
                      ..+.+.+||++|++.+..++..++..+|++++|+|++++.+++.+..|+..+.....    .++|+++|+||+|+. .+.
T Consensus        55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~  133 (207)
T 1vg8_A           55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQ  133 (207)
T ss_dssp             CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCC
T ss_pred             EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccc
Confidence            457889999999999999999999999999999999999999999999988866543    478999999999997 455


Q ss_pred             CCHHHHHHHHh-hcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        304 VSTEEGERKAK-ELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       304 v~~~~~~~~~~-~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +...+...+++ ..+++++++||++|.||+++|++|.+.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          134 VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ  176 (207)
T ss_dssp             SCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            66677777776 5678999999999999999999999988643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.86  E-value=0.0013  Score=53.22  Aligned_cols=52  Identities=29%  Similarity=0.573  Sum_probs=45.2

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+
T Consensus        64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i  115 (187)
T 2a9k_A           64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI  115 (187)
T ss_dssp             EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999998887776666554

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.86  E-value=0.0049  Score=56.09  Aligned_cols=45  Identities=22%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             CceEEEEeeCCCC--CCc-ccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        286 DVIIMLVGNKTDL--SDK-RQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       286 ~~piilv~nK~Dl--~~~-~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                      .+|+++++||.|.  .+. ..........+++..+.+++++||+...+
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~e  248 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAE  248 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHH
Confidence            4899999999983  221 01223444566666788999999987433

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.86  E-value=0.0003  Score=57.63  Aligned_cols=49  Identities=41%  Similarity=0.631  Sum_probs=43.5

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                      ++|+++|+||+|+.+.+.+...+...++...+.+++++|+.++.+++++
T Consensus       128 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A          128 NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA  176 (191)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            5899999999999887888888888899999999999999999887754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.85  E-value=0.0015  Score=51.92  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=39.4

Q ss_pred             cceEEEEEEeCCCcccccc-cccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~-~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+.+.+||++|.+.+.. ++..++..++++++|||++++.+++.+..|+..+
T Consensus        48 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~  101 (169)
T 3q85_A           48 KEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL  101 (169)
T ss_dssp             TEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             CeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHH
Confidence            3467888999999998876 6778889999999999999999988887776654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.85  E-value=0.0025  Score=52.89  Aligned_cols=73  Identities=38%  Similarity=0.676  Sum_probs=64.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ..+.+.+||++|++.+..++..++..++++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.
T Consensus        71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A           71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSD  144 (207)
T ss_dssp             EEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred             EEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence            457889999999999999999999999999999999999999888 57888877654 58999999999998643

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.84  E-value=0.0019  Score=52.31  Aligned_cols=120  Identities=43%  Similarity=0.688  Sum_probs=108.4

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|.+.+...+..++..++++++|+|++++.+++.+..|+..+......++|+++|+||+|+...+.+...
T Consensus        57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  136 (186)
T 2bme_A           57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL  136 (186)
T ss_dssp             EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHH
Confidence            45788999999999999999999999999999999999999999999998887766578999999999999777778888


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      ++..+++..+++++++||++|.||+++|++|.+.+.+...
T Consensus       137 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (186)
T 2bme_A          137 EASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE  176 (186)
T ss_dssp             HHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence            8888888899999999999999999999999998876543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.84  E-value=0.00041  Score=60.02  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.2

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .....++++|.+|||||||++++..
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~   36 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGR   36 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHH
Confidence            4567899999999999999999984

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.82  E-value=0.0025  Score=52.12  Aligned_cols=52  Identities=50%  Similarity=0.899  Sum_probs=45.0

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      ...+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..
T Consensus        69 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~  120 (192)
T 2fg5_A           69 NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE  120 (192)
T ss_dssp             SSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHH
T ss_pred             CEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999888776666543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.80  E-value=0.0015  Score=53.97  Aligned_cols=53  Identities=28%  Similarity=0.542  Sum_probs=46.0

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|||+++..+++.+..|+..+
T Consensus        59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i  111 (206)
T 2bov_A           59 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI  111 (206)
T ss_dssp             TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999998888877776554

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.80  E-value=0.0013  Score=52.89  Aligned_cols=118  Identities=36%  Similarity=0.547  Sum_probs=93.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC----CCceEEEEeeCCCCCC-cc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSD-KR  302 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~-~~  302 (355)
                      ..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|+..+.....    .++|+++|+||+|+.. .+
T Consensus        56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  135 (182)
T 1ky3_A           56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK  135 (182)
T ss_dssp             CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC
T ss_pred             cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccc
Confidence            356789999999999999999999999999999999999999999999988876543    6899999999999954 34


Q ss_pred             cCCHHHHHHHHh-hcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        303 QVSTEEGERKAK-ELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       303 ~v~~~~~~~~~~-~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .+..++...+++ ..+++++++||++|.||+++|++|.+.+.+.
T Consensus       136 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          136 IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             CSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            567777777877 4568999999999999999999999988654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.80  E-value=0.0013  Score=54.14  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=44.9

Q ss_pred             cceEEEEEEeCCCcccccc-cccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~-~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+.+.+||++|.+.+.. ++..++..++++++|||+++..+++.+..|+..+
T Consensus        69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i  122 (195)
T 3cbq_A           69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL  122 (195)
T ss_dssp             TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            3467888999999987765 7778889999999999999999998888887654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.79  E-value=0.0025  Score=52.01  Aligned_cols=119  Identities=34%  Similarity=0.625  Sum_probs=107.6

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|+|++++.++..+..|+..+......++|+++|+||+|+.+.+.+..
T Consensus        71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~  150 (193)
T 2oil_A           71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPT  150 (193)
T ss_dssp             TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCH
T ss_pred             CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCH
Confidence            45678899999999999999999999999999999999999999999999998776557899999999999987777888


Q ss_pred             HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .++..+++..+++++++||++|.||+++|++|.+.+.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (193)
T 2oil_A          151 EEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAK  189 (193)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            888888888899999999999999999999999988654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.78  E-value=0.0019  Score=52.74  Aligned_cols=52  Identities=46%  Similarity=0.985  Sum_probs=45.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|++.+..++..++..+|++++|+|+++..+++.+..|+..+
T Consensus        63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i  114 (196)
T 3tkl_A           63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI  114 (196)
T ss_dssp             EEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             EEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999988887776665543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.78  E-value=0.00066  Score=55.26  Aligned_cols=22  Identities=36%  Similarity=0.724  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++++++|++|+|||||++.+.+
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999887

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.75  E-value=0.0023  Score=52.69  Aligned_cols=49  Identities=43%  Similarity=0.891  Sum_probs=42.0

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  275 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~  275 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|
T Consensus        54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  102 (203)
T 1zbd_A           54 DKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW  102 (203)
T ss_dssp             TEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHH
T ss_pred             CeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHH
Confidence            3467889999999999999999999999999999999998777655443

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=96.75  E-value=0.001  Score=59.44  Aligned_cols=56  Identities=14%  Similarity=0.129  Sum_probs=48.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCC-------CcccHHHHHHHHHHHHhhc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT-------NANSFHQTSKWIDDVRTER  283 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~-------~~~s~~~~~~~~~~i~~~~  283 (355)
                      +.+.+.+||++|++.++.+|..++.+++++|+|+|++       +..+...+.++...+.+..
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~  227 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII  227 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999998       6667777777777777643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.75  E-value=0.0011  Score=52.62  Aligned_cols=117  Identities=41%  Similarity=0.742  Sum_probs=105.2

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|++.+...+..++..++++++|+|++++.+++.+..|+..+......++|+++|+||+|+ ..+.+..+
T Consensus        50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~  128 (170)
T 1g16_A           50 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTAD  128 (170)
T ss_dssp             CEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHH
T ss_pred             EEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHH
Confidence            45778999999999999999999999999999999999999999999999988776578999999999999 45567777


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +...+++..+++++++||++|.||+++|++|.+.+.++
T Consensus       129 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          129 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            88888888889999999999999999999999998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.75  E-value=0.0024  Score=51.17  Aligned_cols=50  Identities=94%  Similarity=1.414  Sum_probs=43.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID  277 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~  277 (355)
                      ..+.+.+||++|.+.+...+..++..++++++|+|++++.+++.+..|+.
T Consensus        61 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~  110 (179)
T 2y8e_A           61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWID  110 (179)
T ss_dssp             EEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred             eEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999888776655543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.73  E-value=0.003  Score=50.07  Aligned_cols=49  Identities=45%  Similarity=0.885  Sum_probs=41.7

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  275 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~  275 (355)
                      .....+.+||++|.+.+...+..++..++++++|+|++++.+++.+..|
T Consensus        52 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~  100 (170)
T 1z0j_A           52 NELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW  100 (170)
T ss_dssp             TEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred             CeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHH
Confidence            3457789999999999999999999999999999999998777655433

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.72  E-value=0.0019  Score=50.97  Aligned_cols=52  Identities=31%  Similarity=0.532  Sum_probs=45.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|++.+..++..++..++++++|+|++++.+++.+..|...+
T Consensus        49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i  100 (167)
T 1kao_A           49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQI  100 (167)
T ss_dssp             EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999998887776666554

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.71  E-value=0.0025  Score=51.82  Aligned_cols=116  Identities=22%  Similarity=0.384  Sum_probs=101.3

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCC--Cccc
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLS--DKRQ  303 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~--~~~~  303 (355)
                      ...+.+.+||++|++.+.     ++..++++++|||+++..+++.+..|+..+..... .++|+++|+||+|+.  ..+.
T Consensus        64 ~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~  138 (184)
T 3ihw_A           64 GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRV  138 (184)
T ss_dssp             TEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCC
T ss_pred             CEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccc
Confidence            346788999999998876     77889999999999999999999999999977653 579999999999994  5677


Q ss_pred             CCHHHHHHHHhhcC-cEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        304 VSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       304 v~~~~~~~~~~~~~-~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      +..+++..+++..+ +++++|||++|.||+++|++|.+.+...++
T Consensus       139 v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          139 IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             SCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             cCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence            88888888998887 899999999999999999999998876554

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.70  E-value=0.0022  Score=50.57  Aligned_cols=52  Identities=27%  Similarity=0.538  Sum_probs=44.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..+
T Consensus        49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i  100 (166)
T 2ce2_X           49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI  100 (166)
T ss_dssp             EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            4577889999999999999999999999999999999988877776665544

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.70  E-value=0.0017  Score=53.96  Aligned_cols=117  Identities=41%  Similarity=0.743  Sum_probs=104.4

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|.+.+...+..++..++++++|||++++.+++.+..|+..+......++|+++|+||+|+ ..+.+..+
T Consensus        67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~  145 (213)
T 3cph_A           67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTAD  145 (213)
T ss_dssp             EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHH
Confidence            35788999999999999999999999999999999999999999999999987766568999999999999 45667777


Q ss_pred             HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        308 EGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       308 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +...+++..+++++++||++|.||+++|++|.+.+...
T Consensus       146 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  183 (213)
T 3cph_A          146 QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            77888888889999999999999999999999988653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.70  E-value=0.0029  Score=52.20  Aligned_cols=50  Identities=50%  Similarity=0.939  Sum_probs=43.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID  277 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~  277 (355)
                      ..+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+.
T Consensus        72 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~  121 (200)
T 2o52_A           72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLT  121 (200)
T ss_dssp             EEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred             eeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999888877665554

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.70  E-value=0.0015  Score=51.98  Aligned_cols=54  Identities=22%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  281 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~  281 (355)
                      ..+.+.+||++|.+.+..++..++..++++++|+|++++.+++.+..|+..+..
T Consensus        49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~  102 (172)
T 2erx_A           49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE  102 (172)
T ss_dssp             EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred             EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999888888788777755

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.68  E-value=0.00082  Score=62.64  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ...|+++|.+||||||++..|..
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999998874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.67  E-value=0.0013  Score=52.74  Aligned_cols=48  Identities=48%  Similarity=0.960  Sum_probs=41.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  275 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~  275 (355)
                      ..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|
T Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~  109 (179)
T 1z0f_A           62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW  109 (179)
T ss_dssp             EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHH
T ss_pred             eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHH
Confidence            467889999999999999999999999999999999998777665444

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.66  E-value=0.002  Score=52.56  Aligned_cols=115  Identities=17%  Similarity=0.277  Sum_probs=94.4

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC---CCceEEEEeeCCCCCCcccCC
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG---SDVIIMLVGNKTDLSDKRQVS  305 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piilv~nK~Dl~~~~~v~  305 (355)
                      .+.+.+||++|++.+...+..++..+|++++|+|+++..+++.+..|+..+.....   .++|+++|+||+|+.+.  ..
T Consensus        66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~  143 (190)
T 2h57_A           66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VT  143 (190)
T ss_dssp             SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CC
Confidence            46789999999999999999999999999999999999999999889888766533   48999999999999643  33


Q ss_pred             HHHHHHHHh-----hcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        306 TEEGERKAK-----ELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       306 ~~~~~~~~~-----~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      ..+......     ..+++++++||++|.||+++|++|.+.+.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          144 SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred             HHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence            344444332     2467999999999999999999999998654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.66  E-value=0.0021  Score=63.97  Aligned_cols=68  Identities=24%  Similarity=0.247  Sum_probs=58.0

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  299 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  299 (355)
                      +.+.+.++||||+..|.......+.-+|++++|+|+......+...-|.....    .++|.+++.||.|..
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence            46889999999999999888888999999999999998888776555555554    389999999999974

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.66  E-value=0.00062  Score=54.89  Aligned_cols=51  Identities=25%  Similarity=0.412  Sum_probs=41.5

Q ss_pred             CCccEEEEEeecCCCC--cccceehhhhhhhhhcc-CeEEEEeeeeeccccceE
Q psy15725        180 GSDVIIMLVGNKTDLS--DKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       180 ~~~~piilv~nK~D~~--~~~~v~~~~~~~~~~~~-~~~~~~~sa~~~~~v~~i  230 (355)
                      ..++|+++|+||+|+.  ..+.+..++..+++... +.+++++|+.++.+++.+
T Consensus       106 ~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  159 (178)
T 2iwr_A          106 RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV  159 (178)
T ss_dssp             SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHH
T ss_pred             CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHH
Confidence            4689999999999994  45667777778887765 689999999999887754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.61  E-value=0.00067  Score=56.74  Aligned_cols=51  Identities=45%  Similarity=0.893  Sum_probs=45.0

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      .+.+.+||++|++.+...+..++..++++++|||+++..+++.+..|+..+
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i  133 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL  133 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTC
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            577899999999999999999999999999999999998888777776544

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.0018  Score=53.01  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=47.7

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  281 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~  281 (355)
                      ...+.+.+||++|.+.+..++..++..++++++|||++++.+++.+..|+..+..
T Consensus        53 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~  107 (199)
T 2gf0_A           53 KSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQ  107 (199)
T ss_dssp             TEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred             CEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence            3466789999999999999999999999999999999999888887777776654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.60  E-value=0.0019  Score=52.89  Aligned_cols=117  Identities=37%  Similarity=0.708  Sum_probs=105.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ..+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..+......++|+++|+||+|+.+.+.+..+
T Consensus        73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~  152 (192)
T 2il1_A           73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQ  152 (192)
T ss_dssp             EEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHH
Confidence            45788999999999999999999999999999999999999999999998887776578999999999999877778888


Q ss_pred             HHHHHHhhc-CcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        308 EGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       308 ~~~~~~~~~-~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +...+++.. +++++++||++|.||+++|++|.+.+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          153 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            888888774 7899999999999999999999988753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.58  E-value=0.0011  Score=54.54  Aligned_cols=117  Identities=39%  Similarity=0.627  Sum_probs=102.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC------Cc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS------DK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~~  301 (355)
                      ..+.+.+||++|.+.+...+..++..+|++++|||+++..+++.+..|+..+......++|+++|+||+|+.      ..
T Consensus        75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~  154 (199)
T 2p5s_A           75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQ  154 (199)
T ss_dssp             EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTC
T ss_pred             EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccc
Confidence            457789999999999999999999999999999999999999999999998877655689999999999985      34


Q ss_pred             ccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        302 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       302 ~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +.+..+++..+++..+++++++||++|.||+++|++|.+.+.+
T Consensus       155 ~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          155 KCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            6677888888888889999999999999999999999998864

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.53  E-value=0.0013  Score=53.51  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      --++++|++|||||||++.+.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999873

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.52  E-value=0.0018  Score=53.22  Aligned_cols=114  Identities=19%  Similarity=0.259  Sum_probs=91.9

Q ss_pred             ceEEEEEEeCCCcccccccc---cccccCCcEEEEEEeCCCc--ccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC--
Q psy15725        228 KQVRLQLWDTAGQERFRSLI---PSYIRDSTVAVVVYDITNA--NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD--  300 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~---~~~~~~~~~vi~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~--  300 (355)
                      ..+.+.+||++|++.|....   ..++.+++++++|||+++.  .+++.+..|+..+.... .++|+++|+||+|+.+  
T Consensus        67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~  145 (196)
T 3llu_A           67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDD  145 (196)
T ss_dssp             TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHH
T ss_pred             CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchh
Confidence            34678999999999987765   7999999999999999987  45555666776664333 6899999999999864  


Q ss_pred             -----cccCCHHHHHHHHh----hcCcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        301 -----KRQVSTEEGERKAK----ELNVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       301 -----~~~v~~~~~~~~~~----~~~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                           .+.+.......+++    ..++++++|||++ .||+++|+.|++.+.
T Consensus       146 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~li  196 (196)
T 3llu_A          146 HKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKLI  196 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred             hhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHhC
Confidence                 23455555666676    6678999999999 999999999998763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.51  E-value=0.0014  Score=54.10  Aligned_cols=26  Identities=19%  Similarity=0.446  Sum_probs=22.1

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .+.--|+++|++|||||||+++|...
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            34457899999999999999999873

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.48  E-value=0.0043  Score=49.45  Aligned_cols=52  Identities=23%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             ceEEEEEEeCCCccc--ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQER--FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~--~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||++|.+.  +..++..++..++++++|||++++.+++.+..|+..+
T Consensus        50 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l  103 (175)
T 2nzj_A           50 EDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL  103 (175)
T ss_dssp             EEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            456788999999887  5566778889999999999999999988877776654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.48  E-value=0.0013  Score=54.50  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|++|+|||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999887

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.46  E-value=0.0033  Score=51.54  Aligned_cols=52  Identities=31%  Similarity=0.340  Sum_probs=43.9

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+.+.+||++|.+. ...+..++..++++++|||++++.+++.+..|+..+
T Consensus        73 ~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i  124 (196)
T 2atv_A           73 DEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL  124 (196)
T ss_dssp             TEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             CEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence            3467889999999888 677888899999999999999998888877776554

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.43  E-value=0.0029  Score=52.78  Aligned_cols=50  Identities=26%  Similarity=0.624  Sum_probs=44.0

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      .+.+.+||++|.+.+..++..++..+|++++|+|+++..+++.+..|+..
T Consensus        60 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~  109 (218)
T 4djt_A           60 VIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKE  109 (218)
T ss_dssp             EEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHH
T ss_pred             EEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHH
Confidence            37789999999999999999999999999999999999888777666544

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.31  E-value=0.0037  Score=50.67  Aligned_cols=145  Identities=23%  Similarity=0.311  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++|.+..+...+.                       |++....  ..+...    .+.+||||
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------------~~~t~~~--~~~~~~----~~~l~Dt~   52 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKR-----------------------PGVTRKI--IEIEWK----NHKIIDMP   52 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSS-----------------------TTCTTSC--EEEEET----TEEEEECC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCC-----------------------CCcccee--EEEecC----CEEEEECC
Confidence            689999999999999999999865443322                       2222111  111122    58899999


Q ss_pred             C-----------cccccccccccccC-ccEEEEEEECCCcchhhhH-HHHHHH--------HhhhcCCceEEeecccccc
Q psy15725         94 G-----------QERFRSLIPSYIRD-STVAVVVYDITNANSFHQT-SKWIDD--------VRTERGSDVIIMLVGSIET  152 (355)
Q Consensus        94 g-----------~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~  152 (355)
                      |           ++.+...+..+++. ++++++||++.+..++..+ ..|...        +...               
T Consensus        53 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~---------------  117 (190)
T 2cxx_A           53 GFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF---------------  117 (190)
T ss_dssp             CBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHH---------------
T ss_pred             CccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHH---------------
Confidence            9           66777777778887 8888888888888888776 667653        1110               


Q ss_pred             ccccccccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCe-------EEEEeeeeecc
Q psy15725        153 NFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-------MFIETSAKAGY  225 (355)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~-------~~~~~sa~~~~  225 (355)
                                               ....++|+++|+||+|+...+   ..+..+++...+.       +++++|+.++.
T Consensus       118 -------------------------~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  169 (190)
T 2cxx_A          118 -------------------------LRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGD  169 (190)
T ss_dssp             -------------------------HHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCT
T ss_pred             -------------------------HHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCC
Confidence                                     112379999999999987644   3445566666654       47999999998


Q ss_pred             ccceE
Q psy15725        226 NVKQV  230 (355)
Q Consensus       226 ~v~~i  230 (355)
                      +++++
T Consensus       170 ~v~~l  174 (190)
T 2cxx_A          170 NIERL  174 (190)
T ss_dssp             THHHH
T ss_pred             CHHHH
Confidence            87754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.31  E-value=0.0022  Score=52.38  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.|+++|++|||||||++.+.+
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999999877

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.31  E-value=0.0042  Score=55.01  Aligned_cols=85  Identities=16%  Similarity=0.182  Sum_probs=54.1

Q ss_pred             ccccccccCccEEEEEEECCCcchh-hhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccccccc
Q psy15725        100 SLIPSYIRDSTVAVVVYDITNANSF-HQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTE  178 (355)
Q Consensus       100 ~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (355)
                      .+....+.++|.+++|+|+.++..- ..+..++.....                                          
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~------------------------------------------  115 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA------------------------------------------  115 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT------------------------------------------
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH------------------------------------------
Confidence            3444568899999999999976543 445555544332                                          


Q ss_pred             CCCccEEEEEeecCCCCcccce--ehhhhhhhhhccCeEEEEeeeeeccccc
Q psy15725        179 RGSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELNVMFIETSAKAGYNVK  228 (355)
Q Consensus       179 ~~~~~piilv~nK~D~~~~~~v--~~~~~~~~~~~~~~~~~~~sa~~~~~v~  228 (355)
                        .++|.++|.||+|+.++...  ............+.+++.+|+..+.+++
T Consensus       116 --~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~  165 (307)
T 1t9h_A          116 --NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLA  165 (307)
T ss_dssp             --TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCT
T ss_pred             --CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHH
Confidence              37899999999999764320  0111222223446678888887776544

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=96.28  E-value=0.0032  Score=56.49  Aligned_cols=116  Identities=19%  Similarity=0.336  Sum_probs=88.9

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+|||+|++.+..++..++..+|++++|||+++..++..+..|+..+.... ..++|+++|+||+|+.+...  .
T Consensus       207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~  284 (329)
T 3o47_A          207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--A  284 (329)
T ss_dssp             TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--H
T ss_pred             CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--H
Confidence            45678999999999999999999999999999999999999999888877765433 25899999999999964432  2


Q ss_pred             HHHH-HH----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        307 EEGE-RK----AKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~~~-~~----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .+.. .+    ++..+++++++||++|.||+++|++|.+.+.+.
T Consensus       285 ~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          285 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence            2222 22    223457899999999999999999999998754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=96.27  E-value=0.0027  Score=56.63  Aligned_cols=113  Identities=18%  Similarity=0.183  Sum_probs=89.6

Q ss_pred             EEEEEEeCCCcccccc---cccccccCCcEEEEEEeCCCcccHHHHH---HHHHHHHhhcCCCceEEEEeeCCCCCCc--
Q psy15725        230 VRLQLWDTAGQERFRS---LIPSYIRDSTVAVVVYDITNANSFHQTS---KWIDDVRTERGSDVIIMLVGNKTDLSDK--  301 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~---~~~~~~~~~~~vi~v~d~~~~~s~~~~~---~~~~~i~~~~~~~~piilv~nK~Dl~~~--  301 (355)
                      +.+.||||+|++.|+.   .++.++++++++|+|||+++. ..+...   +|+..+.... .++|+++++||+|+.++  
T Consensus        46 v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~  123 (331)
T 3r7w_B           46 IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDF  123 (331)
T ss_dssp             SCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHH
T ss_pred             EEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhh
Confidence            6789999999999975   368899999999999999987 333333   3344444333 68999999999999754  


Q ss_pred             -----ccCCHHHHHHHHhh----cCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        302 -----RQVSTEEGERKAKE----LNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       302 -----~~v~~~~~~~~~~~----~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                           +.+..+++.++++.    .++++++|||++ .||+++|..|++.+.+.
T Consensus       124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence                 35666777777775    678999999997 59999999999988754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.25  E-value=0.002  Score=54.23  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -++++|++|||||||++.+.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999884

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.24  E-value=0.0021  Score=53.19  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -|+++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999998874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.24  E-value=0.0006  Score=54.47  Aligned_cols=146  Identities=14%  Similarity=0.238  Sum_probs=102.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.++|+++|++|||||||+++|.+..+...+                       .|+.+.+.....+.+++  ..+.+||
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~-----------------------~~~~t~~~~~~~~~~~~--~~l~i~D   56 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGN-----------------------WPGVTVEKKEGEFEYNG--EKFKVVD   56 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC----------------------------CCCCCEEEEEETT--EEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccC-----------------------CCCcceeeeEEEEEECC--cEEEEEE
Confidence            4589999999999999999999985432211                       12222233333333333  5799999


Q ss_pred             cCCcccccc------ccccccc--CccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         92 TAGQERFRS------LIPSYIR--DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        92 ~~g~~~~~~------~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      |||+..+..      +...+++  .+|++++|+|+++.+   ....|+.++..                           
T Consensus        57 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~---------------------------  106 (165)
T 2wji_A           57 LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME---------------------------  106 (165)
T ss_dssp             CCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH---------------------------
T ss_pred             CCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh---------------------------
Confidence            999988753      3355554  899999999998843   34456666543                           


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                                       .++|+++|+||+|+...+.+.. +..+++...+.+++++|+.++.+++++
T Consensus       107 -----------------~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l  155 (165)
T 2wji_A          107 -----------------MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEEL  155 (165)
T ss_dssp             -----------------TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred             -----------------cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence                             2689999999999865544443 356677777889999999999888754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.23  E-value=0.0016  Score=52.85  Aligned_cols=119  Identities=19%  Similarity=0.393  Sum_probs=95.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC-
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA-NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS-  305 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~-  305 (355)
                      ..+.+.+||++|++.+..+++.++.+++++++|+|++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+.+. 
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~  132 (184)
T 2zej_A           54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKA  132 (184)
T ss_dssp             --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHH
T ss_pred             CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHH
Confidence            356788999999999999999999999999999999987 47888899999887654 589999999999987554332 


Q ss_pred             --HHHHHHHHhhcCcE----EEEecCCCCC-CHHHHHHHHHHHcCCCCC
Q psy15725        306 --TEEGERKAKELNVM----FIETSAKAGY-NVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       306 --~~~~~~~~~~~~~~----~~~~SA~~~~-gv~~l~~~l~~~i~~~~~  347 (355)
                        ......+++..+++    ++++||++|. |++++++.|.+.+++.+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          133 CMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             HHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence              23344556566765    9999999997 999999999999887544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.21  E-value=0.0021  Score=51.78  Aligned_cols=21  Identities=19%  Similarity=0.485  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|++|+|||||++.+..
T Consensus        11 i~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHcc
Confidence            489999999999999998654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.20  E-value=0.0023  Score=53.30  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|++|+|||||++.+.+
T Consensus        22 i~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999887

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.19  E-value=0.0024  Score=52.25  Aligned_cols=21  Identities=24%  Similarity=0.608  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChhHHHHHhhhc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~   36 (355)
                      |+++|++|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999873

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.18  E-value=0.0023  Score=53.75  Aligned_cols=22  Identities=36%  Similarity=0.659  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .++++|++|+|||||++.+.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998873

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.16  E-value=0.0028  Score=52.76  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +...|+|+|++|+|||||++.+.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998877

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=96.08  E-value=0.0015  Score=64.10  Aligned_cols=117  Identities=12%  Similarity=0.105  Sum_probs=86.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC---
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV---  304 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v---  304 (355)
                      +...+.++||||+..|.......+.-+|++++|+|.......+...-|.....    .++|.+++.||.|....+..   
T Consensus        65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~  140 (638)
T 3j25_A           65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVY  140 (638)
T ss_dssp             SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHH
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHH
Confidence            45667899999999999888888899999999999998877666544544443    37999999999997432100   


Q ss_pred             -----------------------------CHHH------------------------------HHHHHhhcCcEEEEecC
Q psy15725        305 -----------------------------STEE------------------------------GERKAKELNVMFIETSA  325 (355)
Q Consensus       305 -----------------------------~~~~------------------------------~~~~~~~~~~~~~~~SA  325 (355)
                                                   ..+.                              ...+......|+++.||
T Consensus       141 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa  220 (638)
T 3j25_A          141 QDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSA  220 (638)
T ss_dssp             HHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCS
T ss_pred             HHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccccc
Confidence                                         0000                              00011122358999999


Q ss_pred             CCCCCHHHHHHHHHHHcCCCCCC
Q psy15725        326 KAGYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       326 ~~~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      ++|.||+++++.|.+.+|.+...
T Consensus       221 ~~~~Gv~~LLd~i~~~~p~p~~~  243 (638)
T 3j25_A          221 KSNIGIDNLIEVITNKFYSSTHR  243 (638)
T ss_dssp             TTCCSHHHHHHHHHHSCCCSGGG
T ss_pred             ccCCCchhHhhhhhccccCcccc
Confidence            99999999999999999987543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.08  E-value=0.0028  Score=52.83  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -|+++|++|||||||++.|...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.96  E-value=0.0034  Score=52.04  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .-|+++|++|||||||+++|..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999876

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.92  E-value=0.0059  Score=50.60  Aligned_cols=28  Identities=21%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +...+...|+++|.+|+|||||++.|..
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3444557899999999999999998876

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.91  E-value=0.0044  Score=51.16  Aligned_cols=27  Identities=15%  Similarity=0.293  Sum_probs=22.9

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+...+.|+++|.+||||||+.+.|..
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345567899999999999999998865

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.91  E-value=0.0039  Score=49.86  Aligned_cols=20  Identities=15%  Similarity=0.263  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCChhHHHHHh
Q psy15725         14 FKLVFLGEQSVGKTSLITRF   33 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l   33 (355)
                      +-|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.90  E-value=0.0038  Score=50.04  Aligned_cols=21  Identities=14%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .|+++|++|||||||++.|..
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.89  E-value=0.0037  Score=53.18  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++.+.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            489999999999999998877

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.87  E-value=0.0035  Score=51.84  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|+++|.+|||||||.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998876

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.86  E-value=0.004  Score=51.49  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..|+++|++|||||||++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            469999999999999999987743

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.84  E-value=0.0043  Score=51.82  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.83  E-value=0.016  Score=47.28  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=40.2

Q ss_pred             ceEEEEEEeCCCccc-ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        228 KQVRLQLWDTAGQER-FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~-~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ..+.+.+||+.|.+. ++.++..++..++++++|||+++..+++.+..|...+
T Consensus        54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l  106 (192)
T 2cjw_A           54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQL  106 (192)
T ss_dssp             EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence            456778999999766 5567778889999999999999999998877665543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.83  E-value=0.0037  Score=51.25  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            489999999999999999887

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.83  E-value=0.0045  Score=49.16  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999988843

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.82  E-value=0.0041  Score=52.51  Aligned_cols=21  Identities=19%  Similarity=0.339  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++.+.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999998877

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.82  E-value=0.0047  Score=49.31  Aligned_cols=21  Identities=10%  Similarity=0.222  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .|++.|.+||||||+.++|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.82  E-value=0.0051  Score=51.13  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ...|+++|+.|||||||++.+.+
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998877

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.81  E-value=0.0044  Score=51.73  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.78  E-value=0.0046  Score=50.44  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|++|+|||||++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.78  E-value=0.0046  Score=49.79  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|+++|.+||||||+.++|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999876

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.76  E-value=0.0051  Score=51.18  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++|+++|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.75  E-value=0.0047  Score=51.01  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.|+++|++|||||||++.+.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.74  E-value=0.005  Score=52.64  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFM   34 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~   34 (355)
                      ..|+++|++|||||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999988

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.74  E-value=0.0049  Score=49.76  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|++|+|||||++++..
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            589999999999999999987

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.72  E-value=0.0049  Score=52.60  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .++++|+.|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988873

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.68  E-value=0.0055  Score=50.62  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++|+++|.+||||||+++.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999998876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.68  E-value=0.0056  Score=52.14  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++.+.+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999998877

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.67  E-value=0.0053  Score=51.42  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++.+.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999998877

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.66  E-value=0.005  Score=51.30  Aligned_cols=21  Identities=29%  Similarity=0.180  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++.+.+
T Consensus        24 ~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999887

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.65  E-value=0.0056  Score=54.10  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++|+|++|+|||||++.+.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            689999999999999999887

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.64  E-value=0.0059  Score=50.26  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            699999999999999998876

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.63  E-value=0.0054  Score=53.11  Aligned_cols=21  Identities=14%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|+.|+|||||++.+.+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999998877

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.62  E-value=0.023  Score=46.69  Aligned_cols=48  Identities=10%  Similarity=0.103  Sum_probs=33.8

Q ss_pred             EEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         85 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        85 ~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      ..+.++|+|+..  .......+..+|.+++++..+...  .....+++.++.
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~  123 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLE  123 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHT
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHH
Confidence            457899999864  334445677899999999886654  566666666654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.61  E-value=0.0083  Score=48.16  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|+++|++|||||||++.+..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999998866

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.61  E-value=0.0055  Score=52.99  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      =.++++|+.|||||||++.+.+.
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            36899999999999999998873

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.60  E-value=0.0056  Score=53.38  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++.+.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999998877

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.60  E-value=0.0062  Score=52.08  Aligned_cols=22  Identities=18%  Similarity=0.298  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .++++|+.|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988873

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.58  E-value=0.0058  Score=52.76  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999998877

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.57  E-value=0.0064  Score=52.12  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988773

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.57  E-value=0.0071  Score=49.22  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .|++.|.+||||||+.++|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999876

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.56  E-value=0.0057  Score=53.07  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .++++|+.|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999988873

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.56  E-value=0.0058  Score=49.42  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.++++|++|+|||||++.+.+
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999877

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.55  E-value=0.0066  Score=51.39  Aligned_cols=21  Identities=38%  Similarity=0.453  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++.+.+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999998877

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.54  E-value=0.0068  Score=49.30  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|++.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998866

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.54  E-value=0.0036  Score=50.41  Aligned_cols=21  Identities=48%  Similarity=0.662  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++|+|++|+|||||++.+.+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999887

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.52  E-value=0.007  Score=49.88  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.|+++|++||||||+...|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999998876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.52  E-value=0.0063  Score=51.91  Aligned_cols=21  Identities=19%  Similarity=0.395  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999998877

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.52  E-value=0.0063  Score=52.23  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++.+.+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            479999999999999998877

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.52  E-value=0.0062  Score=52.70  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        52 i~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHc
Confidence            478999999999999998877

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.51  E-value=0.0069  Score=50.89  Aligned_cols=22  Identities=18%  Similarity=0.182  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|+++|++||||||+++.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998876

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.50  E-value=0.007  Score=50.48  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998866

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.49  E-value=0.0067  Score=52.09  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999887

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.46  E-value=0.0073  Score=52.18  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .++++|+.|+|||||++.+.+.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999998873

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.45  E-value=0.0099  Score=49.27  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ...|++.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.44  E-value=0.0069  Score=52.20  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999998887

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.42  E-value=0.0075  Score=49.76  Aligned_cols=23  Identities=17%  Similarity=0.173  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ...|+++|++|+|||||.+.+..
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998876

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.41  E-value=0.0054  Score=51.87  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCChhHHHHHhh-h
Q psy15725         15 KLVFLGEQSVGKTSLITRFM-Y   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~-~   35 (355)
                      -|+++|++|||||||++.|. +
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~   50 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEK   50 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            58999999999999999988 6

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.41  E-value=0.0072  Score=52.58  Aligned_cols=22  Identities=14%  Similarity=0.228  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .++++|+.|+|||||++-+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988773

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.41  E-value=0.0094  Score=48.29  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.39  E-value=0.0074  Score=50.68  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -++++|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999873

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.39  E-value=0.0078  Score=54.44  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      ....|+++|++|||||||+|+|++.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999973

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.38  E-value=0.0076  Score=52.31  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999887

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.38  E-value=0.0076  Score=48.48  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|++.|.+||||||+.++|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999876

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.35  E-value=0.0076  Score=51.87  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988873

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.35  E-value=0.0075  Score=53.60  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=21.9

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+..-|+|+|++|||||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3456899999999999999998877

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.34  E-value=0.0084  Score=52.39  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .++++|+.|+|||||++-+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4799999999999999988773

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.34  E-value=0.0094  Score=48.54  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|+++|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.33  E-value=0.013  Score=48.31  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ....|++.|.+||||||+.++|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.33  E-value=0.0098  Score=49.19  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.32  E-value=0.0096  Score=50.84  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +.++|++.|++||||||+.++|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.32  E-value=0.008  Score=52.13  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999998877

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.30  E-value=0.01  Score=48.38  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ...|++.|.+||||||+.++|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.28  E-value=0.01  Score=48.18  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..+|+++|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998876

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.27  E-value=0.0041  Score=52.46  Aligned_cols=154  Identities=17%  Similarity=0.179  Sum_probs=100.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...++|+++|++|||||||+++|++..+....                       .+....+........  ....+.+|
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~-----------------------~~~~t~~~~~~~~~~--~~~~~~l~   81 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS-----------------------YSFTTKNLYVGHFDH--KLNKYQII   81 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC-----------------------C-----CEEEEEEEE--TTEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC-----------------------CCCcceeeeeeeeec--CCCeEEEE
Confidence            35699999999999999999999985532110                       011111111112222  23679999


Q ss_pred             ecCCccccc---------ccccccccCccEEEEEEECCCcchhhh--HHHHHHHHhhhcCCceEEeeccccccccccccc
Q psy15725         91 DTAGQERFR---------SLIPSYIRDSTVAVVVYDITNANSFHQ--TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSF  159 (355)
Q Consensus        91 D~~g~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
                      ||||+....         ..+..++..+|++++|||++++.+|+.  ...|+..+..                       
T Consensus        82 DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~-----------------------  138 (228)
T 2qu8_A           82 DTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS-----------------------  138 (228)
T ss_dssp             ECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT-----------------------
T ss_pred             ECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHH-----------------------
Confidence            999983211         112234678899999999999988862  2345555532                       


Q ss_pred             cccCccccCccccccccccCCCccEEEEEeecCCCCcccceehh---hhhhhhhccC--eEEEEeeeeeccccceEE
Q psy15725        160 HHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE---EGERKAKELN--VMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~---~~~~~~~~~~--~~~~~~sa~~~~~v~~i~  231 (355)
                                         ...++|+++|+||+|+.+.+.+...   ....++...+  .+++++|+.++.+++.++
T Consensus       139 -------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  196 (228)
T 2qu8_A          139 -------------------VFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAK  196 (228)
T ss_dssp             -------------------CC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHH
T ss_pred             -------------------hhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHH
Confidence                               1247999999999999776655443   3445556666  899999999998887643

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.27  E-value=0.0092  Score=47.47  Aligned_cols=22  Identities=14%  Similarity=0.301  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++|++.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998866

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.26  E-value=0.011  Score=48.94  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            6799999999999999999876

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.23  E-value=0.048  Score=50.65  Aligned_cols=81  Identities=19%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh---cCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee---ecCcEE
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY---DSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY---LEDRTV   85 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~   85 (355)
                      +-.=|+|+|..++|||+|+|.|+.   .. .+....  .+.......|..+  .....-|.|+-.+...+.   .++...
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~-~~~~w~--~~~~~~~~gF~~~--~~~~~~TkGIWmw~~p~~~~~~~g~~~  140 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQ-ESVDWV--GDYNEPLTGFSWR--GGSERETTGIQIWSEIFLINKPDGKKV  140 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHHHHHHCT-TCTTTT--CCTTCCCCSSCCC--CSSSCCCCSEEEESSCEEEECTTSCEE
T ss_pred             ceEEEEEECCCCCchhHHHHHHHHHhhcc-cccccc--cccccCCCCceeC--CCCCCcCceEEEecCcccccCCCCCee
Confidence            556678999999999999996653   11 000000  0000000011111  122233556555544332   256678


Q ss_pred             EEEEEecCCccc
Q psy15725         86 RLQLWDTAGQER   97 (355)
Q Consensus        86 ~~~i~D~~g~~~   97 (355)
                      .+.++||.|...
T Consensus       141 ~vlllDTEG~~d  152 (457)
T 4ido_A          141 AVLLMDTQGTFD  152 (457)
T ss_dssp             EEEEEEECCBTC
T ss_pred             EEEEEeccCCCC
Confidence            999999999643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.23  E-value=0.0083  Score=47.08  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.++++|++|+|||+|++.+.+
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999887

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.21  E-value=0.01  Score=48.09  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|+++|.+||||||+.++|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.19  E-value=0.013  Score=51.53  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=21.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+...|+|+|++|||||||++.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999988876

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.19  E-value=0.01  Score=51.38  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      .++++|+.|+|||||++-+.+..
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999888743

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.18  E-value=0.015  Score=47.17  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|++.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=95.16  E-value=0.0084  Score=54.57  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .-+++|+|++|+|||||++.+.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998873

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.15  E-value=0.013  Score=48.11  Aligned_cols=22  Identities=32%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|++.|.+||||||+++.|..
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.14  E-value=0.01  Score=49.90  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|+++|.+||||||+.++|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999875

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.13  E-value=0.011  Score=47.44  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .|+++|.+|||||||+.++..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999887

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=95.12  E-value=0.015  Score=55.85  Aligned_cols=53  Identities=19%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL  234 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i  234 (355)
                      +.|+++|+||+|+.+.+.+...+....+...+.+++++|+.++.+++.++..+
T Consensus       150 ~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l  202 (535)
T 3dpu_A          150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL  202 (535)
T ss_dssp             SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHH
T ss_pred             CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHH
Confidence            68999999999998777777777888888888899999999999988765444

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.10  E-value=0.006  Score=49.40  Aligned_cols=150  Identities=14%  Similarity=0.236  Sum_probs=108.1

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      .+.+.++|+++|++|||||||+++|.+..+..                       ...+++..+.....+..+  ...+.
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~-----------------------~~~~~~t~~~~~~~~~~~--~~~~~   57 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYI-----------------------GNWPGVTVEKKEGEFEYN--GEKFK   57 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEE-----------------------EECTTSCCEEEEEEEEET--TEEEE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccc-----------------------cCCCCeeccceEEEEEeC--CcEEE
Confidence            34577999999999999999999999843211                       112333333344444443  36899


Q ss_pred             EEecCCccccc------cccccccc--CccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         89 LWDTAGQERFR------SLIPSYIR--DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        89 i~D~~g~~~~~------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      +|||||+..+.      .++..+++  .+|++++|+|.++   ++....|+..+..                        
T Consensus        58 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~------------------------  110 (188)
T 2wjg_A           58 VVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME------------------------  110 (188)
T ss_dssp             EEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT------------------------
T ss_pred             EEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh------------------------
Confidence            99999998875      34555554  4999999999875   5666677776643                        


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                                          .++|+++|+||+|+...+.+. ....+++...+.+++++|+.++.+++.++
T Consensus       111 --------------------~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (188)
T 2wjg_A          111 --------------------MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELK  160 (188)
T ss_dssp             --------------------TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHH
T ss_pred             --------------------cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHH
Confidence                                278999999999986554444 35567777778899999999988877643

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.09  E-value=0.012  Score=49.35  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +.|+++|.+||||||+.++|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998866

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.06  E-value=0.011  Score=47.62  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..|+++|.+||||||+.+.|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4699999999999999998875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.06  E-value=0.0078  Score=53.28  Aligned_cols=21  Identities=19%  Similarity=0.518  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        82 ~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHc
Confidence            689999999999999988776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-32
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	9e-28
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-32
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-29
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-31
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-31
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	5e-31
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-26
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-29
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	8e-25
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-27
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	6e-23
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	5e-27
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-22
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-26
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-24
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-26
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	8e-25
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-26
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-24
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-26
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-24
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	6e-26
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-19
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-24
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-20
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-24
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-22
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-22
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-22
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-22
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-16
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-21
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-17
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-21
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-16
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-20
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-16
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-20
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-15
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-20
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-15
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-20
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-18
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	6e-20
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	8e-14
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-20
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	5e-15
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	8e-20
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	6e-15
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-20
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-18
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-19
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-13
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-18
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-17
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-17
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-15
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-17
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-13
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-17
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-11
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	8e-17
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-12
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-16
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-15
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-16
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-13
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	4e-16
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	6e-14
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	5e-16
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-12
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-15
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-14
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-14
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-12
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-14
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-10
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	8e-14
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	5e-10
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	9e-14
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	7e-11
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-13
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	9e-13
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-13
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-12
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-13
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-09
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	8e-13
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-09
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-12
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-08
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	4e-12
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-07
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	8e-12
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	0.002
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	9e-12
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	0.002
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-10
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-07
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	4e-10
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-08
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-10
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-09
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-09
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-09
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-08
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-08
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	0.001
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-04
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.001

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (294), Expect = 1e-32
 Identities = 68/188 (36%), Positives = 100/188 (53%), Gaps = 41/188 (21%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGKT ++ RF  D+F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y 
Sbjct: 17  VGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 76

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDITN                                           SF 
Sbjct: 77  RGAMGIMLVYDITN-----------------------------------------EKSFD 95

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
               WI ++     +DV  M++GNK D++DKRQVS E GE+ A +  + F+ETSAKA  N
Sbjct: 96  NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 155

Query: 227 VKQVRLQL 234
           V+     L
Sbjct: 156 VENAFFTL 163

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (261), Expect = 9e-28
 Identities = 53/118 (44%), Positives = 78/118 (66%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            + K+++LQ+WDTAGQERFR++  +Y R +   ++VYDITN  SF     WI ++     
Sbjct: 50  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS 109

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +DV  M++GNK D++DKRQVS E GE+ A +  + F+ETSAKA  NV+  F  +A  +
Sbjct: 110 ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 3e-32
 Identities = 66/221 (29%), Positives = 101/221 (45%), Gaps = 63/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK++ +G+  VGKT L+ RF   +F                         T+ +T+GIDF
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAF----------------------LAGTFISTVGIDF 44

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            +K + ++   V+LQ+WDTAGQERFRS+  +Y RD+   +++YD+T              
Sbjct: 45  RNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT-------------- 90

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                      +  SF     W+ ++      DV +ML+GNK D
Sbjct: 91  ---------------------------NKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 123

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            + +R V  E+GE+ AKE  + F+ETSAK G NV      +
Sbjct: 124 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAI 164

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 5e-29
 Identities = 52/114 (45%), Positives = 74/114 (64%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
           +V+LQ+WDTAGQERFRS+  +Y RD+   +++YD+TN  SF     W+ ++      DV 
Sbjct: 55  KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA 114

Query: 289 IMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +ML+GNK D + +R V  E+GE+ AKE  + F+ETSAK G NV   F  +A  L
Sbjct: 115 LMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 3e-31
 Identities = 140/221 (63%), Positives = 147/221 (66%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI                        IDF
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG-----------------------IDF 37

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
           LSKTMYLEDRT+RLQLWDTAGQERFRSLIPSYIRDS  AVVVYD                
Sbjct: 38  LSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYD---------------- 81

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                      + NSF QT+KWIDDVRTERGSDVIIMLVGNKTD
Sbjct: 82  -------------------------ITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 116

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           L+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQ+  ++
Sbjct: 117 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 157

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 5e-31
 Identities = 108/121 (89%), Positives = 112/121 (92%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
              + +RLQLWDTAGQERFRSLIPSYIRDS  AVVVYDITN NSF QT+KWIDDVRTERG
Sbjct: 44  LEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 103

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
           SDVIIMLVGNKTDL+DKRQVS EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG
Sbjct: 104 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163

Query: 345 M 345
           M
Sbjct: 164 M 164

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (283), Expect = 5e-31
 Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 42/188 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+ L+ RF+ D F+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQERFR++  +Y 
Sbjct: 13  VGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 72

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   ++VYDIT+  +F    +W   V      +  ++LVG                  
Sbjct: 73  RGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG------------------ 114

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                 D                      + R V+ ++GE  AKEL + FIE+SAK   N
Sbjct: 115 ---NKSDM---------------------ETRVVTADQGEALAKELGIPFIESSAKNDDN 150

Query: 227 VKQVRLQL 234
           V ++   L
Sbjct: 151 VNEIFFTL 158

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 2e-26
 Identities = 49/118 (41%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            N K+V+LQ+WDTAGQERFR++  +Y R +   ++VYDIT+  +F    +W   V     
Sbjct: 46  INGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN 105

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            +  ++LVGNK+D+ + R V+ ++GE  AKEL + FIE+SAK   NV ++F  +A  +
Sbjct: 106 DEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 5e-29
 Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK+V +G   VGKT L+ RF    F     ATI                       G+DF
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI-----------------------GVDF 42

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
           + KT+ +    V+LQ+WDTAGQERFRS+  SY R +   ++ YDIT   SF    +W+ +
Sbjct: 43  MIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE 102

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +     + VI +LVG    N   L+     S  +  ++                      
Sbjct: 103 IEQYASNKVITVLVG----NKIDLAERREVSQQRAEEF---------------------- 136

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
                          ++  ++ ++ETSAK   NV+++ L L
Sbjct: 137 ---------------SEAQDMYYLETSAKESDNVEKLFLDL 162

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (240), Expect = 8e-25
 Identities = 49/118 (41%), Positives = 77/118 (65%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            N ++V+LQ+WDTAGQERFRS+  SY R +   ++ YDIT   SF    +W+ ++     
Sbjct: 49  INGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS 108

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           + VI +LVGNK DL+++R+VS +  E  ++  ++ ++ETSAK   NV++LF  +A  L
Sbjct: 109 NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (260), Expect = 2e-27
 Identities = 68/221 (30%), Positives = 98/221 (44%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FKL+ +G   VGK+ L+ RF  D++ N Y +TI                       G+DF
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI-----------------------GVDF 43

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
             KT+ L+ +TV+LQ+WDTAGQERFR++  SY R S   ++VYD+T              
Sbjct: 44  KIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT-------------- 89

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                         SF+    W+ ++     S V+ +LVGNK D
Sbjct: 90  ---------------------------DQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           L DKR V  +  +  A    + F+ETSA    NV+   L +
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 163

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (229), Expect = 6e-23
 Identities = 50/129 (38%), Positives = 73/129 (56%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            + K V+LQ+WDTAGQERFR++  SY R S   ++VYD+T+  SF+    W+ ++     
Sbjct: 50  LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 109

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 344
           S V+ +LVGNK DL DKR V  +  +  A    + F+ETSA    NV+  F  +A  +  
Sbjct: 110 STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 169

Query: 345 MDSTENKPP 353
             S +N   
Sbjct: 170 SMSQQNLNE 178

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 5e-27
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 53/217 (24%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            KL+ LG+  VGKT+ + R+  + F+  +  T+         F         Q   G   
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVG------IDFREKRVVYNAQGPNGSS- 58

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
                  +   V LQLWDTAGQERFRSL  ++ RD+   ++++D+T+  SF     W   
Sbjct: 59  ------GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW--- 109

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                                           +  I+L+GNK D
Sbjct: 110 -------------------------------------MSQLQANAYCENPDIVLIGNKAD 132

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           L D+R+V+  +    A +  + + ETSA  G NV++ 
Sbjct: 133 LPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (224), Expect = 2e-22
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 14/171 (8%)

Query: 185 IMLVGN----KTDL--------SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL 232
           ++ +G+    KT           + + ++T   + + K +       +  +G   K V L
Sbjct: 8   LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK-VHL 66

Query: 233 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD-VIIML 291
           QLWDTAGQERFRSL  ++ RD+   ++++D+T+  SF     W+  ++     +   I+L
Sbjct: 67  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126

Query: 292 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +GNK DL D+R+V+  +    A +  + + ETSA  G NV++    +   +
Sbjct: 127 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 3e-26
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 64/224 (28%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           L   K++ +GE  VGK+SL+ RF  D+FD    ATI                       G
Sbjct: 5   LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI-----------------------G 41

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
           +DF  KT+ ++    +L +WDTAGQERFR+L PSY R +   ++VYD+T  ++F +   W
Sbjct: 42  VDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW 101

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           ++++ T    + I+ ++   + +  +                                  
Sbjct: 102 LNELETYCTRNDIVNMLVGNKIDKEN---------------------------------- 127

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
                  R+V   EG + A++ +++FIE SAK    V+    +L
Sbjct: 128 -------REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 164

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (236), Expect = 3e-24
 Identities = 39/124 (31%), Positives = 71/124 (57%), Gaps = 3/124 (2%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            +  + +L +WDTAGQERFR+L PSY R +   ++VYD+T  ++F +   W++++ T   
Sbjct: 51  VDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT 110

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL-- 342
            + I+ ++       + R+V   EG + A++ +++FIE SAK    V+  F  +   +  
Sbjct: 111 RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

Query: 343 -PGM 345
            PG+
Sbjct: 171 TPGL 174

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 3e-26
 Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK + +G+  VGK+ L                       + +F    F      TIG++F
Sbjct: 5   FKYIIIGDMGVGKSCL-----------------------LHQFTEKKFMADCPHTIGVEF 41

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            ++ + +  + ++LQ+WDTAGQERFR++  SY R +  A++VYDIT              
Sbjct: 42  GTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR------------- 88

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                        ++++  S W+ D R     + +I+L+GNK D
Sbjct: 89  ----------------------------RSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           L  +R V+ EE ++ A+E  ++F+E SAK G NV+   L+ 
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 161

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.9 bits (240), Expect = 8e-25
 Identities = 48/118 (40%), Positives = 78/118 (66%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            + ++++LQ+WDTAGQERFR++  SY R +  A++VYDIT  ++++  S W+ D R    
Sbjct: 48  VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 107

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            + +I+L+GNK DL  +R V+ EE ++ A+E  ++F+E SAK G NV+  F   A  +
Sbjct: 108 PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 4e-26
 Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK+V +G+  VGK++L                       ++RF  + F+   ++TIG++F
Sbjct: 5   FKVVLIGDSGVGKSNL-----------------------LSRFTRNEFNLESKSTIGVEF 41

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            ++++ ++ +T++ Q+WDTAGQER+R +  +Y R +  A++VYDI               
Sbjct: 42  ATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDI--------------- 86

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                         ++    +W+ ++R    S+++IMLVGNK+D
Sbjct: 87  --------------------------AKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           L   R V T+E    A++ N+ FIETSA    NV++    +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (235), Expect = 6e-24
 Identities = 45/115 (39%), Positives = 73/115 (63%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K ++ Q+WDTAGQER+R +  +Y R +  A++VYDI    ++    +W+ ++R    S++
Sbjct: 51  KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 110

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           +IMLVGNK+DL   R V T+E    A++ N+ FIETSA    NV++ F+ +   +
Sbjct: 111 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 4e-26
 Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK++ +G  SVGKTS + R+  DSF   + +T+                       GIDF
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV-----------------------GIDF 42

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
             KT+Y  D+ ++LQ+WDTAGQER+R++  +Y R +   +++YDI               
Sbjct: 43  KVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI--------------- 87

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                      +  SF+    W   ++T    +  ++LVGNK D
Sbjct: 88  --------------------------TNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           + D+R VS+E G + A  L   F E SAK   NVKQ   +L
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.3 bits (236), Expect = 3e-24
 Identities = 49/118 (41%), Positives = 73/118 (61%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            N K+++LQ+WDTAGQER+R++  +Y R +   +++YDITN  SF+    W   ++T   
Sbjct: 49  RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 108

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            +  ++LVGNK D+ D+R VS+E G + A  L   F E SAK   NVKQ F R+   +
Sbjct: 109 DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 6e-26
 Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 64/224 (28%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           +R++K+V LG   VGK++L  +F+  +F   Y  TI                        
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI------------------------ 36

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
            DF  K + ++     L++ DTAG E+F S+   YI++    ++VY + N  SF      
Sbjct: 37  EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPM 96

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
            D +   +  +                                         V ++LVGN
Sbjct: 97  RDQIIRVKRYE----------------------------------------KVPVILVGN 116

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           K DL  +R+VS+ EG   A+E    F+ETSAK+   V ++  ++
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 2e-19
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            +     L++ DTAG E+F S+   YI++    ++VY + N  SF       D +   + 
Sbjct: 46  VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105

Query: 285 -SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
              V ++LVGNK DL  +R+VS+ EG   A+E    F+ETSAK+   V +LF  +   +
Sbjct: 106 YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 2e-24
 Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 64/227 (28%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           GN + +FKLV LGE +VGK+SL                       + RF+   F    ++
Sbjct: 1   GNKICQFKLVLLGESAVGKSSL-----------------------VLRFVKGQFHEFQES 37

Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
           TIG  FL++T+ L+D TV+ ++WDTAGQER+ SL P Y R +  A+VVYDIT        
Sbjct: 38  TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT-------- 89

Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
                                            +  SF +   W+ +++ +   +++I L
Sbjct: 90  ---------------------------------NEESFARAKNWVKELQRQASPNIVIAL 116

Query: 188 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++ + +
Sbjct: 117 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 2e-20
 Identities = 49/119 (41%), Positives = 77/119 (64%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            +   V+ ++WDTAGQER+ SL P Y R +  A+VVYDITN  SF +   W+ +++ +  
Sbjct: 50  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
            +++I L GNK DL++KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (235), Expect = 6e-24
 Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK + +G+  VGK+ L+ +F    F   +  TI                        ++F
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-----------------------VEF 40

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            ++ + ++ + ++LQ+WDTAGQE FRS+  SY R +  A++VYDI               
Sbjct: 41  GARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI--------------- 85

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                         +F+  + W++D R    S+++IML+GNK+D
Sbjct: 86  --------------------------TRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 119

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           L  +R V  EEGE  A+E  ++F+ETSAK   NV++  +  
Sbjct: 120 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 160

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 6e-22
 Identities = 55/132 (41%), Positives = 84/132 (63%)

Query: 211 ELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH 270
           +L +     +     + KQ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F+
Sbjct: 33  DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 92

Query: 271 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 330
             + W++D R    S+++IML+GNK+DL  +R V  EEGE  A+E  ++F+ETSAK   N
Sbjct: 93  HLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 152

Query: 331 VKQLFRRVAAAL 342
           V++ F   A  +
Sbjct: 153 VEEAFINTAKEI 164

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.1 bits (225), Expect = 1e-22
 Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK + +G    GK+ L+ +F+   F +    TI                        ++F
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG-----------------------VEF 42

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            SK + +  + V+LQ+WDTAGQERFRS+  SY R +  A++VYDIT+             
Sbjct: 43  GSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS------------- 89

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                               +  L+    ++    S+            ++I+L GNK D
Sbjct: 90  -----------------RETYNALTNWLTDARMLASQN-----------IVIILCGNKKD 121

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           L   R+V+  E  R A+E  +MF+ETSA  G NV++  +Q 
Sbjct: 122 LDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 162

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 6e-22
 Identities = 51/118 (43%), Positives = 76/118 (64%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
              K V+LQ+WDTAGQERFRS+  SY R +  A++VYDIT+  +++  + W+ D R    
Sbjct: 49  VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 108

Query: 285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            +++I+L GNK DL   R+V+  E  R A+E  +MF+ETSA  G NV++ F + A  +
Sbjct: 109 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 7e-22
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 62/222 (27%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK++ LG+  VGK+SL+ R++ + FD     TI                        ++F
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG-----------------------VEF 43

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
           L+K + ++   V +Q+WDTAGQERFRSL   + R S   ++ + + ++ SF   S W  +
Sbjct: 44  LNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKE 103

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                                       +       +++GNK D
Sbjct: 104 FIYYA-------------------------------------DVKEPESFPFVILGNKID 126

Query: 194 LSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQVRLQL 234
           +S+ RQVSTEE +   ++  +  + ETSAK   NV     + 
Sbjct: 127 ISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 167

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 4e-16
 Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 6/120 (5%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR----TER 283
             V +Q+WDTAGQERFRSL   + R S   ++ + + ++ SF   S W  +       + 
Sbjct: 53  HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 112

Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAAL 342
                 +++GNK D+S+ RQVSTEE +   ++  +  + ETSAK   NV   F      +
Sbjct: 113 PESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 88.1 bits (217), Expect = 2e-21
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 64/224 (28%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           L   K++ +G   VGK++L  +FMYD F   Y+                           
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE------------------------PTK 37

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
            D   K + L+   V++ + DTAGQE + ++  +Y R     + V+ IT   SF  T+ +
Sbjct: 38  ADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADF 97

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
            + +   +  +                                        +V  +LVGN
Sbjct: 98  REQILRVKEDE----------------------------------------NVPFLLVGN 117

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           K+DL DKRQVS EE + +A + NV ++ETSAK   NV +V   L
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 77.3 bits (189), Expect = 1e-17
 Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 1/109 (0%)

Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-DVIIMLVG 293
            DTAGQE + ++  +Y R     + V+ IT   SF  T+ + + +   +   +V  +LVG
Sbjct: 57  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116

Query: 294 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
           NK+DL DKRQVS EE + +A + NV ++ETSAK   NV ++F  +   +
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 4e-21
 Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 65/224 (29%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           + ++KLV +G   VGK++L  + + + F + Y  TI                        
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE----------------------- 37

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
            D   K + ++  T  L + DTAGQE + ++   Y+R     + V+ I N  SF    ++
Sbjct: 38  -DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
            + ++  + SD                                        DV ++LVGN
Sbjct: 97  REQIKRVKDSD----------------------------------------DVPMVLVGN 116

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           K D    R V + + +  A+   + +IETSAK    V+     L
Sbjct: 117 KCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 2e-16
 Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            + +   L + DTAGQE + ++   Y+R     + V+ I N  SF    ++ + ++  + 
Sbjct: 46  IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105

Query: 285 -SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             DV ++LVGNK D    R V + + +  A+   + +IETSAK    V+  F  +   +
Sbjct: 106 SDDVPMVLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 2e-20
 Identities = 48/236 (20%), Positives = 78/236 (33%), Gaps = 79/236 (33%)

Query: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQA 67
           G+P +  K V +G+ +VGKT L+  +  ++F   Y  T+                     
Sbjct: 1   GSP-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------------- 38

Query: 68  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT 127
               D  S  + ++ + V L LWDTAGQE +  L P     + V+++ + +         
Sbjct: 39  ---FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLV-------- 87

Query: 128 SKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIML 187
                                               SF                +  I+L
Sbjct: 88  ---------------------------------SPASFENVRAKWYPEVRHHCPNTPIIL 114

Query: 188 VGNKTDLSDKRQVSTE------------EGERKAKELN-VMFIETSAKAGYNVKQV 230
           VG K DL D +    +            +G   AKE+  V ++E SA     +K V
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 170

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 2e-16
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 231 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIM 290
            L LWDTAGQE +  L P     + V+++ + + +  SF                +  I+
Sbjct: 54  NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII 113

Query: 291 LVGNKTDLSDKRQVSTE------------EGERKAKELN-VMFIETSAKAGYNVKQLFRR 337
           LVG K DL D +    +            +G   AKE+  V ++E SA     +K +F  
Sbjct: 114 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 173

Query: 338 VAAAL 342
              A+
Sbjct: 174 AIRAV 178

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 3e-20
 Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 78/233 (33%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           ++  K V +G+ +VGKT L+  +  + F + Y  T+                        
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV------------------------ 36

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
            D  + T+ +      L L+DTAGQE +  L P     + V +V + +            
Sbjct: 37  FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV----------- 85

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
                                           +SF    +      T        +LVG 
Sbjct: 86  ------------------------------SPSSFENVKEKWVPEITHHCPKTPFLLVGT 115

Query: 191 KTDLSDKRQV------------STEEGERKAKELNVM-FIETSAKAGYNVKQV 230
           + DL D                + E  E+ A++L  + ++E SA     +K V
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 1e-15
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 13/128 (10%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           +   L L+DTAGQE +  L P     + V +V + + + +SF    +      T      
Sbjct: 49  EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT 108

Query: 288 IIMLVGNKTDLSDKRQV------------STEEGERKAKELNVM-FIETSAKAGYNVKQL 334
             +LVG + DL D                + E  E+ A++L  + ++E SA     +K +
Sbjct: 109 PFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168

Query: 335 FRRVAAAL 342
           F     A 
Sbjct: 169 FDEAILAA 176

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.9 bits (206), Expect = 4e-20
 Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 67/227 (29%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R FK++ +G+ +VGKT L                         RF    F +  +ATIG+
Sbjct: 1   RIFKIIVIGDSNVGKTCL-----------------------TYRFCAGRFPDRTEATIGV 37

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSTVAVVVYDITNANSFHQTSKW 130
           DF  + + ++   +++QLWDTAGQERFR   +  Y R+    V VYD+TN  SFH    W
Sbjct: 38  DFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW 97

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           I++ +    ++                                        D+  +LVGN
Sbjct: 98  IEECKQHLLAN----------------------------------------DIPRILVGN 117

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKA---GYNVKQVRLQL 234
           K DL    QV T+  ++ A   ++   ETSAK      +V+ + + L
Sbjct: 118 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (172), Expect = 2e-15
 Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 5/120 (4%)

Query: 225 YNVKQVRLQLWDTAGQERFRSL-IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER 283
            + +++++QLWDTAGQERFR   +  Y R+    V VYD+TN  SFH    WI++ +   
Sbjct: 46  IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 105

Query: 284 GS-DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA---GYNVKQLFRRVA 339
            + D+  +LVGNK DL    QV T+  ++ A   ++   ETSAK      +V+ +F  +A
Sbjct: 106 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 4e-20
 Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 64/221 (28%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           FK+V LGE  VGKTSL+ R+  + F++ +  T+                          F
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG-----------------------ASF 40

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
           L+K + +  + V L +WDTAGQERF +L P Y RDS  A++VYDIT+ +SF +   W+ +
Sbjct: 41  LTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE 100

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +R   G+++ + +VG    N   L      S  +   +                      
Sbjct: 101 LRKMLGNEICLCIVG----NKIDLEKERHVSIQEAESY---------------------- 134

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
                          A+ +      TSAK    ++++ L L
Sbjct: 135 ---------------AESVGAKHYHTSAKQNKGIEELFLDL 160

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (193), Expect = 4e-18
 Identities = 47/115 (40%), Positives = 72/115 (62%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           K+V L +WDTAGQERF +L P Y RDS  A++VYDIT+ +SF +   W+ ++R   G+++
Sbjct: 50  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 109

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            + +VGNK DL  +R VS +E E  A+ +      TSAK    +++LF  +   +
Sbjct: 110 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (205), Expect = 6e-20
 Identities = 51/225 (22%), Positives = 78/225 (34%), Gaps = 64/225 (28%)

Query: 10  PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATI 69
           P    KLV +G   VGK++L  +F+   F + Y                           
Sbjct: 3   PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD------------------------PT 38

Query: 70  GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK 129
             D  +K   ++    RL + DTAGQE F ++   Y+R     ++V+ I +  SF++  K
Sbjct: 39  IEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK 98

Query: 130 WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVG 189
               +   +  D   +                                        +LVG
Sbjct: 99  LFTQILRVKDRDDFPV----------------------------------------VLVG 118

Query: 190 NKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           NK DL  +RQV   E        +V + E SAK   NV +   QL
Sbjct: 119 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 163

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (161), Expect = 8e-14
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            +    RL + DTAGQE F ++   Y+R     ++V+ I +  SF++  K    +   + 
Sbjct: 49  VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 108

Query: 285 SD-VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            D   ++LVGNK DL  +RQV   E        +V + E SAK   NV + F ++  A+
Sbjct: 109 RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 7e-20
 Identities = 55/223 (24%), Positives = 91/223 (40%), Gaps = 64/223 (28%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
            K++LV +G   VGK++L  +F+   F   Y                             
Sbjct: 4   EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYD------------------------PTIE 39

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           D  +K   ++DR  RL + DTAGQE F ++   Y+R     ++V+ +T+  SF +  K+ 
Sbjct: 40  DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKF- 98

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                                                      +R +   +  ++L+GNK
Sbjct: 99  ---------------------------------------QRQILRVKDRDEFPMILIGNK 119

Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
            DL  +RQV+ EEG++ A++L V ++E SAK   NV Q   +L
Sbjct: 120 ADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 5e-15
 Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 1/119 (0%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD-VRTER 283
            + +  RL + DTAGQE F ++   Y+R     ++V+ +T+  SF +  K+    +R + 
Sbjct: 48  IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107

Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
             +  ++L+GNK DL  +RQV+ EEG++ A++L V ++E SAK   NV Q F  +   +
Sbjct: 108 RDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 8e-20
 Identities = 42/218 (19%), Positives = 74/218 (33%), Gaps = 54/218 (24%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K V +G+ +VGKT L+  +  D+F   Y  T+                         D 
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV------------------------FDH 45

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
            + ++ +  +   L L+DTAGQE +  L P     + V ++ + + N  SF    +    
Sbjct: 46  YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVP 105

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
              E   +V  +L+G        L                                    
Sbjct: 106 ELKEYAPNVPFLLIG----TQIDLRDDPKTLARLNDMKE--------------------- 140

Query: 194 LSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
               + +  E+G++ AKE+    ++E SA     +K V
Sbjct: 141 ----KPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 174

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 6e-15
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 13/126 (10%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI 288
           Q  L L+DTAGQE +  L P     + V ++ + + N  SF    +       E   +V 
Sbjct: 56  QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP 115

Query: 289 IMLVGNKTDLSDKRQ------------VSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 335
            +L+G + DL D  +            +  E+G++ AKE+    ++E SA     +K +F
Sbjct: 116 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 175

Query: 336 RRVAAA 341
                A
Sbjct: 176 DEAIIA 181

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.1 bits (204), Expect = 9e-20
 Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 64/224 (28%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           LR+ K+  LG+  VGK+S++ RF+ DSFD     TI                        
Sbjct: 2   LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG----------------------- 38

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
             F++KT+  ++   +  +WDTAG ERFR+L P Y R S  A++VYDI            
Sbjct: 39  ASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDI------------ 86

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
                                            +F     W+ ++R      +++ + GN
Sbjct: 87  -----------------------------TKEETFSTLKNWVRELRQHGPPSIVVAIAGN 117

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           K DL+D R+V   + +  A  ++ +F+ETSAK   N+ ++ +++
Sbjct: 118 KCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 161

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (190), Expect = 9e-18
 Identities = 42/111 (37%), Positives = 67/111 (60%)

Query: 233 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLV 292
            +WDTAG ERFR+L P Y R S  A++VYDIT   +F     W+ ++R      +++ + 
Sbjct: 56  LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 115

Query: 293 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
           GNK DL+D R+V   + +  A  ++ +F+ETSAK   N+ +LF  ++  +P
Sbjct: 116 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 3e-19
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 65/225 (28%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           +R++KLV LG   VGK++L  +F+   F   Y  TI                        
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI------------------------ 36

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
            D   K + ++ +   L++ DTAG E+F ++   Y+++     +VY IT  ++F+     
Sbjct: 37  EDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
            + +   + ++                                        DV ++LVGN
Sbjct: 97  REQILRVKDTE----------------------------------------DVPMILVGN 116

Query: 191 KTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQVRLQL 234
           K DL D+R V  E+G+  A++  N  F+E+SAK+  NV ++   L
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 1e-13
 Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 2/120 (1%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTER 283
            + +Q  L++ DTAG E+F ++   Y+++     +VY IT  ++F+      + + R + 
Sbjct: 46  VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105

Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLFRRVAAAL 342
             DV ++LVGNK DL D+R V  E+G+  A++  N  F+E+SAK+  NV ++F  +   +
Sbjct: 106 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.7 bits (195), Expect = 2e-18
 Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 38/188 (20%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+S++ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQERF SL P Y 
Sbjct: 14  VGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYY 73

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R++  A+VVYD+T   SF +   W+ ++  +   D+II LVG+                 
Sbjct: 74  RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE---------- 123

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                                         +R+V+ EEGE+ A+E  ++F ETSAK G N
Sbjct: 124 ----------------------------GGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155

Query: 227 VKQVRLQL 234
           V  V L +
Sbjct: 156 VNDVFLGI 163

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.2 bits (186), Expect = 3e-17
 Identities = 51/112 (45%), Positives = 72/112 (64%), Gaps = 3/112 (2%)

Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGN 294
           WDTAGQERF SL P Y R++  A+VVYD+T   SF +   W+ ++  +   D+II LVGN
Sbjct: 57  WDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN 116

Query: 295 KTDL---SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 343
           K D+     +R+V+ EEGE+ A+E  ++F ETSAK G NV  +F  +   +P
Sbjct: 117 KIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 2e-17
 Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 73/227 (32%)

Query: 7   FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
           FGN  ++ +++ LG  + GKT+++ +        T                         
Sbjct: 8   FGN--KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP----------------------- 42

Query: 67  ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
               + F  +T+    + V+  +WD  GQ++ R L   Y   +   + V D  + +   +
Sbjct: 43  ---TVGFNVETVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 97

Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
             +                                             +      D II+
Sbjct: 98  ARQE----------------------------------------LHRIINDREMRDAIIL 117

Query: 187 LVGNKTDLSDKR---QVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           +  NK DL D     ++  + G  + ++ N     + A +G  + + 
Sbjct: 118 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 164

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 2e-15
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
              K V+  +WD  GQ++ R L   Y   +   + V D  + +   +  + +  +  +R 
Sbjct: 51  VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 110

Query: 285 -SDVIIMLVGNKTDLSDKR---QVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 340
             D II++  NK DL D     ++  + G  + ++ N     + A +G  + +    + +
Sbjct: 111 MRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 170

Query: 341 AL 342
             
Sbjct: 171 NY 172

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (188), Expect = 2e-17
 Identities = 45/219 (20%), Positives = 74/219 (33%), Gaps = 54/219 (24%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           + KLV +G+ + GKT L+     D F   Y  T+                         +
Sbjct: 2   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF------------------------E 37

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
                + ++ + V L LWDTAG E +  L P    D+ V ++ + I + +S     +   
Sbjct: 38  NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT 97

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
                   +V I+LV                         +D  T R           + 
Sbjct: 98  PEVKHFCPNVPIILV------------------GNKKDLRNDEHTRR-----------EL 128

Query: 193 DLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQV 230
               +  V  EEG   A  +    ++E SAK    V++V
Sbjct: 129 AKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREV 167

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 4e-13
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            + KQV L LWDTAG E +  L P    D+ V ++ + I + +S     +          
Sbjct: 45  VDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC 104

Query: 285 SDVIIMLVGNKTDLSDKRQV------------STEEGERKAKELNVM-FIETSAKAGYNV 331
            +V I+LVGNK DL +                  EEG   A  +    ++E SAK    V
Sbjct: 105 PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV 164

Query: 332 KQLFRRVAAAL 342
           +++F     A 
Sbjct: 165 REVFEMATRAA 175

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.3 bits (186), Expect = 4e-17
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 60/217 (27%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K++ LG+  VGKTSL                       + +++   F N Y+ATIG DF
Sbjct: 3   LKVIILGDSGVGKTSL-----------------------MNQYVNKKFSNQYKATIGADF 39

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
           L+K + ++DR V +Q+WDTAGQERF+SL  ++ R +   V+V+D+T  N+F         
Sbjct: 40  LTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-------- 91

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                               +++         +   +++GNK D
Sbjct: 92  -----------------------------TLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           L +++  +         + N+ + ETSAK   NV+Q 
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 159

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS-- 285
           + V +Q+WDTAGQERF+SL  ++ R +   V+V+D+T  N+F     W D+   +     
Sbjct: 49  RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 108

Query: 286 --DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL- 342
             +   +++GNK DL +++  +         + N+ + ETSAK   NV+Q F+ +A    
Sbjct: 109 PENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

Query: 343 --PGMDSTENKPPE 354
                    N+ PE
Sbjct: 169 KQETEVELYNEFPE 182

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (183), Expect = 8e-17
 Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 61/223 (27%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            K++ LG+  VGKTSL+ R++ D +   Y+ATI          +      T         
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM-------- 54

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
                         Q+WDTAGQERF+SL  ++ R +   V+VYD+TNA+SF         
Sbjct: 55  --------------QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFE-------- 92

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                        N      +++             +++GNK D
Sbjct: 93  -----------------------------NIKSWRDEFLVHANVNSPETFPFVILGNKID 123

Query: 194 LSDKRQVSTE-EGERKAKEL-NVMFIETSAKAGYNVKQVRLQL 234
             + +++ +E   +  AK L ++    TSAK   NV     ++
Sbjct: 124 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 166

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 12/168 (7%)

Query: 185 IMLVGN----KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240
           ++++G+    KT L    +   ++  ++ K        T        K   +Q+WDTAGQ
Sbjct: 5   VIILGDSGVGKTSLM--HRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGS----DVIIMLVGNKT 296
           ERF+SL  ++ R +   V+VYD+TNA+SF     W D+               +++GNK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 297 DLSDKRQVSTEEG-ERKAKEL-NVMFIETSAKAGYNVKQLFRRVAAAL 342
           D  + +++ +E+  +  AK L ++    TSAK   NV   F  +A + 
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 74.6 bits (182), Expect = 2e-16
 Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 71/222 (31%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           ++ +++ LG    GKT+++ R        T                          TIG 
Sbjct: 16  KELRILILGLDGAGKTTILYRLQIGEVVTTKP------------------------TIGF 51

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           +       L  + ++L +WD  GQ   R     Y  D+   + V D T+ +     SK  
Sbjct: 52  NV----ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE- 106

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                                                      ++ E   D  +++  NK
Sbjct: 107 ---------------------------------------LHLMLQEEELQDAALLVFANK 127

Query: 192 TDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            D        +VS E    + K+ +   + +SA  G  + + 
Sbjct: 128 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG 169

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 70.8 bits (172), Expect = 3e-15
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 16/166 (9%)

Query: 185 IMLVGN----KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQ 240
           I+++G     KT +  + Q+      +     NV  +          K ++L +WD  GQ
Sbjct: 20  ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSY--------KNLKLNVWDLGGQ 71

Query: 241 ERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIML-VGNKTDLS 299
              R     Y  D+   + V D T+ +     SK +  +  E       +L   NK D  
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 131

Query: 300 D---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
                 +VS E    + K+ +   + +SA  G  + +    +   +
Sbjct: 132 GALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.3 bits (181), Expect = 2e-16
 Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 54/216 (25%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           K K+V +G+   GKT+L+  F  D F   Y  T+                         +
Sbjct: 2   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV------------------------FE 37

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
             + +  ++ + + L LWDT+G   + ++ P    DS   ++ +DI+   +     K   
Sbjct: 38  NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK 97

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
               E   +  ++LVG                         D+RT+  + V       + 
Sbjct: 98  GEIQEFCPNTKMLLVG----------------------CKSDLRTDVSTLV-------EL 128

Query: 193 DLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNV 227
               +  VS ++G   AK++    +IE SA    N 
Sbjct: 129 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 164

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.8 bits (159), Expect = 2e-13
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 14/132 (10%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            + +++ L LWDT+G   + ++ P    DS   ++ +DI+   +     K       E  
Sbjct: 45  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 104

Query: 285 SDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELNVM-FIETSAKAGYN- 330
            +  ++LVG K+DL              +  VS ++G   AK++    +IE SA    N 
Sbjct: 105 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 164

Query: 331 VKQLFRRVAAAL 342
           V+ +F     A 
Sbjct: 165 VRDIFHVATLAC 176

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.8 bits (177), Expect = 4e-16
 Identities = 61/188 (32%), Positives = 81/188 (43%), Gaps = 42/188 (22%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
           VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE F ++  +Y 
Sbjct: 13  VGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYY 72

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R +   V+V+  T+  SF   S W + V  E G                           
Sbjct: 73  RGAQACVLVFSTTDRESFEAISSWREKVVAEVG--------------------------- 105

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 226
                          D+   LV NK DL D   +  EE E  AK L + F  TS K   N
Sbjct: 106 ---------------DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 150

Query: 227 VKQVRLQL 234
           V +V   L
Sbjct: 151 VSEVFKYL 158

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 6e-14
 Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 1/112 (0%)

Query: 228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDV 287
           + VRL LWDTAGQE F ++  +Y R +   V+V+  T+  SF   S W + V  E G D+
Sbjct: 49  EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DI 107

Query: 288 IIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
              LV NK DL D   +  EE E  AK L + F  TS K   NV ++F+ +A
Sbjct: 108 PTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 159

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.8 bits (177), Expect = 5e-16
 Identities = 50/222 (22%), Positives = 81/222 (36%), Gaps = 65/222 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           +KLV +G+  VGK++L  +F    F   Y  TI                         D 
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI------------------------EDS 40

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
             K   ++++   L + DTAGQE F ++   Y+R     ++VY +               
Sbjct: 41  YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV--------------- 85

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                       A+  H        +R +      ++LV NK D
Sbjct: 86  -------------------------TDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 120

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAG-YNVKQVRLQL 234
           L   R+V+ ++G+  A + N+ +IETSAK    NV +    L
Sbjct: 121 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 162

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 2/117 (1%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTER 283
            + +   L + DTAGQE F ++   Y+R     ++VY +T+  SF    ++   + R + 
Sbjct: 47  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 106

Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG-YNVKQLFRRVA 339
                ++LV NK DL   R+V+ ++G+  A + N+ +IETSAK    NV + F  + 
Sbjct: 107 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 163

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 2e-15
 Identities = 21/216 (9%), Positives = 61/216 (28%), Gaps = 65/216 (30%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           +++ +G  + GKT+++ +                                   T      
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV----------------------------TTIPTIG 33

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
                +E + +   +WD  GQ++ R L   Y +++   + V D  +    ++  + +  +
Sbjct: 34  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 93

Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
             E      ++                                     ++     +  + 
Sbjct: 94  LAEDELRDAVL-------------------------------------LVFANKQDLPNA 116

Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            +  +++ + G    +  N     T A +G  + + 
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 4e-14
 Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN-ANSFHQTSKWIDDVRTER 283
              K +   +WD  GQ++ R L   Y +++   + V D  +         + +  +  + 
Sbjct: 39  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 98

Query: 284 GSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 340
             D ++++  NK DL +     +++ + G    +  N     T A +G  + +    ++ 
Sbjct: 99  LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158

Query: 341 AL 342
            L
Sbjct: 159 QL 160

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 2e-14
 Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 63/217 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           +++   G   VGK+SL+ RF+  +F  +                       Y  T+   +
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRES-----------------------YIPTVEDTY 39

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
             + +  +     LQ+ DT G  +F ++    I      ++VY IT+  S  +     + 
Sbjct: 40  -RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ 98

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
           +   +G                                           + IMLVGNK D
Sbjct: 99  ICEIKGDV---------------------------------------ESIPIMLVGNKCD 119

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            S  R+V + E E  A+     F+ETSAK  +NVK++
Sbjct: 120 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKEL 156

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 4e-12
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            +     LQ+ DT G  +F ++    I      ++VY IT+  S  +     + +   +G
Sbjct: 45  CDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG 104

Query: 285 --SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
               + IMLVGNK D S  R+V + E E  A+     F+ETSAK  +NVK+LF+ + 
Sbjct: 105 DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 4e-14
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 67/222 (30%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
           +FKLV +G+   GKT+ + R +   F+  Y AT+                        ++
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-----------------------VE 39

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID 132
                 +     ++  +WDTAGQE+F  L   Y   +  A++++D+T+  ++     W  
Sbjct: 40  VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHR 99

Query: 133 DVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKT 192
           D+                                               ++ I+L GNK 
Sbjct: 100 DLVRV------------------------------------------CENIPIVLCGNKV 117

Query: 193 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           D+ D++     +     ++ N+ + + SAK+ YN ++  L L
Sbjct: 118 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 157

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-10
 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGN 294
           WDTAGQE+F  L   Y   +  A++++D+T+  ++     W  D+      ++ I+L GN
Sbjct: 57  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGN 115

Query: 295 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTE 349
           K D+ D++     +     ++ N+ + + SAK+ YN ++ F  +A  L G  + E
Sbjct: 116 KVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 8e-14
 Identities = 47/219 (21%), Positives = 73/219 (33%), Gaps = 64/219 (29%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +  K+  LG +SVGK+SL  +F+   F ++Y  TI                         
Sbjct: 3   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI------------------------E 38

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
           +  +K + +  +   LQL DTAGQ+ +     +Y  D                       
Sbjct: 39  NTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY------------------- 79

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                                   +      +           +       + IMLVGNK
Sbjct: 80  ---------------------ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 118

Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            DL  +R +S EEG+  A+  N  F+E+SAK       V
Sbjct: 119 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 157

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 5e-10
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            N ++  LQL DTAGQ+ +     +Y  D    ++VY +T+  SF         +    G
Sbjct: 47  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 106

Query: 285 S-DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
              + IMLVGNK DL  +R +S EEG+  A+  N  F+E+SAK       +FRR+ 
Sbjct: 107 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 9e-14
 Identities = 56/222 (25%), Positives = 81/222 (36%), Gaps = 66/222 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
            KL   G   VGK++L+ RF+   F   Y  T+                           
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL------------------------EST 38

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
                 ++D  V +++ DTAGQE        ++R     V+VYDIT+  SF +       
Sbjct: 39  YRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPL--- 94

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                                       ++  +V ++LVGNK D
Sbjct: 95  -------------------------------------KNILDEIKKPKNVTLILVGNKAD 117

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQVRLQL 234
           L   RQVSTEEGE+ A EL   F E SA  G  N+ ++  +L
Sbjct: 118 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 159

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 7e-11
 Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
            + + V +++ DTAGQE        ++R     V+VYDIT+  SF +     + +   + 
Sbjct: 45  IDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK 103

Query: 285 S-DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQLFRRVAAAL 342
             +V ++LVGNK DL   RQVSTEEGE+ A EL   F E SA  G  N+ ++F  +   +
Sbjct: 104 PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 2e-13
 Identities = 30/222 (13%), Positives = 60/222 (27%), Gaps = 71/222 (31%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           ++ K++ +G  + GKT+++ +F  +   +T                              
Sbjct: 14  QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS------------------------ 49

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
                   +     R  +WD  GQE  RS   +Y  ++   +VV D T+      T +  
Sbjct: 50  ----NVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE- 104

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                                                      +  E      +++  NK
Sbjct: 105 ---------------------------------------LYKMLAHEDLRKAGLLIFANK 125

Query: 192 TDLSDK---RQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
            D+ +     ++S        K+         A  G  + Q 
Sbjct: 126 QDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 167

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 9e-13
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD-V 287
             R  +WD  GQE  RS   +Y  ++   +VV D T+      T + +  +         
Sbjct: 58  NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA 117

Query: 288 IIMLVGNKTDLSDK---RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 342
            +++  NK D+ +     ++S        K+         A  G  + Q    + + L
Sbjct: 118 GLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 65.4 bits (158), Expect = 3e-13
 Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 71/227 (31%)

Query: 7   FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQ 66
              P ++ +++ LG  + GKT+L+ +   +   +                          
Sbjct: 10  KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP----------------------- 46

Query: 67  ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ 126
            T G +  S       +  +L +WD  GQ + R    SY  ++ + + V D  +   F +
Sbjct: 47  -TQGFNIKSVQS----QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEE 101

Query: 127 TSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIM 186
           T +                                           + +  E+ S V ++
Sbjct: 102 TGQE----------------------------------------LTELLEEEKLSCVPVL 121

Query: 187 LVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           +  NK DL        ++        ++        SA  G  V+  
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 168

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 4e-12
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-R 283
              +  +L +WD  GQ + R    SY  ++ + + V D  +   F +T + + ++  E +
Sbjct: 55  VQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK 114

Query: 284 GSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            S V +++  NK DL        ++        ++        SA  G  V+     V 
Sbjct: 115 LSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 63.5 bits (153), Expect = 7e-13
 Identities = 33/222 (14%), Positives = 60/222 (27%), Gaps = 71/222 (31%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R+ +L+ LG  + GKT+++ +F  +  D                            TI  
Sbjct: 1   RELRLLMLGLDNAGKTTILKKFNGEDVD----------------------------TISP 32

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
                   LE R  +L +WD  GQ+  RS   +Y   +   + V D  +        +  
Sbjct: 33  TLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE- 91

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                                                      +  ER +   +++  NK
Sbjct: 92  ---------------------------------------LQSLLVEERLAGATLLIFANK 112

Query: 192 TDLSDKRQVST---EEGERKAKELNVMFIETSAKAGYNVKQV 230
            DL      +           +  +      SA  G ++   
Sbjct: 113 QDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG 154

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 1e-09
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 4/122 (3%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV-RTER 283
              +  +L +WD  GQ+  RS   +Y   +   + V D  +        + +  +   ER
Sbjct: 41  LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 100

Query: 284 GSDVIIMLVGNKTDLSDKRQVST---EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 340
            +   +++  NK DL      +           +  +      SA  G ++      +  
Sbjct: 101 LAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160

Query: 341 AL 342
            +
Sbjct: 161 DI 162

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (153), Expect = 8e-13
 Identities = 45/217 (20%), Positives = 74/217 (34%), Gaps = 65/217 (29%)

Query: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDF 73
           +K++ LG   VGK++L   F                                        
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA-------------------------EAAGHT 36

Query: 74  LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD 133
             +++ ++     L ++D   Q+  R L    +      V+VY +T+  SF + S+    
Sbjct: 37  YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL--- 93

Query: 134 VRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 193
                                                 +   R  +  DV I+LVGNK+D
Sbjct: 94  -------------------------------------RVQLRRARQTDDVPIILVGNKSD 116

Query: 194 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           L   R+VS +EG   A   +  FIETSA   +NV+ +
Sbjct: 117 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL 153

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-09
 Identities = 28/74 (37%), Positives = 39/74 (52%)

Query: 269 FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG 328
              +   +   R  +  DV I+LVGNK+DL   R+VS +EG   A   +  FIETSA   
Sbjct: 88  EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALH 147

Query: 329 YNVKQLFRRVAAAL 342
           +NV+ LF  V   +
Sbjct: 148 HNVQALFEGVVRQI 161

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.2 bits (152), Expect = 1e-12
 Identities = 28/216 (12%), Positives = 57/216 (26%), Gaps = 58/216 (26%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
           KL+FLG  + GKT+L+     D                              AT+   + 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL----------------------------ATLQPTWH 33

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV 134
             +  L    ++   +D  G  + R L   Y  +    V + D  +   F +    +D +
Sbjct: 34  PTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDAL 93

Query: 135 RTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 194
                   +  ++                     +    ++R+  G              
Sbjct: 94  FNIAELKDVPFVI------------LGNKIDAPNAVSEAELRSALG-------------- 127

Query: 195 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
                ++T   +R   +  V     S        + 
Sbjct: 128 ----LLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA 159

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
             +  ++   +D  G  + R L   Y  +    V + D  +   F +    +D +     
Sbjct: 39  LAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE 98

Query: 285 S-DVIIMLVGNKTDLSDKRQVS----------TEEGERKAKELNVMFIETSAKAGYNVKQ 333
             DV  +++GNK D  +    +          T   +R   +  V     S        +
Sbjct: 99  LKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE 158

Query: 334 LFRRVA 339
            F+ ++
Sbjct: 159 AFQWLS 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 4e-12
 Identities = 34/227 (14%), Positives = 68/227 (29%), Gaps = 71/227 (31%)

Query: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIG 70
           + + +L  LG+   GK+SLI RF+  S+                                
Sbjct: 3   IPELRLGVLGDARSGKSSLIHRFLTGSYQVLE-------------------------KTE 37

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
            +   K M ++ +T  + + + A                                     
Sbjct: 38  SEQYKKEMLVDGQTHLVLIREEA------------------------------------G 61

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
             D +    +D +I +       F+    +   +  +    +  +R E    + + LVG 
Sbjct: 62  APDAKFSGWADAVIFV-------FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 114

Query: 191 KTDLSDK--RQVSTEEGERKAKEL-NVMFIETSAKAGYNVKQVRLQL 234
           +  +S    R V          ++    + ET A  G NV +V  ++
Sbjct: 115 QDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 161

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 267 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK--RQVSTEEGERKAKEL-NVMFIET 323
            +  +    +  +R E    + + LVG +  +S    R V          ++    + ET
Sbjct: 87  QAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYET 146

Query: 324 SAKAGYNVKQLFRRVAAAL 342
            A  G NV ++F+ VA  +
Sbjct: 147 CATYGLNVDRVFQEVAQKV 165

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.5 bits (148), Expect = 8e-12
 Identities = 29/221 (13%), Positives = 57/221 (25%), Gaps = 37/221 (16%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R+ KL+ LG    GK++ I +                                   T GI
Sbjct: 1   RELKLLLLGTGESGKSTFIKQMRIIHGS-------------------------GVPTTGI 35

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
                 +         ++ D  GQ   R        + T  + +  ++  +     S   
Sbjct: 36  IEYPFDLQSVIF----RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN- 90

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                E   +    L  +I T     +       ++     + +      D      G +
Sbjct: 91  -----ENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQ 145

Query: 192 TDLSDKRQVSTEEGER--KAKELNVMFIETSAKAGYNVKQV 230
            D    R+   +         +  +    T A    N++ V
Sbjct: 146 RDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV 186

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 17/152 (11%), Positives = 45/152 (29%), Gaps = 37/152 (24%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK---------- 274
           ++++ V  ++ D  GQ   R        + T  + +  ++  +     S           
Sbjct: 40  FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA 99

Query: 275 -WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE----------------------- 310
            +   +      +  ++L  NK DL +++ + +   +                       
Sbjct: 100 LFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159

Query: 311 ---RKAKELNVMFIETSAKAGYNVKQLFRRVA 339
                  +  +    T A    N++ +F  V 
Sbjct: 160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 191

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.5 bits (148), Expect = 9e-12
 Identities = 30/222 (13%), Positives = 66/222 (29%), Gaps = 39/222 (17%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R  K++ LG    GK++ + +                              +    T GI
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM--------------------------RIIHGQDPTKGI 34

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
                    E + V  ++ D  GQ   R          T  + +   +  +      +  
Sbjct: 35  HEYD----FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQT 90

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
           +  R     ++   +V +   +   +        ++T    + V+     D  +   G+ 
Sbjct: 91  N--RLTESLNIFETIVNNRVFSNVSIIL----FLNKTDLLEEKVQVVSIKDYFLEFEGDP 144

Query: 192 TDLSDKRQVSTEEGERKAK---ELNVMFIETSAKAGYNVKQV 230
             L D ++   E    K +   +  +    T+A    N++ V
Sbjct: 145 HCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 186

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 38/151 (25%)

Query: 226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD------- 278
            +K V  ++ D  GQ   R          T  + +   +  +      +  +        
Sbjct: 40  EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 99

Query: 279 ----VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGE------------------------ 310
               V     S+V I+L  NKTDL +++       +                        
Sbjct: 100 FETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFR 159

Query: 311 ---RKAKELNVMFIETSAKAGYNVKQLFRRV 338
              R  ++  +    T+A    N++ +FR V
Sbjct: 160 GKRRDQQQRPLYHHFTTAINTENIRLVFRDV 190

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 57.4 bits (137), Expect = 2e-10
 Identities = 24/219 (10%), Positives = 53/219 (24%), Gaps = 53/219 (24%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           +  KLVFLG  + GKT+L+     D                                   
Sbjct: 12  KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP------------------------ 47

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
                +  L    +    +D  G  + R +  +Y+      V + D  +     ++ + +
Sbjct: 48  ----TSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEEL 103

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
           D + T+     + +L+                          D       + +       
Sbjct: 104 DSLMTDETIANVPILILG---------------------NKIDRPEAISEERLR----EM 138

Query: 192 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
             L  +         ++     +     S        + 
Sbjct: 139 FGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 177

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 16/124 (12%)

Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVG 293
           +D  G  + R +  +Y+      V + D  +     ++ + +D + T+   ++V I+++G
Sbjct: 62  FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121

Query: 294 NKTDLSDKRQVS---------------TEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 338
           NK D  +                         ++     +     S        + FR +
Sbjct: 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181

Query: 339 AAAL 342
           A  +
Sbjct: 182 AQYI 185

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 4e-10
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 47/191 (24%)

Query: 47  VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 106
            GKT+ +       F+     T+G +       +    V ++LWD  GQ RFRS+   Y 
Sbjct: 13  SGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQPRFRSMWERYC 68

Query: 107 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFH 166
           R  +  V + D  +      +                                       
Sbjct: 69  RGVSAIVYMVDAADQEKIEASKNE------------------------------------ 92

Query: 167 QTSKWIDDVRTERGSDVIIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKA 223
                 + +   +   + ++++GNK DL     ++++  +      ++  +     S K 
Sbjct: 93  ----LHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKE 148

Query: 224 GYNVKQVRLQL 234
             N+      L
Sbjct: 149 KDNIDITLQWL 159

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 22/115 (19%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGSDV 287
            V ++LWD  GQ RFRS+   Y R  +  V + D  +      +   + ++  + +   +
Sbjct: 46  NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGI 105

Query: 288 IIMLVGNKTDLSD---KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 339
            ++++GNK DL     ++++  +      ++  +     S K   N+    + + 
Sbjct: 106 PVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 5e-10
 Identities = 42/224 (18%), Positives = 73/224 (32%), Gaps = 63/224 (28%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFD-NTYQATIG 70
             +++V +GEQ VGK++L                          F       ++    +G
Sbjct: 2   TYYRVVLIGEQGVGKSTL-----------------------ANIFAGVHDSMDSDCEVLG 38

Query: 71  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW 130
            D   +T+ ++  +  + L D    +     +  +      A                  
Sbjct: 39  EDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY----------------- 81

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
                                    +     A+    +   I   R  +  D+ I+LVGN
Sbjct: 82  ----------------------LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 119

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQL 234
           K+DL   R+VS  EG   A   +  FIETSA   +NVK++   +
Sbjct: 120 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 163

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-09
 Identities = 28/76 (36%), Positives = 40/76 (52%)

Query: 267 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 326
           +    +   I   R  +  D+ I+LVGNK+DL   R+VS  EG   A   +  FIETSA 
Sbjct: 92  SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAA 151

Query: 327 AGYNVKQLFRRVAAAL 342
             +NVK+LF  +   +
Sbjct: 152 VQHNVKELFEGIVRQV 167

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.4 bits (130), Expect = 3e-09
 Identities = 23/234 (9%), Positives = 53/234 (22%), Gaps = 50/234 (21%)

Query: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGID 72
             +L+ LG    GK++++ +                                   T GI 
Sbjct: 6   THRLLLLGAGESGKSTIVKQM---------------------------RILHVVLTSGIF 38

Query: 73  FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI- 131
                   +   V   ++D  GQ   R        D T  + V   ++ N   +      
Sbjct: 39  ETK----FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTN 94

Query: 132 ----------DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGS 181
                               + ++L  + +               +   +  +       
Sbjct: 95  RLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKV---LAGKSKIEDYFPEFARYTTP 151

Query: 182 DVIIMLVGNKTDLSD-----KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
           +      G    ++      + +                   T A    N+++V
Sbjct: 152 EDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 205

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-09
 Identities = 28/222 (12%), Positives = 56/222 (25%), Gaps = 71/222 (31%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R+ +++ LG    GKT+++ R        T                              
Sbjct: 4   REMRILILGLDGAGKTTILYRLQVGEVVTTIP---------------------------- 35

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI 131
                   +  + ++ Q+WD  G    R     Y  ++   + V D  + +    +    
Sbjct: 36  TIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSE- 94

Query: 132 DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGNK 191
                                                   +  +  E     I+++  NK
Sbjct: 95  ---------------------------------------LVAMLEEEELRKAILVVFANK 115

Query: 192 TDLSDKRQVS---TEEGERKAKELNVMFIETSAKAGYNVKQV 230
            D+      S      G    K+      +TSA  G  + + 
Sbjct: 116 QDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 157

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 4/122 (3%)

Query: 225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG 284
              K ++ Q+WD  G    R     Y  ++   + V D  + +    +   +  +  E  
Sbjct: 44  VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 103

Query: 285 SDVI-IMLVGNKTDLSDKRQVS---TEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 340
                +++  NK D+      S      G    K+      +TSA  G  + +    +  
Sbjct: 104 LRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 163

Query: 341 AL 342
            L
Sbjct: 164 TL 165

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 26/232 (11%), Positives = 59/232 (25%), Gaps = 62/232 (26%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
           R+ KL+ LG    GK++++ +                                     GI
Sbjct: 1   REVKLLLLGAGESGKSTIVKQMKIIHEA----------------------------GTGI 32

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-- 129
                  +   + +  +++D  GQ   R          T  +    +++ +      +  
Sbjct: 33  ----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 88

Query: 130 ---------WIDDVRTERGSDVIIMLVGSIETNFTH--LSFHHANSFHQTSKWIDDVRTE 178
                    +      +  +D  I+L  + +  F            + + +        E
Sbjct: 89  NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTY---E 145

Query: 179 RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV 230
             +  I     +     D +               +    T A    NV+ V
Sbjct: 146 EAAAYIQCQFEDLNKRKDTK--------------EIYTHFTCATDTKNVQFV 183

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 37/142 (26%)

Query: 235 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-----------WIDDVRTER 283
           +D  GQ   R          T  +    +++ +      +           +      + 
Sbjct: 47  FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 106

Query: 284 GSDVIIMLVGNKTDLSDKRQVSTEEG------------ERKAKELNVMFI---------- 321
            +D  I+L  NK DL +++   +               E  A  +   F           
Sbjct: 107 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE 166

Query: 322 ----ETSAKAGYNVKQLFRRVA 339
                T A    NV+ +F  V 
Sbjct: 167 IYTHFTCATDTKNVQFVFDAVT 188

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 28/218 (12%), Positives = 59/218 (27%), Gaps = 32/218 (14%)

Query: 15  KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFL 74
            ++F+G    GKT L  R +   + +T                          +I     
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ------------------------TSITDSSA 37

Query: 75  SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK----W 130
              +          +     +     L+  +   +   V V D        +        
Sbjct: 38  IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQ 97

Query: 131 IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSDVIIMLVGN 190
           +        +   +++  + +      S        Q  K ++ +R  R +    +   +
Sbjct: 98  VLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQ--QLEKELNTLRVTRSAAPSTLDSSS 155

Query: 191 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 228
                  ++   +E E     L V F+E SAK G    
Sbjct: 156 TAPAQLGKKG--KEFEFSQLPLKVEFLECSAKGGRGDT 191

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 44/226 (19%)

Query: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGI 71
            +  ++  G Q+ GKTSL+T    DS   T  +                           
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE------------------------- 36

Query: 72  DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA-----VVVYDITNANSFHQ 126
                    +     + L D  G  + R  +  Y++           +V    +      
Sbjct: 37  ----PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTT 92

Query: 127 TSKWIDDVRTE----RGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDDVRTERGSD 182
           T++++ D+ +       + + I++  +    FT                I  V   R   
Sbjct: 93  TAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD--ALESEIQKVIERRKKS 150

Query: 183 VIIMLVGNKTDLSDKRQV----STEEGERKAKELNVMFIETSAKAG 224
           +  +      +   +  +    ST+  +    E +V+  E S    
Sbjct: 151 LNEVERKINEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKR 196

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.95
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.95
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.92
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.86
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.85
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.81
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.81
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.8
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.79
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.79
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.79
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.79
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.77
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.77
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.75
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.74
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.73
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.73
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.73
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.72
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.7
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.69
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.68
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.68
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.68
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.67
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.63
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.59
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.56
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.56
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.48
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.39
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.39
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.38
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.35
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.32
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.17
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.11
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.94
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.89
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.86
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.71
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.67
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.54
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.53
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.5
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.49
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.47
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.43
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.43
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.4
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.32
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.26
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.23
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.17
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.13
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.13
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.1
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.09
d1okkd2	207	GTPase domain of the signal recognition particle r	98.06
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.03
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.03
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.02
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.99
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.91
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.87
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.87
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.87
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.76
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.7
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.7
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.68
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.59
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.55
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.54
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.53
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.49
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.47
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.45
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.39
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.39
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.39
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.38
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.36
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.35
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.34
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.27
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.26
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.23
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.22
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.18
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.18
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.17
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.17
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.16
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.13
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.13
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.12
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.1
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.08
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.0
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.99
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.95
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.9
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.9
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.89
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.85
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.83
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.82
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.75
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.72
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.71
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.7
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.69
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.69
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.65
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.63
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.62
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.56
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.5
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.48
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.47
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.4
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.39
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.36
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.28
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.26
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.23
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.16
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.13
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.13
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.11
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.11
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.07
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.03
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.98
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.97
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.95
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.94
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.93
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.87
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.85
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.84
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.83
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.83
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.81
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.78
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.76
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.75
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.74
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.69
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.67
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.65
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.65
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.6
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.58
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.54
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.52
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.5
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.48
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.47
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.43
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.42
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.41
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.38
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.35
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.31
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.23
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.16
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.11
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.11
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.09
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.09
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.07
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.98
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.94
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.92
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.89
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.78
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.76
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.7
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.63
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.53
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.46
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.4
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.38
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.1
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.98
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.8
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.79
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.75
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.72
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.67
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.63
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.6
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.53
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.47
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.37
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	93.29
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.28
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.26
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	93.04
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.04
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.03
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.98
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.82
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.72
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.67
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.66
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.65
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.64
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.47
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	92.44
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	92.36
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	92.23
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	92.06
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.01
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.95
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.8
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.68
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	91.68
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.63
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.62
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.52
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	91.45
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	91.31
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	91.3
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	91.26
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	90.69
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.52
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	90.47
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	90.46
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.21
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	90.16
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.91
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.69
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	89.63
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.59
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.47
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	89.3
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	88.95
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	88.86
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.84
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	88.44
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	88.42
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	88.38
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	88.06
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.05
d1xpua3	289	Transcription termination factor Rho, ATPase domai	87.76
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	87.4
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	87.24
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	87.13
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.65
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.6
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	85.79
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.71
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	85.24
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	85.15
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	85.14
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	83.57
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	82.43
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.21
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	81.56
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	80.94
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	80.86
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	80.73

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.2e-31  Score=217.64  Aligned_cols=173  Identities=31%  Similarity=0.480  Sum_probs=141.7

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      +++.+++||+++|++|||||||++||+.+.+...+.                       ++. .++....+.+++..+.+
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~-----------------------~t~-~~~~~~~~~~~~~~~~l   56 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-----------------------PTI-EDSYTKICSVDGIPARL   56 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC-----------------------TTC-CEEEEEEEEETTEEEEE
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccc-----------------------ccc-ccceeeEeccCCeeeee
Confidence            456788999999999999999999999966655543                       332 35555677788889999


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      .+||++|++++...+..+++.+|++++|||++++.+|+.+..|+..+....                             
T Consensus        57 ~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----------------------------  107 (173)
T d2fn4a1          57 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK-----------------------------  107 (173)
T ss_dssp             EEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred             eccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHh-----------------------------
Confidence            999999999999999999999999999999999999998888877664220                             


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (173)
T d2fn4a1         108 --------------------------------------------------------------------------------  107 (173)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                                                         ...+.|+++|+||+|+...+.+...++..+++..++++++|||++
T Consensus       108 -----------------------------------~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~  152 (173)
T d2fn4a1         108 -----------------------------------DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKL  152 (173)
T ss_dssp             -----------------------------------TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             -----------------------------------ccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCC
Confidence                                               003566777777777665566777788888988999999999999


Q ss_pred             CCCHHHHHHHHHHHcCCCCCC
Q psy15725        328 GYNVKQLFRRVAAALPGMDST  348 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~~~~  348 (355)
                      |.||+++|+.|++.+.+.+++
T Consensus       153 g~gv~e~f~~l~~~i~k~~~~  173 (173)
T d2fn4a1         153 RLNVDEAFEQLVRAVRKYQEQ  173 (173)
T ss_dssp             TBSHHHHHHHHHHHHHHHTTC
T ss_pred             CcCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999776553

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=212.43  Aligned_cols=162  Identities=39%  Similarity=0.649  Sum_probs=138.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++||+.+.+..                       .+.||++.++.......++..+.+.+||+
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~-----------------------~~~~ti~~~~~~~~~~~~~~~~~~~i~d~   58 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTK-----------------------DYKKTIGVDFLERQIQVNDEDVRLMLWDT   58 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------CSSCCCSSSEEEEEEEETTEEEEEEEECC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCc-----------------------ccccccccccceeeeeecCceeeeeeecc
Confidence            4799999999999999999999955444                       44566677778888888888999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      +|++++..++..+++.+|++++|||++++.+|+++..|++++...                                   
T Consensus        59 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-----------------------------------  103 (164)
T d1z2aa1          59 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-----------------------------------  103 (164)
T ss_dssp             TTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------------------
T ss_pred             CCccchhhhhhhhhccCceEEEEEeccchhhhhhccccccccccc-----------------------------------
Confidence            999999999999999999999999999999998888887665321                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       104 --------------------------------------------------------------------------------  103 (164)
T d1z2aa1         104 --------------------------------------------------------------------------------  103 (164)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                    . .++|+++|+||+|+.+.+.+..+++..+++.+++++++|||++|.||+
T Consensus       104 ------------------------------~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~  152 (164)
T d1z2aa1         104 ------------------------------V-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVS  152 (164)
T ss_dssp             ------------------------------H-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSH
T ss_pred             ------------------------------C-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHH
Confidence                                          1 356788888888877777788888888999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q psy15725        333 QLFRRVAAALP  343 (355)
Q Consensus       333 ~l~~~l~~~i~  343 (355)
                      ++|++|++.+.
T Consensus       153 e~f~~l~~~~l  163 (164)
T d1z2aa1         153 EVFKYLAEKHL  163 (164)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998874

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.3e-30  Score=207.56  Aligned_cols=166  Identities=38%  Similarity=0.744  Sum_probs=140.9

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ++.+||+++|++|||||||++||..+.+...                       +.+|.+..+.......+.....+.+|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~i~   58 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPN-----------------------INPTIGASFMTKTVQYQNELHKFLIW   58 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTT-----------------------CCCCCSEEEEEEEEEETTEEEEEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcc-----------------------cccccccccccccccccccccceeee
Confidence            5789999999999999999999999665544                       44555667777777777888899999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++|++.+..++..+++.+|++++|||++++++|+.+..|+..+...                                 
T Consensus        59 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---------------------------------  105 (167)
T d1z0ja1          59 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH---------------------------------  105 (167)
T ss_dssp             EECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred             ecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhc---------------------------------
Confidence            99999999999999999999999999999999998887776554321                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (167)
T d1z0ja1         106 --------------------------------------------------------------------------------  105 (167)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...+.|+++|+||+|+.+.+.+...++..+++..+++|++|||++|.|
T Consensus       106 --------------------------------~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~n  153 (167)
T d1z0ja1         106 --------------------------------GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN  153 (167)
T ss_dssp             --------------------------------SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred             --------------------------------cCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCC
Confidence                                            114578888888888877778888889999999999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q psy15725        331 VKQLFRRVAAALPG  344 (355)
Q Consensus       331 v~~l~~~l~~~i~~  344 (355)
                      |+++|.+|++.||.
T Consensus       154 V~e~f~~l~~~i~~  167 (167)
T d1z0ja1         154 INELFIEISRRIPS  167 (167)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999974

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-30  Score=210.30  Aligned_cols=165  Identities=33%  Similarity=0.472  Sum_probs=138.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.+||+++|++|||||||++||+++.+.+.+                       .||++.++ ...+.+++..+.+.+|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~-----------------------~~t~~~~~-~~~~~~~~~~~~l~i~   57 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSY-----------------------DPTIENTF-TKLITVNGQEYHLQLV   57 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCC-----------------------CSSCCEEE-EEEEEETTEEEEEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCccc-----------------------Ccceeccc-ceEEecCcEEEEeeec
Confidence            46789999999999999999999996655444                       45555554 4566788899999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++|.+.+..++..+++.+|++++|||++++++|+.+..|+.++.+..                                
T Consensus        58 d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--------------------------------  105 (167)
T d1xtqa1          58 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--------------------------------  105 (167)
T ss_dssp             ECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred             ccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcc--------------------------------
Confidence            999999999999999999999999999999999999888877664210                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (167)
T d1xtqa1         106 --------------------------------------------------------------------------------  105 (167)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+...+.+..+++..+++.++++|++|||++|.|
T Consensus       106 --------------------------------~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~  153 (167)
T d1xtqa1         106 --------------------------------GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT  153 (167)
T ss_dssp             --------------------------------CSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHH
T ss_pred             --------------------------------cccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCC
Confidence                                            003578888888888877777888888899999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q psy15725        331 VKQLFRRVAAALP  343 (355)
Q Consensus       331 v~~l~~~l~~~i~  343 (355)
                      |+++|+.|++.+.
T Consensus       154 v~~~f~~li~~~~  166 (167)
T d1xtqa1         154 AVDVFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-30  Score=212.81  Aligned_cols=163  Identities=31%  Similarity=0.411  Sum_probs=124.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+++|.+..+...                        .++.+ ......+.+++..+.+.+||++
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~------------------------~~~~~-~~~~~~i~~~~~~~~l~i~D~~   56 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE------------------------AEAAG-HTYDRSIVVDGEEASLMVYDIW   56 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------------------------------C-EEEEEEEEETTEEEEEEEEECC
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc------------------------CCeee-eeecceeeccccccceeeeecc
Confidence            7999999999999999999988543222                        22223 3345567788889999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++.+..++..+++.+|++++|||++++.+|+.+..|+.++....                                   
T Consensus        57 g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~-----------------------------------  101 (168)
T d2gjsa1          57 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-----------------------------------  101 (168)
T ss_dssp             -------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----------------------------------
T ss_pred             cccccceecccchhhhhhhceeccccccccccccccccchhhccc-----------------------------------
Confidence            999999999999999999999999999999999988887764320                                   


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (168)
T d2gjsa1         102 --------------------------------------------------------------------------------  101 (168)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                                                   ...++|+++|+||+|+...+.+...++..+++.+++++++|||++|.||++
T Consensus       102 -----------------------------~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~  152 (168)
T d2gjsa1         102 -----------------------------QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQA  152 (168)
T ss_dssp             -----------------------------C--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHH
T ss_pred             -----------------------------ccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHH
Confidence                                         003567888888888876677888888889999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q psy15725        334 LFRRVAAALPGM  345 (355)
Q Consensus       334 l~~~l~~~i~~~  345 (355)
                      +|++|++.|..+
T Consensus       153 ~f~~l~~~i~~~  164 (168)
T d2gjsa1         153 LFEGVVRQIRLR  164 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=3.2e-30  Score=210.53  Aligned_cols=166  Identities=35%  Similarity=0.589  Sum_probs=136.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .|.+||+++|++|||||||++|++.+.+...|                       .||++.++ ...+.+++..+.+.+|
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~-----------------------~~T~~~~~-~~~~~~~~~~~~l~i~   57 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY-----------------------EPTKADSY-RKKVVLDGEEVQIDIL   57 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC-----------------------CTTCCEEE-EEEEEETTEEEEEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCccc-----------------------CCcccccc-cccccccccccccccc
Confidence            47789999999999999999999996655444                       45555444 4556688889999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++|++++..++..+++.+|++++|||++++++|+.+..|++++.+..                                
T Consensus        58 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~--------------------------------  105 (168)
T d1u8za_          58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK--------------------------------  105 (168)
T ss_dssp             ECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred             ccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhh--------------------------------
Confidence            999999999999999999999999999999999999888877764210                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (168)
T d1u8za_         106 --------------------------------------------------------------------------------  105 (168)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+.+.+.+..+++..+++..++++++|||++|.|
T Consensus       106 --------------------------------~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~g  153 (168)
T d1u8za_         106 --------------------------------EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN  153 (168)
T ss_dssp             --------------------------------CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             --------------------------------CCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcC
Confidence                                            013578888888888877778888888899999999999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q psy15725        331 VKQLFRRVAAALPG  344 (355)
Q Consensus       331 v~~l~~~l~~~i~~  344 (355)
                      |+++|++|++.|.+
T Consensus       154 v~e~f~~l~~~i~~  167 (168)
T d1u8za_         154 VDKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999998754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=206.75  Aligned_cols=163  Identities=95%  Similarity=1.357  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++||+++.+...                       +.++++..........++..+.+.+||++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~~   57 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNT-----------------------YQATIGIDFLSKTMYLEDRTIRLQLWDTA   57 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSS-----------------------CCCCCSEEEEEEEEECSSCEEEEEEEEEC
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCc-----------------------cccceeeeccceeeccCCCceeeeecccC
Confidence            6999999999999999999999555444                       45566777777778888889999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |++.+...+..+++.+|++++|||++++.+|+++..|+.++...                                    
T Consensus        58 g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~------------------------------------  101 (164)
T d1yzqa1          58 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE------------------------------------  101 (164)
T ss_dssp             CSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH------------------------------------
T ss_pred             CcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHh------------------------------------
Confidence            99999999999999999999999999999998888777665321                                    


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (164)
T d1yzqa1         102 --------------------------------------------------------------------------------  101 (164)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                                                   ...+.|+++|+||+|+.+.+.+..+++..+++.+++++++|||++|.||++
T Consensus       102 -----------------------------~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e  152 (164)
T d1yzqa1         102 -----------------------------RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ  152 (164)
T ss_dssp             -----------------------------HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             -----------------------------cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHH
Confidence                                         113577888888888776677777888899999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q psy15725        334 LFRRVAAALPG  344 (355)
Q Consensus       334 l~~~l~~~i~~  344 (355)
                      +|++|++++|.
T Consensus       153 ~f~~i~~~l~g  163 (164)
T d1yzqa1         153 LFRRVAAALPG  163 (164)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHhhCC
Confidence            99999999985

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.8e-30  Score=209.69  Aligned_cols=166  Identities=31%  Similarity=0.499  Sum_probs=139.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .|++||+++|++|||||||++|+.++.+.+.+.                       ||++ +........++..+.+.+|
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~-----------------------~t~~-~~~~~~~~~~~~~~~~~i~   57 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYD-----------------------PTIE-DSYLKHTEIDNQWAILDVL   57 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCC-----------------------TTCC-EEEEEEEEETTEEEEEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccC-----------------------ccee-ecccccccccccccccccc
Confidence            478999999999999999999999966555543                       4444 3334556778889999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++|++.+...+..+++++|++++|||+++++||+++..|+..+.+..                                
T Consensus        58 d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~--------------------------------  105 (169)
T d1x1ra1          58 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK--------------------------------  105 (169)
T ss_dssp             ECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--------------------------------
T ss_pred             ccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhc--------------------------------
Confidence            999999999999999999999999999999999999988877664210                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (169)
T d1x1ra1         106 --------------------------------------------------------------------------------  105 (169)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC-
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-  329 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~-  329 (355)
                                                      ...++|+++++||+|+...+.+..+++.++++.++++|++|||+++. 
T Consensus       106 --------------------------------~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~  153 (169)
T d1x1ra1         106 --------------------------------DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL  153 (169)
T ss_dssp             --------------------------------TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred             --------------------------------cccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCc
Confidence                                            00367888888999888778888899999999999999999999886 


Q ss_pred             CHHHHHHHHHHHcCC
Q psy15725        330 NVKQLFRRVAAALPG  344 (355)
Q Consensus       330 gv~~l~~~l~~~i~~  344 (355)
                      ||+++|+.|++.|.+
T Consensus       154 nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         154 NVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.5e-30  Score=208.50  Aligned_cols=165  Identities=39%  Similarity=0.696  Sum_probs=133.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||++||+.+.+.+.                       +.||.+.++.......++....+.+||
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~~~d   58 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDK-----------------------HITTLGASFLTKKLNIGGKRVNLAIWD   58 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSS-----------------------CCCCCSCEEEEEEEESSSCEEEEEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcc-----------------------cccccccchheeeeccCCccceeeeec
Confidence            468999999999999999999999555444                       455667788888888888999999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      ++|++++..++..+++++|++++|||+++++||+++..|++.+...                                  
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~----------------------------------  104 (167)
T d1z08a1          59 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKM----------------------------------  104 (167)
T ss_dssp             CCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred             cCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccc----------------------------------
Confidence            9999999999999999999999999999999998888776654321                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (167)
T d1z08a1         105 --------------------------------------------------------------------------------  104 (167)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     .....|+++++||+|+...+.+..+++..+++.+++++++|||++|.||
T Consensus       105 -------------------------------~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v  153 (167)
T d1z08a1         105 -------------------------------LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGI  153 (167)
T ss_dssp             -------------------------------HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             -------------------------------cccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCH
Confidence                                           0135677888888888777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q psy15725        332 KQLFRRVAAALPG  344 (355)
Q Consensus       332 ~~l~~~l~~~i~~  344 (355)
                      +++|++|++.+.+
T Consensus       154 ~e~F~~l~~~i~~  166 (167)
T d1z08a1         154 EELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.1e-29  Score=207.66  Aligned_cols=164  Identities=42%  Similarity=0.740  Sum_probs=137.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++||..+.+.+.                       +.++.+.+.....+......+.+.+|||
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~l~~wDt   61 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPA-----------------------FVSTVGIDFKVKTIYRNDKRIKLQIWDT   61 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------------------CCCCCSEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcc-----------------------cccccccceeeEEEEeecceEEEEEEEC
Confidence            58999999999999999999999554444                       4556677778888888888899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      ||++++..++..+++++|++|+|||+++++++..+..|+..+..                                    
T Consensus        62 ~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~------------------------------------  105 (169)
T d3raba_          62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT------------------------------------  105 (169)
T ss_dssp             CCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHH------------------------------------
T ss_pred             CCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhc------------------------------------
Confidence            99999999999999999999999999998888777666544321                                    


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (169)
T d3raba_         106 --------------------------------------------------------------------------------  105 (169)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                   ......|+++++||+|+.+.+.+..+++..+++..++++++|||++|.||+
T Consensus       106 -----------------------------~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~  156 (169)
T d3raba_         106 -----------------------------YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVK  156 (169)
T ss_dssp             -----------------------------HCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             -----------------------------ccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHH
Confidence                                         111457788888888877677788888888999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q psy15725        333 QLFRRVAAALPG  344 (355)
Q Consensus       333 ~l~~~l~~~i~~  344 (355)
                      ++|++|++.|.+
T Consensus       157 e~f~~l~~~i~e  168 (169)
T d3raba_         157 QTFERLVDVICE  168 (169)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.8e-30  Score=209.64  Aligned_cols=166  Identities=30%  Similarity=0.467  Sum_probs=137.6

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++||+++.+.+.+                       .||++..+ ......++..+.+.+||+
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~-----------------------~~T~~~~~-~~~~~~~~~~~~l~~~d~   57 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY-----------------------IPTVEDTY-RQVISCDKSICTLQITDT   57 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSC-----------------------CCCSCEEE-EEEEEETTEEEEEEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCcc-----------------------Ccceeecc-ccceeeccccceeccccc
Confidence            589999999999999999999996655544                       44555333 445567888899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      +|++.+...+..+++.+|++++|||++++++|+++..|+..+...+.                                 
T Consensus        58 ~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---------------------------------  104 (171)
T d2erxa1          58 TGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG---------------------------------  104 (171)
T ss_dssp             CSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---------------------------------
T ss_pred             cccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhc---------------------------------
Confidence            99999999999999999999999999999999999888776642100                                 


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (171)
T d2erxa1         105 --------------------------------------------------------------------------------  104 (171)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                    ...++|+++|+||+|+...+.+..+++..+++.+++++++|||++|.||+
T Consensus       105 ------------------------------~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~  154 (171)
T d2erxa1         105 ------------------------------DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVK  154 (171)
T ss_dssp             ---------------------------------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             ------------------------------cCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHH
Confidence                                          00357888888888887777888888899999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy15725        333 QLFRRVAAALPGM  345 (355)
Q Consensus       333 ~l~~~l~~~i~~~  345 (355)
                      ++|+.|++.+.++
T Consensus       155 e~f~~l~~~~~~~  167 (171)
T d2erxa1         155 ELFQELLNLEKRR  167 (171)
T ss_dssp             HHHHHHHHTCCSS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-29  Score=205.72  Aligned_cols=168  Identities=44%  Similarity=0.799  Sum_probs=141.2

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ++...+||+++|++|||||||++||+.+.+..                       .+.++.+..+...........+.+.
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~   58 (170)
T d1r2qa_           2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHE-----------------------FQESTIGAAFLTQTVCLDDTTVKFE   58 (170)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------TCCCCSSEEEEEEEEEETTEEEEEE
T ss_pred             CceeEEEEEEECCCCcCHHHHHHHHHhCCCCc-----------------------ccccccccccccceeeccceEEEEE
Confidence            56678999999999999999999999955444                       4455667777777888888899999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      +||++|++.+..++..+++.+|++++|||.+++++|+++..|...+.+.                               
T Consensus        59 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-------------------------------  107 (170)
T d1r2qa_          59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQ-------------------------------  107 (170)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred             eccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhc-------------------------------
Confidence            9999999999999999999999999999999998888877776554321                               


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (170)
T d1r2qa_         108 --------------------------------------------------------------------------------  107 (170)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAG  328 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~  328 (355)
                                                        ...+.|+++|+||+|+...+.+..+++..+++..++++++|||++|
T Consensus       108 ----------------------------------~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g  153 (170)
T d1r2qa_         108 ----------------------------------ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTS  153 (170)
T ss_dssp             ----------------------------------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             ----------------------------------cCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCC
Confidence                                              1145677777777777667778888888889888999999999999


Q ss_pred             CCHHHHHHHHHHHcCC
Q psy15725        329 YNVKQLFRRVAAALPG  344 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~  344 (355)
                      .||+++|++|++.|++
T Consensus       154 ~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         154 MNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999998875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.6e-30  Score=208.93  Aligned_cols=164  Identities=41%  Similarity=0.703  Sum_probs=136.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||+++|..+.+..                       .+.++.+.++....+.+++..+.+.+|||
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt   61 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-----------------------GQGATIGVDFMIKTVEINGEKVKLQIWDT   61 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCT-----------------------TCCCCCSEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCC-----------------------cccccccceEEEEEEEECCEEEEEEEEEC
Confidence            4899999999999999999999955444                       44556677788888888999999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      ||++.|..+++.+++++|++++|||++++.+|+.+..|+..+.+.                                   
T Consensus        62 ~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-----------------------------------  106 (171)
T d2ew1a1          62 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-----------------------------------  106 (171)
T ss_dssp             CCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------------------
T ss_pred             CCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhccc-----------------------------------
Confidence            999999999999999999999999999988888877776554321                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (171)
T d2ew1a1         107 --------------------------------------------------------------------------------  106 (171)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                    ...+.|+++|+||+|+...+.+..+++..+++..++++++|||++|.||+
T Consensus       107 ------------------------------~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~  156 (171)
T d2ew1a1         107 ------------------------------ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE  156 (171)
T ss_dssp             ------------------------------SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             ------------------------------ccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHH
Confidence                                          11356777777777776666777778888888889999999999999999


Q ss_pred             HHHHHHHHHcCC
Q psy15725        333 QLFRRVAAALPG  344 (355)
Q Consensus       333 ~l~~~l~~~i~~  344 (355)
                      ++|.+|++.+..
T Consensus       157 e~f~~l~~~l~~  168 (171)
T d2ew1a1         157 KLFLDLACRLIS  168 (171)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-30  Score=209.19  Aligned_cols=100  Identities=29%  Similarity=0.670  Sum_probs=86.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++||+.+.+                       ...+.||++.++....+..++..+.+.+||+
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f-----------------------~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~   59 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEF-----------------------EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT   59 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC----------------------------CCEEEETTEEEEEEEECBTTCCEEEEEEEC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCC-----------------------Ccccccceecccccccccccccccccccccc
Confidence            58999999999999999999999554                       4445567788888888888899999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +|+..+..++..+++.+|++++|||+++++||+++..|+..+.
T Consensus        60 ~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~  102 (170)
T d1i2ma_          60 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV  102 (170)
T ss_dssp             TTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHH
T ss_pred             ccccccceecchhcccccchhhccccccccccchhHHHHHHHh
Confidence            9999999999999999999999999999999999888877654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.2e-29  Score=207.08  Aligned_cols=178  Identities=26%  Similarity=0.476  Sum_probs=139.5

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      +....+||+++|++|||||||++||+.+.+...+.|                       |++ ++.......++..+.+.
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~-----------------------Ti~-~~~~~~~~~~~~~~~l~   60 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVP-----------------------TVF-DHYAVSVTVGGKQYLLG   60 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCC-----------------------SSC-CCEEEEEESSSCEEEEE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCC-----------------------cee-eeeeEEEeeCCceEEee
Confidence            466789999999999999999999999666555444                       444 34455566777889999


Q ss_pred             EEecCCcccccccccccccCccEEEEEEECCCcchhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         89 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        89 i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      +||++|++.|..++..+++++|++++|||+++++||+++.. |...++..                              
T Consensus        61 i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~------------------------------  110 (185)
T d2atxa1          61 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY------------------------------  110 (185)
T ss_dssp             EECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH------------------------------
T ss_pred             cccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc------------------------------
Confidence            99999999999999999999999999999999999988755 55544432                              


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccc
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLI  247 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~  247 (355)
                                  ..++|+++|+||+|+.+...                                                
T Consensus       111 ------------~~~~~~ilvgnK~Dl~~~~~------------------------------------------------  130 (185)
T d2atxa1         111 ------------APNVPFLLIGTQIDLRDDPK------------------------------------------------  130 (185)
T ss_dssp             ------------STTCCEEEEEECTTSTTCHH------------------------------------------------
T ss_pred             ------------CCCCCeeEeeeccccccchh------------------------------------------------
Confidence                        24789999999999854110                                                


Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAK  326 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~  326 (355)
                                                 ....+.                | ...+.+..+++.++++..+ ++|++|||+
T Consensus       131 ---------------------------~~~~~~----------------~-~~~r~v~~~~~~~~a~~~~~~~~~E~SAk  166 (185)
T d2atxa1         131 ---------------------------TLARLN----------------D-MKEKPICVEQGQKLAKEIGACCYVECSAL  166 (185)
T ss_dssp             ---------------------------HHHHHT----------------T-TTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             ---------------------------hhhhhh----------------h-cccccccHHHHHHHHHHcCCCEEEEecCC
Confidence                                       000000                1 1245678888888988877 699999999


Q ss_pred             CCCCHHHHHHHHHHHcCC
Q psy15725        327 AGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~  344 (355)
                      +|.||+++|+.+++.|..
T Consensus       167 ~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         167 TQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHcC
Confidence            999999999999998754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.3e-29  Score=203.41  Aligned_cols=162  Identities=38%  Similarity=0.699  Sum_probs=136.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      -+||+++|++|||||||++||+++.+...                       +.++.+.++.......++..+.+.+||+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~l~i~D~   60 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD-----------------------CPHTIGVEFGTRIIEVSGQKIKLQIWDT   60 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------------------CTTSCCCCEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc-----------------------ccccccccceeEEEEECCEEEEEEEecc
Confidence            48999999999999999999999655444                       4455566777788888899999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      +|++.+..++..+++.+|++++|||++++++|+.+..|+..+.+.                                   
T Consensus        61 ~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~-----------------------------------  105 (166)
T d1z0fa1          61 AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL-----------------------------------  105 (166)
T ss_dssp             TTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------------------
T ss_pred             CCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhh-----------------------------------
Confidence            999999999999999999999999999998888887776655321                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (166)
T d1z0fa1         106 --------------------------------------------------------------------------------  105 (166)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                    .....|+++++||+|+.....+..+++..+++..++++++|||++|.||+
T Consensus       106 ------------------------------~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~  155 (166)
T d1z0fa1         106 ------------------------------TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE  155 (166)
T ss_dssp             ------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             ------------------------------ccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence                                          11356788888888887777777788889999999999999999999999


Q ss_pred             HHHHHHHHHc
Q psy15725        333 QLFRRVAAAL  342 (355)
Q Consensus       333 ~l~~~l~~~i  342 (355)
                      ++|++|++.|
T Consensus       156 e~f~~i~~~i  165 (166)
T d1z0fa1         156 DAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-29  Score=204.45  Aligned_cols=166  Identities=32%  Similarity=0.554  Sum_probs=133.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ++.+||++||++|||||||++||..+.+.+.+.                       |+++..+ ...+..++..+.+.+|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~-----------------------~t~~~~~-~~~~~~~~~~~~~~~~   56 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYD-----------------------PTIEDSY-RKQVEVDCQQCMLEIL   56 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCC-----------------------CCSEEEE-EEEEESSSCEEEEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccC-----------------------Ccccccc-ceeEEeeeeEEEeccc
Confidence            367999999999999999999999966655544                       4445333 4455677888999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++|++.+...++.+++.+|++++|||++++++|+++..|+..+....                                
T Consensus        57 d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~--------------------------------  104 (167)
T d1c1ya_          57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK--------------------------------  104 (167)
T ss_dssp             EECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--------------------------------
T ss_pred             cccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhc--------------------------------
Confidence            999999999999999999999999999999999999988877653210                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (167)
T d1c1ya_         105 --------------------------------------------------------------------------------  104 (167)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh-cCcEEEEecCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-LNVMFIETSAKAGY  329 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~SA~~~~  329 (355)
                                                      ...++|+++|+||+|+...+.+..+++..+++. .++++++|||++|.
T Consensus       105 --------------------------------~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  152 (167)
T d1c1ya_         105 --------------------------------DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKI  152 (167)
T ss_dssp             --------------------------------CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTB
T ss_pred             --------------------------------CCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCc
Confidence                                            013567777777777766666677777777766 46899999999999


Q ss_pred             CHHHHHHHHHHHcCC
Q psy15725        330 NVKQLFRRVAAALPG  344 (355)
Q Consensus       330 gv~~l~~~l~~~i~~  344 (355)
                      ||+++|++|++.|.+
T Consensus       153 gv~e~F~~l~~~i~k  167 (167)
T d1c1ya_         153 NVNEIFYDLVRQINR  167 (167)
T ss_dssp             SHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999998864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-29  Score=205.28  Aligned_cols=165  Identities=34%  Similarity=0.593  Sum_probs=135.0

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      .++||+++|++|||||||++|++.+.+...+                       .||.+ +.....+.+++..+.+.+||
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~~~~~d   59 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDY-----------------------DPTIE-DSYTKQCVIDDRAARLDILD   59 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSC-----------------------CTTCC-EEEEEEEEETTEEEEEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCccc-----------------------Ccccc-cceeeeeeeccccccccccc
Confidence            4599999999999999999999996655544                       34434 45566777888899999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      ++|..++...+..+++.+|++++|||++++++|+.+..|+.++...                                  
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~----------------------------------  105 (171)
T d2erya1          60 TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRV----------------------------------  105 (171)
T ss_dssp             CC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH----------------------------------
T ss_pred             ccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhh----------------------------------
Confidence            9999999999999999999999999999999999888887665321                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       106 --------------------------------------------------------------------------------  105 (171)
T d2erya1         106 --------------------------------------------------------------------------------  105 (171)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                    ......|+++|+||+|+...+.+..+++.++++..+++|++|||++|.||
T Consensus       106 ------------------------------~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i  155 (171)
T d2erya1         106 ------------------------------KDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNV  155 (171)
T ss_dssp             ------------------------------HTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred             ------------------------------cccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCH
Confidence                                          00146788888888888777788888999999999999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q psy15725        332 KQLFRRVAAALPG  344 (355)
Q Consensus       332 ~~l~~~l~~~i~~  344 (355)
                      +++|+.|++.|.+
T Consensus       156 ~e~f~~l~~~i~k  168 (171)
T d2erya1         156 DQAFHELVRVIRK  168 (171)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999854

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-29  Score=205.16  Aligned_cols=164  Identities=35%  Similarity=0.585  Sum_probs=135.0

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ++.+||+++|++|||||||++||+++.+...+                       .++++ ++.......++..+.+.+|
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~l~~~   56 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKY-----------------------DPTIE-DFYRKEIEVDSSPSVLEIL   56 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------------------CTTCC-EEEEEEEEETTEEEEEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCcc-----------------------CCcee-eeeeeeeecCcceEeeccc
Confidence            36799999999999999999999996655554                       34444 4556667778888999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++|++.+...+..+++++|++++|||++++.+|.++..|+..+....                                
T Consensus        57 d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--------------------------------  104 (167)
T d1kaoa_          57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK--------------------------------  104 (167)
T ss_dssp             ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT--------------------------------
T ss_pred             cCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhc--------------------------------
Confidence            999999999999999999999999999999999988888876654210                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (167)
T d1kaoa_         105 --------------------------------------------------------------------------------  104 (167)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+.+.+.+...++..+++..++++++|||++|.|
T Consensus       105 --------------------------------~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~  152 (167)
T d1kaoa_         105 --------------------------------RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM  152 (167)
T ss_dssp             --------------------------------TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHH
T ss_pred             --------------------------------cCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcC
Confidence                                            013567777777777766667777788888888899999999999999


Q ss_pred             HHHHHHHHHHHc
Q psy15725        331 VKQLFRRVAAAL  342 (355)
Q Consensus       331 v~~l~~~l~~~i  342 (355)
                      |+++|++|++.|
T Consensus       153 i~e~f~~i~~~i  164 (167)
T d1kaoa_         153 VDELFAEIVRQM  164 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999876

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-28  Score=203.15  Aligned_cols=182  Identities=25%  Similarity=0.420  Sum_probs=142.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +++||+++|++|||||||++||..+.+.+.+                       .||++ .........++....+.+||
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~l~i~D   57 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEY-----------------------VPTVF-DNYAVTVMIGGEPYTLGLFD   57 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----------------------CCCSE-EEEEEEEEETTEEEEEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCc-----------------------CCcee-eecceeEeeCCceeeeeccc
Confidence            5799999999999999999999996655554                       44555 44455566778888999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHH-HHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW-IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      ++|+++|...+..+++.+|++++|||+++++||+++..| ...+...                                 
T Consensus        58 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~---------------------------------  104 (191)
T d2ngra_          58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH---------------------------------  104 (191)
T ss_dssp             ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH---------------------------------
T ss_pred             cccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhc---------------------------------
Confidence            999999999999999999999999999999999999764 4444322                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                               ..++|+++|+||+|+.+...                                                   
T Consensus       105 ---------~~~~~i~lvgnK~Dl~~~~~---------------------------------------------------  124 (191)
T d2ngra_         105 ---------CPKTPFLLVGTQIDLRDDPS---------------------------------------------------  124 (191)
T ss_dssp             ---------CTTCCEEEEEECGGGGGCHH---------------------------------------------------
T ss_pred             ---------CCCCceEEEeccccccccch---------------------------------------------------
Confidence                     24799999999999743110                                                   


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGY  329 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~  329 (355)
                                              ..+.+.                 ....+.+..+++..+++..+ ++|++|||++|.
T Consensus       125 ------------------------~~~~~~-----------------~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  163 (191)
T d2ngra_         125 ------------------------TIEKLA-----------------KNKQKPITPETAEKLARDLKAVKYVECSALTQK  163 (191)
T ss_dssp             ------------------------HHHHHH-----------------TTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCT
T ss_pred             ------------------------hhhhhh-----------------hcccccccHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence                                    000111                 11245678888888988865 699999999999


Q ss_pred             CHHHHHHHHHHHcCCCCCCCCC
Q psy15725        330 NVKQLFRRVAAALPGMDSTENK  351 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~~~~~~  351 (355)
                      ||+++|+.+++.+....+.+++
T Consensus       164 ~V~e~f~~l~~~~~~~~~~k~~  185 (191)
T d2ngra_         164 GLKNVFDEAILAALEPPEPKKS  185 (191)
T ss_dssp             THHHHHHHHHHHHTSCCSTTCC
T ss_pred             CHHHHHHHHHHHHhcCcCCCCC
Confidence            9999999999998887665544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-28  Score=200.65  Aligned_cols=173  Identities=28%  Similarity=0.449  Sum_probs=135.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      +.||+|+|++|||||||++||..+.+++.+                       .||++ +........+++.+.+.+||+
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~-----------------------~~t~~-~~~~~~~~~~~~~~~l~i~D~   57 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVY-----------------------VPTVF-ENYVADIEVDGKQVELALWDT   57 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----------------------CCCSE-EEEEEEEEETTEEEEEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCc-----------------------CCcee-eeccccccccccceeeecccc
Confidence            589999999999999999999996655554                       44444 445566677888899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHH-HHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW-IDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +|++.|...+..+++++|++++|||+++++||+++..| ...+...                                  
T Consensus        58 ~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~----------------------------------  103 (177)
T d1kmqa_          58 AGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----------------------------------  103 (177)
T ss_dssp             CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----------------------------------
T ss_pred             CccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh----------------------------------
Confidence            99999999999999999999999999999999987664 4444322                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                              ..++|++|||||+|+...+..                                                   
T Consensus       104 --------~~~~piilvgnK~Dl~~~~~~---------------------------------------------------  124 (177)
T d1kmqa_         104 --------CPNVPIILVGNKKDLRNDEHT---------------------------------------------------  124 (177)
T ss_dssp             --------STTSCEEEEEECGGGTTCHHH---------------------------------------------------
T ss_pred             --------CCCCceEEeeecccccchhhH---------------------------------------------------
Confidence                    237899999999997432110                                                   


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYN  330 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~g  330 (355)
                                              ...+...                 ..+.+..+++..+++..+ .+|++|||++|.|
T Consensus       125 ------------------------~~~~~~~-----------------~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~g  163 (177)
T d1kmqa_         125 ------------------------RRELAKM-----------------KQEPVKPEEGRDMANRIGAFGYMECSAKTKDG  163 (177)
T ss_dssp             ------------------------HHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTT
T ss_pred             ------------------------HHHHHHh-----------------hcccccHHHHHHHHHHcCCcEEEEecCCCCcC
Confidence                                    0011110                 124566778888888888 4999999999999


Q ss_pred             HHHHHHHHHHHcC
Q psy15725        331 VKQLFRRVAAALP  343 (355)
Q Consensus       331 v~~l~~~l~~~i~  343 (355)
                      |+++|+.+++.+.
T Consensus       164 i~e~F~~i~~~~l  176 (177)
T d1kmqa_         164 VREVFEMATRAAL  176 (177)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998865

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-29  Score=203.47  Aligned_cols=164  Identities=34%  Similarity=0.501  Sum_probs=131.4

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++||..+.|.+.                       +.||++.++.. ....++..+.+.+||+
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~-----------------------~~pTi~~~~~~-~~~~~~~~~~l~i~D~   57 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWE-----------------------YDPTLESTYRH-QATIDDEVVSMEILDT   57 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSC-----------------------CCTTCCEEEEE-EEEETTEEEEEEEEEC
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCc-----------------------cCCceeccccc-cccccccceEEEEeec
Confidence            58999999999999999999999555444                       45566655543 3456788899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      +|++.+. .+..+++.+|++++|||++++++|..+..|+..+...                                   
T Consensus        58 ~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-----------------------------------  101 (168)
T d2atva1          58 AGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI-----------------------------------  101 (168)
T ss_dssp             CCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------------------
T ss_pred             ccccccc-cchhhhcccccceeecccCCccchhhhhhhccccccc-----------------------------------
Confidence            9998764 4566788899999999999988888887765443211                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (168)
T d2atva1         102 --------------------------------------------------------------------------------  101 (168)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC-CH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NV  331 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~-gv  331 (355)
                                                   ....+.|+++|+||+|+...+.+..+++..+++.++++|++|||++|. ||
T Consensus       102 -----------------------------~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV  152 (168)
T d2atva1         102 -----------------------------KKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI  152 (168)
T ss_dssp             -----------------------------HTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred             -----------------------------ccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCH
Confidence                                         011467888999999987777888999999999999999999999998 59


Q ss_pred             HHHHHHHHHHcCCC
Q psy15725        332 KQLFRRVAAALPGM  345 (355)
Q Consensus       332 ~~l~~~l~~~i~~~  345 (355)
                      +++|..|++.|.++
T Consensus       153 ~e~F~~l~~~i~~~  166 (168)
T d2atva1         153 TEIFYELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.6e-29  Score=205.24  Aligned_cols=165  Identities=44%  Similarity=0.765  Sum_probs=111.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      -+||+++|++|||||||+++|+++.                       +...+.+|++.++....+..++..+.+.+||+
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~-----------------------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~   62 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDA-----------------------FNSTFISTIGIDFKIRTIELDGKRIKLQIWDT   62 (173)
T ss_dssp             EEEEEEECCCCC---------------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCC-----------------------CCCccCccccceEEEEEEEECCEEEEEEEEEC
Confidence            4899999999999999999999844                       44455677788888888889999999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      ||++.|..++..+++++|++|+|||++++.+|+.+..|+..+...                                   
T Consensus        63 ~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----------------------------------  107 (173)
T d2fu5c1          63 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-----------------------------------  107 (173)
T ss_dssp             ---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred             CCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhh-----------------------------------
Confidence            999999999999999999999999999988888877776555321                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (173)
T d2fu5c1         108 --------------------------------------------------------------------------------  107 (173)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                    ...+.|+++|+||.|+...+....+++..+++..++++++|||++|.||+
T Consensus       108 ------------------------------~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~  157 (173)
T d2fu5c1         108 ------------------------------ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE  157 (173)
T ss_dssp             ------------------------------SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHH
T ss_pred             ------------------------------ccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHH
Confidence                                          11457777888888877666676777778888889999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy15725        333 QLFRRVAAALPGM  345 (355)
Q Consensus       333 ~l~~~l~~~i~~~  345 (355)
                      ++|++|++.|.++
T Consensus       158 e~f~~l~~~i~~k  170 (173)
T d2fu5c1         158 NAFFTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-28  Score=199.70  Aligned_cols=100  Identities=43%  Similarity=0.859  Sum_probs=88.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ++||+++|++|||||||++|++++.+..                       .+.||.+.++....+..++..+.+.+||+
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~-----------------------~~~~t~~~~~~~~~i~~~~~~~~l~i~d~   59 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAE-----------------------NKEPTIGAAFLTQRVTINEHTVKFEIWDT   59 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------TCCCCSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCc-----------------------cccccccceeecccccccccccccccccc
Confidence            6899999999999999999999955444                       44566677888888888899999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +|++.+..+++.+++.+|++++|||++++.+|+++..|+.++.
T Consensus        60 ~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~  102 (170)
T d1ek0a_          60 AGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELH  102 (170)
T ss_dssp             CCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhc
Confidence            9999999999999999999999999999999999888876653

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-28  Score=201.39  Aligned_cols=167  Identities=39%  Similarity=0.708  Sum_probs=132.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+|+|++|||||||++|++++.+...+.                       ++.............+....+.+||
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~i~d   58 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----------------------LTIGVEFGARMVNIDGKQIKLQIWD   58 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------CCSSEEEEEEEETTEEEEEEEEC
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcc-----------------------cceeeccceeeeeeeeeEEEEEeec
Confidence            35899999999999999999999966555443                       3444555566666777889999999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      ++|++.+..+++.+++.+|++++|||++++.+|+.+..|+..+...                                  
T Consensus        59 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~----------------------------------  104 (173)
T d2a5ja1          59 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----------------------------------  104 (173)
T ss_dssp             CTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----------------------------------
T ss_pred             ccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHh----------------------------------
Confidence            9999999999999999999999999999998888887776655322                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (173)
T d2a5ja1         105 --------------------------------------------------------------------------------  104 (173)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                                                     ...++|+++|+||+|+...+.+..+++..+++..++++++|||++|.||
T Consensus       105 -------------------------------~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V  153 (173)
T d2a5ja1         105 -------------------------------SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV  153 (173)
T ss_dssp             -------------------------------SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred             -------------------------------CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence                                           1145677777777776656666777888888888999999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q psy15725        332 KQLFRRVAAALPGMD  346 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~  346 (355)
                      +++|.+|++.|.++.
T Consensus       154 ~e~f~~i~~~i~~~~  168 (173)
T d2a5ja1         154 EEAFINTAKEIYRKI  168 (173)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-28  Score=199.92  Aligned_cols=101  Identities=35%  Similarity=0.814  Sum_probs=84.8

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+|+|++|||||||++|++++.+...                       +.++.+.......+..++..+.+.+||+
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~d~   60 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------SKSTIGVEFATRSIQVDGKTIKAQIWDT   60 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------CCCSCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc-----------------------ccccccceeeeEEEEECCEEEEEEeccc
Confidence            58999999999999999999999555444                       4445566666777788888999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      +|+++|...+..+++.+|++++|||++++++|..+..|+..+..
T Consensus        61 ~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~  104 (175)
T d2f9la1          61 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD  104 (175)
T ss_dssp             SSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHH
Confidence            99999999999999999999999999999999888888776643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-28  Score=198.71  Aligned_cols=165  Identities=29%  Similarity=0.530  Sum_probs=132.6

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ++.+||+++|++|||||||++||+++.++..+.                       ++++..+. ..+...+..+.+.+|
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~-----------------------~~~~~~~~-~~~~~~~~~~~l~~~   56 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-----------------------PTIEDSYR-KQVVIDGETCLLDIL   56 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCC-----------------------CCSEEEEE-EEEEETTEEEEEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccC-----------------------Cccceeec-cceeeeceeeeeeee
Confidence            367999999999999999999999966555544                       44454433 335567778999999


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |++|++.+...++.+++.++++++|||++++.+|+.+..|+..+....                                
T Consensus        57 d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~--------------------------------  104 (166)
T d1ctqa_          57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK--------------------------------  104 (166)
T ss_dssp             EECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH--------------------------------
T ss_pred             eccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhc--------------------------------
Confidence            999999999999889999999999999999888888888877664320                                


Q ss_pred             ccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSY  250 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~  250 (355)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (166)
T d1ctqa_         105 --------------------------------------------------------------------------------  104 (166)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                                                      ...++|+++|+||+|+. .+.+..+++..+++..++++++|||++|.|
T Consensus       105 --------------------------------~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~g  151 (166)
T d1ctqa_         105 --------------------------------DSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQG  151 (166)
T ss_dssp             --------------------------------TCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred             --------------------------------CCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcC
Confidence                                            01457778888888874 455667778888888899999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q psy15725        331 VKQLFRRVAAALPG  344 (355)
Q Consensus       331 v~~l~~~l~~~i~~  344 (355)
                      |+++|++|++.|.+
T Consensus       152 i~e~f~~i~~~i~~  165 (166)
T d1ctqa_         152 VEDAFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4e-28  Score=199.12  Aligned_cols=165  Identities=39%  Similarity=0.679  Sum_probs=133.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++||..+.+.+.+                       .++.+.......+..++....+.+||+
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~-----------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~   61 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDS-----------------------NHTIGVEFGSKIINVGGKYVKLQIWDT   61 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTC-----------------------CCCSEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccc-----------------------ccccccceeeEEEEecCcceeEEEEEC
Confidence            489999999999999999999996655554                       445566666777777888899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      ||++++..++..+++.+|++++|||.+++++|..+..|+..+...                                   
T Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----------------------------------  106 (174)
T d2bmea1          62 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARML-----------------------------------  106 (174)
T ss_dssp             CCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------------------
T ss_pred             CCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccc-----------------------------------
Confidence            999999999999999999999999999988888777766554321                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (174)
T d2bmea1         107 --------------------------------------------------------------------------------  106 (174)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                    ...++|+++|+||+|+.....+....+..+++..++++++|||++|.||+
T Consensus       107 ------------------------------~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~  156 (174)
T d2bmea1         107 ------------------------------ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE  156 (174)
T ss_dssp             ------------------------------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred             ------------------------------cCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence                                          11356777777777766566666777778888889999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy15725        333 QLFRRVAAALPGM  345 (355)
Q Consensus       333 ~l~~~l~~~i~~~  345 (355)
                      ++|++|.+.+.++
T Consensus       157 e~f~~l~~~i~~~  169 (174)
T d2bmea1         157 EAFVQCARKILNK  169 (174)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.6e-28  Score=199.45  Aligned_cols=178  Identities=29%  Similarity=0.508  Sum_probs=138.9

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      .++.+||+|+|++|||||||++||+.+.+.+.+.                       ||++ +.....+..+++...+.+
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~-----------------------~ti~-~~~~~~~~~~~~~~~~~~   57 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-----------------------PTVF-DNYSANVMVDGKPVNLGL   57 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC-----------------------CCSC-CEEEEEEEETTEEEEEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccc-----------------------ccee-eceeeeeeccCcceEEEe
Confidence            3578999999999999999999999966555544                       4444 445566777888999999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHH-HHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      ||++|++.+..++..+++.+|++++|||++++++|+++.. |...++..                               
T Consensus        58 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-------------------------------  106 (183)
T d1mh1a_          58 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-------------------------------  106 (183)
T ss_dssp             ECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-------------------------------
T ss_pred             ecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-------------------------------
Confidence            9999999999999999999999999999999999999876 55554432                               


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIP  248 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~  248 (355)
                                 ..++|+++|+||+|+...+.+                                                
T Consensus       107 -----------~~~~piilvgnK~Dl~~~~~~------------------------------------------------  127 (183)
T d1mh1a_         107 -----------CPNTPIILVGTKLDLRDDKDT------------------------------------------------  127 (183)
T ss_dssp             -----------STTSCEEEEEECHHHHTCHHH------------------------------------------------
T ss_pred             -----------CCCCcEEEEeecccchhhhhh------------------------------------------------
Confidence                       237899999999997432210                                                


Q ss_pred             ccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCC
Q psy15725        249 SYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKA  327 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~  327 (355)
                                                 .......                 ..+.+...++..+++..+ ++|++|||++
T Consensus       128 ---------------------------~~~~~~~-----------------~~~~~~~~~~~~~a~~~~~~~~~E~SAk~  163 (183)
T d1mh1a_         128 ---------------------------IEKLKEK-----------------KLTPITYPQGLAMAKEIGAVKYLECSALT  163 (183)
T ss_dssp             ---------------------------HHHHHHT-----------------TCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             ---------------------------hhhhhhc-----------------cccchhhHHHHHHHHHcCCceEEEcCCCC
Confidence                                       0111110                 123455667778888777 6999999999


Q ss_pred             CCCHHHHHHHHHHHcCCC
Q psy15725        328 GYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~~~  345 (355)
                      |.||+++|+.|++.+..+
T Consensus       164 ~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         164 QRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             CTTHHHHHHHHHHHHSCC
T ss_pred             CcCHHHHHHHHHHHHcCC
Confidence            999999999999988754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.9e-28  Score=201.62  Aligned_cols=165  Identities=42%  Similarity=0.693  Sum_probs=137.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      -+||+|+|++|||||||+++|+.+.+                       ...+.+|.+..+....+.+++..+.+.+|||
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~-----------------------~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt   62 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTY-----------------------TNDYISTIGVDFKIKTVELDGKTVKLQIWDT   62 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCC-----------------------CTTCCCSSCCCEEEEEEEETTEEEEEEEECC
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCC-----------------------CCCcCCccceeEEEEEEEEeeEEEEEEEEEC
Confidence            48999999999999999999999544                       4445566677777778888899999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      ||+++|..++..+++.+|++|+|||++++++|..+..|+..+..                                    
T Consensus        63 ~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~------------------------------------  106 (194)
T d2bcgy1          63 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR------------------------------------  106 (194)
T ss_dssp             TTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH------------------------------------
T ss_pred             CCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhh------------------------------------
Confidence            99999999999999999999999999998888877766555432                                    


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (194)
T d2bcgy1         107 --------------------------------------------------------------------------------  106 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                   ....+.|+++|+||+|+.+...+..++...+++..++++++|||++|.||+
T Consensus       107 -----------------------------~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~  157 (194)
T d2bcgy1         107 -----------------------------YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE  157 (194)
T ss_dssp             -----------------------------HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred             -----------------------------cccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHH
Confidence                                         111456888888888887777777888888888888999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy15725        333 QLFRRVAAALPGM  345 (355)
Q Consensus       333 ~l~~~l~~~i~~~  345 (355)
                      ++|++|++.+.+.
T Consensus       158 e~f~~l~~~i~~~  170 (194)
T d2bcgy1         158 DAFLTMARQIKES  170 (194)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-27  Score=195.41  Aligned_cols=165  Identities=42%  Similarity=0.734  Sum_probs=129.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++|++.+.+...                      ...++++.++....+..++..+.+.+|||
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt   63 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAG----------------------TFISTVGIDFRNKVLDVDGVKVKLQMWDT   63 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCC----------------------CCCCCCSCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcc----------------------cccceeeeeeEEEEEEecCcEEEEEEEEC
Confidence            58999999999999999999999654332                      22345567777778888898999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      ||++.+..++..+++.+|++++|||++++.+|..+..|...+..                                    
T Consensus        64 ~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~------------------------------------  107 (170)
T d2g6ba1          64 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE------------------------------------  107 (170)
T ss_dssp             CCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHH------------------------------------
T ss_pred             CCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhh------------------------------------
Confidence            99999999999999999999999999998888877666544322                                    


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (170)
T d2g6ba1         108 --------------------------------------------------------------------------------  107 (170)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                   ......|+++|+||+|+.....+..+++..+++..++++++|||++|.||+
T Consensus       108 -----------------------------~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~  158 (170)
T d2g6ba1         108 -----------------------------YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD  158 (170)
T ss_dssp             -----------------------------HSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             -----------------------------ccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence                                         111456788888888887777888888888999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q psy15725        333 QLFRRVAAALPG  344 (355)
Q Consensus       333 ~l~~~l~~~i~~  344 (355)
                      ++|++|++.|.+
T Consensus       159 e~f~~l~~~i~k  170 (170)
T d2g6ba1         159 LAFTAIAKELKR  170 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCC
Confidence            999999998753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.9e-29  Score=205.63  Aligned_cols=166  Identities=34%  Similarity=0.613  Sum_probs=134.8

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeec----------C
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE----------D   82 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------~   82 (355)
                      .+||+++|++|||||||++||+++.+.+.+.++.                       +.++....+.++          .
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~~~~~~~~   61 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV-----------------------GIDFREKRVVYNAQGPNGSSGKA   61 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEE-----------------------EEEEEEEEEEEEC-------CCE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcc-----------------------cceeeEEEEEEeccccccccccc
Confidence            4899999999999999999999977766655543                       333333333222          2


Q ss_pred             cEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccccc
Q psy15725         83 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHA  162 (355)
Q Consensus        83 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
                      ....+.+|||+|+++|..++..+++++|++|+|||++++.+|+.+..|+.++....                        
T Consensus        62 ~~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------  117 (186)
T d2f7sa1          62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA------------------------  117 (186)
T ss_dssp             EEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC------------------------
T ss_pred             ceEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhc------------------------
Confidence            35789999999999999999999999999999999999999999988876542110                        


Q ss_pred             CccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccc
Q psy15725        163 NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQER  242 (355)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~  242 (355)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (186)
T d2f7sa1         118 --------------------------------------------------------------------------------  117 (186)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEE
Q psy15725        243 FRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE  322 (355)
Q Consensus       243 ~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~  322 (355)
                                                              ...+.|+++|+||.|+...+.+..+++..+++.+++++++
T Consensus       118 ----------------------------------------~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e  157 (186)
T d2f7sa1         118 ----------------------------------------YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFE  157 (186)
T ss_dssp             ----------------------------------------TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred             ----------------------------------------cCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEE
Confidence                                                    0045788888888888777788888999999999999999


Q ss_pred             ecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        323 TSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       323 ~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      |||++|.||+++|++|++.|.++
T Consensus       158 ~Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         158 TSAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=196.31  Aligned_cols=169  Identities=39%  Similarity=0.688  Sum_probs=141.2

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      .++++||+|+|++|||||||++||.++.+...                       +.++.+..+....+.+++....+.+
T Consensus         4 ~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~i   60 (177)
T d1x3sa1           4 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPE-----------------------LAATIGVDFKVKTISVDGNKAKLAI   60 (177)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTT-----------------------CCCCCSEEEEEEEEEETTEEEEEEE
T ss_pred             ccceeEEEEECCCCcCHHHHHHHHHhCCCCCc-----------------------cccceeecceeEEEEEeccccEEEE
Confidence            46789999999999999999999999655444                       4445566667777788888999999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      |||||++++..++..+++.+|++++|||++++.+|+.+..|+.++....                               
T Consensus        61 ~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~-------------------------------  109 (177)
T d1x3sa1          61 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC-------------------------------  109 (177)
T ss_dssp             EEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCC-------------------------------
T ss_pred             EECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccc-------------------------------
Confidence            9999999999999999999999999999999999998888877663210                               


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (177)
T d1x3sa1         110 --------------------------------------------------------------------------------  109 (177)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                       .....|+++++||.|.. .+.+...++..+++..++++++|||++|.
T Consensus       110 ---------------------------------~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~  155 (177)
T d1x3sa1         110 ---------------------------------TRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCD  155 (177)
T ss_dssp             ---------------------------------SCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred             ---------------------------------cccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCC
Confidence                                             00357788888888863 56677888889999999999999999999


Q ss_pred             CHHHHHHHHHHHcCCCC
Q psy15725        330 NVKQLFRRVAAALPGMD  346 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~  346 (355)
                      ||+++|++|++.+.+..
T Consensus       156 gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         156 GVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             THHHHHHHHHHHHHTSG
T ss_pred             CHHHHHHHHHHHHccCc
Confidence            99999999999887654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.5e-28  Score=197.85  Aligned_cols=166  Identities=30%  Similarity=0.419  Sum_probs=129.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      -+||+++|++|||||||++||.+..+...                      ...++++.++..+.+.++++...+.+||+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~d~   60 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMD----------------------SDCEVLGEDTYERTLMVDGESATIILLDM   60 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTC----------------------CC---CCTTEEEEEEEETTEEEEEEEECC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCcc----------------------ccccceeeecceeeeccCCceeeeeeecc
Confidence            58999999999999999999988543221                      22345566777788888898889999997


Q ss_pred             CC---cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         93 AG---QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        93 ~g---~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ++   +++|  ++..+++.+|++|+|||++++.+|+++..|+..+...                                
T Consensus        61 ~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~--------------------------------  106 (172)
T d2g3ya1          61 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA--------------------------------  106 (172)
T ss_dssp             TTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTS--------------------------------
T ss_pred             ccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhc--------------------------------
Confidence            65   4444  4566788888888888888888888887776665321                                


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       107 --------------------------------------------------------------------------------  106 (172)
T d2g3ya1         107 --------------------------------------------------------------------------------  106 (172)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY  329 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~  329 (355)
                                                      ....++|+++|+||+|+...+.+..+++.++++.+++++++|||++|.
T Consensus       107 --------------------------------~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~  154 (172)
T d2g3ya1         107 --------------------------------RQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH  154 (172)
T ss_dssp             --------------------------------GGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred             --------------------------------cccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCc
Confidence                                            001467888888888887777888888888999999999999999999


Q ss_pred             CHHHHHHHHHHHcCCCC
Q psy15725        330 NVKQLFRRVAAALPGMD  346 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~  346 (355)
                      ||+++|++|++.|..+|
T Consensus       155 ~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         155 NVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHcc
Confidence            99999999999986654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-27  Score=196.78  Aligned_cols=170  Identities=36%  Similarity=0.615  Sum_probs=120.8

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee-ecCcEEEEEEEe
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LEDRTVRLQLWD   91 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~i~D   91 (355)
                      -+||+++|++|||||||+++|+++.+...+.|+                       .+......... .+.....+.+||
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t-----------------------~~~~~~~~~~~~~~~~~~~~~~~d   58 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKAT-----------------------IGADFLTKEVTVDGDKVATMQVWD   58 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC--------------------------CCCSCEEEEECCSSSCCEEEEEEC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcc-----------------------cccceeeeeeeecCcccccceeec
Confidence            379999999999999999999997766555443                       33333333333 234457799999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      ++|++++...+..+++.+|++++|||++++.+|+.+..|+.++......                               
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-------------------------------  107 (175)
T d1ky3a_          59 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANV-------------------------------  107 (175)
T ss_dssp             CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-------------------------------
T ss_pred             cCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhh-------------------------------
Confidence            9999999999999999999999999999999999999998887532100                               


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                            .                                                                         
T Consensus       108 ------~-------------------------------------------------------------------------  108 (175)
T d1ky3a_         108 ------N-------------------------------------------------------------------------  108 (175)
T ss_dssp             ------S-------------------------------------------------------------------------
T ss_pred             ------c-------------------------------------------------------------------------
Confidence                  0                                                                         


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc-ccCCHHHHHHHHhhcC-cEEEEecCCCCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK-RQVSTEEGERKAKELN-VMFIETSAKAGY  329 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~-~~~~~~SA~~~~  329 (355)
                                                     ...++|+++++||+|+.+. +.+..+++.++++..+ +++++|||++|.
T Consensus       109 -------------------------------~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~  157 (175)
T d1ky3a_         109 -------------------------------SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI  157 (175)
T ss_dssp             -------------------------------CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred             -------------------------------ccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCc
Confidence                                           0035777788888887644 3466677778888776 689999999999


Q ss_pred             CHHHHHHHHHHHcCCCC
Q psy15725        330 NVKQLFRRVAAALPGMD  346 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~~  346 (355)
                      ||+++|++|++.+.+++
T Consensus       158 gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         158 NVDTAFEEIARSALQQN  174 (175)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            99999999999886544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-27  Score=192.58  Aligned_cols=170  Identities=34%  Similarity=0.598  Sum_probs=138.4

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+-+||+|+|++|||||||++||+.+.+...                       +.+|++..........++....+.+
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~~~i   59 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ-----------------------LFHTIGVEFLNKDLEVDGHFVTMQI   59 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC---------------------------CCSEEEEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCc-----------------------cccceeeeeeeeeeeecCceeeEee
Confidence            34668999999999999999999999555444                       4555667777777888888899999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCc
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTS  169 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (355)
                      ||++|..++...+..++..+|++++|||.+++.+|+.+..|++++.....                              
T Consensus        60 ~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~------------------------------  109 (174)
T d1wmsa_          60 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD------------------------------  109 (174)
T ss_dssp             EECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT------------------------------
T ss_pred             ecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhc------------------------------
Confidence            99999999999999999999999999999999999998888877643210                              


Q ss_pred             cccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccc
Q psy15725        170 KWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPS  249 (355)
Q Consensus       170 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~  249 (355)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (174)
T d1wmsa_         110 --------------------------------------------------------------------------------  109 (174)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCC
Q psy15725        250 YIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAG  328 (355)
Q Consensus       250 ~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~  328 (355)
                                                     .....+.|+++|+||+|+. ++.+..+++..+++..+ ++|++|||++|
T Consensus       110 -------------------------------~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~  157 (174)
T d1wmsa_         110 -------------------------------VKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDA  157 (174)
T ss_dssp             -------------------------------CSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTC
T ss_pred             -------------------------------cccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCC
Confidence                                           0000468899999999985 46788888888888765 79999999999


Q ss_pred             CCHHHHHHHHHHHcCC
Q psy15725        329 YNVKQLFRRVAAALPG  344 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~~  344 (355)
                      .||+++|++|++.|..
T Consensus       158 ~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         158 TNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhc
Confidence            9999999999998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.5e-27  Score=192.76  Aligned_cols=163  Identities=40%  Similarity=0.743  Sum_probs=131.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      -+||+|+|++|||||||+++++.+.+...                       +.||.+.++....+..++..+.+.+|||
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~i~~~~~~~~~~i~Dt   58 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPS-----------------------FITTIGIDFKIKTVDINGKKVKLQIWDT   58 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC------------------------------CCEEEEEEESSSCEEEEEEECC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc-----------------------cCCccceeEEEEEEEECCEEEEEEEEEC
Confidence            37999999999999999999999555444                       4556677888888888999999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWI  172 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (355)
                      ||++.|..++..+++++|++++|||++++.+|+.+..|+..+...                                   
T Consensus        59 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----------------------------------  103 (166)
T d1g16a_          59 AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH-----------------------------------  103 (166)
T ss_dssp             TTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHH-----------------------------------
T ss_pred             CCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcc-----------------------------------
Confidence            999999999999999999999999999998888877765544321                                   


Q ss_pred             ccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCccccccccccccc
Q psy15725        173 DDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIR  252 (355)
Q Consensus       173 ~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~  252 (355)
                                                                                                      
T Consensus       104 --------------------------------------------------------------------------------  103 (166)
T d1g16a_         104 --------------------------------------------------------------------------------  103 (166)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK  332 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~  332 (355)
                                                    .....|+++++||.|+. .+....+++..+++..++++++|||++|.||+
T Consensus       104 ------------------------------~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  152 (166)
T d1g16a_         104 ------------------------------ANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVN  152 (166)
T ss_dssp             ------------------------------SCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHH
T ss_pred             ------------------------------ccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHH
Confidence                                          11456777788888764 45566777888888889999999999999999


Q ss_pred             HHHHHHHHHcCC
Q psy15725        333 QLFRRVAAALPG  344 (355)
Q Consensus       333 ~l~~~l~~~i~~  344 (355)
                      ++|++|++.+.+
T Consensus       153 e~f~~l~~~i~~  164 (166)
T d1g16a_         153 EIFFTLAKLIQE  164 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3e-27  Score=194.62  Aligned_cols=174  Identities=25%  Similarity=0.455  Sum_probs=135.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      ++||+++|++|||||||++||+.+.+++.+.|+                       ++ +........++..+.+.+||+
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t-----------------------~~-~~~~~~~~~~~~~~~~~i~D~   57 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT-----------------------VF-ENYTASFEIDTQRIELSLWDT   57 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC-----------------------SE-EEEEEEEECSSCEEEEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCc-----------------------ee-ecccccccccceEEeeccccc
Confidence            689999999999999999999997766655444                       33 444555667888899999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchhhhHHHHH-HHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI-DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +|++.+...++.+++++|++++|||+++++||+.+..|. ..+...                                  
T Consensus        58 ~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~----------------------------------  103 (179)
T d1m7ba_          58 SGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF----------------------------------  103 (179)
T ss_dssp             CCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH----------------------------------
T ss_pred             cccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhcc----------------------------------
Confidence            999999999999999999999999999999999987654 444322                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYI  251 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~  251 (355)
                              ..++|+++||||+|+.....                                                    
T Consensus       104 --------~~~~~iilVgnK~Dl~~~~~----------------------------------------------------  123 (179)
T d1m7ba_         104 --------CPNTKMLLVGCKSDLRTDVS----------------------------------------------------  123 (179)
T ss_dssp             --------CTTCEEEEEEECGGGGGCHH----------------------------------------------------
T ss_pred             --------CCcceEEEEEecccccccch----------------------------------------------------
Confidence                    24789999999999633110                                                    


Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCC-
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGY-  329 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~-  329 (355)
                                      +       ...+.+.                 ..+.+..+++..+++..+ ++|++|||++|. 
T Consensus       124 ----------------~-------~~~~~~~-----------------~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n  163 (179)
T d1m7ba_         124 ----------------T-------LVELSNH-----------------RQTPVSYDQGANMAKQIGAATYIECSALQSEN  163 (179)
T ss_dssp             ----------------H-------HHHHHTT-----------------TCCCCCHHHHHHHHHHHTCSEEEECBTTTBHH
T ss_pred             ----------------h-------hHHHhhh-----------------hcCcchHHHHHHHHHHhCCCeEEEEeCCCCCc
Confidence                            0       0001110                 135577888888988877 599999999998 


Q ss_pred             CHHHHHHHHHHHcCC
Q psy15725        330 NVKQLFRRVAAALPG  344 (355)
Q Consensus       330 gv~~l~~~l~~~i~~  344 (355)
                      ||+++|+.+++.+.+
T Consensus       164 ~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         164 SVRDIFHVATLACVN  178 (179)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            599999999998865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.7e-27  Score=195.92  Aligned_cols=100  Identities=44%  Similarity=0.842  Sum_probs=88.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+|+|.+|||||||+++++++.+..                       .+.||++.++........+....+.+||++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~   59 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSN-----------------------QYKATIGADFLTKEVMVDDRLVTMQIWDTA   59 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCS-----------------------SCCCCCSEEEEEEEEESSSCEEEEEEEEEC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCC-----------------------CcCCccceeeeeeeeeeCCceEEEEeeecC
Confidence            799999999999999999999955444                       455666778888888888899999999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      |...+...+..++..+|++++|||.+++.+|..+..|++++..
T Consensus        60 g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~  102 (184)
T d1vg8a_          60 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI  102 (184)
T ss_dssp             SSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred             CcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHH
Confidence            9999999999999999999999999999999999999887754

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-27  Score=193.98  Aligned_cols=97  Identities=23%  Similarity=0.408  Sum_probs=79.7

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..|.+||+++|++|||||||+++|+++.+...                        .++.+ +...+.+.+++..+.+.+
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~------------------------~~t~~-~~~~~~i~v~~~~~~l~i   56 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVL------------------------EKTES-EQYKKEMLVDGQTHLVLI   56 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCC------------------------CCSSC-EEEEEEEEETTEEEEEEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCc------------------------CCccc-eeEEEEeecCceEEEEEE
Confidence            46789999999999999999999999765433                        22333 333566678899999999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT  136 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~  136 (355)
                      |||+|+..+     .+++.+|++|+|||+++++||+++..|++.+..
T Consensus        57 ~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~   98 (175)
T d2bmja1          57 REEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSS   98 (175)
T ss_dssp             EECSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             eeccccccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHH
Confidence            999998654     478899999999999999999999999888754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.5e-26  Score=185.72  Aligned_cols=152  Identities=39%  Similarity=0.672  Sum_probs=129.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++||+.+.+...                       +.++.+..+.............+.+||+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   58 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDR-----------------------TEATIGVDFRERAVDIDGERIKIQLWDT   58 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSS-----------------------CCCCCSCCEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc-----------------------cCcccccccceeeeeeeccceEEEEEec
Confidence            58999999999999999999999665544                       4445566666777778888899999999


Q ss_pred             CCcccccc-cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         93 AGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        93 ~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      +|...+.. .++.+++++|++++|||++++++|+.+..|+.++....                                 
T Consensus        59 ~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---------------------------------  105 (165)
T d1z06a1          59 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---------------------------------  105 (165)
T ss_dssp             CCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC---------------------------------
T ss_pred             cCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhc---------------------------------
Confidence            99877655 46778999999999999999999999999999887542                                 


Q ss_pred             cccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeecccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  227 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v  227 (355)
                             ...++|+++||||+|+..++.++.++..++++..+++++++||+++.+.
T Consensus       106 -------~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~  154 (165)
T d1z06a1         106 -------LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDN  154 (165)
T ss_dssp             -------CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGG
T ss_pred             -------cCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcC
Confidence                   2348999999999999888889999999999999999999999876543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.93  E-value=2.9e-26  Score=186.04  Aligned_cols=97  Identities=24%  Similarity=0.471  Sum_probs=79.3

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|..+.+.+.                       +.||++.++...    +...+.+.+||
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~-----------------------~~~T~~~~~~~~----~~~~~~~~i~D   53 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNED-----------------------MIPTVGFNMRKI----TKGNVTIKLWD   53 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------------------CCCCCSEEEEEE----EETTEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCc-----------------------ccccceeeeeee----eeeeEEEEEee
Confidence            368999999999999999999999655444                       445556554432    23457899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      +||++.+...+..++..+|++++|||++++.+|.....|+..+.
T Consensus        54 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~   97 (164)
T d1zd9a1          54 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLL   97 (164)
T ss_dssp             ECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhcccccccccccchhhhhhhhhh
Confidence            99999999999999999999999999999999988877766653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.92  E-value=6.1e-25  Score=178.27  Aligned_cols=93  Identities=26%  Similarity=0.550  Sum_probs=73.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||+++|.+..+                        .+..||++.....    ++.+.+.+.+||
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~------------------------~~~~~t~~~~~~~----~~~~~~~~~~~D   52 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV------------------------DTISPTLGFNIKT----LEHRGFKLNIWD   52 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC------------------------SSCCCCSSEEEEE----EEETTEEEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC------------------------CcccceEeeeeee----ccccccceeeee
Confidence            358999999999999999999987443                        2234555544332    334557899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID  132 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~  132 (355)
                      +||++.++..+..+++.+|++++|||+++..++.....++.
T Consensus        53 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~   93 (165)
T d1ksha_          53 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ   93 (165)
T ss_dssp             ECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHH
T ss_pred             cCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhh
Confidence            99999999999999999999999999999888877655443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.92  E-value=2.3e-25  Score=182.73  Aligned_cols=98  Identities=22%  Similarity=0.525  Sum_probs=77.7

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      +.+.+||+++|++|||||||+++|.++.+...                        .++.++++..    ++.+.+.+.+
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~------------------------~~~~~~~~~~----i~~~~~~~~i   64 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHI------------------------TPTQGFNIKS----VQSQGFKLNV   64 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE------------------------EEETTEEEEE----EEETTEEEEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc------------------------eeeeeeeEEE----eccCCeeEeE
Confidence            44679999999999999999999988654222                        2334433322    2334578999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      ||++|++.+...+..+++.+|++++|||++++.++.....|+..+.
T Consensus        65 ~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~  110 (176)
T d1fzqa_          65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELL  110 (176)
T ss_dssp             EECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHT
T ss_pred             eeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhh
Confidence            9999999999999999999999999999999999988877766653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.92  E-value=9.7e-26  Score=186.12  Aligned_cols=97  Identities=23%  Similarity=0.443  Sum_probs=73.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEE
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL   89 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i   89 (355)
                      ..+.+||+++|++|||||||+++|.++.+..                        ..||.+......    ..+.+.+.+
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~------------------------~~~t~~~~~~~~----~~~~~~~~i   65 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT------------------------TKPTIGFNVETL----SYKNLKLNV   65 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE------------------------ECSSTTCCEEEE----EETTEEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc------------------------cccccceEEEEE----eeCCEEEEE
Confidence            3467999999999999999999998754311                        124444433322    234578999


Q ss_pred             EecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         90 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        90 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      ||+||++.+...+..++..+|++++|||++++.++.....|+..+
T Consensus        66 ~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~  110 (182)
T d1moza_          66 WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLM  110 (182)
T ss_dssp             EEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHH
T ss_pred             EecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHH
Confidence            999999999999999999999999999999999998887776654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.92  E-value=3.5e-25  Score=181.17  Aligned_cols=95  Identities=18%  Similarity=0.453  Sum_probs=74.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|++|||||||++||..+.+..                        ..+|.+..+..    .....+.+.+||
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~------------------------~~~t~~~~~~~----~~~~~~~~~i~D   62 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVT------------------------TIPTVGFNVET----VTYKNVKFNVWD   62 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEE------------------------EEEETTEEEEE----EEETTEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCC------------------------ccceeeeeEEE----eeccceeeEEec
Confidence            46999999999999999999998854322                        12344443322    234457899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                      +||+..++..+..+++.+|++++|||+++..++..+..|+..+
T Consensus        63 ~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~  105 (173)
T d1e0sa_          63 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRI  105 (173)
T ss_dssp             ESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred             CCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHH
Confidence            9999999999999999999999999999998888877665554

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.90  E-value=9.7e-24  Score=169.80  Aligned_cols=94  Identities=16%  Similarity=0.366  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||++||.++.+...+..                       +.     ......+...+.+.+||++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~-----------------------~~-----~~~~~~~~~~~~~~~~d~~   52 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----------------------IG-----FNVETVEYKNISFTVWDVG   52 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCC-----------------------SS-----CCEEEEECSSCEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccc-----------------------ee-----eEEEEEeeeeEEEEEecCC
Confidence            5899999999999999999998665333211                       11     1122334566789999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHh
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  135 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~  135 (355)
                      |...+...+..+++.+++++++||..++.++.....|+.++.
T Consensus        53 g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~   94 (160)
T d1r8sa_          53 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML   94 (160)
T ss_dssp             CCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHH
T ss_pred             CcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988877766664

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.8e-22  Score=168.47  Aligned_cols=82  Identities=21%  Similarity=0.251  Sum_probs=68.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|+.|||||||++||..+.+                         .+.||+|+++...    ......+.+||
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-------------------------~~~pTiG~~~~~~----~~~~~~~~~~d   51 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG-------------------------SGVPTTGIIEYPF----DLQSVIFRMVD   51 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS-------------------------SCCCCCSCEEEEE----ECSSCEEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC-------------------------CCCceeeEEEEEE----eccceeeeecc
Confidence            468999999999999999999988543                         1346778765443    34567899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcc
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNAN  122 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~  122 (355)
                      ++|++.+...+..+++.++++++|||.++..
T Consensus        52 ~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~   82 (200)
T d2bcjq2          52 VGGQRSERRKWIHCFENVTSIMFLVALSEYD   82 (200)
T ss_dssp             CCCSTTGGGGGGGGCSSCSEEEEEEEGGGGG
T ss_pred             ccccccccccccccccccceeeEeeeccchh
Confidence            9999999999999999999999999998753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.3e-21  Score=162.46  Aligned_cols=83  Identities=18%  Similarity=0.292  Sum_probs=67.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+++|+.|||||||++||...+++..                            ++.    ...++.....+.+||
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~----------------------------~~~----~~~~~~~~~~~~i~D   48 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGT----------------------------GIV----ETHFTFKDLHFKMFD   48 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCC----------------------------SEE----EEEEEETTEEEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCc----------------------------cEE----EEEEEeeeeeeeeec
Confidence            469999999999999999999988554332                            221    122334557899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhh
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ  126 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~  126 (355)
                      ++|++.+...+..+++.++++++|+|+++.++|..
T Consensus        49 ~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~   83 (195)
T d1svsa1          49 VGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLA   83 (195)
T ss_dssp             ECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCS
T ss_pred             cccccccccchhhcccCCceeeeEEeecccchHHH
Confidence            99999999999999999999999999999877753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.84  E-value=4.6e-21  Score=156.73  Aligned_cols=94  Identities=26%  Similarity=0.446  Sum_probs=66.6

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||+|+|.+|||||||++|+.++++...                        .++.+...    .........+.+||
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~------------------------~~~~~~~~----~~~~~~~~~~~~~d   65 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT------------------------SPTIGSNV----EEIVINNTRFLMWD   65 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEE------------------------ECCSCSSC----EEEEETTEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCcc------------------------ccccceeE----EEEeecceEEEEec
Confidence            569999999999999999999999664321                        11222111    11122346899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  133 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~  133 (355)
                      +++.+.+...+..++..++++++|+|.++..+++....+...
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~  107 (177)
T d1zj6a1          66 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYK  107 (177)
T ss_dssp             CCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHH
T ss_pred             cccccccccchhhhhccceeeeeecccccccchhhhhhhhhh
Confidence            999999999999999999999999999998888765544433

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.83  E-value=3.8e-20  Score=149.60  Aligned_cols=91  Identities=21%  Similarity=0.419  Sum_probs=66.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      +.+||++||++|||||||+++++++.+...                        .++.+...    .....+...+.+||
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~------------------------~~~~~~~~----~~~~~~~~~~~~~~   55 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT------------------------IPTIGFNV----ETVTYKNLKFQVWD   55 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC------------------------CCCSSEEE----EEEEETTEEEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce------------------------ecccceee----eeeccCceEEEEee
Confidence            458999999999999999999999664332                        12222221    12223446889999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKW  130 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~  130 (355)
                      .++.+.+.......+...+++++++|+.+..++.....+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (169)
T d1upta_          56 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSE   94 (169)
T ss_dssp             ECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhhhhhhcchhhhccch
Confidence            999988888888888888888888888877666555443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=1.2e-19  Score=148.54  Aligned_cols=90  Identities=22%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGY  329 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~  329 (355)
                      +..+|++++|+|++++.+..+ ..+.+.+.. ...++|+++|+||+|+....   .+....+.+..+ ..++++||++|.
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~-~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~  156 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKP-LVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDER  156 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGG-GTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred             cccccceeeeechhhhhcccc-cchhhheec-cccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCC
Confidence            345788899999887665432 234444443 33679999999999985432   222334444444 489999999999


Q ss_pred             CHHHHHHHHHHHcCCC
Q psy15725        330 NVKQLFRRVAAALPGM  345 (355)
Q Consensus       330 gv~~l~~~l~~~i~~~  345 (355)
                      ||++++++|.+.+|+.
T Consensus       157 gi~~L~~~i~~~lpe~  172 (178)
T d1wf3a1         157 QVAELKADLLALMPEG  172 (178)
T ss_dssp             HHHHHHHHHHTTCCBC
T ss_pred             CHHHHHHHHHHhCCCC
Confidence            9999999999999753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=4e-19  Score=142.82  Aligned_cols=113  Identities=25%  Similarity=0.346  Sum_probs=87.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      ||+++|++|||||||+|+|.++.+..                        ..||.+....    ..........+||+++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~------------------------~~~t~~~~~~----~~~~~~~~~~~~~~~~   53 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT------------------------LQPTWHPTSE----ELAIGNIKFTTFDLGG   53 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC------------------------CCCCCSCEEE----EECCTTCCEEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe------------------------eeceeeEeEE----EeccCCeeEEEEeecc
Confidence            79999999999999999999965432                        2334443322    2334456789999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      ...+......++..++++++++|.++..++.....|...+...                                     
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-------------------------------------   96 (166)
T d2qtvb1          54 HIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNI-------------------------------------   96 (166)
T ss_dssp             SGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-------------------------------------
T ss_pred             chhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhh-------------------------------------
Confidence            9999999999999999999999999999988877766665432                                     


Q ss_pred             ccccCCCccEEEEEeecCCCC
Q psy15725        175 VRTERGSDVIIMLVGNKTDLS  195 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~  195 (355)
                         ....+.|+++++||.|+.
T Consensus        97 ---~~~~~~~i~i~~~k~d~~  114 (166)
T d2qtvb1          97 ---AELKDVPFVILGNKIDAP  114 (166)
T ss_dssp             ---TTTTTCCEEEEEECTTSS
T ss_pred             ---hccCCceEEEEecccccc
Confidence               334578889999999974

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=2.1e-18  Score=148.87  Aligned_cols=259  Identities=14%  Similarity=0.115  Sum_probs=146.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      -||+++|+.|+|||||+.+++...-.....+.+..++..+     +..+.+...  +++.......+.++..+++++|||
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~-----D~~~~E~~r--~~si~~~~~~~~~~~~~~n~iDtP   79 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATM-----DFMEQERER--GITITAAVTTCFWKDHRINIIDAP   79 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC------------------------C--CCCCCCSEEEEEETTEEEEEECCC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEE-----eccHHHHhc--CCccccceeeeccCCeEEEEecCC
Confidence            4799999999999999999987543222222222111110     111122222  233334444455666789999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCccccc
Q psy15725         94 GQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWID  173 (355)
Q Consensus        94 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
                      |+.+|...+...++.+|++|+|+|+.+.-..+...-|...-+                                      
T Consensus        80 G~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~--------------------------------------  121 (276)
T d2bv3a2          80 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--------------------------------------  121 (276)
T ss_dssp             SSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHT--------------------------------------
T ss_pred             chhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHH--------------------------------------
Confidence            999999999999999999999999999877777777744332                                      


Q ss_pred             cccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccC
Q psy15725        174 DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRD  253 (355)
Q Consensus       174 ~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~  253 (355)
                             .++|.++++||.|......  .....+....++.....+..+.+.+..  +.-++|......+.....   .+
T Consensus       122 -------~~lP~i~fINKmDr~~ad~--~~~l~ei~~~l~~~~vp~~~Pig~~~~--f~GvvDl~~~~a~~~~~~---~g  187 (276)
T d2bv3a2         122 -------YKVPRIAFANKMDKTGADL--WLVIRTMQERLGARPVVMQLPIGREDT--FSGIIDVLRMKAYTYGND---LG  187 (276)
T ss_dssp             -------TTCCEEEEEECTTSTTCCH--HHHHHHHHHTTCCCEEECEEEESCGGG--CCEEEETTTTEEEEESSS---SS
T ss_pred             -------cCCCEEEEEeccccccccc--chhHHHHHHHhCCCeEEEEecccCCCc--eeEEeeccceEEEEecCC---CC
Confidence                   3899999999999865332  233444455666666666655544322  233444433222211000   00


Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC--CC----CcccCCHHHH-----HHHHhhcCcEEEE
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD--LS----DKRQVSTEEG-----ERKAKELNVMFIE  322 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D--l~----~~~~v~~~~~-----~~~~~~~~~~~~~  322 (355)
                      .+.  ...++. ....+...++...+.+...+          .|  +.    +...+..++.     ....+..-+|+++
T Consensus       188 ~~~--~~~~ip-~~~~~~~~~~~~~l~e~vae----------~Dd~L~e~yle~~e~~~eel~~~l~~a~~~g~i~PV~~  254 (276)
T d2bv3a2         188 TDI--REIPIP-EEYLDQAREYHEKLVEVAAD----------FDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFL  254 (276)
T ss_dssp             CCE--EEECCC-GGGHHHHHHHHHHHHHHHHT----------TCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred             ccc--eeccCc-hHHHHHHHHHHHHHhhhhhc----------ccHHHHHHHhcCCCCCHHHHHHHHHHHHhcCcEEEEEE
Confidence            011  111111 11122233333333221100          01  10    1122333333     3334445579999


Q ss_pred             ecCCCCCCHHHHHHHHHHHcCC
Q psy15725        323 TSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       323 ~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +||.++.||+++++.|.+++|+
T Consensus       255 GSA~~n~GV~~LLD~i~~~~PS  276 (276)
T d2bv3a2         255 GSALKNKGVQLLLDAVVDYLPS  276 (276)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCC
T ss_pred             eECCCCcCHHHHHHHHHHhCCC
Confidence            9999999999999999999885

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.79  E-value=9.7e-20  Score=149.16  Aligned_cols=93  Identities=17%  Similarity=0.191  Sum_probs=56.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+.++|+++|++|+|||||+|+|++........                ....+  ...+................+.++
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~----------------~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~   64 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHD----------------KLPES--QKRGITIDIGFSAFKLENYRITLV   64 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------CCCEEEETTEEEEEC
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecc----------------cccce--eeeeeeccccccccccCCcccccc
Confidence            467899999999999999999998743211100                00001  111212222222223344678899


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      |++|+..|...+...+..+|++++|+|+++.
T Consensus        65 d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g   95 (179)
T d1wb1a4          65 DAPGHADLIRAVVSAADIIDLALIVVDAKEG   95 (179)
T ss_dssp             CCSSHHHHHHHHHHHTTSCCEEEEEEETTTC
T ss_pred             ccccccccccchhhhhhhccccccccccccc
Confidence            9999988877777777777888888777664

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=5.2e-20  Score=148.04  Aligned_cols=84  Identities=18%  Similarity=0.251  Sum_probs=63.3

Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCC
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN  330 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~g  330 (355)
                      +..++++++++|.++..+......|...+.... .++|+++|+||+|+..+...       +.+..+.+++++||++|.|
T Consensus        78 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~g  149 (161)
T d2gj8a1          78 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEG  149 (161)
T ss_dssp             HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTT
T ss_pred             HHhccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCC
Confidence            345788889999888877766666655555443 68999999999998543221       1223457999999999999


Q ss_pred             HHHHHHHHHHHc
Q psy15725        331 VKQLFRRVAAAL  342 (355)
Q Consensus       331 v~~l~~~l~~~i  342 (355)
                      |++++++|.+.+
T Consensus       150 i~~L~~~l~~~l  161 (161)
T d2gj8a1         150 VDVLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhC
Confidence            999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.79  E-value=4.2e-20  Score=151.78  Aligned_cols=118  Identities=23%  Similarity=0.349  Sum_probs=81.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      .+..||++||++|||||||+++|.++.+...                        .++.+....  .+..+  ...+.+|
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~------------------------~~~~~~~~~--~~~~~--~~~~~~~   62 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH------------------------VPTLHPTSE--ELTIA--GMTFTTF   62 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------------------------------CCCCCSCE--EEEET--TEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce------------------------eccccccee--EEEec--ccccccc
Confidence            3568999999999999999999998654322                        122222221  22222  3568899


Q ss_pred             ecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcc
Q psy15725         91 DTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSK  170 (355)
Q Consensus        91 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (355)
                      |+.++..+...+...+...+++++++|.++...+.....+.......                                 
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~---------------------------------  109 (186)
T d1f6ba_          63 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---------------------------------  109 (186)
T ss_dssp             EECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC---------------------------------
T ss_pred             cccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcc---------------------------------
Confidence            99999999999999999999999999999998887765544443321                                 


Q ss_pred             ccccccccCCCccEEEEEeecCCCCc
Q psy15725        171 WIDDVRTERGSDVIIMLVGNKTDLSD  196 (355)
Q Consensus       171 ~~~~~~~~~~~~~piilv~nK~D~~~  196 (355)
                             ....++|+++++||.|+..
T Consensus       110 -------~~~~~~~~li~~~K~D~~~  128 (186)
T d1f6ba_         110 -------ETIANVPILILGNKIDRPE  128 (186)
T ss_dssp             -------GGGTTSCEEEEEECTTSTT
T ss_pred             -------cccCCCceEEEEeccCccc
Confidence                   2235799999999999743

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.2e-19  Score=148.53  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=60.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .+||+++|++|||||||++||...                          ..+.||+|+....    ++.+...+.+||+
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f~--------------------------~~~~pTiG~~~~~----~~~~~~~~~~~D~   51 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRII--------------------------HGQDPTKGIHEYD----FEIKNVPFKMVDV   51 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH--------------------------HSCCCCSSEEEEE----EEETTEEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC--------------------------CCCCCeeeeEEEE----Eeeeeeeeeeecc
Confidence            589999999999999999999431                          1235677765433    3345678999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchh
Q psy15725         93 AGQERFRSLIPSYIRDSTVAVVVYDITNANSF  124 (355)
Q Consensus        93 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~  124 (355)
                      +|++.+...+..+++.++++++++|.++..++
T Consensus        52 ~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (200)
T d1zcba2          52 GGQRSERKRWFECFDSVTSILFLVSSSEFDQV   83 (200)
T ss_dssp             CC-------CTTSCTTCCEEEEEEETTCTTCE
T ss_pred             cceeeecccccccccccceeEEEEEcCCccee
Confidence            99999999999999999999999999986554

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.1e-18  Score=142.90  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             CcEEEEEEeCCCcc--cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        254 STVAVVVYDITNAN--SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       254 ~~~vi~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      ++++++++|.....  ++.....|+....... .++|+++|+||+|+.+++.+  ..........+.+++++||++|.||
T Consensus        80 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~iSA~tg~gi  156 (180)
T d1udxa2          80 TRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGL  156 (180)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHHH--HHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred             hhhhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHHHH--HHHHHHHHhcCCeEEEEEcCCCCCH
Confidence            55666666654332  1122222332221111 46899999999998755433  2233344456789999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q psy15725        332 KQLFRRVAAALPGMD  346 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~  346 (355)
                      +++++.|.+.+....
T Consensus       157 d~L~~~i~~~l~~~~  171 (180)
T d1udxa2         157 PALKEALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhhcC
Confidence            999999999987654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.77  E-value=1.7e-17  Score=142.87  Aligned_cols=254  Identities=16%  Similarity=0.139  Sum_probs=141.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|+.++|||||+.+++...-.....+.+..++..+     +....+...  +.+.......+.++..+++++||||
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~-----D~~~~E~~r--~~ti~~~~~~~~~~~~~~n~iDtPG   76 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTT-----DYTPEAKLH--RTTVRTGVAPLLFRGHRVFLLDAPG   76 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSS-----CCSHHHHHT--TSCCSCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccc-----cchHHHHHh--CCeEEeecccccccccceeEEccCc
Confidence            699999999999999999986442222222221111100     001111112  2222233333445557899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccCcccccc
Q psy15725         95 QERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKWIDD  174 (355)
Q Consensus        95 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (355)
                      +.+|...+...++.+|++++|+|+.+.-..+....|....+                                       
T Consensus        77 h~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~---------------------------------------  117 (267)
T d2dy1a2          77 YGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER---------------------------------------  117 (267)
T ss_dssp             SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---------------------------------------
T ss_pred             hhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhh---------------------------------------
Confidence            99999999999999999999999998777776666644332                                       


Q ss_pred             ccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEEEEEeCCCcccccccccccccCC
Q psy15725        175 VRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRLQLWDTAGQERFRSLIPSYIRDS  254 (355)
Q Consensus       175 ~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~  254 (355)
                            .++|.+++.||.|.....   ..........++ +...+..+.+.+  .-+.-+.|......+..      ...
T Consensus       118 ------~~~p~~i~iNk~D~~~~~---~~~l~~~~~~lg-~~vp~~~Pi~~~--~~f~GvvDl~~~~a~~~------~~~  179 (267)
T d2dy1a2         118 ------LGLPRMVVVTKLDKGGDY---YALLEDLRSTLG-PILPIDLPLYEG--GKWVGLIDVFHGKAYRY------ENG  179 (267)
T ss_dssp             ------TTCCEEEEEECGGGCCCH---HHHHHHHHHHHC-SEEECEEEEEET--TEEEEEEETTTTEEEEE------ETT
T ss_pred             ------cccccccccccccccccc---hhhhhhHHHHhc-cCcCeEeeeccC--CceeEEeecCcceEEEe------cCC
Confidence                  279999999999963211   122223333334 333333333222  22445566554333321      111


Q ss_pred             cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCC-CC----CcccCCHHHHH-----HHHhhcCcEEEEec
Q psy15725        255 TVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTD-LS----DKRQVSTEEGE-----RKAKELNVMFIETS  324 (355)
Q Consensus       255 ~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D-l~----~~~~v~~~~~~-----~~~~~~~~~~~~~S  324 (355)
                      ..  ...++. ....+....+.+.+.+...+         -.| +.    +...+..++..     ...+..-+|++++|
T Consensus       180 ~~--~~~~ip-~~~~~~~~~~r~~L~E~vae---------~Dd~Lle~yle~~~l~~eel~~~l~~ai~~g~i~PV~~GS  247 (267)
T d2dy1a2         180 EE--REAEVP-PEERERVQRFRQEVLEAIVE---------TDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALAS  247 (267)
T ss_dssp             EE--EEECCC-GGGHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECB
T ss_pred             CC--ceeeCC-HHHHHHHHHHHHHHHHHHHh---------cCHHHHHHHhCCCcccHHHHHHHHHHHHHcCcEEEEEeCc
Confidence            11  112221 11222233333333221100         001 10    11233333333     33334447999999


Q ss_pred             CCCCCCHHHHHHHHHHHcCC
Q psy15725        325 AKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       325 A~~~~gv~~l~~~l~~~i~~  344 (355)
                      |.++.||+++++.|.+++|+
T Consensus       248 A~~n~GV~~LLd~i~~~~Ps  267 (267)
T d2dy1a2         248 GEREIGVLPLLELILEALPS  267 (267)
T ss_dssp             TTTTBSHHHHHHHHHHHSCC
T ss_pred             CCCCcCHHHHHHHHHHhCCC
Confidence            99999999999999999885

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2.4e-18  Score=139.69  Aligned_cols=90  Identities=19%  Similarity=0.124  Sum_probs=63.4

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCH
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNV  331 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv  331 (355)
                      ..+|+++++.+.+....... ..+...+..   .++|+++|+||+|+..+  ...+...++.+....+++++||++|.||
T Consensus        79 ~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~---~~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gi  152 (171)
T d1mkya1          79 READLVLFVVDGKRGITKED-ESLADFLRK---STVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINL  152 (171)
T ss_dssp             TTCSEEEEEEETTTCCCHHH-HHHHHHHHH---HTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred             ccCcEEEEeecccccccccc-ccccccccc---ccccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCH
Confidence            45788888888877665433 344555554   47899999999998532  2122223333334457899999999999


Q ss_pred             HHHHHHHHHHcCCCCC
Q psy15725        332 KQLFRRVAAALPGMDS  347 (355)
Q Consensus       332 ~~l~~~l~~~i~~~~~  347 (355)
                      ++++++|.+.++++..
T Consensus       153 d~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         153 DTMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCCCC
Confidence            9999999999876643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=9.7e-19  Score=143.90  Aligned_cols=67  Identities=18%  Similarity=0.164  Sum_probs=49.6

Q ss_pred             CCceEEEEeeCCCCCCcccCCHHHHHHHHhh--cCcEEEEecCCCCCCHHHHHHHHHHHcCCCCCCCCCCCCC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKE--LNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPPED  355 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~~~~~~~~~  355 (355)
                      .++|+++|+||+|+.+...    ....+.+.  .+.+++++||++|.||++++++|.+.++........++||
T Consensus       116 ~~kp~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p~~~~~d~e~  184 (185)
T d1lnza2         116 TERPQIIVANKMDMPEAAE----NLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLYDEEE  184 (185)
T ss_dssp             TTSCBCBEEECTTSTTHHH----HHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCSSCSCC
T ss_pred             cCCcchhhccccchHhHHH----HHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhhCCCCCCCCccc
Confidence            4789999999999864321    12223332  3578999999999999999999999998766555555554

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=8.5e-18  Score=138.22  Aligned_cols=89  Identities=22%  Similarity=0.226  Sum_probs=61.8

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhh-----cCcEEEEecCC
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE-----LNVMFIETSAK  326 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~SA~  326 (355)
                      ..+|++++++|.+.+...+. ..+...+..   .+.|+++|+||+|+.........+.....+.     ...+++++||+
T Consensus        90 ~~~dvii~v~d~~~~~~~~~-~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~  165 (186)
T d1mkya2          90 EKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD  165 (186)
T ss_dssp             HHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred             hcCCEEEEeecccccchhhH-HHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCC
Confidence            45789999999987655332 334444444   5799999999999864443333333322221     23589999999


Q ss_pred             CCCCHHHHHHHHHHHcCC
Q psy15725        327 AGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       327 ~~~gv~~l~~~l~~~i~~  344 (355)
                      +|.||++|+++|.+.+..
T Consensus       166 ~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         166 KGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999876654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=7.7e-18  Score=134.96  Aligned_cols=79  Identities=16%  Similarity=0.215  Sum_probs=51.4

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      +|++++++|.+++...+... ....+     ...++++++||.|+.+..  ..+.... ....+.+++++||++|.||++
T Consensus        81 ad~ii~v~d~~~~~~~~~~~-~~~~~-----~~~~~i~~~~k~d~~~~~--~~~~~~~-~~~~~~~~~~vSA~~g~gi~~  151 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEKI--NEEEIKN-KLGTDRHMVKISALKGEGLEK  151 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCCC--CHHHHHH-HHTCSTTEEEEEGGGTCCHHH
T ss_pred             CCEEEEEEeCCCCcchhhhh-hhhhc-----ccccceeeeeeccccchh--hhHHHHH-HhCCCCcEEEEECCCCCCHHH
Confidence            66777777777666543321 11111     456788889999986432  2222221 122346899999999999999


Q ss_pred             HHHHHHHH
Q psy15725        334 LFRRVAAA  341 (355)
Q Consensus       334 l~~~l~~~  341 (355)
                      |+++|.+.
T Consensus       152 L~~~I~ke  159 (160)
T d1xzpa2         152 LEESIYRE  159 (160)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999874

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=8e-19  Score=148.51  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=66.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      ..+||+++|++|||||||++|+..++                           ..||+|+....  +.  .+.+.+.+||
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~---------------------------~~pTiG~~~~~--~~--~~~~~~~~~D   53 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILH---------------------------VVLTSGIFETK--FQ--VDKVNFHMFD   53 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHH---------------------------CCCCCSCEEEE--EE--ETTEEEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCC---------------------------cCCCCCeEEEE--EE--ECcEEEEEEe
Confidence            35899999999999999999997743                           23566755333  22  3457899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcch
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANS  123 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  123 (355)
                      ++|++.++..|..++..++++++|+|.++...
T Consensus        54 ~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~   85 (221)
T d1azta2          54 VGGQRDERRKWIQCFNDVTAIIFVVASSSYNM   85 (221)
T ss_dssp             CCCSTTTTTGGGGGCTTCSEEEEEEETTGGGC
T ss_pred             cCccceeccchhhhcccccceEEEEEcccccc
Confidence            99999999999999999999999999987543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=1.3e-17  Score=141.53  Aligned_cols=103  Identities=18%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             EEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCCc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   95 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~   95 (355)
                      |+|+|++++|||||+++|++........+.+....      .............. ........++.+..++.++||||+
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iDtPGh   80 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHI------GATEIPMDVIEGIC-GDFLKKFSIRETLPGLFFIDTPGH   80 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBT------TEEEEEHHHHHHHS-CGGGGGCGGGGTCCEEEEECCCTT
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeec------cccccccccccccc-cccccceeecccccccccccccce
Confidence            99999999999999999998542221111110000      00000000000000 000111223455568899999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchhh
Q psy15725         96 ERFRSLIPSYIRDSTVAVVVYDITNANSFH  125 (355)
Q Consensus        96 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  125 (355)
                      ..|...+...+..+|++|+|+|+.+.-..+
T Consensus        81 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~~  110 (227)
T d1g7sa4          81 EAFTTLRKRGGALADLAILIVDINEGFKPQ  110 (227)
T ss_dssp             SCCTTSBCSSSBSCSEEEEEEETTTCCCHH
T ss_pred             ecccccchhcccccceEEEEEecccCcccc
Confidence            999999989999999999999998854433

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.70  E-value=2.9e-16  Score=130.98  Aligned_cols=113  Identities=19%  Similarity=0.173  Sum_probs=79.7

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCC-ceEEEEeeCCCCCCcccCCH--
Q psy15725        230 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSD-VIIMLVGNKTDLSDKRQVST--  306 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piilv~nK~Dl~~~~~v~~--  306 (355)
                      ..+.++|+||+..|.......+..+|++++|+|..++.......+.+..+..   .+ .|+|++.||+|+.+......  
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~---~~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI---IGVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH---TTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH---cCCceeeeccccCCCccchHHHHHH
Confidence            3578999999999987767777889999999999887422222233333333   24 48999999999975432211  


Q ss_pred             HHHHHHHhhc---CcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        307 EEGERKAKEL---NVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~~~~~~~~~---~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .....+....   .+|++++||++|.||++|++.|..+||.+
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~P  204 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  204 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCCC
Confidence            1112222222   36899999999999999999999999863

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.3e-17  Score=136.86  Aligned_cols=60  Identities=27%  Similarity=0.274  Sum_probs=40.9

Q ss_pred             CCceEEEEeeCCCCCCcccC-CHHHHHHHHh---hcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        285 SDVIIMLVGNKTDLSDKRQV-STEEGERKAK---ELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       285 ~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~---~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      .++|+++|+||+|+.+.... .......+..   .....++++||++|.||++++++|.+.+++
T Consensus       120 ~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         120 LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeeeehhhhHHHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            57999999999997643221 1111111111   111358999999999999999999998874

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=7.7e-17  Score=134.77  Aligned_cols=120  Identities=19%  Similarity=0.294  Sum_probs=84.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||+++|+++.+...+                        +|++.++....+ .++....+.+||++|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~------------------------~t~~~~~~~~~~-~~~~~~~~~~~d~~g   56 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ------------------------TSITDSSAIYKV-NNNRGNSLTLIDLPG   56 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC------------------------CCCSCEEEEEEC-SSTTCCEEEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc------------------------CCeeEEEEEEEE-eeeeeeeeeeeeccc
Confidence            6999999999999999999996654332                        233333332222 234567899999999


Q ss_pred             ccccc-ccccccccCccEEEEEEECCCcchh-hhHHHHH-HHHhhhcCCceEEeeccccccccccccccccCccccCccc
Q psy15725         95 QERFR-SLIPSYIRDSTVAVVVYDITNANSF-HQTSKWI-DDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQTSKW  171 (355)
Q Consensus        95 ~~~~~-~~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (355)
                      ++.++ ..+..++..++++++|||+++..++ .....|+ ..+...                                  
T Consensus        57 ~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~----------------------------------  102 (207)
T d2fh5b1          57 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS----------------------------------  102 (207)
T ss_dssp             CHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred             cccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhH----------------------------------
Confidence            98875 4677788999999999999997664 4443333 333221                                  


Q ss_pred             cccccccCCCccEEEEEeecCCCCccc
Q psy15725        172 IDDVRTERGSDVIIMLVGNKTDLSDKR  198 (355)
Q Consensus       172 ~~~~~~~~~~~~piilv~nK~D~~~~~  198 (355)
                           ......+|+++|+||+|+.+.+
T Consensus       103 -----~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1         103 -----MALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             -----HTSTTCCEEEEEEECTTSTTCC
T ss_pred             -----HHhhcCCcEEEEEECcccCCCC
Confidence                 1223478999999999997644

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.68  E-value=4.7e-16  Score=128.66  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=80.9

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC--H
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--T  306 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~--~  306 (355)
                      ...+.++|+||+..|.......+..+|++++++|..+....+...+.+..+...  ...+++++.||+|+.+.....  .
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~--~~~~iiv~inK~D~~d~~~~~~~~  154 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII--GQKNIIIAQNKIELVDKEKALENY  154 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh--cCccceeeeecccchhhHHHHHHH
Confidence            456788999999999888777788899999999998875434333444444332  234588899999987543221  1


Q ss_pred             HHHHHHHhhc---CcEEEEecCCCCCCHHHHHHHHHHHcC
Q psy15725        307 EEGERKAKEL---NVMFIETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       307 ~~~~~~~~~~---~~~~~~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      .....+....   .++++++||++|.||++|+++|.+.+|
T Consensus       155 ~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         155 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            1122233222   268999999999999999999999987

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.3e-16  Score=128.30  Aligned_cols=114  Identities=39%  Similarity=0.662  Sum_probs=99.1

Q ss_pred             ccceEEEEEEeCCCcccccc-cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCccc
Q psy15725        226 NVKQVRLQLWDTAGQERFRS-LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQ  303 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~-~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~  303 (355)
                      ........+|+..|...+.. .++.++.+++++++|||++++.+++.+..|+..+..+.. .++|+++|+||+|+.+++.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~  126 (165)
T d1z06a1          47 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ  126 (165)
T ss_dssp             TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC
T ss_pred             eccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccc
Confidence            34466778899988776654 577889999999999999999999999999999877543 6899999999999988888


Q ss_pred             CCHHHHHHHHhhcCcEEEEecCCC---CCCHHHHHHHHH
Q psy15725        304 VSTEEGERKAKELNVMFIETSAKA---GYNVKQLFRRVA  339 (355)
Q Consensus       304 v~~~~~~~~~~~~~~~~~~~SA~~---~~gv~~l~~~l~  339 (355)
                      +..+++..+++.+++++++|||++   +.||+++|++|+
T Consensus       127 v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         127 VPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             SCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             hhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence            999999999999999999999997   559999999874

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.67  E-value=1.9e-16  Score=130.49  Aligned_cols=103  Identities=11%  Similarity=0.045  Sum_probs=69.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      |.+||+++|+.++|||||+++|++.......       ..+-.....+....+  ...|++.......+.+....+.++|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~-------~~~~~~~~~~~~~~E--r~rgiTi~~~~~~~~~~~~~~~~iD   72 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGG-------AKFKKYEEIDNAPEE--RARGITINAAHVEYSTAARHYAHTD   72 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTS-------BCCCCHHHHHSCCEE--EETTEEEECEEEEEECSSCEEEEEE
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCc-------chhhhhhhcccchhh--cCCCccCCcceEEEEeceeeEEeec
Confidence            5689999999999999999999862110000       000000000111122  2234444445555566667899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcch
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANS  123 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  123 (355)
                      |||+..|...+...+..+|++++|+|+.+...
T Consensus        73 tPGh~~f~~~~~~~~~~aD~allVVda~~G~~  104 (196)
T d1d2ea3          73 CPGHADYVKNMITGTAPLDGCILVVAANDGPM  104 (196)
T ss_dssp             CSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC
T ss_pred             CcchHHHHHHHHHHHhhcCeEEEEEEcCCCCc
Confidence            99999999998889999999999999988543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.63  E-value=4.3e-15  Score=122.72  Aligned_cols=86  Identities=10%  Similarity=0.123  Sum_probs=60.3

Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHH----HhhcCcEEEEecCCCC
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK----AKELNVMFIETSAKAG  328 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~~~SA~~~  328 (355)
                      .++++++++|++.+...+. .++++.+..   .++|+++|+||+|+.++..+.. ....+    ......+++++||++|
T Consensus       105 ~~~~vi~viD~~~~~~~~~-~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~SA~~~  179 (195)
T d1svia_         105 ELKAVVQIVDLRHAPSNDD-VQMYEFLKY---YGIPVIVIATKADKIPKGKWDK-HAKVVRQTLNIDPEDELILFSSETK  179 (195)
T ss_dssp             TEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCGGGHHH-HHHHHHHHHTCCTTSEEEECCTTTC
T ss_pred             chhhhhhhhhccccccccc-ccccccccc---ccCcceechhhccccCHHHHHH-HHHHHHHHhcccCCCCEEEEeCCCC
Confidence            3567888899887655322 345555554   5799999999999865544322 11222    2224468999999999


Q ss_pred             CCHHHHHHHHHHHcC
Q psy15725        329 YNVKQLFRRVAAALP  343 (355)
Q Consensus       329 ~gv~~l~~~l~~~i~  343 (355)
                      .|+++++++|.+.+.
T Consensus       180 ~gi~el~~~i~~~l~  194 (195)
T d1svia_         180 KGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhC
Confidence            999999999998874

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=6.3e-16  Score=128.42  Aligned_cols=112  Identities=13%  Similarity=0.091  Sum_probs=72.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      |.+||+++|+.++|||||+++|++..-......++      ......+..+.+....+.++.  ....+.+....+.++|
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~------~~~~~~d~~~eE~~rgiTi~~--~~~~~~~~~~~i~iiD   73 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEV------KDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVD   73 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCC------CCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEE
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcch------hhhhhcccchHHhcCCeEEEe--eEEEEEeCCeEEEEEe
Confidence            56999999999999999999998532100000000      000001111222222333333  3334445556899999


Q ss_pred             cCCcccccccccccccCccEEEEEEECCCcchhhhHHHHH
Q psy15725         92 TAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI  131 (355)
Q Consensus        92 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~  131 (355)
                      |||+..|-..+...++.+|++|+|+|+.+....+....|.
T Consensus        74 tPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~  113 (204)
T d2c78a3          74 CPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL  113 (204)
T ss_dssp             CCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH
Confidence            9999999999999999999999999999876666555443

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.5e-15  Score=126.85  Aligned_cols=118  Identities=20%  Similarity=0.248  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      -+|+++|++|||||||+|+|+++.+.+.                           +....  ....++.....+.+||+|
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~~---------------------------tt~~~--~~~~~~~~~~~~~l~D~~   54 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRPT---------------------------VVSQE--PLSAADYDGSGVTLVDFP   54 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCCB---------------------------CCCSS--CEEETTGGGSSCEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCe---------------------------EEecc--eEEEEEeCCeEEEEEecc
Confidence            4899999999999999999999654221                           11111  112223344568899999


Q ss_pred             Cccccccccccc----ccCccEEEEEEECCC-cchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCccccC
Q psy15725         94 GQERFRSLIPSY----IRDSTVAVVVYDITN-ANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQT  168 (355)
Q Consensus        94 g~~~~~~~~~~~----~~~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (355)
                      |+..+...+..+    ...++.+++++|+.+ ..+++....|+......                               
T Consensus        55 g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~-------------------------------  103 (209)
T d1nrjb_          55 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSI-------------------------------  103 (209)
T ss_dssp             CCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHH-------------------------------
T ss_pred             cccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHH-------------------------------
Confidence            998776654444    445689999999875 56677776666543321                               


Q ss_pred             ccccccccccCCCccEEEEEeecCCCCcc
Q psy15725        169 SKWIDDVRTERGSDVIIMLVGNKTDLSDK  197 (355)
Q Consensus       169 ~~~~~~~~~~~~~~~piilv~nK~D~~~~  197 (355)
                            .......++|+++|+||+|+.+.
T Consensus       104 ------~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_         104 ------TESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             ------HHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ------HHHHHhccCCeEEEEEeeccccc
Confidence                  11233458999999999998653

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4e-14  Score=114.95  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=59.7

Q ss_pred             CCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcC-cEEEEecCCCCCCH
Q psy15725        253 DSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNV  331 (355)
Q Consensus       253 ~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~~~gv  331 (355)
                      .+++++++.|.++...  ....+...+..   ...|++++.||.|..............+....+ .+++++||++|.|+
T Consensus        85 ~~~~~l~~~d~~~~~~--~~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi  159 (179)
T d1egaa1          85 DVELVIFVVEGTRWTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  159 (179)
T ss_dssp             CEEEEEEEEETTCCCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             hcceeEEEEecCccch--hHHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCH
Confidence            4566777777664432  22234444443   567889999999976443222333344444555 59999999999999


Q ss_pred             HHHHHHHHHHcCCC
Q psy15725        332 KQLFRRVAAALPGM  345 (355)
Q Consensus       332 ~~l~~~l~~~i~~~  345 (355)
                      ++|+++|.+.+|+.
T Consensus       160 ~~L~~~i~~~lpe~  173 (179)
T d1egaa1         160 DTIAAIVRKHLPEA  173 (179)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999999754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.48  E-value=1.3e-13  Score=115.41  Aligned_cols=175  Identities=19%  Similarity=0.230  Sum_probs=99.6

Q ss_pred             CCCcceeEEEEEcCCCCChhHHHHHhhhcCCC--CCceeeee------ccccee--eecccCCCCCccccccceeeeeee
Q psy15725          8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD--NTYQATIV------GKTSLI--TRFMYDSFDNTYQATIGIDFLSKT   77 (355)
Q Consensus         8 ~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~~--~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~~   77 (355)
                      .+..+.+||+++|+.++|||||+++|+...-.  ........      |.+...  ..+..+....+...++..+.  ..
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~--~~   81 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDV--AY   81 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCC--EE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCcee--eE
Confidence            35567899999999999999999999864311  10000000      000000  00000000111112222222  22


Q ss_pred             eeecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccc
Q psy15725         78 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHL  157 (355)
Q Consensus        78 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
                      .........+.++||||+..|-..+......+|++++|+|+.+...-+....|.-. ..                     
T Consensus        82 ~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~-~~---------------------  139 (222)
T d1zunb3          82 RYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIA-SL---------------------  139 (222)
T ss_dssp             EEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHH-HH---------------------
T ss_pred             EEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHH-HH---------------------
Confidence            23334456799999999999999999999999999999999885444433322211 11                     


Q ss_pred             cccccCccccCccccccccccCCCccE-EEEEeecCCCCccccee----hhhhhhhhhcc-----CeEEEEeeeeecccc
Q psy15725        158 SFHHANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS----TEEGERKAKEL-----NVMFIETSAKAGYNV  227 (355)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~v~----~~~~~~~~~~~-----~~~~~~~sa~~~~~v  227 (355)
                                             .++| ++++.||.|+.+...-.    ..+...+....     .++++++|+.+|.|+
T Consensus       140 -----------------------~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni  196 (222)
T d1zunb3         140 -----------------------LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNV  196 (222)
T ss_dssp             -----------------------TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTT
T ss_pred             -----------------------cCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccC
Confidence                                   2544 78899999986532111    11222333333     257889999999887


Q ss_pred             ce
Q psy15725        228 KQ  229 (355)
Q Consensus       228 ~~  229 (355)
                      ..
T Consensus       197 ~~  198 (222)
T d1zunb3         197 VN  198 (222)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=4.1e-13  Score=118.92  Aligned_cols=116  Identities=16%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             cee-EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeee-----------
Q psy15725         12 RKF-KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-----------   79 (355)
Q Consensus        12 ~~~-~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------   79 (355)
                      .++ +|+|+|+.++|||||+.+|+...-.-.....      --.+++ +....+....+.+......+.           
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~------~~~~~~-D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~   87 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA------GEARFT-DTRKDEQERGITIKSTAISLYSEMSDEDVKEI   87 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-------------------------CCCBCCCEEEEEEECCHHHHHHC
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCcccccc------cccccc-ccchhHHhcCceEeCCEEEEEeccCcccccch
Confidence            445 5999999999999999999853311110000      011122 111222222222222222221           


Q ss_pred             ---ecCcEEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHH
Q psy15725         80 ---LEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  134 (355)
Q Consensus        80 ---~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  134 (355)
                         .+++...++++||||+.+|...+...++.+|++++|+|+.+.-..+...-|....
T Consensus        88 ~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~  145 (341)
T d1n0ua2          88 KQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL  145 (341)
T ss_dssp             SSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH
T ss_pred             hccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH
Confidence               2456788999999999999999999999999999999999987777666665544

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=2.2e-13  Score=115.40  Aligned_cols=110  Identities=15%  Similarity=0.205  Sum_probs=67.9

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCc--eee------eecccceeeecccCCCCCccccccceeeeeeeeeec
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QAT------IVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE   81 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~   81 (355)
                      +-+.++|+++|+.++|||||+.+|+...-.-..  ...      -.++..+-.....+....+...  |++.......+.
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~r--GiTi~~~~~~~~   80 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERER--GITIDIALWKFE   80 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHT--TCCCSCSCEEEE
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcc--eeccccceeEec
Confidence            345699999999999999999999863210000  000      0000000000000111112222  333333344444


Q ss_pred             CcEEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         82 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        82 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      ....+++++||||+..|...+...+..+|++|+|+|+.+.
T Consensus        81 ~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G  120 (239)
T d1f60a3          81 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  120 (239)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             cCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC
Confidence            5557899999999999999999999999999999999874

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=3e-12  Score=104.11  Aligned_cols=81  Identities=15%  Similarity=0.105  Sum_probs=49.9

Q ss_pred             EEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH--HHHHHHhh-c-CcEEEEecCCCCCCHHH
Q psy15725        258 VVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE--EGERKAKE-L-NVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       258 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~--~~~~~~~~-~-~~~~~~~SA~~~~gv~~  333 (355)
                      +.+.+......... ..+...+..   .+.++++++||+|+.+.......  ...+.... . ..+++++||++|.||++
T Consensus       103 ~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~  178 (188)
T d1puia_         103 VVLMDIRHPLKDLD-QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK  178 (188)
T ss_dssp             EEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHH
T ss_pred             EEeecccccchhHH-HHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHH
Confidence            34445544443222 334444444   57899999999998654322211  11122222 2 25899999999999999


Q ss_pred             HHHHHHHHc
Q psy15725        334 LFRRVAAAL  342 (355)
Q Consensus       334 l~~~l~~~i  342 (355)
                      |++.|.+.+
T Consensus       179 L~~~i~~~~  187 (188)
T d1puia_         179 LRQKLDTWF  187 (188)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=9.9e-13  Score=111.82  Aligned_cols=108  Identities=19%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCcee--------eeecccceeeecccCCCCCccccccceeeeeeeeeecCc
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--------TIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR   83 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   83 (355)
                      +.++|+++|+.++|||||+.+|+...-.-....        ...+...+...+...........  +...........+.
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~r--g~ti~~~~~~~~~~  100 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREK--GKTVEVGRAYFETE  100 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEECS
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhcccccccc--Cccccccccccccc
Confidence            468999999999999999999975321110000        00000000000011111111112  22222222333445


Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      ...+.++||||+..|-..+......+|++++|+|+.+.
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G  138 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  138 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCC
Confidence            56899999999999999999999999999999999874

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.32  E-value=9.4e-13  Score=110.74  Aligned_cols=108  Identities=19%  Similarity=0.288  Sum_probs=63.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeee--------ecccceeeecccCCCCCccccccceeeeeeeeeecCc
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI--------VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR   83 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~   83 (355)
                      |.++|+++|+-++|||||+.+|+...-.-......        .+..........+....+..  .+..........+.+
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~--rg~ti~~~~~~~~~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE--RGVTINLTFMRFETK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhc--CCccccceEEEEecC
Confidence            47899999999999999999997632100000000        00000000000000011111  122222333334455


Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCCc
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      ...++++||||+..|...+...++.+|++++|+|+.+.
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G  117 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG  117 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccC
Confidence            67899999999999999999999999999999999985

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=2.7e-11  Score=110.28  Aligned_cols=86  Identities=10%  Similarity=0.072  Sum_probs=48.6

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEec
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT   92 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~   92 (355)
                      .++|+|+|.+|||||||+|+|++......-                 .......+|..   ....+... ..-.+.+|||
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~-----------------~~~~g~~~tT~---~~~~~~~~-~~~~~~l~Dt  114 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEG-----------------AAKTGVVEVTM---ERHPYKHP-NIPNVVFWDL  114 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTT-----------------SCCCCC----C---CCEEEECS-SCTTEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCc-----------------cCCCCCCCCce---eeeeeecc-CCCeEEEEeC
Confidence            589999999999999999999985432210                 00000011110   00111111 1124779999


Q ss_pred             CCccccccc-----ccccccCccEEEEEEECC
Q psy15725         93 AGQERFRSL-----IPSYIRDSTVAVVVYDIT  119 (355)
Q Consensus        93 ~g~~~~~~~-----~~~~~~~~d~ii~v~d~~  119 (355)
                      ||.......     ....+..+|.++++.|..
T Consensus       115 PG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~  146 (400)
T d1tq4a_         115 PGIGSTNFPPDTYLEKMKFYEYDFFIIISATR  146 (400)
T ss_dssp             CCGGGSSCCHHHHHHHTTGGGCSEEEEEESSC
T ss_pred             CCcccccccHHHHHHHhhhhcceEEEEecCCC
Confidence            997543322     223356789988887643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.11  E-value=2.7e-10  Score=97.37  Aligned_cols=87  Identities=15%  Similarity=0.177  Sum_probs=53.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...++|+++|.+|||||||+|++++......                 +.....+.     .........++  ..+.++
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~v-----------------s~~~~~T~-----~~~~~~~~~~g--~~i~vi   85 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSI-----------------SPFQSEGP-----RPVMVSRSRAG--FTLNII   85 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCC-----------------CSSSCCCS-----SCEEEEEEETT--EEEEEE
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceee-----------------cCCCCcce-----eEEEEEEEecc--EEEEEE
Confidence            3569999999999999999999998653222                 11111111     11122223333  579999


Q ss_pred             ecCCccccccc-------cc--ccccCccEEEEEEECCCc
Q psy15725         91 DTAGQERFRSL-------IP--SYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        91 D~~g~~~~~~~-------~~--~~~~~~d~ii~v~d~~~~  121 (355)
                      ||||..+....       ..  ......+++++|++++..
T Consensus        86 DTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~  125 (257)
T d1h65a_          86 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY  125 (257)
T ss_dssp             ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC
T ss_pred             eeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCC
Confidence            99996432111       11  112457899999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.6e-10  Score=90.95  Aligned_cols=77  Identities=34%  Similarity=0.504  Sum_probs=65.3

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcc
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKR  302 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~  302 (355)
                      +...+.+.+||++|++.+..++..++.+++++++|||++++.+++.+..|...+......++|+++|+||+|+.+.+
T Consensus        46 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~  122 (177)
T d1kmqa_          46 DGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE  122 (177)
T ss_dssp             TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCH
T ss_pred             cccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchh
Confidence            44577899999999999999999999999999999999999999998775544444444789999999999986544

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.94  E-value=4.8e-10  Score=94.80  Aligned_cols=25  Identities=20%  Similarity=0.026  Sum_probs=22.5

Q ss_pred             CcEEEEecCCCCCCHHHHHHHHHHH
Q psy15725        317 NVMFIETSAKAGYNVKQLFRRVAAA  341 (355)
Q Consensus       317 ~~~~~~~SA~~~~gv~~l~~~l~~~  341 (355)
                      .++++++||++|+|+++++++|.+.
T Consensus       216 ~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         216 PVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999998764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.89  E-value=3e-09  Score=93.35  Aligned_cols=84  Identities=12%  Similarity=0.120  Sum_probs=50.7

Q ss_pred             cCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh----------hcCcEEE
Q psy15725        252 RDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK----------ELNVMFI  321 (355)
Q Consensus       252 ~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~----------~~~~~~~  321 (355)
                      ..+|..+++..+......+-   ....+.     ..+-++|.||.|+.............+..          .+..+++
T Consensus       163 ~~~D~~v~v~~p~~GD~iQ~---~k~gil-----E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~  234 (323)
T d2qm8a1         163 DLTDFFLVLMLPGAGDELQG---IKKGIF-----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVV  234 (323)
T ss_dssp             TTSSEEEEEECSCC---------CCTTHH-----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEE
T ss_pred             cccceEEEEeeccchhhhhh---hhhhHh-----hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceE
Confidence            34888888888776543322   112222     24568999999986443322221111111          1234799


Q ss_pred             EecCCCCCCHHHHHHHHHHHcC
Q psy15725        322 ETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       322 ~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      .|||++|.|++++.++|.+...
T Consensus       235 ~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         235 TISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHH
Confidence            9999999999999999977643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.9e-09  Score=94.72  Aligned_cols=85  Identities=13%  Similarity=0.095  Sum_probs=49.0

Q ss_pred             ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH--HHHH---HHH----hhcCcEEE
Q psy15725        251 IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGE---RKA----KELNVMFI  321 (355)
Q Consensus       251 ~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~---~~~----~~~~~~~~  321 (355)
                      ...+|.+++|..+......+-.   ...+.+     .+-++|.||+|.........  .+..   .+.    ..+..+++
T Consensus       165 ~~~aD~~l~v~~P~~Gd~iq~~---k~gi~e-----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~  236 (327)
T d2p67a1         165 ARMVDCFISLQIAGGGDDLQGI---KKGLME-----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL  236 (327)
T ss_dssp             HTTCSEEEEEECC------CCC---CHHHHH-----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred             hhccceEEEEecCCCchhhhhh---chhhhc-----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeE
Confidence            3458888888876555433322   222333     34478899999864322111  1111   111    11224899


Q ss_pred             EecCCCCCCHHHHHHHHHHHcC
Q psy15725        322 ETSAKAGYNVKQLFRRVAAALP  343 (355)
Q Consensus       322 ~~SA~~~~gv~~l~~~l~~~i~  343 (355)
                      .|||++|.||+++.++|.+...
T Consensus       237 ~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         237 TCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987553

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.3e-09  Score=85.64  Aligned_cols=76  Identities=36%  Similarity=0.654  Sum_probs=64.4

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHH-HHHHHHhhcCCCceEEEEeeCCCCCCcc
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK-WIDDVRTERGSDVIIMLVGNKTDLSDKR  302 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piilv~nK~Dl~~~~  302 (355)
                      +...+.+.+||++|++.+..++..++..++++++|||+++..+++++.. |...+... ..++|+++|+||+|+...+
T Consensus        49 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~  125 (183)
T d1mh1a_          49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDK  125 (183)
T ss_dssp             TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCH
T ss_pred             cCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhh
Confidence            3456778899999999999999999999999999999999999999876 45555544 3689999999999986544

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.71  E-value=1.4e-08  Score=81.69  Aligned_cols=115  Identities=22%  Similarity=0.352  Sum_probs=89.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhh-cCCCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||++|++.++..+..++..++++++|+|+++..++.....|+..+... ...+.|+++++||+|+.+.  ...
T Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~  136 (182)
T d1moza_          59 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSA  136 (182)
T ss_dssp             TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCH
T ss_pred             CCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCH
Confidence            4577899999999999999999999999999999999999999888877665443 3368999999999998532  222


Q ss_pred             HHHHH-----HHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        307 EEGER-----KAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       307 ~~~~~-----~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      .+...     .+...++++++|||++|+||+++|++|++.+.+
T Consensus       137 ~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         137 SEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            33222     234456899999999999999999999998854

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.67  E-value=1.7e-08  Score=88.78  Aligned_cols=101  Identities=18%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCC-CCCceeee----ecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEE
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATI----VGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ   88 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~   88 (355)
                      ++|++||.||||||||+|++++.+. .+.|+-|.    +|.+.-......+.+...+.|.      ...+........+.
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~   74 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ------NYEYRNGLALIPVK   74 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCS------SSCEETTEEEEEEE
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCcc------ccccccccccccEE
Confidence            5899999999999999999998652 11222111    0000000000000011111110      00011112346799


Q ss_pred             EEecCCccc-------ccccccccccCccEEEEEEECCC
Q psy15725         89 LWDTAGQER-------FRSLIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        89 i~D~~g~~~-------~~~~~~~~~~~~d~ii~v~d~~~  120 (355)
                      ++|+||.-.       .....-..++.+|++++|+|+.+
T Consensus        75 ~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          75 MVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             EEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             EEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            999999522       12223344678999999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=6.4e-08  Score=76.78  Aligned_cols=120  Identities=44%  Similarity=0.793  Sum_probs=108.3

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC---c
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD---K  301 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~---~  301 (355)
                      .+...+.+.+||++|.+.+..++..++..++++++|||++++.+++.+..|...+........|+++++||+|+..   .
T Consensus        47 ~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~  126 (170)
T d1ek0a_          47 INEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGE  126 (170)
T ss_dssp             ETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCC
T ss_pred             cccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccch
Confidence            3445788999999999999999999999999999999999999999999998887776667899999999999853   4


Q ss_pred             ccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        302 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       302 ~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      +.+...++..+++..+++|++|||++|.||+++|.+|++.|+-
T Consensus       127 ~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i~~  169 (170)
T d1ek0a_         127 RKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred             hhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHhcc
Confidence            6888899999999999999999999999999999999998874

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=2.9e-08  Score=81.36  Aligned_cols=113  Identities=16%  Similarity=0.157  Sum_probs=77.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCC-
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS-  305 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~-  305 (355)
                      ++..+.++||||+..|.......+..+|++++|+|+.++...+....|. .+..   .++| ++++.||+|+.+..... 
T Consensus        65 ~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~---~gi~~iiv~iNK~D~~~~~~~~~  140 (204)
T d2c78a3          65 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ---VGVPYIVVFMNKVDMVDDPELLD  140 (204)
T ss_dssp             SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH---TTCCCEEEEEECGGGCCCHHHHH
T ss_pred             CCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH---cCCCeEEEEEEecccCCCHHHHH
Confidence            3457789999999999988888889999999999999888766543333 3333   4776 78889999986532211 


Q ss_pred             --HHHHHHHHhhcC-----cEEEEecCCCC-----------C-------CHHHHHHHHHHHcCC
Q psy15725        306 --TEEGERKAKELN-----VMFIETSAKAG-----------Y-------NVKQLFRRVAAALPG  344 (355)
Q Consensus       306 --~~~~~~~~~~~~-----~~~~~~SA~~~-----------~-------gv~~l~~~l~~~i~~  344 (355)
                        ..+...+....+     ++++++||..+           .       ++.+|+++|.+++|.
T Consensus       141 ~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~~~~~~~~~~~~~~~~~~~~~I~eLLdaIde~iP~  204 (204)
T d2c78a3         141 LVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  204 (204)
T ss_dssp             HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhcCCCcccceeeeeechhhhhhhhcCccccCCcccchhhHHHHHHHHHHhCcC
Confidence              111222222222     57899998643           1       367788888888873

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.50  E-value=3e-07  Score=80.11  Aligned_cols=27  Identities=30%  Similarity=0.442  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDN   40 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~   40 (355)
                      -+|+|||..++|||||+|+|++..+.+
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP   51 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLP   51 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCC
Confidence            379999999999999999999988643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=4.8e-07  Score=78.46  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFD   39 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~   39 (355)
                      -+|+|+|..++|||||+|+|++..+.
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~l   52 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcC
Confidence            37999999999999999999998863

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.47  E-value=2.7e-07  Score=76.26  Aligned_cols=101  Identities=19%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCce-EEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~  306 (355)
                      ....+.++|+||+..|..........+|++++|+|+.....-+.... ..-+..   .++| +|++.||+|+.+..+-..
T Consensus        87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~~~---~gv~~iiv~vNK~D~~~~~~~~~  162 (222)
T d1zunb3          87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIASL---LGIKHIVVAINKMDLNGFDERVF  162 (222)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCEEEEEEECTTTTTSCHHHH
T ss_pred             cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHHHH---cCCCEEEEEEEccccccccceeh
Confidence            34578899999999998888778889999999999988876554322 222222   4655 999999999975432111


Q ss_pred             H----HHHHHHhhcC-----cEEEEecCCCCCCHH
Q psy15725        307 E----EGERKAKELN-----VMFIETSAKAGYNVK  332 (355)
Q Consensus       307 ~----~~~~~~~~~~-----~~~~~~SA~~~~gv~  332 (355)
                      .    +...+.+..+     ++++++||++|.||.
T Consensus       163 ~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         163 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            1    2223344433     478999999999984

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=8.6e-07  Score=72.38  Aligned_cols=74  Identities=19%  Similarity=0.290  Sum_probs=54.6

Q ss_pred             ceEEEEEEeCCCccccc-ccccccccCCcEEEEEEeCCCcccH-HHHHHHHHHH-Hhhc--CCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFR-SLIPSYIRDSTVAVVVYDITNANSF-HQTSKWIDDV-RTER--GSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~-~~~~~~~~~~~~vi~v~d~~~~~s~-~~~~~~~~~i-~~~~--~~~~piilv~nK~Dl~~~  301 (355)
                      ..+.+.+||++|++.++ ..+..++..++.+++|+|+++..+. .+..+++..+ ....  ..++|+++++||+|+.+.
T Consensus        45 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          45 RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             eeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            45677899999998886 4577888999999999999987653 4444444443 2222  256899999999999643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.43  E-value=3.6e-07  Score=79.14  Aligned_cols=96  Identities=17%  Similarity=0.186  Sum_probs=57.0

Q ss_pred             CCCCcceeEEEEEcCCCCChhHHHHHhhhcCC--CCCceeeeecccceeeecccCCCCCccccccceeeeeee-------
Q psy15725          7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT-------   77 (355)
Q Consensus         7 ~~~~~~~~~I~vvG~~~vGKStLl~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~-------   77 (355)
                      ++.....+||.+||.|+||||||+|++++...  ...|+.|                  +..|.+|.-..+..       
T Consensus         4 ~~~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypft------------------Ti~pn~g~v~v~d~r~~~l~~   65 (296)
T d1ni3a1           4 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYA------------------TIDPEEAKVAVPDERFDWLCE   65 (296)
T ss_dssp             CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSC------------------CCCTTEEEEEECCHHHHHHHH
T ss_pred             cCCCCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCcc------------------CccCCeEEEeccccchhhhhh
Confidence            44455679999999999999999999997542  2222221                  11233332110000       


Q ss_pred             -eeec-CcEEEEEEEecCCccc----ccc---cccccccCccEEEEEEECCC
Q psy15725         78 -MYLE-DRTVRLQLWDTAGQER----FRS---LIPSYIRDSTVAVVVYDITN  120 (355)
Q Consensus        78 -~~~~-~~~~~~~i~D~~g~~~----~~~---~~~~~~~~~d~ii~v~d~~~  120 (355)
                       .... .....+.+.|+||.-.    -..   ..-..++.+|+++.|+|+.+
T Consensus        66 ~~~~~~~~~~~i~~~DvaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          66 AYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             HHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccCCceecccceeeeccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence             0000 0124688999998532    111   23334679999999999876

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.40  E-value=2e-07  Score=80.14  Aligned_cols=89  Identities=20%  Similarity=0.268  Sum_probs=51.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCC-CceeeeecccceeeecccCCCCCccccccceeeeeee------eeecC-cE-
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKT------MYLED-RT-   84 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~------~~~~~-~~-   84 (355)
                      +||.+||-|+||||||+|++++..... .|+-                  .+..|.+|+-.....      -.++. +. 
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf------------------~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~   64 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPF------------------CTIEPNTGVVPMPDPRLDALAEIVKPERIL   64 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CC------------------CCCCCCSSEEECCCHHHHHHHHHHCCSEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCC------------------CCCCCceEEEecccHhHHHHHHhcCCCcee
Confidence            689999999999999999999865311 1111                  111233332110000      00011 11 


Q ss_pred             -EEEEEEecCCcc----ccccccc---ccccCccEEEEEEECCC
Q psy15725         85 -VRLQLWDTAGQE----RFRSLIP---SYIRDSTVAVVVYDITN  120 (355)
Q Consensus        85 -~~~~i~D~~g~~----~~~~~~~---~~~~~~d~ii~v~d~~~  120 (355)
                       ..+.++|+||.-    +=..+..   ..++.+|+++.|+|+..
T Consensus        65 ~a~i~~~Di~GLi~ga~~g~Glg~~FL~~ir~~d~LihVVr~f~  108 (278)
T d1jala1          65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (278)
T ss_dssp             CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             eeeEEEEEccccCCCcccCCCccHHHHHHHHhccceEEEeeccC
Confidence             358899999952    1122333   34679999999999754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=9.7e-07  Score=72.32  Aligned_cols=87  Identities=17%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             cccccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHh--hcCcEEEEec
Q psy15725        248 PSYIRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK--ELNVMFIETS  324 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~~S  324 (355)
                      +-..++.|.+++|+++..+. +...+++++-....   .++|.++|+||+||.++....  .......  ..+.+++.+|
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~--~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDLR--KVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHH--HHHHHHHHHTTTSCEEECC
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHHHH--HHHHhhcccccceeEEEec
Confidence            34568899999999887754 55667777777666   689999999999997654321  1122222  2346899999


Q ss_pred             CCCCCCHHHHHHHHH
Q psy15725        325 AKAGYNVKQLFRRVA  339 (355)
Q Consensus       325 A~~~~gv~~l~~~l~  339 (355)
                      |+++.|++++.++|.
T Consensus        80 a~~~~g~~~L~~~l~   94 (225)
T d1u0la2          80 AKTGMGIEELKEYLK   94 (225)
T ss_dssp             TTTCTTHHHHHHHHS
T ss_pred             cccchhHhhHHHHhc
Confidence            999999999988774

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.26  E-value=4.3e-07  Score=74.26  Aligned_cols=177  Identities=16%  Similarity=0.064  Sum_probs=94.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeec---ccceee-ecccCCCCCccccccceeee--eeeeeecCc
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVG---KTSLIT-RFMYDSFDNTYQATIGIDFL--SKTMYLEDR   83 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~   83 (355)
                      .-|.++|+++|+.++|||||+++|++...........-.   ...... .+..................  .........
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            346799999999999999999999863321110000000   000000 00000000000000000000  000000112


Q ss_pred             EEEEEEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccC
Q psy15725         84 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHAN  163 (355)
Q Consensus        84 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
                      ...+.++||||+..|-..+...+..+|++|+|+|+.+.-.-...+.-+..+..+                          
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--------------------------  138 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--------------------------  138 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--------------------------
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--------------------------
Confidence            346899999999999988888899999999999998852111111111222111                          


Q ss_pred             ccccCccccccccccCCCccEEEEEeecCCCCcccceeh--hhhhhhhhc---cCeEEEEeeeeeccccce
Q psy15725        164 SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGERKAKE---LNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~--~~~~~~~~~---~~~~~~~~sa~~~~~v~~  229 (355)
                                       .-.|+|++.||+|+.+......  .....+...   ..++++.+|+.++.|+++
T Consensus       139 -----------------~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~  192 (205)
T d2qn6a3         139 -----------------GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDS  192 (205)
T ss_dssp             -----------------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHH
T ss_pred             -----------------CCceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHH
Confidence                             1348899999999965432111  112222222   246899999999988765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.23  E-value=5.9e-07  Score=72.78  Aligned_cols=174  Identities=17%  Similarity=0.099  Sum_probs=97.8

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeeccc---ceeeecccCCCCCccccccceeeeeeeeeecCcEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKT---SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRL   87 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~   87 (355)
                      -+.++|+++|+.++|||||+++|++...........-+.|   .+.................  ...............+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   80 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTS--PVCPYCGHETEFVRRV   80 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESS--SBCTTTCCBCEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccce--eeeeeeeeeecCceeE
Confidence            3678999999999999999999987432221110000000   0000000000000000000  0000001112234679


Q ss_pred             EEEecCCcccccccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         88 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        88 ~i~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      .++||||+..|...+...+..+|++++|+|+.+....+.....+..+...                              
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~------------------------------  130 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII------------------------------  130 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH------------------------------
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh------------------------------
Confidence            99999999999999988999999999999999853222222222222222                              


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCccccee--hhhhhhhhhcc---CeEEEEeeeeeccccce
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS--TEEGERKAKEL---NVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~--~~~~~~~~~~~---~~~~~~~sa~~~~~v~~  229 (355)
                                   ...+++++.||.|+.+.....  ......+....   .++++++||.+|.|++.
T Consensus       131 -------------~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~  184 (195)
T d1kk1a3         131 -------------GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDV  184 (195)
T ss_dssp             -------------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHH
T ss_pred             -------------cCccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHH
Confidence                         134578899999987643221  12222333322   36899999999998765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.9e-06  Score=68.39  Aligned_cols=117  Identities=20%  Similarity=0.339  Sum_probs=96.7

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc---CCCceEEEEeeCCCCC--C
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER---GSDVIIMLVGNKTDLS--D  300 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piilv~nK~Dl~--~  300 (355)
                      +...+.+.+||++|+..+.     ++..+|++++|||+++..+++.+..|++.+....   ....|+++|+||.|+.  .
T Consensus        48 ~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~  122 (175)
T d2bmja1          48 DGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS  122 (175)
T ss_dssp             TTEEEEEEEEECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS
T ss_pred             CceEEEEEEeecccccccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhh
Confidence            3456888999999987653     6788999999999999999999999988875543   3678999999988874  4


Q ss_pred             cccCCHHHHHHHHhh-cCcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        301 KRQVSTEEGERKAKE-LNVMFIETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       301 ~~~v~~~~~~~~~~~-~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                      .+.+...++..++.. .+++|++|||++|.||+++|..|++.+.+.++
T Consensus       123 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         123 PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             CCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhh
Confidence            467888888887644 56899999999999999999999998876554

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.13  E-value=1.3e-06  Score=73.30  Aligned_cols=107  Identities=21%  Similarity=0.220  Sum_probs=59.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHH------HHHHHHHHHHhhcCCCce-EEEEeeCCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFH------QTSKWIDDVRTERGSDVI-IMLVGNKTDLSD  300 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~  300 (355)
                      ....+.+.|+||+..|..........+|++++|+|+.....-.      ...+.+..+..   .++| ++++.||.|+..
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPS  176 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTT
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCCc
Confidence            3456889999999999998888889999999999998753110      11122222222   3565 889999999864


Q ss_pred             cccC--CHHH----HHHHHhhc-------CcEEEEecCCCCCCHHHHHHH
Q psy15725        301 KRQV--STEE----GERKAKEL-------NVMFIETSAKAGYNVKQLFRR  337 (355)
Q Consensus       301 ~~~v--~~~~----~~~~~~~~-------~~~~~~~SA~~~~gv~~l~~~  337 (355)
                      .+.-  ...+    ...+.+..       .++++++||++|.||.++++.
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence            3211  1111    11111111       258999999999999876543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=1.5e-06  Score=74.14  Aligned_cols=27  Identities=30%  Similarity=0.552  Sum_probs=24.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ...++|+|+|.||||||||+|+|.+.+
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccc
Confidence            456999999999999999999999865

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=6.3e-06  Score=67.02  Aligned_cols=69  Identities=14%  Similarity=0.025  Sum_probs=39.7

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      -+.+++|+|.+...  +.+.+.......    --+--++++|.|-.  ...  ..........+.|+.+++  +|++|++
T Consensus       130 p~~~~LVl~a~~~~--~~~~~~~~~~~~----~~~~~lI~TKlDe~--~~~--G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         130 PHETLLVIDATTGQ--NGLVQAKIFKEA----VNVTGIILTKLDGT--AKG--GITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             CSEEEEEEEGGGHH--HHHHHHHHHHHH----SCCCEEEEECGGGC--SCT--THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cceeEEeeccccCc--chhhhhhhhccc----cCCceEEEecccCC--Ccc--cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            35678888865432  222222222222    12455889999952  223  344555666778888887  6777765


Q ss_pred             H
Q psy15725        334 L  334 (355)
Q Consensus       334 l  334 (355)
                      +
T Consensus       198 l  198 (213)
T d1vmaa2         198 L  198 (213)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.09  E-value=1.3e-06  Score=71.59  Aligned_cols=24  Identities=25%  Similarity=0.205  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      -..+++|++|||||||+|+|....
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh
Confidence            467999999999999999998753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.06  E-value=3.2e-06  Score=68.55  Aligned_cols=91  Identities=18%  Similarity=0.152  Sum_probs=49.3

Q ss_pred             EEEEEeCCCccccccc----cccc--------ccCCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCceEEEEeeCCC
Q psy15725        231 RLQLWDTAGQERFRSL----IPSY--------IRDSTVAVVVYDITNAN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTD  297 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~~----~~~~--------~~~~~~vi~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~D  297 (355)
                      .+.++||+|...+...    ...+        ...-+-+++|+|.+... ....+...+..+.       +--++.||.|
T Consensus        90 d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lI~TKlD  162 (207)
T d1okkd2          90 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVIVTKLD  162 (207)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEEEECTT
T ss_pred             CEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC-------CceEEEeccC
Confidence            4568899994433211    0011        11346778888876554 3333333333331       2347899999


Q ss_pred             CCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725        298 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       298 l~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l  334 (355)
                      -.  ....  -........+.|+.++|  +|++.+++
T Consensus       163 et--~~~G--~~l~~~~~~~~Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         163 GT--AKGG--VLIPIVRTLKVPIKFVG--VGEGPDDL  193 (207)
T ss_dssp             SS--CCCT--THHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred             CC--CCcc--HHHHHHHHHCCCEEEEe--CCCChHhC
Confidence            53  2222  33445566778888777  46666544

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.03  E-value=7.7e-06  Score=67.63  Aligned_cols=115  Identities=19%  Similarity=0.165  Sum_probs=82.2

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      .....+.++||||+..|.......+..+|++|+|+|+.++...+.. ..+..+..   .++|+|+++||+|+........
T Consensus        67 ~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~  142 (227)
T d1g7sa4          67 ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM---YRTPFVVAANKIDRIHGWRVHE  142 (227)
T ss_dssp             GTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSTTCCCCT
T ss_pred             ccccccccccccceecccccchhcccccceEEEEEecccCcccchh-HHHHHhhc---CCCeEEEEEECccCCCchhhhh
Confidence            3455678999999999988888888999999999999887664442 33444444   5899999999999864322110


Q ss_pred             H-----------------H-------HHHHHhh--------------cCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        307 E-----------------E-------GERKAKE--------------LNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~-----------------~-------~~~~~~~--------------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      .                 .       ...+...              ..++++++||++|.|+++|++.|.....+.
T Consensus       143 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            0                 0       0001110              114899999999999999999998876543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.03  E-value=3.9e-06  Score=69.94  Aligned_cols=101  Identities=15%  Similarity=0.122  Sum_probs=67.7

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc-------HHHHHHHHHHHHhhcCCCce-EEEEeeCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS-------FHQTSKWIDDVRTERGSDVI-IMLVGNKTDL  298 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s-------~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl  298 (355)
                      .+...+.++|+||+..|...+...+..+|++++|+|......       .+....|  .+...  .++| +|++.||.|+
T Consensus        81 ~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~--~~~~~--~gv~~iiv~iNKmD~  156 (239)
T d1f60a3          81 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA--LLAFT--LGVRQLIVAVNKMDS  156 (239)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH--HHHHH--TTCCEEEEEEECGGG
T ss_pred             cCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH--HHHHH--cCCCeEEEEEECCCC
Confidence            345789999999999999888888899999999999876421       1221112  22222  4665 8899999998


Q ss_pred             CCcccCCHH----HHHHHHhhcC-----cEEEEecCCCCCCH
Q psy15725        299 SDKRQVSTE----EGERKAKELN-----VMFIETSAKAGYNV  331 (355)
Q Consensus       299 ~~~~~v~~~----~~~~~~~~~~-----~~~~~~SA~~~~gv  331 (355)
                      .+.++-...    +...+....+     ++++++||.+|.|+
T Consensus       157 ~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni  198 (239)
T d1f60a3         157 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM  198 (239)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence            653321111    1222333222     57899999999887

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.02  E-value=2.9e-06  Score=70.11  Aligned_cols=115  Identities=16%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHH------HHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQ------TSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      +...+.++|+||+..|.........-+|++++|+|+.....-+.      ..+.+ .+.... ...++|++.||.|+..+
T Consensus        79 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l-~~~~~~-~~~~iIv~iNK~D~~~~  156 (224)
T d1jnya3          79 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHI-ILAKTM-GLDQLIVAVNKMDLTEP  156 (224)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHH-HHHHHT-TCTTCEEEEECGGGSSS
T ss_pred             CCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHH-HHHHHh-CCCceEEEEEcccCCCc
Confidence            35678999999999999988888889999999999987642211      11111 122221 23458999999998643


Q ss_pred             ccCC--H----HHHHHHHhhcC-----cEEEEecCCCCCCHHH-----------HHHHHHHHcCC
Q psy15725        302 RQVS--T----EEGERKAKELN-----VMFIETSAKAGYNVKQ-----------LFRRVAAALPG  344 (355)
Q Consensus       302 ~~v~--~----~~~~~~~~~~~-----~~~~~~SA~~~~gv~~-----------l~~~l~~~i~~  344 (355)
                      ..-.  .    .....+....+     ++++++||..|.||.+           +|+.+++.++.
T Consensus       157 ~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~s~~~~wy~~~~L~~~Ld~i~~  221 (224)
T d1jnya3         157 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLEL  221 (224)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCC
T ss_pred             cccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcccccccCCCcccccHHHHHhcCCC
Confidence            2111  1    11222323222     5799999999999854           45566666554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.99  E-value=9.2e-07  Score=72.69  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      +.-..+++|++|||||||+|+|.+..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            34456899999999999999998753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=8.2e-06  Score=66.12  Aligned_cols=68  Identities=9%  Similarity=-0.047  Sum_probs=39.2

Q ss_pred             CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCCCCCHHH
Q psy15725        254 STVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  333 (355)
Q Consensus       254 ~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~  333 (355)
                      -+.+++|.|.+....  .+.........    --+--+++||.|-.  ...  ..........++|+.++|  .|++|++
T Consensus       128 p~~~~LVl~a~~~~~--~~~~~~~~~~~----~~~~~lIlTKlDe~--~~~--G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         128 PHEVMLTIDASTGQN--AVSQAKLFHEA----VGLTGITLTKLDGT--AKG--GVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             CSEEEEEEEGGGTHH--HHHHHHHHHHH----SCCCEEEEECCTTC--TTT--THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cceeeeehhcccCcc--hHHHHhhhhhc----cCCceEEEeecCCC--CCc--cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            357788888764432  22222222221    12456889999953  222  344455666788988888  7777754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.91  E-value=1.2e-05  Score=62.06  Aligned_cols=116  Identities=19%  Similarity=0.358  Sum_probs=92.9

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCccc--
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQ--  303 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~--  303 (355)
                      ...+.+.+||++|...+...+..++..++++++++|+++..++.....|...+.... ....|+++++||.|+.+...  
T Consensus        41 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~  120 (160)
T d1r8sa_          41 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA  120 (160)
T ss_dssp             CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH
T ss_pred             eeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHH
Confidence            345678899999999999999999999999999999999999999888877765433 36899999999999864322  


Q ss_pred             -CCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        304 -VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       304 -v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                       +.......+++..++++++|||++|+||+++|++|.+++
T Consensus       121 ~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence             211112223445668999999999999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.87  E-value=2.9e-06  Score=69.66  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             ccccCCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHH--HHHHHHhhcCcEEEEecC
Q psy15725        249 SYIRDSTVAVVVYDITNA-NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE--EGERKAKELNVMFIETSA  325 (355)
Q Consensus       249 ~~~~~~~~vi~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~--~~~~~~~~~~~~~~~~SA  325 (355)
                      -..++.|.+++|+++.++ .+...+++++-....   .+++.++|+||+||.++......  ...+.....|.+++.+||
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeec
Confidence            346789999999988765 466667777766655   68999999999999754322111  122233456889999999


Q ss_pred             CCCCCHHHHHHHH
Q psy15725        326 KAGYNVKQLFRRV  338 (355)
Q Consensus       326 ~~~~gv~~l~~~l  338 (355)
                      +++.|++++.++|
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999999887765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=8.3e-06  Score=65.71  Aligned_cols=119  Identities=19%  Similarity=0.214  Sum_probs=79.1

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc----------HHHHHHHHHHHHh-hcCCCceEEEEee
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS----------FHQTSKWIDDVRT-ERGSDVIIMLVGN  294 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s----------~~~~~~~~~~i~~-~~~~~~piilv~n  294 (355)
                      ....+...+||++|++.++..|..++..+++++++++.++...          ++....++..+.. ....++|+++++|
T Consensus        40 ~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~N  119 (200)
T d1zcba2          40 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLN  119 (200)
T ss_dssp             EETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred             eeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEec
Confidence            3456788999999999999999999999999999999987543          3344445555433 3347899999999


Q ss_pred             CCCCCCcc----------------cCCHHHHHHHHhh-----------cCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        295 KTDLSDKR----------------QVSTEEGERKAKE-----------LNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       295 K~Dl~~~~----------------~v~~~~~~~~~~~-----------~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      |+|+.+..                .-....+.++...           ..+.++++||+++.||+++|+.+.+.|.+
T Consensus       120 K~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         120 KTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             CHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            99974210                0112223332211           23578899999999999999999887754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.87  E-value=1.3e-05  Score=65.00  Aligned_cols=93  Identities=12%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             EEEEEEeCCCcccccc------ccccc--ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        230 VRLQLWDTAGQERFRS------LIPSY--IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       230 i~~~i~D~~g~~~~~~------~~~~~--~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ..+.++||+|...+..      ....+  ....+-+++|++.+....  ...........   .++ --+++||.|..  
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~---~~~-~~lI~TKlDet--  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQA---SKI-GTIIITKMDGT--  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHH---CTT-EEEEEECTTSC--
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhcc---cCc-ceEEEecccCC--
Confidence            3456788998432221      01111  123457788888765432  22222222222   222 34679999953  


Q ss_pred             ccCCHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725        302 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       302 ~~v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l  334 (355)
                        .............++|+.++|  .|++|+++
T Consensus       167 --~~~G~~l~~~~~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         167 --AKGGGALSAVAATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             --SCHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             --CcccHHHHHHHHHCcCEEEEe--CCCCcccC
Confidence              234555666777889988888  68888654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.76  E-value=1.6e-05  Score=67.61  Aligned_cols=88  Identities=13%  Similarity=0.131  Sum_probs=63.5

Q ss_pred             cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCHHHHHHHHhhcCcEEEEecCCC
Q psy15725        248 PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA  327 (355)
Q Consensus       248 ~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  327 (355)
                      ...++.+|+|++|+|+.++.+..+  ..++.+.    .++|+|+|+||+|+.+.... . ...+..+..+.+.+++||++
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~~~-~-~w~~~f~~~~~~~i~isa~~   81 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAAVT-Q-QWKEHFENQGIRSLSINSVN   81 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHHHH-H-HHHHHHHTTTCCEEECCTTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchHHH-H-HHHHHHHhcCCccceeeccc
Confidence            345788999999999998887544  2233332    37899999999999755422 2 22333445567899999999


Q ss_pred             CCCHHHHHHHHHHHcC
Q psy15725        328 GYNVKQLFRRVAAALP  343 (355)
Q Consensus       328 ~~gv~~l~~~l~~~i~  343 (355)
                      +.|+.++.+.+.+.+.
T Consensus        82 ~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          82 GQGLNQIVPASKEILQ   97 (273)
T ss_dssp             CTTGGGHHHHHHHHHH
T ss_pred             CCCccccchhhhhhhh
Confidence            9999988887776654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.9e-05  Score=60.76  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=42.1

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      +...+.+.+||++|++.+..++..++.++|++++|||++++.+++.+..|+..+
T Consensus        44 ~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i   97 (168)
T d2gjsa1          44 DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL   97 (168)
T ss_dssp             TTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             cccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchh
Confidence            345788899999999999999999999999999999999999999988887766

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.70  E-value=1.9e-05  Score=62.41  Aligned_cols=148  Identities=20%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      =+|+++|++|||||||+|+|++......                 +   .....|  .......  .......+.+||||
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~-----------------~---~~~~tt--~~~~~~~--~~~~~~~~~~~Dtp   61 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPI-----------------S---PRPQTT--RKRLRGI--LTEGRRQIVFVDTP   61 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCC-----------------C---SSSCCC--CSCEEEE--EEETTEEEEEEECC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee-----------------c---ccCCcc--cccccce--eeeeeeeeeecccc
Confidence            4799999999999999999998542111                 0   001111  1111111  22233578999999


Q ss_pred             Ccccccc--------cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         94 GQERFRS--------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        94 g~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      |......        .....+..+|++++|+|++++.+... ..|.+.++..                            
T Consensus        62 G~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~----------------------------  112 (178)
T d1wf3a1          62 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPL----------------------------  112 (178)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG----------------------------
T ss_pred             cccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheecc----------------------------
Confidence            9754433        22344678999999999988654432 3344444321                            


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccC-eEEEEeeeeeccccceEE
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~-~~~~~~sa~~~~~v~~i~  231 (355)
                                    ..+.|+++|+||+|+.....   +....+....+ ..++.+||.++.+++.++
T Consensus       113 --------------~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~  162 (178)
T d1wf3a1         113 --------------VGKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSALDERQVAELK  162 (178)
T ss_dssp             --------------TTTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCTTCHHHHHHHH
T ss_pred             --------------ccchhhhhhhcccccccCHH---HHHHHHHhhcccCceEEEecCCCCCHHHHH
Confidence                          13689999999999855321   22233333333 467789999998887643

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.68  E-value=4.2e-05  Score=61.82  Aligned_cols=92  Identities=15%  Similarity=0.060  Sum_probs=45.0

Q ss_pred             EEEEEeCCCcccccc----ccccc--ccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725        231 RLQLWDTAGQERFRS----LIPSY--IRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV  304 (355)
Q Consensus       231 ~~~i~D~~g~~~~~~----~~~~~--~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v  304 (355)
                      .+.++||+|......    .+..+  ....+-+++|.|.+....  .+. ......+..   -+--++++|.|-.  .  
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~--~~~-~~~~f~~~~---~~~~~I~TKlDe~--~--  163 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--ALS-VARAFDEKV---GVTGLVLTKLDGD--A--  163 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--HHH-HHHHHHHHT---CCCEEEEECGGGC--S--
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh--HHH-HHHHHHhhC---CCCeeEEeecCcc--c--
Confidence            456789999433322    11111  234567888888765532  221 222222211   1234889999942  2  


Q ss_pred             CHHHHHHHHhhcCcEEEEecCCCCCCHHHH
Q psy15725        305 STEEGERKAKELNVMFIETSAKAGYNVKQL  334 (355)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l  334 (355)
                      ....+.......+.|+.+++  .|++.+++
T Consensus       164 ~~G~~l~~~~~~~~Pi~~i~--~Gq~pedl  191 (207)
T d1ls1a2         164 RGGAALSARHVTGKPIYFAG--VSEKPEGL  191 (207)
T ss_dssp             SCHHHHHHHHHHCCCEEEEC--------CC
T ss_pred             cchHHHHHHHHHCCCEEEEe--CCCChhhc
Confidence            23444555667778887775  34444433

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=9.6e-06  Score=63.50  Aligned_cols=50  Identities=32%  Similarity=0.602  Sum_probs=45.7

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      ..|+++|+||+|+.+.+.+...+..+++...+++++++||.++.|+++++
T Consensus       109 ~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f  158 (167)
T d1z0ja1         109 SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELF  158 (167)
T ss_dssp             TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             cceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHH
Confidence            57999999999998888899999999999999999999999999988654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=4.8e-06  Score=65.53  Aligned_cols=51  Identities=45%  Similarity=0.549  Sum_probs=46.8

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVRL  232 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~~  232 (355)
                      ++|+++||||+|+...+.++.++..++++..+++++++||.++.++++++.
T Consensus       108 ~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~  158 (171)
T d2erxa1         108 SIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  158 (171)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             CCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHH
Confidence            899999999999988888999999999999999999999999999887553

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=8.7e-05  Score=58.00  Aligned_cols=120  Identities=28%  Similarity=0.519  Sum_probs=104.2

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccC
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV  304 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v  304 (355)
                      .+...+.+.+||++|+..+..+++.++.+++++++|||++++.+++.+..|+..+.... .++|+++|+||+|+...+..
T Consensus        47 ~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~  125 (170)
T d1i2ma_          47 TNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK  125 (170)
T ss_dssp             BTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT
T ss_pred             cccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh
Confidence            34457889999999999999999999999999999999999999999999999887665 68999999999999655433


Q ss_pred             CHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCCCC
Q psy15725        305 STEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDS  347 (355)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~~  347 (355)
                        .++..+++..++++++|||++|.||+++|++|++.+++..+
T Consensus       126 --~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         126 --AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN  166 (170)
T ss_dssp             --TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHTCTT
T ss_pred             --hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHccCCC
Confidence              34456777888999999999999999999999999876443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=3.5e-05  Score=61.17  Aligned_cols=150  Identities=21%  Similarity=0.246  Sum_probs=88.2

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEE
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW   90 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~   90 (355)
                      ...+||+++|++|||||||+|+|++......                 .....    + ........+..++  ..+.++
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~-----------------~~~~~----t-~~~~~~~~~~~~~--~~~~~~   61 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALV-----------------SPIPG----T-TRDPVDDEVFIDG--RKYVFV   61 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEE-----------------CCCC-----------CCEEEEETT--EEEEES
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCccee-----------------ecccc----c-ccccceeeeccCC--ceeeee
Confidence            3469999999999999999999998542110                 00000    0 0011112222333  457888


Q ss_pred             ecCCccccc------------ccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccc
Q psy15725         91 DTAGQERFR------------SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLS  158 (355)
Q Consensus        91 D~~g~~~~~------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
                      |+||.....            ......++.+|++++|+|++....-+ ...+...+..                      
T Consensus        62 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~----------------------  118 (186)
T d1mkya2          62 DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER----------------------  118 (186)
T ss_dssp             SCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----------------------
T ss_pred             ccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH----------------------
Confidence            888864322            23334467899999999998754322 2333333332                      


Q ss_pred             ccccCccccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh-----ccCeEEEEeeeeeccccce
Q psy15725        159 FHHANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~-----~~~~~~~~~sa~~~~~v~~  229 (355)
                                            .+.|+++|+||+|+.........+..+...     ....+++.+|+.++.++++
T Consensus       119 ----------------------~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~  172 (186)
T d1mkya2         119 ----------------------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR  172 (186)
T ss_dssp             ----------------------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHH
T ss_pred             ----------------------cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHH
Confidence                                  278999999999986443322222221111     1235788999999888764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=7.7e-06  Score=64.48  Aligned_cols=49  Identities=49%  Similarity=0.626  Sum_probs=45.4

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                      ++|+++|+||+|+.+.+.++.++..+++...+++++++|+.++.|++++
T Consensus       111 ~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1         111 DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             TSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            7999999999999888889989999999999999999999999998864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=1.7e-05  Score=61.37  Aligned_cols=144  Identities=20%  Similarity=0.250  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      +||+++|++|||||||+|+|++......                 ........     ......+.  .....+.+||++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~-----------------~~~~~~~~-----~~~~~~~~--~~~~~~~~~d~~   57 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIV-----------------TDIAGTTR-----DVLREHIH--IDGMPLHIIDTA   57 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCC-----------------CSSTTCCC-----SCEEEEEE--ETTEEEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEe-----------------eccccccc-----ceEeeeee--ccCceeeecccc
Confidence            7999999999999999999998543211                 11111111     11222222  233578899999


Q ss_pred             Ccccccc--------cccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         94 GQERFRS--------LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        94 g~~~~~~--------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      |..+...        ....++..+|++++++|..+..++.....|...++..                            
T Consensus        58 g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~----------------------------  109 (161)
T d2gj8a1          58 GLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL----------------------------  109 (161)
T ss_dssp             CCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS----------------------------
T ss_pred             ccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhc----------------------------
Confidence            9754332        2334567899999999999988887777776665532                            


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                                    ..+.|+++|+||+|+.++..       .+....+.+++.+||.++.+++.+
T Consensus       110 --------------~~~~~iilv~NK~Dl~~~~~-------~~~~~~~~~~~~iSAk~~~gi~~L  153 (161)
T d2gj8a1         110 --------------PAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVL  153 (161)
T ss_dssp             --------------CTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHH
T ss_pred             --------------ccccceeeccchhhhhhhHH-------HHHHhCCCcEEEEECCCCCCHHHH
Confidence                          23789999999999854321       122234578999999999887753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.1e-05  Score=63.28  Aligned_cols=50  Identities=40%  Similarity=0.650  Sum_probs=45.7

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      ++|+++|+||+|+...+.++.++...++...+++++++||.++.++++++
T Consensus       111 ~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f  160 (170)
T d1r2qa_         111 NIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF  160 (170)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             CceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHH
Confidence            68999999999998888899999999999999999999999999987653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=1.5e-05  Score=62.04  Aligned_cols=50  Identities=92%  Similarity=1.181  Sum_probs=45.3

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      ++|+++||||+|+.+.+.+..++..++++..+++++++||.++.++++++
T Consensus       105 ~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f  154 (164)
T d1yzqa1         105 DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF  154 (164)
T ss_dssp             SSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             CceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence            58999999999998888888889999999999999999999999988654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=9.4e-05  Score=57.75  Aligned_cols=55  Identities=27%  Similarity=0.495  Sum_probs=49.5

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      .+...+.+.+||++|.+.+..+++.++.+++++++|||++++.+++.+..|+..+
T Consensus        47 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i  101 (169)
T d1x1ra1          47 IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI  101 (169)
T ss_dssp             ETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             cccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHH
Confidence            3456788999999999999999999999999999999999999999988887654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.1e-05  Score=61.85  Aligned_cols=49  Identities=49%  Similarity=0.800  Sum_probs=44.7

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                      ++|++||+||+|+...+.+..++..++++..+++++++||.+|.|++++
T Consensus       108 ~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~  156 (173)
T d2a5ja1         108 NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA  156 (173)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             CCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            5799999999999888888888999999999999999999999998864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=1.1e-05  Score=63.22  Aligned_cols=49  Identities=53%  Similarity=0.760  Sum_probs=44.4

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeecc-ccceE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGY-NVKQV  230 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~-~v~~i  230 (355)
                      +.|+++||||+|+...+.++.+++.++++..+++++++||.++. |++++
T Consensus       106 ~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~  155 (168)
T d2atva1         106 NVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI  155 (168)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred             CcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHH
Confidence            79999999999998888899999999999999999999999886 57654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.39  E-value=3.5e-05  Score=60.59  Aligned_cols=22  Identities=36%  Similarity=0.724  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999987

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=0.00025  Score=59.63  Aligned_cols=69  Identities=22%  Similarity=0.303  Sum_probs=57.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      +...+.++||||+..|.......+.-+|.+|+|+|..++..-+...-|...- .   .++|.+++.||.|...
T Consensus        69 ~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~-~---~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          69 KDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE-K---YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             TTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHH-T---TTCCEEEEEECTTSTT
T ss_pred             CCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHH-H---cCCCEEEEEecccccc
Confidence            4567899999999999998888899999999999999998877655554333 3   5899999999999753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=2e-05  Score=61.85  Aligned_cols=50  Identities=44%  Similarity=0.694  Sum_probs=46.0

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      ..|+++|+||+|+...+.+..++..++++..+++++++|+.++.|+++++
T Consensus       110 ~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f  159 (171)
T d2erya1         110 EFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF  159 (171)
T ss_dssp             CCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             CCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHH
Confidence            79999999999998888899999999999999999999999999988643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.36  E-value=0.00021  Score=57.23  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=82.4

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCC-
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS-  305 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~-  305 (355)
                      .......+.|+||+..|.......+..+|++++|+|..++..-+.. +....+...  ...|+|++.||+|+..+.... 
T Consensus        63 ~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~  139 (196)
T d1d2ea3          63 TAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI--GVEHVVVYVNKADAVQDSEMVE  139 (196)
T ss_dssp             CSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCCEEEEEECGGGCSCHHHHH
T ss_pred             eceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHh--cCCcEEEEEecccccccHHHHH
Confidence            3456788999999999988777778899999999999988765442 222333332  245799999999986432211 


Q ss_pred             --HHHHHHHHhhc-----CcEEEEecCCCC----------CCHHHHHHHHHHHcCCC
Q psy15725        306 --TEEGERKAKEL-----NVMFIETSAKAG----------YNVKQLFRRVAAALPGM  345 (355)
Q Consensus       306 --~~~~~~~~~~~-----~~~~~~~SA~~~----------~gv~~l~~~l~~~i~~~  345 (355)
                        ..+...+....     .+|++++||++|          .|+.+||++|.+++|.+
T Consensus       140 ~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~P  196 (196)
T d1d2ea3         140 LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (196)
T ss_dssp             HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCCC
Confidence              11122222222     268999999998          59999999999999853

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=1.1e-05  Score=63.04  Aligned_cols=50  Identities=44%  Similarity=0.588  Sum_probs=45.2

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      ++|++|||||+|+...+.+...+...+++..+.+++++||.++.|+++++
T Consensus       108 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f  157 (167)
T d1kaoa_         108 KVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF  157 (167)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHH
T ss_pred             CCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHH
Confidence            79999999999998888888888999999999999999999999987643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00031  Score=54.40  Aligned_cols=54  Identities=30%  Similarity=0.409  Sum_probs=48.5

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      +...+.+.+||++|.+.+..++..++..++++++|||++++.+++.+..|+..+
T Consensus        48 ~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i  101 (167)
T d1xtqa1          48 NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL  101 (167)
T ss_dssp             TTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             CcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhh
Confidence            445788899999999999999999999999999999999999999988887655

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.00023  Score=55.60  Aligned_cols=52  Identities=48%  Similarity=0.921  Sum_probs=36.3

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      ...+.+.+||++|++.+..++..++.+++++|+|||++++.+++.+..|...
T Consensus        52 ~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~  103 (173)
T d2fu5c1          52 GKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN  103 (173)
T ss_dssp             TEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999888776555443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=3.7e-05  Score=59.91  Aligned_cols=50  Identities=42%  Similarity=0.671  Sum_probs=44.9

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      ..|++++|||+|+...+.+..++..++++..+++++++|++++.++++++
T Consensus       109 ~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f  158 (166)
T d1z0fa1         109 NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  158 (166)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             cceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            57999999999998888888888999999999999999999999988653

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00014  Score=63.32  Aligned_cols=69  Identities=20%  Similarity=0.232  Sum_probs=57.8

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  299 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  299 (355)
                      .+.+.+.++||||+..|.......+.-+|++++|+|+..+...+...-|.....    .++|++++.||+|..
T Consensus        93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH----cCCCeEEEEECcccc
Confidence            356788999999999999888888889999999999999988776555555443    589999999999963

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=0.00021  Score=55.65  Aligned_cols=49  Identities=45%  Similarity=0.849  Sum_probs=42.3

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK  274 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~  274 (355)
                      ....+.+.+||++|++.+..++..++..++++|+|||+++..++..+.+
T Consensus        50 ~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~   98 (169)
T d3raba_          50 NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD   98 (169)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHH
T ss_pred             ecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhh
Confidence            3446788999999999999999999999999999999999888765443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.00032  Score=55.89  Aligned_cols=47  Identities=51%  Similarity=0.899  Sum_probs=41.8

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQT  272 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~  272 (355)
                      +...+.+.+||++|++.+..+|..++.+++++|+|||+++..++..+
T Consensus        51 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~   97 (194)
T d2bcgy1          51 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV   97 (194)
T ss_dssp             TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred             eeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhH
Confidence            34567899999999999999999999999999999999988887654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.22  E-value=7.9e-05  Score=58.12  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=23.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++.++|++.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            45779999999999999999998866

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00039  Score=53.86  Aligned_cols=52  Identities=52%  Similarity=0.949  Sum_probs=39.3

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID  277 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~  277 (355)
                      +...+.+.+||++|+..++.++..++.+++++++|||++++.+++.+..|+.
T Consensus        48 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~   99 (167)
T d1z08a1          48 GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK   99 (167)
T ss_dssp             SSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHH
T ss_pred             CCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhh
Confidence            3446788999999999999999999999999999999999999988766653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00014  Score=56.48  Aligned_cols=51  Identities=47%  Similarity=0.927  Sum_probs=43.7

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWI  276 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~  276 (355)
                      +...+.+.+||++|++.+..++..++.+++++++|||.+++.+++.+..|.
T Consensus        47 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~   97 (166)
T d1g16a_          47 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWF   97 (166)
T ss_dssp             SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHH
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhh
Confidence            345677889999999999999999999999999999999998877654443

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=4.8e-05  Score=60.43  Aligned_cols=50  Identities=36%  Similarity=0.573  Sum_probs=45.8

Q ss_pred             ccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceEE
Q psy15725        182 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQVR  231 (355)
Q Consensus       182 ~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i~  231 (355)
                      .+|+++|+||+|+...+.+..++..++++..+++++++||.++.++++++
T Consensus       121 ~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f  170 (186)
T d2f7sa1         121 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAV  170 (186)
T ss_dssp             CCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHH
T ss_pred             CceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            79999999999999888899999999999999999999999999887643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00032  Score=54.62  Aligned_cols=53  Identities=47%  Similarity=0.888  Sum_probs=46.3

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDD  278 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~  278 (355)
                      +...+.+.+||++|++.+..+++.++.+++++++|+|+++..+++.+.+|...
T Consensus        50 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~  102 (171)
T d2ew1a1          50 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE  102 (171)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHH
T ss_pred             CCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhh
Confidence            34568899999999999999999999999999999999999998877666543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00012  Score=57.22  Aligned_cols=144  Identities=19%  Similarity=0.138  Sum_probs=86.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||+|+|++......                     +   ...+.+.......+......+.+||++|
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~---------------------~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g   57 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIV---------------------E---DEEGVTRDPVQDTVEWYGKTFKLVDTCG   57 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------------------------------CCSEEEEEETTEEEEEEECTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccee---------------------c---ccCceeeccccccccccccccccccccc
Confidence            699999999999999999987442111                     0   0001111111222334446789999999


Q ss_pred             ccccc---------ccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         95 QERFR---------SLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        95 ~~~~~---------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      .....         ......+..+|++++++|.++...... ..+...++..                            
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~----------------------------  108 (171)
T d1mkya1          58 VFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS----------------------------  108 (171)
T ss_dssp             TTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH----------------------------
T ss_pred             eeeeeccccccccccccccccccCcEEEEeecccccccccc-cccccccccc----------------------------
Confidence            53222         123334678999999999987654433 3344444432                            


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  229 (355)
                                      ++|+++|+||+|+.++.  ..+...++.+.....++.+|+.++.|++.
T Consensus       109 ----------------~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1         109 ----------------TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             ----------------TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHH
T ss_pred             ----------------cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHHH
Confidence                            78999999999985432  12222222222334567799999988775

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0003  Score=55.86  Aligned_cols=76  Identities=28%  Similarity=0.389  Sum_probs=64.7

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      +...+.+.+||++|++.+..++..++..++++++|||++++.+++.+.+|..........+.|+++|+||+|+...
T Consensus        47 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD  122 (191)
T ss_dssp             TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGC
T ss_pred             CCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEecccccccc
Confidence            3456788999999999999999999999999999999999999999987554444444478999999999998644

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00032  Score=54.76  Aligned_cols=53  Identities=30%  Similarity=0.530  Sum_probs=47.6

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      ...+.+.+||++|.+.+...+..++.+++++++|||+++..+++.+.+|...+
T Consensus        51 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i  103 (173)
T d2fn4a1          51 GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI  103 (173)
T ss_dssp             TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             CeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHH
Confidence            34688899999999999999999999999999999999999998887776655

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00022  Score=55.30  Aligned_cols=56  Identities=25%  Similarity=0.478  Sum_probs=50.3

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVR  280 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~  280 (355)
                      .+...+.+.+||++|.+.+...++.++.+++++++|||++++.+++.+..|+..+.
T Consensus        46 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~  101 (167)
T d1c1ya_          46 VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL  101 (167)
T ss_dssp             SSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred             eeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHH
Confidence            45567889999999999999999999999999999999999999999888887663

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.12  E-value=8.8e-05  Score=58.36  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -+|+|.|++|||||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999877

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0003  Score=54.74  Aligned_cols=47  Identities=49%  Similarity=0.880  Sum_probs=33.8

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSK  274 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~  274 (355)
                      ..+.+.+||++|++.+..++..++.+++++++|||+++..+++.+..
T Consensus        54 ~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~  100 (170)
T d2g6ba1          54 VKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA  100 (170)
T ss_dssp             EEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHH
T ss_pred             cEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhh
Confidence            45788999999999999999999999999999999999888765433

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00037  Score=54.56  Aligned_cols=54  Identities=41%  Similarity=0.914  Sum_probs=47.8

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      +...+.+.+||++|++.++.++..++..++++++|||+++..+++.+..|+..+
T Consensus        52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i  105 (177)
T d1x3sa1          52 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNEL  105 (177)
T ss_dssp             TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             eccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhh
Confidence            445778899999999999999999999999999999999999998887777654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00045  Score=53.29  Aligned_cols=54  Identities=43%  Similarity=0.786  Sum_probs=47.1

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      +...+...+||++|++.+..++..++++++++++|||+++..+++.+..|++.+
T Consensus        47 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i  100 (164)
T d1z2aa1          47 NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV  100 (164)
T ss_dssp             TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             cCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccc
Confidence            334678899999999999999999999999999999999999998887776543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.08  E-value=0.00035  Score=58.59  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=55.6

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  299 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  299 (355)
                      +...+.++||||+..|.......+.-+|++++|+|..++...+....|.. +.+   .++|.+++.||.|..
T Consensus        65 ~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~-~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          65 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTV-AER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECGGGC
T ss_pred             cccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHh-hhh---ccccccccccccccc
Confidence            35578899999999999888888999999999999998887766555543 333   589999999999963

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00033  Score=56.24  Aligned_cols=74  Identities=18%  Similarity=0.270  Sum_probs=51.1

Q ss_pred             cceEEEEEEeCCCccccccccccc----ccCCcEEEEEEeCCC-cccHHHHHHHHHH----HHhhcCCCceEEEEeeCCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSY----IRDSTVAVVVYDITN-ANSFHQTSKWIDD----VRTERGSDVIIMLVGNKTD  297 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~----~~~~~~vi~v~d~~~-~~s~~~~~~~~~~----i~~~~~~~~piilv~nK~D  297 (355)
                      .+...+.++|++|.+.+...+..+    ...++.+++++|+.+ ..++.....|+..    +......++|+++++||+|
T Consensus        43 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D  122 (209)
T d1nrjb_          43 YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSE  122 (209)
T ss_dssp             GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred             eCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeec
Confidence            334456799999988777655544    345578888888664 4566666555433    2333447899999999999


Q ss_pred             CCC
Q psy15725        298 LSD  300 (355)
Q Consensus       298 l~~  300 (355)
                      +.+
T Consensus       123 ~~~  125 (209)
T d1nrjb_         123 LFT  125 (209)
T ss_dssp             STT
T ss_pred             ccc
Confidence            864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.99  E-value=0.0002  Score=57.03  Aligned_cols=27  Identities=19%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+.+-++|+++|+|||||||+..+|..
T Consensus         2 ~~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           2 ASARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CSSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeEEEECCCCCCHHHHHHHHHH
Confidence            456779999999999999999999876

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.95  E-value=0.00014  Score=56.43  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..+|+++|++||||||++++|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999866

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.95  E-value=0.00045  Score=54.92  Aligned_cols=146  Identities=14%  Similarity=0.146  Sum_probs=80.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA   93 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~   93 (355)
                      .+|+++|++|||||||+|+|++.......                +.....   |.  +.  .......   .+.+.|++
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~----------------~~~~~~---t~--~~--~~~~~~~---~~~~~d~~   77 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLART----------------SSKPGK---TQ--TL--NFYIIND---ELHFVDVP   77 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC--------------------------------C--CE--EEEEETT---TEEEEECC
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEe----------------ecccce---ee--ec--ccccccc---cceEEEEE
Confidence            37999999999999999999984321100                000000   10  11  1111111   23345555


Q ss_pred             Cccc----------c---cccccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeecccccccccccccc
Q psy15725         94 GQER----------F---RSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFH  160 (355)
Q Consensus        94 g~~~----------~---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
                      +...          .   ..........+|++++++|++++..- ....+++.++..                       
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~-----------------------  133 (195)
T d1svia_          78 GYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY-----------------------  133 (195)
T ss_dssp             CBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT-----------------------
T ss_pred             eeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccc-cccccccccccc-----------------------
Confidence            5321          1   11222334567999999999875332 223344444332                       


Q ss_pred             ccCccccCccccccccccCCCccEEEEEeecCCCCcccceehh---hhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        161 HANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE---EGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~---~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                                           ++|+++|+||+|+.+.......   ....+......+++.+||.++.+++++
T Consensus       134 ---------------------~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el  185 (195)
T d1svia_         134 ---------------------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEA  185 (195)
T ss_dssp             ---------------------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHH
T ss_pred             ---------------------cCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHH
Confidence                                 7899999999998544332211   112222234567888999998887754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.90  E-value=0.00053  Score=53.16  Aligned_cols=54  Identities=28%  Similarity=0.545  Sum_probs=45.7

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      +...+.+.+||++|.+.+..++..++.+++++++|||+++..+++.+..|++.+
T Consensus        48 ~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i  101 (168)
T d1u8za_          48 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI  101 (168)
T ss_dssp             TTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHH
Confidence            345688899999999999999999999999999999999999999988888766

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0015  Score=53.03  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHhhhc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .+|-|--|+|||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            578899999999999999985

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00021  Score=55.30  Aligned_cols=20  Identities=30%  Similarity=0.526  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |+|+|.+|||||||++++..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            89999999999999999986

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00083  Score=52.63  Aligned_cols=75  Identities=25%  Similarity=0.470  Sum_probs=64.3

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD  300 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  300 (355)
                      +...+.+.+||++|++.+...++.++..++++++|||+++..+++.+..|..........+.|+++|+||+|+..
T Consensus        46 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~  120 (179)
T d1m7ba_          46 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT  120 (179)
T ss_dssp             SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred             cceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccc
Confidence            446788899999999999999999999999999999999999999988765554444447999999999999853

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.00025  Score=55.71  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +||+|+|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988766

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.83  E-value=0.00027  Score=56.07  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +.++|+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.0008  Score=52.32  Aligned_cols=56  Identities=45%  Similarity=0.781  Sum_probs=41.4

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER  283 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~  283 (355)
                      ....+.+||++|++.+...+..++..+++++++||+++..+++.+..|+..+....
T Consensus        50 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~  105 (175)
T d1ky3a_          50 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA  105 (175)
T ss_dssp             CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             ccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhh
Confidence            45677899999999999999999999999999999999999999999999987754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00085  Score=52.84  Aligned_cols=75  Identities=31%  Similarity=0.422  Sum_probs=63.5

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCc
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  301 (355)
                      ...+.+.+||++|++.+..++..++..++++++|||++++.+++++..|...+.+....++|+++|+||+|+.+.
T Consensus        54 ~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~  128 (185)
T d2atxa1          54 GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD  128 (185)
T ss_dssp             SCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred             CceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccc
Confidence            346788999999999999999999999999999999999999998765544443333478999999999999654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.75  E-value=0.0013  Score=50.98  Aligned_cols=113  Identities=22%  Similarity=0.356  Sum_probs=92.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC-CCceEEEEeeCCCCCCcccCCH
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ..+.+.+||++|.+.++..+..++..++++++|||+++..++..+..|...+..... .++|+++++||+|+.+...  .
T Consensus        58 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~  135 (176)
T d1fzqa_          58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--A  135 (176)
T ss_dssp             TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--H
T ss_pred             CCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--H
Confidence            357789999999999999999999999999999999999999998887777654333 6899999999999964432  2


Q ss_pred             HHHHH-----HHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        307 EEGER-----KAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       307 ~~~~~-----~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ....+     .++...+++++|||++|.||+++|+||++.|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         136 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence            22211     2234557899999999999999999999865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.72  E-value=0.00036  Score=54.95  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++|+++|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988876

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0013  Score=50.98  Aligned_cols=52  Identities=48%  Similarity=0.881  Sum_probs=45.1

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWID  277 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~  277 (355)
                      +.....+.+||++|++.+..++..++..++++++|||.++..++..+..|..
T Consensus        50 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~  101 (174)
T d2bmea1          50 GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT  101 (174)
T ss_dssp             TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred             cCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhc
Confidence            3456788999999999999999999999999999999999988877655554

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.70  E-value=0.00038  Score=54.72  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +||+++|+|||||||+.++|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999876

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.69  E-value=0.00032  Score=55.62  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++|+++|++||||||++..|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988766

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.69  E-value=0.00037  Score=52.84  Aligned_cols=20  Identities=20%  Similarity=0.448  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |++.|.+|||||||+++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999876

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.001  Score=56.01  Aligned_cols=67  Identities=18%  Similarity=0.102  Sum_probs=41.8

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEe
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD   91 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D   91 (355)
                      |-.=|.|+|+.++|||+|+|+|++....-.                  .-......|.|+-.+...+ .++....+.++|
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~------------------~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lD   91 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFS------------------LGSTVQSHTKGIWMWCVPH-PKKPGHILVLLD   91 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSC------------------CCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCc------------------cCCCCCCCCCceEEEEeec-cCCCCceEEEEe
Confidence            456789999999999999999998542110                  1111122344544333332 234556788999


Q ss_pred             cCCccc
Q psy15725         92 TAGQER   97 (355)
Q Consensus        92 ~~g~~~   97 (355)
                      |.|...
T Consensus        92 teG~~~   97 (277)
T d1f5na2          92 TEGLGD   97 (277)
T ss_dssp             ECCBCC
T ss_pred             cccccc
Confidence            999643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00044  Score=54.18  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +||+++|+|||||||+.++|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988866

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00046  Score=54.20  Aligned_cols=23  Identities=17%  Similarity=0.403  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++|+++|+|||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999998876

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0012  Score=51.32  Aligned_cols=119  Identities=38%  Similarity=0.683  Sum_probs=108.1

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCCcccCCH
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST  306 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~  306 (355)
                      ...+.+.+||++|++.+...+..++..++++++|||.+++.++..+.+|+..+......++|+++|+||+|+.+.+....
T Consensus        50 ~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~  129 (175)
T d2f9la1          50 GKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT  129 (175)
T ss_dssp             TEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH
T ss_pred             CEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchH
Confidence            35678899999999999999999999999999999999999999999999999887778899999999999987777777


Q ss_pred             HHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        307 EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       307 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      +......+..+.++++|||++|.||+++|++|++.+.+.
T Consensus       130 ~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~  168 (175)
T d2f9la1         130 DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI  168 (175)
T ss_dssp             HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            777888888889999999999999999999999987543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.56  E-value=0.00067  Score=53.83  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..-|+++|+|||||||++++|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999876

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.50  E-value=0.00058  Score=52.72  Aligned_cols=20  Identities=25%  Similarity=0.498  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |.|+|.+|||||||++++..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            36999999999999999986

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.48  E-value=0.00061  Score=52.56  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |++.|++||||||+.++|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999876

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.0006  Score=54.67  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      =|+++|.||||||||.++|..
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00061  Score=53.11  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +|++.|++|+|||||+.++..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999886

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.39  E-value=0.0058  Score=47.24  Aligned_cols=112  Identities=19%  Similarity=0.242  Sum_probs=81.9

Q ss_pred             eEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh-hcCCCceEEEEeeCCCCCCcccCCHH
Q psy15725        229 QVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT-ERGSDVIIMLVGNKTDLSDKRQVSTE  307 (355)
Q Consensus       229 ~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~v~~~  307 (355)
                      ......+++.+...+...+..++...+.+++++|+++...+.....+...... ....+.|+++++||.|+...  +...
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~  133 (186)
T d1f6ba_          56 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEE  133 (186)
T ss_dssp             TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHH
T ss_pred             ccccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHH
Confidence            45677889999998888999999999999999999999888776554444333 33378999999999998532  2222


Q ss_pred             HHHHHH-----------------hhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        308 EGERKA-----------------KELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       308 ~~~~~~-----------------~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      ......                 ...++++++|||++|+||+|+|+||.++|
T Consensus       134 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         134 RLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             HHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            222221                 12346799999999999999999999876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0019  Score=49.64  Aligned_cols=54  Identities=26%  Similarity=0.511  Sum_probs=48.2

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHH
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDV  279 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i  279 (355)
                      +...+.+.+||++|.+.+...+..++..++++++|+|+++..+++.+..|+..+
T Consensus        47 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i  100 (166)
T d1ctqa_          47 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI  100 (166)
T ss_dssp             TTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred             eceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999999999888887655

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.00093  Score=52.04  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..=|+++|.+||||||+..++..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999865

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.00081  Score=51.25  Aligned_cols=21  Identities=14%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +|+++|++||||||+...|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988766

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.23  E-value=0.0078  Score=46.84  Aligned_cols=120  Identities=35%  Similarity=0.592  Sum_probs=101.2

Q ss_pred             ccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC----CCceEEEEeeCCCCCCc
Q psy15725        226 NVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSDK  301 (355)
Q Consensus       226 ~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~  301 (355)
                      ....+...+||++|...+...+..++..++++++++|.++..+++.+..|++.+.....    .++|+++|+||+|+.+ 
T Consensus        47 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-  125 (184)
T d1vg8a_          47 DDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-  125 (184)
T ss_dssp             SSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-
T ss_pred             CCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-
Confidence            33456788999999999999999999999999999999999999999999988866432    4689999999999864 


Q ss_pred             ccCCHHHHHHHHh-hcCcEEEEecCCCCCCHHHHHHHHHHHcCCCC
Q psy15725        302 RQVSTEEGERKAK-ELNVMFIETSAKAGYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       302 ~~v~~~~~~~~~~-~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~~  346 (355)
                      +.+...+...++. ..++++++|||++|.||+++|++|++.+.+.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~  171 (184)
T d1vg8a_         126 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE  171 (184)
T ss_dssp             CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhcc
Confidence            4566666666654 45689999999999999999999999887643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0012  Score=52.16  Aligned_cols=21  Identities=24%  Similarity=0.608  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChhHHHHHhhhc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~   36 (355)
                      |+++|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999774

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0013  Score=54.08  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +|+|+|+.|+|||||++-+.+
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999988877

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.13  E-value=0.002  Score=49.46  Aligned_cols=116  Identities=19%  Similarity=0.327  Sum_probs=93.0

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc-CCCceEEEEeeCCCCCCccc--
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQ--  303 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~--  303 (355)
                      .+.+.+.+||++|++.+...|..++..++++++|||+++..+++....|+..+.... ..++|+++|+||.|+.....  
T Consensus        44 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~  123 (164)
T d1zd9a1          44 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK  123 (164)
T ss_dssp             ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHH
T ss_pred             eeeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHH
Confidence            346788999999999999999999999999999999999999999888877765543 37899999999999863321  


Q ss_pred             -CCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        304 -VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       304 -v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                       +........++..+++++++||++|.||+++|+||++.+
T Consensus       124 ~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         124 ELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence             111111122334567999999999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0015  Score=51.68  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +.|+++|+|||||||+..+|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998876

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.016  Score=51.11  Aligned_cols=109  Identities=14%  Similarity=0.134  Sum_probs=65.7

Q ss_pred             EEEEeCCCcccccc-----cccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCCCCCC------
Q psy15725        232 LQLWDTAGQERFRS-----LIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD------  300 (355)
Q Consensus       232 ~~i~D~~g~~~~~~-----~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~------  300 (355)
                      +.+|||||-.....     +....+..+|.++++.|..  .+-.+ .+..+.+..   .++|+++|.||+|...      
T Consensus       109 ~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~--~~~~d-~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~  182 (400)
T d1tq4a_         109 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATR--FKKND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADG  182 (400)
T ss_dssp             EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSC--CCHHH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTT
T ss_pred             EEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCC--CCHHH-HHHHHHHHH---cCCCEEEEEeCcccccchhhhc
Confidence            56999999443221     1223356778888876533  23222 244555555   5899999999999621      


Q ss_pred             -cccCCHHHH--------HHHHhhcC---cEEEEecCCC--CCCHHHHHHHHHHHcCCCC
Q psy15725        301 -KRQVSTEEG--------ERKAKELN---VMFIETSAKA--GYNVKQLFRRVAAALPGMD  346 (355)
Q Consensus       301 -~~~v~~~~~--------~~~~~~~~---~~~~~~SA~~--~~gv~~l~~~l~~~i~~~~  346 (355)
                       +.....+..        ....+..+   -++|.+|+..  ..|+++|.+.+.+.++..+
T Consensus       183 ~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         183 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence             111111111        11122223   2688998764  5599999999999998754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.07  E-value=0.0013  Score=51.33  Aligned_cols=20  Identities=30%  Similarity=0.270  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |+|.|.+||||||++++|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999998865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.07  E-value=0.0019  Score=49.97  Aligned_cols=25  Identities=16%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+-+-|.++|.+||||||+..+|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3447899999999999999877764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.0015  Score=51.25  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChhHHHHHhhhc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~   36 (355)
                      |+++|++|||||||+++|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999998763

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.98  E-value=0.0014  Score=50.40  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +|+++|.+||||||+...+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0016  Score=50.92  Aligned_cols=20  Identities=30%  Similarity=0.625  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |+++|++||||+||+++|+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999886

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.95  E-value=0.0022  Score=50.51  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++=|+|-|++|||||||.++|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.94  E-value=0.0013  Score=50.58  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +|+++|.+||||||+...+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999887755

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.93  E-value=0.0017  Score=50.79  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=18.2

Q ss_pred             eEEE-EEcCCCCChhHHHHHhhh
Q psy15725         14 FKLV-FLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~-vvG~~~vGKStLl~~l~~   35 (355)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3565 569999999999998865

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.93  E-value=0.0018  Score=53.67  Aligned_cols=21  Identities=14%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +++++|++|+|||||++-+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            699999999999999988876

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.87  E-value=0.002  Score=52.99  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988876

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0021  Score=53.20  Aligned_cols=21  Identities=14%  Similarity=0.301  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999988877

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.002  Score=49.54  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |+++|.+||||||+.++|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66799999999999999876

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.83  E-value=0.002  Score=49.69  Aligned_cols=20  Identities=20%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |++.|++||||||+.+.+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999988866

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.002  Score=50.93  Aligned_cols=20  Identities=25%  Similarity=0.604  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |+++|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999876

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.002  Score=51.62  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChhHHHHHhhhc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~   36 (355)
                      |+++|++|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.012  Score=45.17  Aligned_cols=57  Identities=35%  Similarity=0.658  Sum_probs=51.1

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhc
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTER  283 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~  283 (355)
                      ...+...+||++|.......+..++..++++++++|.++..+++.+..|++.+....
T Consensus        52 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~  108 (174)
T d1wmsa_          52 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA  108 (174)
T ss_dssp             TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             CceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHh
Confidence            346778899999999999999999999999999999999999999999999887754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.78  E-value=0.0021  Score=51.20  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            378999999999999998877

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.0024  Score=53.79  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|+.|+|||||++-+.+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            589999999999999998887

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.75  E-value=0.0022  Score=52.12  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|++|||||||++-+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            479999999999999987766

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.74  E-value=0.0025  Score=51.44  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +.+.|+|-|++||||||+..+|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999988876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0025  Score=51.90  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|+.|+|||||++-+.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            489999999999999998777

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.67  E-value=0.0024  Score=50.45  Aligned_cols=20  Identities=15%  Similarity=0.348  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |+++|+|||||||+..+|..
T Consensus        11 I~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999877

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0029  Score=49.89  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++||+||||||+++..+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            4799999999999999988876

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.65  E-value=0.0026  Score=48.94  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChhHHHHHhhhc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~   36 (355)
                      |++.|.+||||||+.++|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            666799999999999998773

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.60  E-value=0.0034  Score=48.45  Aligned_cols=20  Identities=15%  Similarity=0.351  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |+++|.+||||||+.+.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999988765

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.58  E-value=0.0022  Score=53.05  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +++++|+.|+|||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            689999999999999987766

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.004  Score=49.16  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      --|+++|+|||||||+..+|..
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999876

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.52  E-value=0.0031  Score=51.45  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -++++|+.|+|||||++-+.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3678999999999999988873

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0019  Score=50.78  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=21.7

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..+-+.|.++|.+||||||+.+.|..
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457799999999999999988865

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.48  E-value=0.003  Score=52.49  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -|++.|+||+|||||..++...
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998774

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.47  E-value=0.0033  Score=51.32  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -++++|+.|+|||||++-+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4899999999999999988773

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0036  Score=52.09  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++||+||||||+|++.|..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            4799999999999999999876

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.42  E-value=0.0053  Score=48.03  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=88.4

Q ss_pred             cccceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccH-----------HHHHHHHHHHHhhcCCCceEEEEe
Q psy15725        225 YNVKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSF-----------HQTSKWIDDVRTERGSDVIIMLVG  293 (355)
Q Consensus       225 ~~v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~-----------~~~~~~~~~i~~~~~~~~piilv~  293 (355)
                      .+...+.+.+||++|++.++..|..++..++++++|+|+++..++           +....|...+.+....+.|+++++
T Consensus        37 ~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~  116 (195)
T d1svsa1          37 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL  116 (195)
T ss_dssp             EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEE
T ss_pred             EEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEe
Confidence            345678899999999999999999999999999999999877655           223345555555545789999999


Q ss_pred             eCCCCCCc---------------ccCCHHHHHH-----HHh------hcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        294 NKTDLSDK---------------RQVSTEEGER-----KAK------ELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       294 nK~Dl~~~---------------~~v~~~~~~~-----~~~------~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                      ||+|+...               ......++..     +..      ...+++++|||++|.||+++|+.+.+.|.+
T Consensus       117 Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             ECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            99996311               0111122111     111      134688899999999999999999988764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0035  Score=51.26  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|++|||||||++-+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            479999999999999988877

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.38  E-value=0.0037  Score=51.07  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|+.|+|||||++-+.+
T Consensus        31 ~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            489999999999999998877

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0027  Score=51.81  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            378999999999999999887

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.31  E-value=0.0027  Score=51.50  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -++++|+.|+|||||++-+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3799999999999999998883

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.23  E-value=0.0043  Score=50.85  Aligned_cols=21  Identities=19%  Similarity=0.395  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|+.|+|||||++.+.+
T Consensus        34 i~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            378999999999999999888

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.16  E-value=0.0046  Score=50.58  Aligned_cols=22  Identities=18%  Similarity=0.231  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -++++|+.|+|||||++-+.+-
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998884

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.11  E-value=0.0072  Score=49.70  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +...|++.|++|+|||+|++++..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            446799999999999999999876

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.11  E-value=0.0059  Score=48.09  Aligned_cols=27  Identities=22%  Similarity=0.413  Sum_probs=23.0

Q ss_pred             CCcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725          9 NPLRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus         9 ~~~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +..+.+-|+|-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            444568899999999999999998865

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.09  E-value=0.0049  Score=51.05  Aligned_cols=21  Identities=14%  Similarity=0.468  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++|+.|+|||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            489999999999999998877

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.09  E-value=0.0097  Score=45.76  Aligned_cols=115  Identities=20%  Similarity=0.387  Sum_probs=92.1

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh-hcCCCceEEEEeeCCCCCCcc---c
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT-ERGSDVIIMLVGNKTDLSDKR---Q  303 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~---~  303 (355)
                      ..+...+||++|...++..+..++..++++++|+|+++..++..+.+|+..... ....++|+++++||+|+.+..   +
T Consensus        54 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~  133 (173)
T d1e0sa_          54 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE  133 (173)
T ss_dssp             TTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH
T ss_pred             cceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHH
Confidence            456788999999999999999999999999999999999999998887766544 334689999999999986332   1


Q ss_pred             CCHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHHHHc
Q psy15725        304 VSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  342 (355)
Q Consensus       304 v~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i  342 (355)
                      +....+...++..++++++|||++|+||+|+|+||.+.+
T Consensus       134 i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         134 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             HHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            221212223344568899999999999999999999876

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.07  E-value=0.011  Score=44.93  Aligned_cols=116  Identities=16%  Similarity=0.276  Sum_probs=92.8

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcccHHHHHHHHHHHHh-hcCCCceEEEEeeCCCCCCcccCC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRT-ERGSDVIIMLVGNKTDLSDKRQVS  305 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~v~  305 (355)
                      .+.+.+.+||++|++.++..+..++..++++++++|+++..++.....++..... ....++|+++|+||+|+.+...+ 
T Consensus        43 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-  121 (165)
T d1ksha_          43 HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC-  121 (165)
T ss_dssp             ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-
T ss_pred             ccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH-
Confidence            3467889999999999999999999999999999999999999887766655433 33478999999999999644333 


Q ss_pred             HHHHHHH-----HhhcCcEEEEecCCCCCCHHHHHHHHHHHcCC
Q psy15725        306 TEEGERK-----AKELNVMFIETSAKAGYNVKQLFRRVAAALPG  344 (355)
Q Consensus       306 ~~~~~~~-----~~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~  344 (355)
                       .+....     .+...+++++|||++|.||+++|+||.+.+.+
T Consensus       122 -~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         122 -NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             -HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence             222222     12335789999999999999999999998765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.98  E-value=0.0054  Score=50.02  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+++.|+||+|||||++.+.+
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.94  E-value=0.0052  Score=52.74  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+|+|.|+.|||||||++.|+.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCEEEEeeccccchHHHHHHhh
Confidence            4699999999999999999987

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.92  E-value=0.0059  Score=50.48  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChhHHHHHhhhc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~   36 (355)
                      ++++|+.|+|||||++.+.+.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            789999999999999998883

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.89  E-value=0.006  Score=49.66  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+++.|+||+||||+.+.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999998876

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.78  E-value=0.0036  Score=51.14  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++++|++|+|||||++-+.+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            489999999999999998877

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0083  Score=47.92  Aligned_cols=23  Identities=22%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+-|+|-|.+|||||||.++|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36699999999999999998865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.70  E-value=0.007  Score=50.06  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .|+|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            588999999999999999876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.63  E-value=0.0081  Score=49.55  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.+++.|++|+|||++++.+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998876

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.53  E-value=0.0091  Score=48.31  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++++.|++|+|||||+..+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998876

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.46  E-value=0.0086  Score=51.03  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.|+++||||||||.|.+++..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999999877

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.40  E-value=0.01  Score=48.66  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -.+++.|++|+||||++..+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.0095  Score=47.66  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChhHHHHHhhhc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~   36 (355)
                      |+|.|+|||||||+...|...
T Consensus         6 I~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            677799999999999888773

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.10  E-value=0.013  Score=44.90  Aligned_cols=51  Identities=16%  Similarity=0.082  Sum_probs=36.0

Q ss_pred             CCCccEEEEEeecCCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccce
Q psy15725        179 RGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQ  229 (355)
Q Consensus       179 ~~~~~piilv~nK~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  229 (355)
                      .....|+++|+||+|+.....   +........+...+.+++++||.++.++++
T Consensus       113 ~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1         113 DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             cccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            346899999999999865432   222222333445668899999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.98  E-value=0.01  Score=49.16  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=17.3

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      +++.|+||+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            45569999999999999876

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.80  E-value=0.014  Score=47.81  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .|++.|++|+|||+|++++..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            599999999999999999987

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.79  E-value=0.016  Score=45.84  Aligned_cols=21  Identities=19%  Similarity=0.359  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.75  E-value=0.025  Score=42.70  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      ..-|++-|+=|+|||||+..+...-
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            3458899999999999999988743

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.72  E-value=0.022  Score=44.42  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+=|+|.|.+||||||+++-|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999987754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.63  E-value=0.046  Score=41.01  Aligned_cols=55  Identities=20%  Similarity=0.284  Sum_probs=40.5

Q ss_pred             cccCCCccEEEEEeecCCCCcccc---eehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        176 RTERGSDVIIMLVGNKTDLSDKRQ---VSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       176 ~~~~~~~~piilv~nK~D~~~~~~---v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                      ........|+++++||.|+.+...   +.......++.....+++++||.++.|++++
T Consensus       100 ~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_         100 EEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             TCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            334556899999999999975432   3333344566667889999999999998864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.60  E-value=0.016  Score=47.81  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.|++.|+||+|||+|++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4699999999999999999887

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.53  E-value=0.012  Score=51.71  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -++++||+||||||+|++.|..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            3579999999999999876654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.47  E-value=0.018  Score=47.53  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.+++.|+||+|||+|++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3599999999999999999876

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.37  E-value=0.015  Score=47.52  Aligned_cols=22  Identities=18%  Similarity=0.381  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      ++++.|++|+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999888774

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.017  Score=46.38  Aligned_cols=21  Identities=38%  Similarity=0.569  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++++.|++|+||||++..+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            489999999999999999877

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.28  E-value=0.02  Score=46.20  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++++.|++|+|||||+..+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            389999999999999988876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.26  E-value=0.018  Score=46.25  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999988765

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.04  E-value=0.028  Score=44.68  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +..-|.+.|.+|||||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.04  E-value=0.026  Score=50.37  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ...-+|+++||+|||||-|.++|..
T Consensus        47 i~ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          47 VTPKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccccEEEECCCCCCHHHHHHHHHH
Confidence            3344899999999999999999876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.032  Score=47.15  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=21.4

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -..+=|+|.|++|||||||.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            3458899999999999999888765

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.98  E-value=0.013  Score=50.27  Aligned_cols=21  Identities=14%  Similarity=0.458  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +|+++|++|+|||+|+.++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            599999999999999998865

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.025  Score=44.59  Aligned_cols=22  Identities=23%  Similarity=0.298  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      =+.|.|++|+|||+|+.+|..+
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999998874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.72  E-value=0.011  Score=45.79  Aligned_cols=150  Identities=17%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|.+|||||||+|+|++......                 +....+..++++.       ........+.+|||||
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~-----------------~~~~~t~~~~~~~-------~~~~~~~~~~~~DtpG   58 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIA-----------------PYPFTTLSPNLGV-------VEVSEEERFTLADIPG   58 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEEC-----------------CCTTCSSCCEEEE-------EECSSSCEEEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcee-----------------ccCCCceeeeece-------eeecCCCeEEEcCCCe
Confidence            499999999999999999987432110                 1111111222221       1122334688999999


Q ss_pred             cccc----ccc---ccccccCccEEEEEEECCCcchhhhHHHHHHHHhhhcCCceEEeeccccccccccccccccCcccc
Q psy15725         95 QERF----RSL---IPSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGSIETNFTHLSFHHANSFHQ  167 (355)
Q Consensus        95 ~~~~----~~~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (355)
                      ....    ...   ....+..+|++++++|..... +..+..|...+....                             
T Consensus        59 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~-----------------------------  108 (180)
T d1udxa2          59 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEP-LKTLETLRKEVGAYD-----------------------------  108 (180)
T ss_dssp             CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCH-HHHHHHHHHHHHHHC-----------------------------
T ss_pred             eecCchHHHHHHHHHHHHHHhhhhhhhhccccccc-ccchhhhhhhhhccc-----------------------------
Confidence            5321    112   223467889999999987642 233333333322110                             


Q ss_pred             CccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhhccCeEEEEeeeeeccccceE
Q psy15725        168 TSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       168 ~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~~~sa~~~~~v~~i  230 (355)
                                ....++|+++|+||+|+..+..+  .+..+.....+.+++.+|+.++.|++.+
T Consensus       109 ----------~~~~~~p~iiv~NK~D~~~~~~~--~~~~~~~~~~~~~~~~iSA~tg~gid~L  159 (180)
T d1udxa2         109 ----------PALLRRPSLVALNKVDLLEEEAV--KALADALAREGLAVLPVSALTGAGLPAL  159 (180)
T ss_dssp             ----------HHHHHSCEEEEEECCTTSCHHHH--HHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             ----------cccchhhhhhhhhhhhhhhHHHH--HHHHHHHHhcCCeEEEEEcCCCCCHHHH
Confidence                      11136899999999999664432  2233344456789999999999988764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.67  E-value=0.024  Score=46.95  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ...|++.|++|+|||+|++++..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHH
Confidence            34699999999999999999987

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.028  Score=44.60  Aligned_cols=20  Identities=25%  Similarity=0.303  Sum_probs=18.0

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999988765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.022  Score=46.05  Aligned_cols=21  Identities=19%  Similarity=0.396  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .|+|-|..||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.64  E-value=0.028  Score=46.89  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .-|+|+|.+|+|||||+..+.+
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998876

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.47  E-value=0.036  Score=42.58  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .=|++.|++|+|||||.-+|...
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            45899999999999999998874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=92.44  E-value=0.036  Score=48.05  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++.--+++.|+||+|||+|++.+.+
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999999887

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.36  E-value=0.031  Score=45.10  Aligned_cols=22  Identities=23%  Similarity=0.307  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      -++|.|++|+|||+|+.+|...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999998763

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.035  Score=44.14  Aligned_cols=20  Identities=20%  Similarity=0.396  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |++-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77789999999998887755

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.06  E-value=0.024  Score=47.28  Aligned_cols=21  Identities=14%  Similarity=0.275  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      =|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            399999999999999998765

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.01  E-value=0.045  Score=42.06  Aligned_cols=23  Identities=13%  Similarity=0.366  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .=|++.|++|+|||||.-+|...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45899999999999999998873

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.80  E-value=0.0088  Score=46.93  Aligned_cols=19  Identities=21%  Similarity=0.485  Sum_probs=17.1

Q ss_pred             EEEcCCCCChhHHHHHhhh
Q psy15725         17 VFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        17 ~vvG~~~vGKStLl~~l~~   35 (355)
                      +++|+.|+|||||+.++..
T Consensus        28 vi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            5789999999999999975

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.68  E-value=0.059  Score=44.88  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.1

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..+=|.|-|.+|||||||...+..
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHH
Confidence            347789999999999999887654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.68  E-value=0.042  Score=44.55  Aligned_cols=23  Identities=26%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      --++|.|++|+|||+|.-+|..+
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            34789999999999999998864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.63  E-value=0.24  Score=40.39  Aligned_cols=79  Identities=11%  Similarity=-0.003  Sum_probs=44.9

Q ss_pred             ceEEEEEEeCCCccccc-------ccc--cccccCCcEEEEEEeCCCcccHHHHHHHHHHHHhhcC--CCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFR-------SLI--PSYIRDSTVAVVVYDITNANSFHQTSKWIDDVRTERG--SDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~-------~~~--~~~~~~~~~vi~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~  296 (355)
                      ....+.++||||-....       ...  .......+++++|++.+...-.......+..+.....  .-.++++|+||+
T Consensus        78 ~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~  157 (257)
T d1h65a_          78 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA  157 (257)
T ss_dssp             TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred             ccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECc
Confidence            45678899999932111       111  1223466888999887654321222233333333221  235799999999


Q ss_pred             CCCCcccCCH
Q psy15725        297 DLSDKRQVST  306 (355)
Q Consensus       297 Dl~~~~~v~~  306 (355)
                      |...++....
T Consensus       158 D~~~~~~~~~  167 (257)
T d1h65a_         158 QFSPPDGLPY  167 (257)
T ss_dssp             SCCCGGGCCH
T ss_pred             ccCCcCCCcH
Confidence            9876554443

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.62  E-value=0.063  Score=42.29  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +-|+|.|..||||||+++-|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999987754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.45  E-value=0.035  Score=46.64  Aligned_cols=19  Identities=21%  Similarity=0.548  Sum_probs=17.1

Q ss_pred             EEEcCCCCChhHHHHHhhh
Q psy15725         17 VFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        17 ~vvG~~~vGKStLl~~l~~   35 (355)
                      +++|+.|+||||++.++..
T Consensus        28 vlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEECCTTTCSTHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            6889999999999998855

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.065  Score=42.33  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +-|+|.|..||||||+++-|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4588999999999999987765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=91.30  E-value=0.06  Score=41.04  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .-|++.|++|+|||||.-.+...
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            45899999999999999888774

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.26  E-value=0.049  Score=43.94  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      --++|.|+||+|||+|+.++..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            45789999999999999999875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.69  E-value=0.062  Score=42.75  Aligned_cols=20  Identities=25%  Similarity=0.346  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      +.+.|++|+|||-|++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999877

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.52  E-value=0.059  Score=42.13  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=22.5

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+++--+++.|++++|||+|++++..
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHH
Confidence            34566799999999999999999877

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.065  Score=43.20  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=90.46  E-value=0.064  Score=43.08  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhcC
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYDS   37 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~~   37 (355)
                      --++|.|++|+|||+|+.++..+-
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            347889999999999999998754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.21  E-value=0.067  Score=46.32  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +.-+|+++|+.|||||-|..+|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            445699999999999999998865

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=90.16  E-value=0.076  Score=44.94  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .+++.|+||+|||.|.+.+..
T Consensus       125 ~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            355679999999999999877

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.91  E-value=0.087  Score=44.85  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=22.3

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..-++|+|=|.-||||||+++.|..
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999876

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.69  E-value=0.11  Score=44.02  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +.-.++++|++|||||.|...+..
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHh
Confidence            334689999999999999998776

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.63  E-value=0.082  Score=41.96  Aligned_cols=20  Identities=20%  Similarity=0.272  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      |++=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999988765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.082  Score=42.67  Aligned_cols=23  Identities=26%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHhhhc
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      --++|.|++|+|||+|..+|..+
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999863

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.47  E-value=0.15  Score=40.59  Aligned_cols=119  Identities=17%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             cceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCcc----------cHHHHHHHHHH-HHhhcCCCceEEEEeeC
Q psy15725        227 VKQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNAN----------SFHQTSKWIDD-VRTERGSDVIIMLVGNK  295 (355)
Q Consensus       227 v~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~----------s~~~~~~~~~~-i~~~~~~~~piilv~nK  295 (355)
                      .+.+.+.+||++|++.++..|..++.+++++++++|+++..          .+.+...++.. +.+....++|++|++||
T Consensus        44 ~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK  123 (221)
T d1azta2          44 VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNK  123 (221)
T ss_dssp             ETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             ECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEech
Confidence            45678899999999999999999999999999999987532          23333333444 44333478999999999


Q ss_pred             CCCCCccc----CC--------------------------HHHHHHHH-----h---h-----cCcEEEEecCCCCCCHH
Q psy15725        296 TDLSDKRQ----VS--------------------------TEEGERKA-----K---E-----LNVMFIETSAKAGYNVK  332 (355)
Q Consensus       296 ~Dl~~~~~----v~--------------------------~~~~~~~~-----~---~-----~~~~~~~~SA~~~~gv~  332 (355)
                      +|+.+.+.    ..                          ...+..+.     +   .     ..+..+++||+++.||+
T Consensus       124 ~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~  203 (221)
T d1azta2         124 QDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR  203 (221)
T ss_dssp             HHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHH
T ss_pred             hhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHH
Confidence            99842210    00                          11122221     1   1     23667899999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy15725        333 QLFRRVAAALPGM  345 (355)
Q Consensus       333 ~l~~~l~~~i~~~  345 (355)
                      .+|+.+.+.|...
T Consensus       204 ~vf~~v~d~I~~~  216 (221)
T d1azta2         204 RVFNDCRDIIQRM  216 (221)
T ss_dssp             HHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988877644

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.30  E-value=0.076  Score=46.49  Aligned_cols=22  Identities=18%  Similarity=0.584  Sum_probs=18.1

Q ss_pred             eeEEEEEcCCCCChhHHHHHhhh
Q psy15725         13 KFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        13 ~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++ +|+|+.|+|||+++.++..
T Consensus        26 ~l~-~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          26 NFT-SIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             SEE-EEECSTTSSHHHHHHHHHH
T ss_pred             CEE-EEECCCCCCHHHHHHHHHH
Confidence            354 5889999999999999853

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.95  E-value=0.1  Score=41.55  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      --++|.|++|+|||+|+.++..
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4578899999999999887764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=88.86  E-value=0.097  Score=45.92  Aligned_cols=21  Identities=14%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChhHHHHHhhhc
Q psy15725         16 LVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~   36 (355)
                      |+|.|+.||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999999884

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.84  E-value=0.12  Score=44.03  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=21.9

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .-++|+|=|.-||||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            3589999999999999999988763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.44  E-value=0.12  Score=40.80  Aligned_cols=20  Identities=20%  Similarity=0.288  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999987766

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.42  E-value=0.015  Score=45.10  Aligned_cols=150  Identities=17%  Similarity=0.138  Sum_probs=85.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      +|+++|++|||||||+|+|++......                 +....+..++++     .....++  ..+.+|||||
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~-----------------~~~~~T~~~~~~-----~~~~~~~--~~~~~~DtpG   58 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIA-----------------DYHFTTLVPNLG-----MVETDDG--RSFVMADLPG   58 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEES-----------------STTSSCCCCCEE-----EEECSSS--CEEEEEEHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcee-----------------cCCCceEeeeec-----eeEecCC--cEEEEecCCC
Confidence            599999999999999999988442100                 011111111111     1111122  3578999999


Q ss_pred             cccc----ccccc---ccccCccEEEEEEECCCcchhhhHHHHHH--HHhhhcCCceEEeeccccccccccccccccCcc
Q psy15725         95 QERF----RSLIP---SYIRDSTVAVVVYDITNANSFHQTSKWID--DVRTERGSDVIIMLVGSIETNFTHLSFHHANSF  165 (355)
Q Consensus        95 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~~~s~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
                      ..+.    ..+..   ..+..++.++++++............+..  .....                            
T Consensus        59 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~----------------------------  110 (185)
T d1lnza2          59 LIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSE----------------------------  110 (185)
T ss_dssp             HHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH----------------------------
T ss_pred             cccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccch----------------------------
Confidence            6321    11111   22456889999998877554433222111  11111                            


Q ss_pred             ccCccccccccccCCCccEEEEEeecCCCCcccceehhhhhhhhh--ccCeEEEEeeeeeccccceE
Q psy15725        166 HQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK--ELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~v~~~~~~~~~~--~~~~~~~~~sa~~~~~v~~i  230 (355)
                                ......++|+++|+||+|+.+....    ...+.+  ..+.+++.+||.++.+++++
T Consensus       111 ----------~~~~~~~kp~ivv~NK~Dl~~~~~~----~~~~~~~~~~~~~v~~iSA~~g~Gi~~L  163 (185)
T d1lnza2         111 ----------YNLRLTERPQIIVANKMDMPEAAEN----LEAFKEKLTDDYPVFPISAVTREGLREL  163 (185)
T ss_dssp             ----------SCSSTTTSCBCBEEECTTSTTHHHH----HHHHHHHCCSCCCBCCCSSCCSSTTHHH
T ss_pred             ----------hhhhccCCcchhhccccchHhHHHH----HHHHHHHhccCCcEEEEECCCCCCHHHH
Confidence                      1122346899999999999754321    122222  23567889999999887764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=88.38  E-value=0.11  Score=42.67  Aligned_cols=20  Identities=10%  Similarity=0.350  Sum_probs=17.9

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      +++.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.06  E-value=0.13  Score=41.52  Aligned_cols=20  Identities=35%  Similarity=0.531  Sum_probs=17.9

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      +++.|++|+|||+++..+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999987765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.05  E-value=0.15  Score=39.20  Aligned_cols=118  Identities=14%  Similarity=0.147  Sum_probs=89.3

Q ss_pred             ceEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCccc-----------HHHHHHHHHHHHhhcCCCceEEEEeeCC
Q psy15725        228 KQVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNANS-----------FHQTSKWIDDVRTERGSDVIIMLVGNKT  296 (355)
Q Consensus       228 ~~i~~~i~D~~g~~~~~~~~~~~~~~~~~vi~v~d~~~~~s-----------~~~~~~~~~~i~~~~~~~~piilv~nK~  296 (355)
                      ..+.+.+||++|++.++..|..++..++.+++++|.++...           .+....|...+.+....+.|+++++||+
T Consensus        43 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~  122 (200)
T d2bcjq2          43 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  122 (200)
T ss_dssp             SSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECH
T ss_pred             cceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchh
Confidence            45678899999999999999999999999999999876542           3445667777766666899999999999


Q ss_pred             CCCCcc----------------cCCHHHHHHHH----------hhcCcEEEEecCCCCCCHHHHHHHHHHHcCCC
Q psy15725        297 DLSDKR----------------QVSTEEGERKA----------KELNVMFIETSAKAGYNVKQLFRRVAAALPGM  345 (355)
Q Consensus       297 Dl~~~~----------------~v~~~~~~~~~----------~~~~~~~~~~SA~~~~gv~~l~~~l~~~i~~~  345 (355)
                      |+...+                .........+.          ....+.+++|||++|.||+++|+.|.+.|.+.
T Consensus       123 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         123 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            973211                11222222221          12336789999999999999999999988754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=87.76  E-value=0.14  Score=42.40  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999888773

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=87.40  E-value=0.14  Score=43.48  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ++|+|=|.-||||||+++.|..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCcCCCHHHHHHHHHH
Confidence            6799999999999999998864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=87.24  E-value=0.15  Score=41.84  Aligned_cols=20  Identities=15%  Similarity=0.190  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChhHHHHHhhh
Q psy15725         16 LVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~   35 (355)
                      .++.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999988765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=87.13  E-value=0.12  Score=45.43  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=21.7

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      ..+-+++|+|.+|+|||+++..++.+
T Consensus        48 ~~~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          48 AEPRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cccceEEEEeCCCCcHHHHHHHHHHH
Confidence            34567999999999999998877764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.65  E-value=0.13  Score=43.13  Aligned_cols=18  Identities=28%  Similarity=0.505  Sum_probs=14.6

Q ss_pred             EEEEcCCCCChhHH-HHHh
Q psy15725         16 LVFLGEQSVGKTSL-ITRF   33 (355)
Q Consensus        16 I~vvG~~~vGKStL-l~~l   33 (355)
                      ++|.|.+|+||||. ++|+
T Consensus        27 ~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHH
Confidence            88999999999965 4444

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.60  E-value=0.13  Score=42.84  Aligned_cols=18  Identities=22%  Similarity=0.386  Sum_probs=14.6

Q ss_pred             EEEEcCCCCChhHH-HHHh
Q psy15725         16 LVFLGEQSVGKTSL-ITRF   33 (355)
Q Consensus        16 I~vvG~~~vGKStL-l~~l   33 (355)
                      ++|+|.||+||||. ++++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHH
Confidence            78999999999975 4554

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=85.79  E-value=0.19  Score=40.28  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -|++.|..||||||+.+-|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999988755

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.71  E-value=0.27  Score=40.26  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=22.3

Q ss_pred             CcceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         10 PLRKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        10 ~~~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      ..++--+.+.|+++.|||+|++.+..
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            34566789999999999999999887

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=85.24  E-value=0.052  Score=41.74  Aligned_cols=50  Identities=22%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             CccEEEEEeecCCCCcccceeh--hhhhhhhh----ccCeEEEEeeeeeccccceE
Q psy15725        181 SDVIIMLVGNKTDLSDKRQVST--EEGERKAK----ELNVMFIETSAKAGYNVKQV  230 (355)
Q Consensus       181 ~~~piilv~nK~D~~~~~~v~~--~~~~~~~~----~~~~~~~~~sa~~~~~v~~i  230 (355)
                      .++|+++|+||+|+.+......  .....+..    ....+++.+||.+|.|++++
T Consensus       110 ~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL  165 (179)
T d1wb1a4         110 FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDEL  165 (179)
T ss_dssp             TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHH
T ss_pred             cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHH
Confidence            4789999999999865432111  11111111    22358899999999988753

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.15  E-value=0.39  Score=39.97  Aligned_cols=67  Identities=21%  Similarity=0.271  Sum_probs=41.7

Q ss_pred             EEEEEeCCCccc-------------ccccccccccCCcEEEEEE-eCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q psy15725        231 RLQLWDTAGQER-------------FRSLIPSYIRDSTVAVVVY-DITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT  296 (355)
Q Consensus       231 ~~~i~D~~g~~~-------------~~~~~~~~~~~~~~vi~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  296 (355)
                      .+.++|+||-..             ...++..|+..++.+++++ +.......+....+.+.+..   .+.++++|.||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~---~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc---CCCeEEEEEecc
Confidence            467899999322             2234566778888877776 43333333333344444432   467899999999


Q ss_pred             CCCC
Q psy15725        297 DLSD  300 (355)
Q Consensus       297 Dl~~  300 (355)
                      |...
T Consensus       209 D~~~  212 (306)
T d1jwyb_         209 DLMD  212 (306)
T ss_dssp             TSSC
T ss_pred             cccc
Confidence            9853

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.14  E-value=0.35  Score=40.08  Aligned_cols=68  Identities=19%  Similarity=0.238  Sum_probs=41.3

Q ss_pred             EEEEEeCCCcccc-------------cccccccccCCcEEE-EEEeCCCcccHHHHHHHHHHHHhhcCCCceEEEEeeCC
Q psy15725        231 RLQLWDTAGQERF-------------RSLIPSYIRDSTVAV-VVYDITNANSFHQTSKWIDDVRTERGSDVIIMLVGNKT  296 (355)
Q Consensus       231 ~~~i~D~~g~~~~-------------~~~~~~~~~~~~~vi-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~  296 (355)
                      .+.++|+||-...             ..+...++...+.++ ++.+.+...+-+....+.+.+..   .+.++++|.||+
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~---~~~r~i~Vltk~  202 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITKL  202 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT---TCSSEEEEEECG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCc---CCCceeeEEecc
Confidence            3678999993221             233445555666544 55556555554444455555433   567899999999


Q ss_pred             CCCCc
Q psy15725        297 DLSDK  301 (355)
Q Consensus       297 Dl~~~  301 (355)
                      |...+
T Consensus       203 D~~~~  207 (299)
T d2akab1         203 DLMDE  207 (299)
T ss_dssp             GGSCT
T ss_pred             ccccc
Confidence            98644

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=83.57  E-value=0.33  Score=40.80  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChhHHHHHhhh
Q psy15725         14 FKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        14 ~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      -.++++|++|||||.|...+..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHH
Confidence            4689999999999999988776

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.43  E-value=0.37  Score=39.53  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHhhhc
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999988763

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.21  E-value=0.35  Score=39.32  Aligned_cols=21  Identities=14%  Similarity=0.404  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCChhHHHHHhhh
Q psy15725         15 KLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +|+|.|..||||||+.--|..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            688999999999999866554

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.56  E-value=0.43  Score=40.22  Aligned_cols=26  Identities=23%  Similarity=0.227  Sum_probs=23.1

Q ss_pred             cceeEEEEEcCCCCChhHHHHHhhhc
Q psy15725         11 LRKFKLVFLGEQSVGKTSLITRFMYD   36 (355)
Q Consensus        11 ~~~~~I~vvG~~~vGKStLl~~l~~~   36 (355)
                      .+.++|.|.|+||+|||||+++|...
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            35689999999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.94  E-value=0.095  Score=40.05  Aligned_cols=78  Identities=26%  Similarity=0.325  Sum_probs=48.2

Q ss_pred             EEEEEcCCCCChhHHHHHhhhcCCCCCceeeeecccceeeecccCCCCCccccccceeeeeeeeeecCcEEEEEEEecCC
Q psy15725         15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   94 (355)
Q Consensus        15 ~I~vvG~~~vGKStLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g   94 (355)
                      .|+++|.+|||||||+|+|++....-                  +..+.+   |...      ..+.+.  .+.+|||||
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~------------------~~~~g~---T~~~------~~~~~~--~~~ivDtpG   52 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRR------------------GKRPGV---TRKI------IEIEWK--NHKIIDMPG   52 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSS------------------SSSTTC---TTSC------EEEEET--TEEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee------------------eCCCCE---eecc------cccccc--cceecccCC
Confidence            69999999999999999999854211                  111111   1110      111122  257899999


Q ss_pred             cccc---------------cccccccccCccEEEEEEECCCc
Q psy15725         95 QERF---------------RSLIPSYIRDSTVAVVVYDITNA  121 (355)
Q Consensus        95 ~~~~---------------~~~~~~~~~~~d~ii~v~d~~~~  121 (355)
                      ....               .......++.+|++++|+|+...
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~   94 (184)
T d2cxxa1          53 FGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAA   94 (184)
T ss_dssp             BSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHH
T ss_pred             ceeccccccccccccchhhhhhhhhcccccchheeeeecccc
Confidence            5211               11233445678999999999764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.86  E-value=0.52  Score=33.25  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCChhHHHHHhhh
Q psy15725         12 RKFKLVFLGEQSVGKTSLITRFMY   35 (355)
Q Consensus        12 ~~~~I~vvG~~~vGKStLl~~l~~   35 (355)
                      +-+.|.+-|..|+|||+|.++|..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            458899999999999999999865

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.73  E-value=0.49  Score=36.10  Aligned_cols=29  Identities=21%  Similarity=0.274  Sum_probs=22.2

Q ss_pred             EEEEcCCCCChhHHHHHhhhcCCCCCcee
Q psy15725         16 LVFLGEQSVGKTSLITRFMYDSFDNTYQA   44 (355)
Q Consensus        16 I~vvG~~~vGKStLl~~l~~~~~~~~~~~   44 (355)
                      |+|+|...||||.+..++........|.+
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~~~YiA   30 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQVLYIA   30 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEE
T ss_pred             EEEECCCCccHHHHHHHHHhcCCCcEEEE
Confidence            68999999999999999876443333433